Psyllid ID: psy15235

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MSMIHLCLSLLAIFVHQSISADGKITYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFMDY
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEEEccccccccccccccEEEEccccEEEEEEEcccccEEEEEccEEccccccccEEEEEEcccccccEEEEEEEEcccEEEEEEEEEEEEEcccccEEEcccEEEEEccccEEEEEEEEccccccccEEEEEEccEEccccccccEEEEccccEEEEccccccccEEEEEEEEcccccEEEcEEEEEEEEEcccEEEccccEEEEccccEEEEEEEEEEcccEEEEEEccEEccccccEEEEcccccccccccEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEEEEccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHEEEEEcccccccccccccccEEEEcccEEEEEEEEccccccEEccccEEEEccccccccccEEEEEccccEEEEEEEEEccccEEEEEEEEccccccccEEEccccEEEEcccEEEEEEEEEccccccccEEEEEEccEEccccccEEEEEEcccEEEEEEEEEcccccEEEEEEEccccccccEEEEEEEEccccccccccccEEEEEccEEEEEEEEEcccccEEEEEEcccEEEccccEEEEEEcccEEccEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEEEEccccccccccHHHHHHHHccc
Coil and Loop (DISEMBL)
MSMIHLCLSLLAIFVHQsisadgkityfgdteimegapinISCILTIFEQVKWQlngrninqssvdsgfaatanltednfkYSIHEAILEsgyvqsslfiprmnaitgnydiepkykvfeyrvpftlkcnvtspppgddyqiVWYKGNKSITEATELsgrltqskdsitirkttvddagqyscrlidpkstnttplaqadfdvimkPTAKLVETLTVIEGEKLRLEClvvgsppptvewrigndtyfrsqgriklsehpekgtansvlqideatmadrgnyychgnnvatrnsqpneAFVYVRVKGKSFGYDRVEAIHQFMDY
Flexible Loop (DISEMBL)
MSMIHLCLSLLAIFVHQSISADGKITYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTlkcnvtspppgddYQIVWYKGNKSITeatelsgrltqskdsitirkttvddagqyscrlidpkstnttplaqadfdviMKPTAKLVETLTVIEGEKLRleclvvgsppptvewrignDTYFRSQGRIklsehpekgtansvLQIDEATMADRGNYYCHGNnvatrnsqpneAFVYVRVKGKSFGYDRVEAIHQFMDY
Low Complexity Region (SEG)
MSMIHLCLSLLAIFVHQSISADGKITYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFMDY
Disordered region (IsUnstruct)
***IHLCLSLLAIFVHQSISADGKITYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE**************ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR**************VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQ****
Disordered Region (DISOPRED)
*SMIHLCLSLLAIFVHQSISAD**ITY***TEIMEGAPINISCILTIFEQVKWQLNGRNIN**************TEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE**********SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA*L*****VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR*QG***LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV************IHQFMDY
Disordered Region (DISEMBL)
MSMIHLCLSLLAIFVHQSISADGKITYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFMDY
Disordered Region (DISPRO)
MSMIHLCLSLLAIFVHQSISADGKITYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFMDY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSMIHLCLSLLAIFVHQSISADGKITYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFMDY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.495	0.031	0.280	1e-10
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.495	0.028	0.25	4e-09
Q00872	1141	Myosin-binding protein C,	no	N/A	0.489	0.138	0.284	8e-09
P98160	4391	Basement membrane-specifi	no	N/A	0.455	0.033	0.301	9e-09
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.739	0.006	0.255	1e-08
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.489	0.452	0.268	1e-08
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.470	0.004	0.297	2e-08
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.486	0.030	0.265	4e-08
B3MKS0	880	Interference hedgehog OS=	N/A	N/A	0.433	0.159	0.278	1e-07
Q96JA1	1093	Leucine-rich repeats and	no	N/A	0.458	0.135	0.276	1e-07

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 29/189 (15%)

Query: 113  EPKYKVFEYRV-----PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS 167
            E +  V EYR      P  L C+  + PP D   + WY+ ++ ++   E+S  + Q    
Sbjct: 2751 EARGGVTEYREIVENNPAYLYCDTNAIPPPD---LTWYREDQPLSAGDEVS--VLQGGRV 2805

Query: 168  ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD-------VIMKPTAKLVETLTVIEG 220
            + I     ++AG+YSC     K++N        ++       VI+  T +LVE +TV   
Sbjct: 2806 LQIPLVRAENAGRYSC-----KASNEVGEDWLHYELLVLTPPVILGDTEELVEEVTVNAS 2860

Query: 221  EKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGN 280
              + L+C  +G+P PT+ W + N   F    R+++ E  +      VLQ+  A +AD  +
Sbjct: 2861 STVSLQCPALGNPVPTISW-LQNGLPFSPSPRLQVLEDGQ------VLQVSTAEVADAAS 2913

Query: 281  YYCHGNNVA 289
            Y C   N A
Sbjct: 2914 YMCVAENQA 2922

Homo sapiens (taxid: 9606)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 142  IVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF 201
            I+WYK N  +TE++ +  +   +   + + + T +DAG+YSC+ I+   T+       + 
Sbjct: 1392 IMWYKDNVQVTESSTI--QTVNNGKILKLFRATPEDAGRYSCKAINIAGTSQKYF---NI 1446

Query: 202  DVIMKPT---AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
            DV++ PT         ++V+    + LEC V G+P P + W       F     ++L + 
Sbjct: 1447 DVLVPPTIIGTNFPNEVSVVLNRDVALECQVKGTPFPDIHWFKDGKPLFLGDPNVELLDR 1506

Query: 259  PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV--RVKGKSFGYD 312
                    VL +  A   D+G Y C  +N A + ++  +  +Y+   +KG +   D
Sbjct: 1507 ------GQVLHLKNARRNDKGRYQCTVSNAAGKQAKDIKLTIYIPPSIKGGNVTTD 1556

Homo sapiens (taxid: 9606)

>sp|Q00872|MYPC1_HUMAN Myosin-binding protein C, slow-type OS=Homo sapiens GN=MYBPC1 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 35/193 (18%)

Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELS----GRLTQSKDSITIRKTTVDDAGQYS 182
           LKC ++   PG      W K    + E+  L     GR+ +    + I     +D G Y 
Sbjct: 452 LKCEISENIPGK-----WTKNGLPVQESDRLKVVHKGRIHK----LVIANALTEDEGDY- 501

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVE------TLTVIEGEKLRLECLVVGSPPPT 236
             +  P + N T  A+     ++ P   +++      T+TVI G KLRLE  + G PPP 
Sbjct: 502 --VFAPDAYNVTLPAKVH---VIDPPKIILDGLDADNTVTVIAGNKLRLEIPISGEPPPK 556

Query: 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN 296
             W  G+       GRI+   +P+    +S L ID A   D G Y+ +  N A       
Sbjct: 557 AMWSRGDKAIMEGSGRIRTESYPD----SSTLVIDIAERDDSGVYHINLKNEA------G 606

Query: 297 EAFVYVRVKGKSF 309
           EA   ++VK   F
Sbjct: 607 EAHASIKVKVVDF 619

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Homo sapiens (taxid: 9606)

>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1 SV=4

 Score = 61.2 bits (147), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 80/189 (42%), Gaps = 42/189 (22%)

Query: 126  TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
            TL+C+ T SP P     I W K    +     L G      D++ I +    D+GQY C 
Sbjct: 3230 TLRCSATGSPAP----TIHWSKLRSPLPWQHRLEG------DTLIIPRVAQQDSGQYIC- 3278

Query: 185  LIDPKSTNTTPLAQADFDVIMK----PTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVEW 239
                    T+P   A+  +I+     P A  V E  +V  GE ++L+CL  G+PP T +W
Sbjct: 3279 ------NATSPAGHAEATIILHVESPPYATTVPEHASVQAGETVQLQCLAHGTPPLTFQW 3332

Query: 240  -RIGNDTYFRSQGRIKLSEHPEKGTA-NSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297
             R+G             S  P + TA N +L  + A   D G Y C      T      E
Sbjct: 3333 SRVG-------------SSLPGRATARNELLHFERAAPEDSGRYRCR----VTNKVGSAE 3375

Query: 298  AFVYVRVKG 306
            AF  + V+G
Sbjct: 3376 AFAQLLVQG 3384

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.

Homo sapiens (taxid: 9606)

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 113/282 (40%), Gaps = 43/282 (15%)

Query: 28   FGDTEIMEGAPINISCIL--TIFEQVKWQLNG------RNINQSSVDSGFAATANLTEDN 79
              D E   G P+ ++C L  +   QV W  +G       N+  S VD+   AT  + + +
Sbjct: 7108 LKDIEQTVGLPVTLTCRLNGSAPIQVCWYRDGVLLRDDENLQTSFVDN--VATLKILQTD 7165

Query: 80   FKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTL----------KC 129
              +S   +   S  + ++    R+ A       EPK   F    P ++          +C
Sbjct: 7166 LSHSGQYSCSASNPLGTASSSARLTAR------EPKKSPFFDIKPVSIDVIAGESADFEC 7219

Query: 130  NVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK 189
            +VT   P    +I W K NK I      +     +   + I K    D+GQY+C+  +  
Sbjct: 7220 HVTGAQP---MRITWSKDNKEIRPGGNYTITCVGNTPHLRILKVGKGDSGQYTCQATNDV 7276

Query: 190  STNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247
              +   +  A   V   P    KL  +    +GE ++LEC + GSP   V W       F
Sbjct: 7277 GKD---MCSAQLSVKEPPKFVKKLEASKVAKQGESIQLECKISGSPEIKVSW-------F 7326

Query: 248  RSQGRIKLSEHPEKGTANSV--LQIDEATMADRGNYYCHGNN 287
            R+   +  S        NSV  L I+EA+  D G+Y C  +N
Sbjct: 7327 RNDSELHESWKYNMSFINSVALLTINEASAEDSGDYICEAHN 7368

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 32/190 (16%)

Query: 127 LKCNVTSPPPGDDYQIVWYK--------------GNKSITEATELSGRLTQSKDSITIRK 172
           L+C+V       DY ++W K              G+  I   +  + R   +  + T++ 
Sbjct: 41  LECSVQY---AQDYPVLWMKVDRNRQVDPLPISTGSSLIIRDSRFALRYDTASSTYTLQI 97

Query: 173 TTVD--DAGQYSCRLIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLECL 228
             +   DAG Y C++I     N    A+ D  V   P  +     +L V EG+ +RLEC 
Sbjct: 98  KDIQETDAGFYQCQVI--IGLNNKITAEVDLQVRRPPVISDNSTRSLVVSEGQAVRLECY 155

Query: 229 VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
             G P P V WR  N+    + G I            +VL+I      DRG YYC   N 
Sbjct: 156 AGGYPAPRVSWRRENNAILPTGGSIY---------RGNVLKISRIGKEDRGTYYCVAENG 206

Query: 289 ATRNSQPNEA 298
             + ++ N A
Sbjct: 207 VGKGARRNIA 216

May play a role in early neuronal differentiation and axon outgrowth.

Schistocerca americana (taxid: 7009)

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 16/168 (9%)

Query: 127  LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186
            L+C+VT   P    ++ W K N+ I           ++   +TI K    D+GQY+C  +
Sbjct: 9060 LECHVTGTQP---IKVTWAKDNREIRSGGNYQISYLENSAHLTIVKVDKGDSGQYTCYAV 9116

Query: 187  DPKSTNTTPLAQADFDVIMKP---TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
            +    ++   AQ +    + P   T KL ET+   EG   +LE  V GS P TV W    
Sbjct: 9117 NEVGKDSC-TAQLNIKERLIPPSFTKKLSETVEETEGNSFKLEGRVAGSQPITVAW---- 9171

Query: 244  DTYFRSQGRIKLSEHPEKGTANS--VLQIDEATMADRGNYYCHGNNVA 289
               +++   I  + + E    N+  +LQ+  A+MAD G Y C   N A
Sbjct: 9172 ---YKNNVEIHPTSNCEIMFKNNALLLQVKRASMADAGLYTCKATNDA 9216

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 35/192 (18%)

Query: 113  EPKYKVFEYRV-----PFTLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSGRLTQSKD 166
            E + +V EYR      P  L C+  + PPP    ++ WY+  + ++ A  +S  + Q   
Sbjct: 2785 EAQGRVTEYREIVENNPAYLYCDTNAIPPP----ELTWYREGQPLSAADGVS--VLQGGR 2838

Query: 167  SITIRKTTVDDAGQYSCRLIDPKSTN---------TTPLAQADFDVIMKPTAKLVETLTV 217
             + +     +DAG+YSC+  +    +         T P+   D       T +LVE +TV
Sbjct: 2839 ILQLPLVQAEDAGRYSCKAANEVGEDWLHYELLVLTPPVIPGD-------TQELVEEVTV 2891

Query: 218  IEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
                 + LEC  +G+P P V W   N        R+++ E  +      VL++  A +AD
Sbjct: 2892 NASSAVSLECPALGNPAPAVSW-FQNGLPVSPSPRLQVLEEGQ------VLKVATAEVAD 2944

Query: 278  RGNYYCHGNNVA 289
              +Y C   N A
Sbjct: 2945 AASYMCVAENQA 2956

Mus musculus (taxid: 10090)

>sp|B3MKS0|IHOG_DROAN Interference hedgehog OS=Drosophila ananassae GN=iHog PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 154 ATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP------KSTNTTPL-------AQAD 200
             EL    + +  ++ +R  +VD +G YSC+  +P      KST++  L       +Q  
Sbjct: 190 GVELGPEYSGTGGNLFLRNVSVDSSGSYSCQATNPASGERIKSTSSMELQVVPSRGSQVK 249

Query: 201 FDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE 260
              ++ P     +T+T IEG  L L C  VGSPPPT  W   +     +  R ++  H  
Sbjct: 250 APYLL-PGQPGSQTVTAIEGGTLLLLCPGVGSPPPTAVWSSPDIVGAVNNKRTRVLAH-- 306

Query: 261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
                  L+I    + D G Y C+ +N       P E F+ V+V+
Sbjct: 307 ------ALEISNVQIGDSGTYICYLDNGV---RPPLEHFIQVKVE 342

Mediates response to the active Hedgehog (Hh) protein signal in embryos, functioning upstream or at the level of patched (ptc).

Drosophila ananassae (taxid: 7217)

>sp|Q96JA1|LRIG1_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Homo sapiens GN=LRIG1 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 15/163 (9%)

Query: 127 LKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           L+C  T  P   + QI W K G      A E    +    D   I    +DDAG YSC  
Sbjct: 618 LECAATGHP---NPQIAWQKDGGTDFPAARERRMHVMPDDDVFFITDVKIDDAGVYSCTA 674

Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKL-VETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
            +   + +   A A   V+  P+  + +E   V  GE + L+C   G+PPP + W     
Sbjct: 675 QNSAGSIS---ANATLTVLETPSLVVPLEDRVVSVGETVALQCKATGNPPPRITW----- 726

Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
             F+    + L+E       N +L +      D G Y C  +N
Sbjct: 727 --FKGDRPLSLTERHHLTPDNQLLVVQNVVAEDAGRYTCEMSN 767

Act as a feedback negative regulator of signaling by receptor tyrosine kinases, through a mechanism that involves enhancement of receptor ubiquitination and accelerated intracellular degradation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
242015163	379	Basigin precursor, putative [Pediculus h	0.897	0.765	0.317	2e-40
328709616	375	PREDICTED: hemicentin-1-like isoform 2 [	0.835	0.72	0.323	2e-32
193582369	285	PREDICTED: hemicentin-1-like isoform 1 [	0.622	0.705	0.357	7e-27
194863023	640	GG10513 [Drosophila erecta] gi|190662105	0.625	0.315	0.318	2e-21
194759077	270	GF14758 [Drosophila ananassae] gi|190615	0.606	0.725	0.317	2e-20
15291453	298	GH21853p [Drosophila melanogaster] gi|22	0.625	0.677	0.304	2e-19
195472907	651	GE18733 [Drosophila yakuba] gi|194174840	0.566	0.281	0.323	3e-19
161076803	648	basigin, isoform G [Drosophila melanogas	0.625	0.311	0.304	3e-19
195339086	650	GM16732 [Drosophila sechellia] gi|194130	0.625	0.310	0.313	4e-19
195035551	648	GH11616 [Drosophila grimshawi] gi|193905	0.622	0.310	0.322	1e-18

>gi|242015163|ref|XP_002428243.1| Basigin precursor, putative [Pediculus humanus corporis] gi|212512804|gb|EEB15505.1| Basigin precursor, putative [Pediculus humanus corporis]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 165/340 (48%), Gaps = 50/340 (14%)

Query: 8   LSLLAIF--VHQSISADGKITYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSV 65
           LSL +I   +  + +   ++TY G++ ++EG P  I C LT+F+ +KWQ NG  +     
Sbjct: 12  LSLFSILLVILSTGAVSNRVTYEGESMVVEGNPFQIICKLTVFDTMKWQRNGVTL----- 66

Query: 66  DSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN--------------------- 104
                     T++N   S+ E     GY+   L I +                       
Sbjct: 67  ---------YTDENTLMSLSEDESGGGYIIGKLMIRKARDYHSGEYTCSSFGGPGHTVNV 117

Query: 105 ---AITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL 161
               I GN+D +  YKV EY+    L+CN+T     D Y + W K +K ++E ++    +
Sbjct: 118 VGVKIVGNFDFD-WYKVIEYKSTLNLQCNLTDESVADSYTVKWLKDDKPMSETSDNRVEI 176

Query: 162 TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGE 221
              ++   + K    DAG YSC   +    N + L + +F V+ KP  KL    +V+EGE
Sbjct: 177 KPLENRFILSKALDTDAGNYSCVFTN--KINNSEL-RLNFQVVFKPYVKLPPHTSVVEGE 233

Query: 222 KLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
           KL L C+++  P P V W+IGN TY  S  R+KL E+ EKG   S+LQI+EA M DR  Y
Sbjct: 234 KLTLTCIILSDPVPIVYWKIGNKTYEDSDERVKLLENKEKGIPKSILQIEEANMDDRNTY 293

Query: 282 YCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFM 321
            C   N+  + S   E+  +VRVK      D++ A+  F+
Sbjct: 294 TCGAYNIGNKFSNATESSTFVRVK------DKLAALWPFL 327

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709616|ref|XP_003244015.1| PREDICTED: hemicentin-1-like isoform 2 [Acyrthosiphon pisum]

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 153/297 (51%), Gaps = 27/297 (9%)

Query: 26  TYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSI- 84
           +Y G+T + +G P  I+C +++F+ +KWQ +G  +        +  +  +T DN   S  
Sbjct: 32  SYEGNTTVRDGDPFKITCRVSMFQVIKWQKDGHTL---VTGEHYNISEAVTNDNMFVSTI 88

Query: 85  ---HEAILESGYVQSS--------LFIPRMNA-ITGNYDIEPKYKVFEYRVPFTLKCNV- 131
                + + SG  + +        L++    A I  NYD    +K+ EY+   TL CN+ 
Sbjct: 89  MANSASSMHSGAYRCTTQYNKFHVLYVVTAQATIKANYDYGDNHKIGEYKSKLTLICNID 148

Query: 132 -TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190
            T  P   +Y   W+KG+  IT  +E    +  S +++ + +   +DAGQY+C L    S
Sbjct: 149 GTQDP---EYIWKWFKGDNQITTDSEDPHHVDVSGNTLVVNRFVENDAGQYTCSLF---S 202

Query: 191 TNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ 250
           +  +P+ +  F+V++KP  KL +T T IEGEK+ LEC+V G P P V W+  N T   S+
Sbjct: 203 SKNSPIDKKVFNVVLKPYMKLPKTATFIEGEKMELECIVYGVPTPEVSWKFENTTLVPSE 262

Query: 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
             IK   + +K   N++L +D  TM DRGN+ C G N        + A  YVR+K K
Sbjct: 263 -HIKFLPN-KKNITNAILVLDPITMKDRGNFICSGKNSVVYEPVHSGA-SYVRIKDK 316

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193582369|ref|XP_001950471.1| PREDICTED: hemicentin-1-like isoform 1 [Acyrthosiphon pisum]

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 17/218 (7%)

Query: 106 ITGNYDIEPKYKVFEYRVPFTLKCNV--TSPPPGDDYQIVWYKGNKSITEATELSGRLTQ 163
           I  NYD    +K+ EY+   TL CN+  T  P   +Y   W+KG+  IT  +E    +  
Sbjct: 32  IKANYDYGDNHKIGEYKSKLTLICNIDGTQDP---EYIWKWFKGDNQITTDSEDPHHVDV 88

Query: 164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKL 223
           S +++ + +   +DAGQY+C L    S+  +P+ +  F+V++KP  KL +T T IEGEK+
Sbjct: 89  SGNTLVVNRFVENDAGQYTCSLF---SSKNSPIDKKVFNVVLKPYMKLPKTATFIEGEKM 145

Query: 224 RLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
            LEC+V G P P V W+  N T   S+  IK   + +K   N++L +D  TM DRGN+ C
Sbjct: 146 ELECIVYGVPTPEVSWKFENTTLVPSE-HIKFLPN-KKNITNAILVLDPITMKDRGNFIC 203

Query: 284 HGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFM 321
            G N        + A  YVR+K      D++ A+  F+
Sbjct: 204 SGKNSVVYEPVHSGA-SYVRIK------DKMAALWPFL 234

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863023|ref|XP_001970238.1| GG10513 [Drosophila erecta] gi|190662105|gb|EDV59297.1| GG10513 [Drosophila erecta]

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 21/223 (9%)

Query: 93  YVQSSLFIP-RMNAITGNYD-IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS 150
           ++Q    +P +M+ +  NYD +E + K ++ R P  L CNV    PG    ++W K   +
Sbjct: 380 HLQHQTLLPVKMDKLVPNYDNVEHQMKFYDIRSPLVLSCNVKDGTPGG--VLIWKKNGTA 437

Query: 151 ITEATELSGR--LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208
           +TE   L GR  L   ++   I KT  +D G+YSC                + +VI +  
Sbjct: 438 VTEVPSLRGRFKLIADENKFIIDKTDTNDDGKYSCEFDG---------VSKEIEVIARVV 488

Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
            ++     V+EGEK+ + C VVG+ P  + W   N T      R  L    + G  N++L
Sbjct: 489 VRVPSNTAVVEGEKMSVTCSVVGTKP-QLTWTFANVTLTNGTDRFILKPD-DNGVPNAIL 546

Query: 269 QIDEATMADRGNYYCHGNNVAT----RNSQPNEAFVYVRVKGK 307
            +D  T+ DRG Y C G N A      N+ P   F  VRVKGK
Sbjct: 547 TLDNVTLDDRGEYKCIGRNAADAFGGNNTTPASDFTTVRVKGK 589

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759077|ref|XP_001961776.1| GF14758 [Drosophila ananassae] gi|190615473|gb|EDV30997.1| GF14758 [Drosophila ananassae]

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 21/217 (9%)

Query: 97  SLFIPRMNAITGNYD-IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT 155
           +++   ++ +  NYD +E + K +E R P  L CNV S        ++W K + ++ E  
Sbjct: 18  AVYAQSLDKLVPNYDNVEQQMKFYEIRTPLVLSCNVKSETTT---PLIWKKNHTNVMEVD 74

Query: 156 ELSGR--LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE 213
            L GR  + +++    I KT   D G YSC +     T         F+VI K   ++  
Sbjct: 75  SLKGRYKIIEAERKFIIEKTDASDDGTYSCEIEGESKT---------FNVIAKVAVRVPS 125

Query: 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
              V+EGEK+ + C+VVG+ P  + W  GN T   S GR  L E  +    N++L ++  
Sbjct: 126 NTAVVEGEKMSITCVVVGTAPQ-LSWSFGNLTLTNSTGRYVLKE--DNNVQNAILTLENV 182

Query: 274 TMADRGNYYCHGNNVATRNSQPNEAFV---YVRVKGK 307
           T+ DRG Y C G N A       E       VRVKGK
Sbjct: 183 TLEDRGEYKCIGRNAANEYGTKIEIATDASTVRVKGK 219

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|15291453|gb|AAK92995.1| GH21853p [Drosophila melanogaster] gi|220945614|gb|ACL85350.1| CG31605-PG [synthetic construct]

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 21/223 (9%)

Query: 93  YVQSSLFIP-RMNAITGNYD-IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS 150
           ++Q    +P +M+ +  NYD  E + K ++ R P  L CNV    PG    ++W K   +
Sbjct: 38  HLQHQTLLPVKMDKLVPNYDNAEHQMKFYDIRSPLVLSCNVKDGTPGG--VLIWKKNGTA 95

Query: 151 ITEATELSGR--LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208
           +T+   L GR  L   ++   I KT  +D G+YSC                + +VI +  
Sbjct: 96  VTDVPSLRGRFKLIADENKFIIDKTDTNDDGKYSCEFDG---------VSKEIEVIARVV 146

Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
            ++     V+EGEK+ + C VVG+ P  + W   N T   +  R  L    + G  N++L
Sbjct: 147 VRVPSNTAVVEGEKMSVTCSVVGTKP-ELTWTFANVTLTNATDRFILKPD-DNGVPNAIL 204

Query: 269 QIDEATMADRGNYYCHGNNVAT----RNSQPNEAFVYVRVKGK 307
            +D  T+ DRG Y C G N A       + P      VRVKGK
Sbjct: 205 TLDNVTLDDRGEYKCIGRNAANVYGGNTTTPASDVTTVRVKGK 247

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472907|ref|XP_002088739.1| GE18733 [Drosophila yakuba] gi|194174840|gb|EDW88451.1| GE18733 [Drosophila yakuba]

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 97/201 (48%), Gaps = 18/201 (8%)

Query: 93  YVQSSLFIP-RMNAITGNYD-IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS 150
           ++Q    +P +M+ +  NYD +E + K ++ R P  L CNV    PG    ++W K    
Sbjct: 392 HLQHQTLLPVKMDKLVPNYDNVEHQMKFYDIRSPLVLSCNVKDSTPGG--LLIWRKNGTV 449

Query: 151 ITEATELSGR--LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208
           +TE   L GR  L   ++   I KT   D G+YSC      S  T        +VI +  
Sbjct: 450 VTEVASLRGRFKLIPDENKFIIDKTDTTDDGEYSCEY----SGET-----KKIEVIARVV 500

Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
            ++     V+EGEK+ + C VVG+ P  + W  GN T      R+ +   P+ G  N++L
Sbjct: 501 VRVPSNTAVVEGEKMSVTCSVVGTKP-QLTWTFGNVTLTNDTDRVIVK--PDNGVPNAIL 557

Query: 269 QIDEATMADRGNYYCHGNNVA 289
            +D  T+ DRG Y C G N A
Sbjct: 558 TLDNVTLDDRGEYKCTGKNAA 578

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161076803|ref|NP_723346.2| basigin, isoform G [Drosophila melanogaster] gi|157400115|gb|AAN10661.2| basigin, isoform G [Drosophila melanogaster]

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 21/223 (9%)

Query: 93  YVQSSLFIP-RMNAITGNYD-IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS 150
           ++Q    +P +M+ +  NYD  E + K ++ R P  L CNV    PG    ++W K   +
Sbjct: 388 HLQHQTLLPVKMDKLVPNYDNAEHQMKFYDIRSPLVLSCNVKDGTPGG--VLIWKKNGTA 445

Query: 151 ITEATELSGR--LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208
           +T+   L GR  L   ++   I KT  +D G+YSC                + +VI +  
Sbjct: 446 VTDVPSLRGRFKLIADENKFIIDKTDTNDDGKYSCEFDG---------VSKEIEVIARVV 496

Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
            ++     V+EGEK+ + C VVG+ P  + W   N T   +  R  L    + G  N++L
Sbjct: 497 VRVPSNTAVVEGEKMSVTCSVVGTKP-ELTWTFANVTLTNATDRFILKPD-DNGVPNAIL 554

Query: 269 QIDEATMADRGNYYCHGNNVAT----RNSQPNEAFVYVRVKGK 307
            +D  T+ DRG Y C G N A       + P      VRVKGK
Sbjct: 555 TLDNVTLDDRGEYKCIGRNAANVYGGNTTTPASDVTTVRVKGK 597

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195339086|ref|XP_002036152.1| GM16732 [Drosophila sechellia] gi|194130032|gb|EDW52075.1| GM16732 [Drosophila sechellia]

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 106/223 (47%), Gaps = 21/223 (9%)

Query: 93  YVQSSLFIP-RMNAITGNYD-IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS 150
           ++Q    +P +M+ +  NYD    + K ++ R P  L CNV    PG    ++W K   +
Sbjct: 390 HLQHQTLLPVKMDKLVPNYDNAMHQMKFYDIRSPLVLSCNVKDGTPGG--VLIWKKNGTA 447

Query: 151 ITEATELSGR--LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208
           +TE   L GR  L   ++   I KT  +D G+YSC   D +S         + +VI +  
Sbjct: 448 VTEVPSLIGRFKLIPDENKFIIDKTDTNDDGKYSCEF-DGES--------KEIEVIARVV 498

Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
            ++     V+EGEK+ + C VVG+ P  + W   N T   +  R  L    + G  N++L
Sbjct: 499 VRVPSNTAVVEGEKMSVTCSVVGTKP-ELTWTFANVTLTNATDRFILKPD-DNGVPNAIL 556

Query: 269 QIDEATMADRGNYYCHGNNVAT----RNSQPNEAFVYVRVKGK 307
            ++  T+ DRG Y C G N A       + P   F  VRVKGK
Sbjct: 557 TLENVTLEDRGEYKCIGRNAANVHGGNTTAPASDFTTVRVKGK 599

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035551|ref|XP_001989241.1| GH11616 [Drosophila grimshawi] gi|193905241|gb|EDW04108.1| GH11616 [Drosophila grimshawi]

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 103/223 (46%), Gaps = 22/223 (9%)

Query: 95  QSSLFIP---RMNAITGNYD-IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS 150
           Q   F+P     +++  NYD +E + K ++ R P  L CNV +    D   ++W K   +
Sbjct: 395 QPKTFLPIKKGPDSLVPNYDHVERQMKFYDIRSPLVLSCNVRNVDSTD--PLIWKKDGVN 452

Query: 151 ITEATELSGR--LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208
           +T+ T+L GR  L  ++    I +    D G YSC             A  D  VI +  
Sbjct: 453 VTDDTDLRGRFRLINAERKFIIDRAEERDHGLYSCEFKG---------ASKDIHVIARIV 503

Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF-RSQGRIKLSEHPEKGTANSV 267
            ++     V+EGEK+ + C V GS P  + W  GN +    S GR  L    E    N++
Sbjct: 504 VRVPSNTGVVEGEKMMITCAVAGSNP-KLSWSFGNYSQVANSTGRYILKPDEESKVENAI 562

Query: 268 LQIDEATMADRGNYYCHGNNVAT---RNSQPNEAFVYVRVKGK 307
           L ++  T+ DRG Y CHG N A     NS     F  VRVKGK
Sbjct: 563 LMVENVTLDDRGEYKCHGRNEANDYGDNSTVATDFTTVRVKGK 605

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
FB|FBgn0261822	648	Bsg "Basigin" [Drosophila mela	0.625	0.311	0.313	5.3e-29
UNIPROTKB|E1BE11	5588	HMCN1 "Uncharacterized protein	0.743	0.042	0.241	4.6e-10
UNIPROTKB|Q96RW7	5635	HMCN1 "Hemicentin-1" [Homo sap	0.743	0.042	0.256	2.9e-09
ZFIN|ZDB-GENE-041014-322	5616	hmcn1 "hemicentin 1" [Danio re	0.712	0.040	0.254	3.8e-09
UNIPROTKB|F1PXF9	5637	HMCN1 "Uncharacterized protein	0.743	0.042	0.245	4.9e-09
ZFIN|ZDB-GENE-040426-1821	403	nptnb "neuroplastin b" [Danio	0.532	0.426	0.297	1.8e-08
UNIPROTKB|E1B9K4	5073	E1B9K4 "Uncharacterized protei	0.557	0.035	0.262	4.5e-08
RGD|1564772	5548	Hmcn1 "hemicentin 1" [Rattus n	0.736	0.042	0.232	8.3e-08
ZFIN|ZDB-GENE-060929-856	809	zgc:152904 "zgc:152904" [Danio	0.489	0.195	0.245	1.2e-07
UNIPROTKB|H9KZA3	5442	HMCN1 "Uncharacterized protein	0.470	0.027	0.3	1.8e-07

FB|FBgn0261822 Bsg "Basigin" [Drosophila melanogaster (taxid:7227)]

 Score = 269 (99.8 bits), Expect = 5.3e-29, Sum P(2) = 5.3e-29
 Identities = 70/223 (31%), Positives = 105/223 (47%)

Query:    93 YVQSSLFIP-RMNAITGNYD-IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS 150
             ++Q    +P +M+ +  NYD  E + K ++ R P  L CNV    PG    ++W K   +
Sbjct:   388 HLQHQTLLPVKMDKLVPNYDNAEHQMKFYDIRSPLVLSCNVKDGTPGG--VLIWKKNGTA 445

Query:   151 ITEATELSGR--LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208
             +T+   L GR  L   ++   I KT  +D G+YSC   D  S         + +VI +  
Sbjct:   446 VTDVPSLRGRFKLIADENKFIIDKTDTNDDGKYSCEF-DGVSK--------EIEVIARVV 496

Query:   209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
              ++     V+EGEK+ + C VVG+ P  + W   N T   +  R  L    + G  N++L
Sbjct:   497 VRVPSNTAVVEGEKMSVTCSVVGTKPE-LTWTFANVTLTNATDRFILKPD-DNGVPNAIL 554

Query:   269 QIDEATMADRGNYYCHGNNVAT----RNSQPNEAFVYVRVKGK 307
              +D  T+ DRG Y C G N A       + P      VRVKGK
Sbjct:   555 TLDNVTLDDRGEYKCIGRNAANVYGGNTTTPASDVTTVRVKGK 597

GO:0007286 "spermatid development" evidence=IMP

GO:0051643 "endoplasmic reticulum localization" evidence=IMP

GO:0051647 "nucleus localization" evidence=IMP

GO:0051646 "mitochondrion localization" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0048788 "presynaptic cytoskeletal matrix assembled at active zones" evidence=IDA

GO:0048786 "presynaptic active zone" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

UNIPROTKB|E1BE11 HMCN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 182 (69.1 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 65/269 (24%), Positives = 123/269 (45%)

Query:    51 VKWQLNGRNINQS----SV--DSGFAATANLTE-DNFKYSIHEAILESGYVQSSLFIP-R 102
             +KW  NGR +       S+  D      A++T  DN +Y I  A+ E+G  +    +   
Sbjct:  1248 IKWLRNGRELTGQEPGISILEDGTLLVIASVTPYDNGEY-ICVAVNEAGTTERRYNLKVH 1306

Query:   103 MNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT 162
             +  +  + +      V   + P +L C V   P      I+WYK +  +TE++ +  ++ 
Sbjct:  1307 VPPVIKDKEQVTNVSVLVNQ-PTSLFCEVEGTPSPI---IMWYKDDVQVTESSSI--QIV 1360

Query:   163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT---AKLVETLTVIE 219
              +   + + +T+ +DAG YSC+ ++   T+       + DV++ PT   A     ++V+ 
Sbjct:  1361 NNGKILKLFRTSPEDAGGYSCKAVNVAGTSQKHF---NIDVLVPPTIIGAGSPGEVSVVL 1417

Query:   220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
              +   LEC V G+P P + W       F     I++ +   +G    VL +  A  +D+G
Sbjct:  1418 NQNTTLECQVKGTPFPVIRWLKDGKPLFLGDPNIEILD---RG---QVLHLKNARRSDKG 1471

Query:   280 NYYCHGNNVATRNSQPNEAFVYV--RVKG 306
              Y C  +N A + ++  +  +Y+   +KG
Sbjct:  1472 RYQCSVSNAAGKQAKDIKLTIYIPPSIKG 1500

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q96RW7 HMCN1 "Hemicentin-1" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 69/269 (25%), Positives = 120/269 (44%)

Query:    51 VKWQLNGRNINQ-----SSVDSG-FAATANLTE-DNFKYSIHEAILESGYVQSSLFIPRM 103
             +KW  NGR +       S ++ G     A++T  DN +Y I  A+ E+G  +    + ++
Sbjct:  1298 IKWLHNGRELTGREPGISILEDGTLLVIASVTPYDNGEY-ICVAVNEAGTTERKYNL-KV 1355

Query:   104 NAITGNYDIEPKYKVFEYRVPFT-LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT 162
             +      D E    V       T L C V   P      I+WYK N  +TE++ +   + 
Sbjct:  1356 HVPPVIKDKEQVTNVSVLLNQLTNLFCEVEGTPSPI---IMWYKDNVQVTESSTIQ-TVN 1411

Query:   163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT---AKLVETLTVIE 219
               K  + + + T +DAG+YSC+ I+   T+       + DV++ PT         ++V+ 
Sbjct:  1412 NGK-ILKLFRATPEDAGRYSCKAINIAGTSQKYF---NIDVLVPPTIIGTNFPNEVSVVL 1467

Query:   220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
                + LEC V G+P P + W       F     ++L +   +G    VL +  A   D+G
Sbjct:  1468 NRDVALECQVKGTPFPDIHWFKDGKPLFLGDPNVELLD---RG---QVLHLKNARRNDKG 1521

Query:   280 NYYCHGNNVATRNSQPNEAFVYV--RVKG 306
              Y C  +N A + ++  +  +Y+   +KG
Sbjct:  1522 RYQCTVSNAAGKQAKDIKLTIYIPPSIKG 1550

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0031012 "extracellular matrix" evidence=TAS

ZFIN|ZDB-GENE-041014-322 hmcn1 "hemicentin 1" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 71/279 (25%), Positives = 123/279 (44%)

Query:    51 VKWQLNGRNI--NQSSV----DSGFAATANLTE-DNFKYS---IHEA-ILESGYVQSSLF 99
             +KW  NG  +  N+  V    D      A+++  DN +Y+   +++A   E  Y Q  + 
Sbjct:  1290 IKWFRNGHELTGNEPGVSILEDGTLLILASVSPLDNGEYTCMAVNDAGTTEKKY-QLKVN 1348

Query:   100 IP---RMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE 156
             +P   R N +  N  +     V     P  L C+VT  P      I WYK    +  +++
Sbjct:  1349 VPPDIRDNGLLSNVSV-----VINQ--PTNLVCDVTGTPVP---VITWYKDGVEVVPSSD 1398

Query:   157 LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVET 214
             +  ++ Q   ++ + K  V DAG+Y C+ I     N     + DF  DV++ PT  ++ T
Sbjct:  1399 V--QILQKGKTLKLLKAAVQDAGRYICKAI-----NIAGSRERDFYLDVLVPPT--IIGT 1449

Query:   215 -----LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQ 269
                  L+ +  +++ LEC V G P PT++W       F     I++    ++      L+
Sbjct:  1450 VGSRDLSAVLNQEIVLECKVKGDPFPTIQWYKDRKPVFLGDPNIEVLNRGQQ------LK 1503

Query:   270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYV--RVKG 306
             I  A + D+  Y C   N A + S+     ++V   +KG
Sbjct:  1504 IKSARLGDQARYQCSATNAAGKQSKDFNLSIFVPPSIKG 1542

GO:0005509 "calcium ion binding" evidence=IEA

GO:0033333 "fin development" evidence=IMP

GO:0071711 "basement membrane organization" evidence=IMP

GO:0033334 "fin morphogenesis" evidence=IMP

UNIPROTKB|F1PXF9 HMCN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 66/269 (24%), Positives = 120/269 (44%)

Query:    51 VKWQLNGRNINQ-----SSVDSG-FAATANLTE-DNFKYSIHEAILESGYVQSSLFIP-R 102
             +KW  NGR +       S ++ G     A++T  DN +Y I  A+ E+G  +    +   
Sbjct:  1300 IKWIWNGRELTGREPGISILEDGTLLVIASVTPYDNGEY-ICVAVNEAGTTEKKYNLKVH 1358

Query:   103 MNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT 162
             +  +  + +      V   ++   L C V   P      I+WYK +  ++E++ +  ++ 
Sbjct:  1359 VPPVIKDKEHITNVSVLINQLT-NLFCEVEGTPSPI---IMWYKDDVQVSESSTI--QIV 1412

Query:   163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT---AKLVETLTVIE 219
              +   + + K T +D G+YSC+ ++   T+       + DV++ PT   A     ++V+ 
Sbjct:  1413 NNGKILKLFKVTPEDVGRYSCKAVNIAGTSQKYF---NIDVLVPPTIIGANSPNEVSVVL 1469

Query:   220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
                  LEC V G+P P + W       F     I+L +   KG    VL +  A  +D+G
Sbjct:  1470 NHDTTLECQVKGTPFPAIHWFKDGKPLFLEDPNIELLD---KG---QVLHLKNARRSDKG 1523

Query:   280 NYYCHGNNVATRNSQPNEAFVYV--RVKG 306
              Y C  +N A + ++     VY+   +KG
Sbjct:  1524 RYQCAVSNAAGKQTKDIRLTVYIPPSIKG 1552

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1821 nptnb "neuroplastin b" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 59/198 (29%), Positives = 83/198 (41%)

Query:   101 PRMNAITGNYDIEPKYKVFEYRVP--FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS 158
             PR+NA +    ++PK        P    LKCN+T+       +  W K  + I+     S
Sbjct:   145 PRINA-SDQEILQPKSSKTSQDPPEPIVLKCNLTNSH-STHQETFWMKNGQEIS-----S 197

Query:   159 GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA---KLVETL 215
              R  +      + K   DD+G+Y C +   KS    P A A  +V   P     K  E  
Sbjct:   198 SRTQRKHTEFRLNKPRTDDSGEYMC-VYTFKSA---PNANASIEVKACPEIIGHKRSENK 253

Query:   216 TVIEGEKLRLECLVVGSPPPTVEWR--IGNDTYF---RSQGRIKLSEHPEKGTANSVLQI 270
                EGE   L C   G P P   WR  +G D+Y     S GR  +    E  T  S+L +
Sbjct:   254 K--EGENATLYCKSAGYPHPVWTWRKKVGRDSYMDIDNSTGRFFIVNR-ENFTELSILDL 310

Query:   271 DEATMADRGNYYCHGNNV 288
             D  T  D G Y+C+ +N+
Sbjct:   311 DIRT--DPGEYFCNASNI 326

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1B9K4 E1B9K4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 52/198 (26%), Positives = 90/198 (45%)

Query:   115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT 174
             +Y+      P  L C+  + P  +   + WY+G++ ++    +S  + Q    + I    
Sbjct:  2753 EYREIVENNPAYLYCDTNAVPAAE---LTWYRGDRPLSIEDGVS--VLQGGRVLQIPLVR 2807

Query:   175 VDDAGQYSCRLIDPKSTNTT--PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS 232
              +DAG+YSC+  +    +     L      VI+  T +LVE +TV     + L C V+G+
Sbjct:  2808 AEDAGRYSCKASNEVGEDWLHYELLVLTPPVILGETEELVEEVTVNANSTVSLHCPVLGN 2867

Query:   233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292
             P PT+ W + N   F    R+++ E+        +LQ+  A +AD  +Y C    VA   
Sbjct:  2868 PAPTISW-LQNGLPFSPSPRLQVLEN------GRILQVSTAEVADAASYMC----VAENP 2916

Query:   293 SQPNEAFVYVRVKGKSFG 310
             +   E    +RV+G   G
Sbjct:  2917 AGSTEKLFTLRVQGGPAG 2934

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

RGD|1564772 Hmcn1 "hemicentin 1" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 63/271 (23%), Positives = 123/271 (45%)

Query:    51 VKWQLNGRNINQS----SV--DSGFAATANLTE-DNFKYSIHEAILESGYVQSSLFIP-R 102
             +KW  NG+ +       S+  D      A++T  +N +Y I  A+ E+G  +    +   
Sbjct:  1209 IKWLHNGKEVTGQEPGVSILEDGALLVIASVTPLNNGEY-ICVAVNEAGTTERKYNLRVH 1267

Query:   103 MNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT 162
             +  +  + +      V   ++  +L C V   P      I+WYK +  +TE++ +  ++ 
Sbjct:  1268 VPPVIKDKEHVSNVSVLVNQLA-SLYCEVEGTPSP---VIMWYKDDIQVTESSTV--QIV 1321

Query:   163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPT---AKLVETLTV 217
              +   + + K + +D G+YSC+ I+   T+     Q DF  +V++ P+   A     ++V
Sbjct:  1322 NNGKILKLFKASAEDTGRYSCKAINIAGTS-----QKDFSVNVLVPPSIQGAGSPNEVSV 1376

Query:   218 IEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
             +    + L+C V G+P P + W       F     I+LS+  +       L +  A  +D
Sbjct:  1377 VLNHNITLQCPVRGTPFPAIHWFKDGKPLFLGDPNIELSDRGQN------LHLRNARRSD 1430

Query:   278 RGNYYCHGNNVATRNSQPNEAFVYV--RVKG 306
             +G Y C  +N A + ++  +  +YV   +KG
Sbjct:  1431 KGRYQCSVSNAAGKQAKDIKLTLYVPPSIKG 1461

GO:0005021 "vascular endothelial growth factor-activated receptor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-060929-856 zgc:152904 "zgc:152904" [Danio rerio (taxid:7955)]

 Score = 152 (58.6 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 41/167 (24%), Positives = 72/167 (43%)

Query:   120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-LSGRLTQSKDSITIRKTTVDDA 178
             +Y+   T  C VTS  P  D Q+ WY    +I  + + +   +   K ++T++     D 
Sbjct:   192 DYQESVTFTC-VTSGSP--DPQVTWYWKGHAIEHSEQYVLNTMNGGKSTLTVKNIKQTDG 248

Query:   179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
             G Y CR  +   ++ + L      V ++P    +  +T +EG    + C   G P P + 
Sbjct:   249 GPYMCRASNKAGSSESQLF---LKVFVQPHITQLRNVTAVEGSAAMISCTAEGEPLPEIS 305

Query:   239 WRIGNDTYFRSQGRIKLSEHPE-KGT-ANSVLQIDEATMADRGNYYC 283
             WR  +D +  + G        E +G    S+L I    ++D G + C
Sbjct:   306 WRRASDGHSFTDGEKSKDGRVEVRGRHGKSMLTISGVQLSDWGRFDC 352

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|H9KZA3 HMCN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 51/170 (30%), Positives = 80/170 (47%)

Query:   124 PFTLKCNVTSPPPGDDYQIV-WYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
             P +L C V     G+ + ++ WYK +  + E+  L   L   K  + + K TVDDAGQYS
Sbjct:  1288 PISLFCEVF----GNPFPVISWYKEDIQVVESNTLHQILHNGK-ILKLLKATVDDAGQYS 1342

Query:   183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVET---LTVIEGEKLRLECLVVGSPPPTVEW 239
             C+ I+   ++       +  +++ P+    +T   + VI  ++  LEC   G P P + W
Sbjct:  1343 CKAINVAGSSEKLF---NLYILVPPSIIGADTPSEIAVILNQETSLECRAKGFPFPGIHW 1399

Query:   240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
                +   F     ++L E   KG    VL I  A M D+G+Y C   N A
Sbjct:  1400 FKDSMPLFLGDPNVELLE---KG---QVLHIKSARMVDKGHYQCSATNAA 1443

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	323
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-13
smart00409	85	smart00409, IG, Immunoglobulin	4e-13
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	6e-09
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	7e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-09
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	4e-08
cd00096	74	cd00096, Ig, Immunoglobulin domain	8e-08
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-07
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	6e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	8e-07
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-06
smart00409	85	smart00409, IG, Immunoglobulin	5e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	1e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	1e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	1e-04
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	2e-04
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	3e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	3e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	4e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	4e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	4e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	5e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	8e-04
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	0.001
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	0.002
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	0.002
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.002
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	0.003
cd05756	94	cd05756, Ig1_IL1R_like, First immunoglobulin (Ig)-	0.003
cd05755	100	cd05755, Ig2_ICAM-1_like, Second immunoglobulin (I	0.003
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	0.004
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	0.004

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
            ++TV EGE + L C   GSPPP V W           GR  +S         S L I  
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----TSTLTISN 57

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
            T  D G Y C     AT +S    +   + V
Sbjct: 58  VTPEDSGTYTC----AATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
            ++TV EGE + L C   GSPPP V W           GR  +S         S L I  
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----TSTLTISN 57

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
            T  D G Y C     AT +S    +   + V
Sbjct: 58  VTPEDSGTYTC----AATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           + V EGE  R  C V G P PTV W   +    RS  R K++      T    L I    
Sbjct: 10  VEVQEGESARFTCTVTGDPDPTVSWF-KDGQPLRSSDRFKVTYEGGTYT----LTISNVQ 64

Query: 275 MADRGNYYC 283
             D G Y C
Sbjct: 65  PDDEGKYTC 73

Length = 90

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 51.8 bits (124), Expect = 7e-09
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
           T+ V+ G KLRL+  + G P PTV W  G+  +  ++GR+++  + +     S   I+ A
Sbjct: 4   TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDL----SSFVIEGA 59

Query: 274 TMADRGNY 281
              D G Y
Sbjct: 60  EREDEGVY 67

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 51.3 bits (123), Expect = 7e-09
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278
           EG+ + L C   G+P P + W               L E      + S L I   ++ D 
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGK---------PLPESNRFVASGSTLTIKSVSLEDS 51

Query: 279 GNYYCHGNN 287
           G Y C   N
Sbjct: 52  GLYTCVAEN 60

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATEL----SGRLTQSKDSITIRKTTVDDAGQY 181
           TL C  + PPP     I W K  K +  +       S   +    ++TI   T++D+G Y
Sbjct: 2   TLTCLASGPPP---PTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58

Query: 182 SCR 184
           +C 
Sbjct: 59  TCV 61

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             TL C     P      I W K  K + E    S R   S  ++TI+  +++D+G Y+C
Sbjct: 4   SVTLTCPAEGNP---VPNITWLKDGKPLPE----SNRFVASGSTLTIKSVSLEDSGLYTC 56

Query: 184 R 184
            
Sbjct: 57  V 57

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 48.6 bits (115), Expect = 8e-08
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282
           + L CL  G PPPT+ W   N     S    ++       + +S L I   T+ D G Y 
Sbjct: 1   VTLTCLASGPPPPTITWLK-NGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 283 CHGNNVATRNSQ 294
           C  +N A   S 
Sbjct: 60  CVASNSAGTVSA 71

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
              C VT  P P     + W+K  + +  +            ++TI     DD G+Y+C 
Sbjct: 19  RFTCTVTGDPDP----TVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCV 74

Length = 90

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 206 KPTAKLVETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264
           KP   +  + +V  G  + L C   G P PPT+ W                      G++
Sbjct: 1   KPVITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSI---------SGGSGGLGSS 51

Query: 265 NSVLQIDEATMADRGNYYCHGNN 287
            S L +   T  D G Y C  +N
Sbjct: 52  GSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
           G  +RL+C   G+P PT+ W + +   F+ + RI   +  +K      L ++    +D G
Sbjct: 9   GSTVRLKCPASGNPRPTITW-LKDGKPFKKEHRIGGYKVRKK---KWTLILESVVPSDSG 64

Query: 280 NYYCHGNN 287
            Y C   N
Sbjct: 65  KYTCIVEN 72

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 14/84 (16%)

Query: 223 LRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
           L LEC+  G P P + W +IG +       R K          N  L+ID  +  D G Y
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGELP---ADRTKFENF------NKTLKIDNVSEEDDGEY 51

Query: 282 YCHGNNVATRNSQPNEAFVYVRVK 305
            C  +N  +  S  +   + V V+
Sbjct: 52  RCTASN--SLGSARHT--ISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 13/83 (15%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
           + P   V       TL C+    PP       WYK    ++           S++     
Sbjct: 4   LTPSPTVVFEGEDVTLTCSAPGNPP---PNYTWYKDGVPLS----------SSQNGFFTP 50

Query: 172 KTTVDDAGQYSCRLIDPKSTNTT 194
             + +D+G Y+C   +     T+
Sbjct: 51  NVSAEDSGTYTCVASNGGGGKTS 73

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 126 TLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
           TL C  +  PP    ++ WYK G K + E+   S   + S  ++TI   T +D+G Y+C 
Sbjct: 13  TLSCEASGSPP---PEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 126 TLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
           TL C  +  PP    ++ WYK G K + E+   S   + S  ++TI   T +D+G Y+C 
Sbjct: 13  TLSCEASGSPP---PEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCA 69

Length = 85

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 125 FTLKCNVTSPPPGDDYQIVWYKGNK-SITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
            TL C+V+ PP  D   + W+K  K      T  +     S  ++TI   T +D+G Y+C
Sbjct: 4   VTLTCSVSGPPQVD---VTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 184 RL 185
            +
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
               +    ++G+ + LEC  +G+P P ++WR       +  G   +    E   + +VL
Sbjct: 5   VVFPKDTYALKGQNVTLECFALGNPVPQIKWR-------KVDG--SMPSSAEISMSGAVL 55

Query: 269 QIDEATMADRGNYYCHGNNVATRN 292
           +I      D G Y C   N+  ++
Sbjct: 56  KIPNIQFEDEGTYECEAENIKGKD 79

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 18/105 (17%)

Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
           AD +V  K T  L        G+ + LEC  +G+P P + WR   +          +   
Sbjct: 2   ADINVKFKDTYALK-------GQNVTLECFALGNPVPVIRWRKILEP---------MPAT 45

Query: 259 PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
            E   + +VL+I      D G Y C   N+  +    ++A VYV+
Sbjct: 46  AEISMSGAVLKIFNIQPEDEGTYECEAENI--KGKDKHQARVYVQ 88

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 4/66 (6%)

Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
           G  + L C V G P   V W             +   E+     ++  L I   T  D G
Sbjct: 1   GSSVTLTCSVSGPPQVDVTW-FKEGKGLEESTTVGTDEN---RVSSITLTISNVTPEDSG 56

Query: 280 NYYCHG 285
            Y C  
Sbjct: 57  TYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 12/75 (16%)

Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH----PEKGTANS 266
           L + +T++EG+ L L C V G+P P V W       F++   I+LSEH     E+G   S
Sbjct: 7   LPDVVTIMEGKTLNLTCTVFGNPDPEVIW-------FKNDQDIELSEHYSVKLEQGKYAS 59

Query: 267 VLQIDEATMADRGNY 281
            L I   T  D G Y
Sbjct: 60  -LTIKGVTSEDSGKY 73

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI---KLSEHPEKGTANSVLQIDEATMA 276
              ++  C   G+P PT+ W + N   F+ + RI   K+         +  L ++    +
Sbjct: 9   ANTVKFRCPAAGNPTPTMRW-LKNGKEFKQEHRIGGYKVRN------QHWSLIMESVVPS 61

Query: 277 DRGNYYC 283
           D+GNY C
Sbjct: 62  DKGNYTC 68

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
            +LTV EGE  R  C V G P PTV W R G       + +I  +E+       S  +I 
Sbjct: 11  RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEY------KSTFEIS 64

Query: 272 EATMADRGNY 281
           +  M+D GNY
Sbjct: 65  KVQMSDEGNY 74

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 217 VIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
           V  GE   LEC    G P PTV WR           R+++ +       +  L I EA  
Sbjct: 8   VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD-------DGNLLIAEARK 60

Query: 276 ADRGNYYCHGNNVA-TRNSQP 295
           +D G Y C   N+   R S  
Sbjct: 61  SDEGTYKCVATNMVGERESAA 81

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 222 KLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
            +RLE  + G P PTV W        +  GR+++    E   +++ L I  A  +D G Y
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKP-LKLSGRVQI----ETTASSTSLVIKNAERSDSGKY 55

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)

Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH----PEKGTANS 266
           L + +T++EG+ L L C V G P P V W        ++   + LS+H     E+G   S
Sbjct: 7   LPDVVTIMEGKTLNLTCTVFGDPDPEVSW-------LKNDQALALSDHYNVKVEQGKYAS 59

Query: 267 VLQIDEATMADRGNY 281
            L I   +  D G Y
Sbjct: 60  -LTIKGVSSEDSGKY 73

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282
           L LEC+  G P P V W        R  G +      +K   N  LQ+D    +D G Y 
Sbjct: 1   LVLECIAEGLPTPEVHWD-------RIDGPL-SPNRTKKLNNNKTLQLDNVLESDDGEYV 52

Query: 283 CHGNN 287
           C   N
Sbjct: 53  CTAEN 57

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ----GRIKLSEHPEK 261
           +P    +E  T +E E++ L C   G P P + WR     +        GRI +  H   
Sbjct: 2   QPKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARV 61

Query: 262 GTANSVLQIDEATMADRGNYYCHGNN 287
               S L + +  + D G Y C  +N
Sbjct: 62  ----SSLTLKDVQLTDAGRYDCEASN 83

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSG---RLTQSKDSITIRKTTVDDAGQYSC 183
           LKC  TS  P   ++  W+K  K +    +      R  +    + I K  + D+G+Y+C
Sbjct: 3   LKCEATSEYPSLRFK--WFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTC 60

Query: 184 RLID 187
            + +
Sbjct: 61  VVEN 64

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282
           +RLEC V   PPP + W+  N+    +  RI L    +       L I  A   D G Y 
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLY---QDNCGRICLLIQNANKEDAGWYT 57

Query: 283 CHGNNVA 289
               N A
Sbjct: 58  VSAVNEA 64

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 224 RLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
           RLEC   G P P + W+    T F +    ++   PE    + V  I +  + D G Y C
Sbjct: 2   RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPE----DDVFFIVDVKIEDTGVYSC 57

Query: 284 HGNNVA 289
              N A
Sbjct: 58  TAQNTA 63

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
           G  LR EC   G+P P   W + N     S+ RI++            L+I + +++D G
Sbjct: 14  GSSLRWECKASGNPRPAYRW-LKNGQPLASENRIEVE--------AGDLRITKLSLSDSG 64

Query: 280 NYYCHGNN 287
            Y C   N
Sbjct: 65  MYQCVAEN 72

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 16/90 (17%)

Query: 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
                V EGE + L C   G+PPP   W   +     S      + +             
Sbjct: 6   PSPTVVFEGEDVTLTCSAPGNPPPNYTWY-KDGVPLSSSQNGFFTPN------------- 51

Query: 272 EATMADRGNYYCHG-NNVATRNSQPNEAFV 300
             +  D G Y C   N    + S P    V
Sbjct: 52  -VSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143233 cd05756, Ig1_IL1R_like, First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 139 DYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
              + WYK +      TE   R+ Q KD +      ++D+G Y+C
Sbjct: 33  GLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTC 77

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. Length = 94

>gnl|CDD|143232 cd05755, Ig2_ICAM-1_like, Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTV--DDAGQYS 182
           +TL+C+V    P  +  +V  +GN++++         +      TI  T    D    +S
Sbjct: 19  YTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFS 78

Query: 183 CR 184
           C 
Sbjct: 79  CE 80

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. Length = 100

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK-DSITIRKTTVDDAGQYS 182
             L C V   P   D +++W+K ++ I  +   S +L Q K  S+TI+  T +D+G+YS
Sbjct: 19  LNLTCTVFGNP---DPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYS 74

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
           G  + +EC    +P PT+ W  G +    +  RI +         +  L+I   T +D G
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTEL-LTNSSRICI-------WPDGSLEILNVTKSDEG 52

Query: 280 NYYCHGNNV 288
            Y C   N 
Sbjct: 53  KYTCFAENF 61

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
PHA02785	326	IL-beta-binding protein; Provisional	99.97
KOG4221|consensus	1381		99.96
KOG4194|consensus	873		99.96
KOG4221|consensus	1381		99.95
KOG4222|consensus	1281		99.93
KOG4222|consensus	1281		99.91
PHA02826	227	IL-1 receptor-like protein; Provisional	99.87
PHA02826	227	IL-1 receptor-like protein; Provisional	99.87
KOG4194|consensus	873		99.84
PHA02785	326	IL-beta-binding protein; Provisional	99.78
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.73
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.72
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.7
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.69
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.68
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.68
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.67
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.67
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.66
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.65
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.64
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.64
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.63
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.63
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.63
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.63
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.62
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.62
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.62
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.61
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.61
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.61
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.6
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.6
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.6
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.6
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.59
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.59
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.59
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.59
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.59
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.59
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.58
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.58
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.58
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.58
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.58
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.58
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.57
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.57
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.57
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.57
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.56
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.56
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.56
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.55
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.55
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.55
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.54
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.54
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.54
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.54
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.53
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.53
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.53
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.52
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.52
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.52
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.51
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.51
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.51
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.5
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.49
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.49
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.49
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.49
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.48
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.48
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.47
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.46
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.46
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.46
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.44
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.44
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.44
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.43
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.43
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.43
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.43
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.43
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.42
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.41
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.41
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.41
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.4
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.39
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.39
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.39
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.38
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.38
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.38
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.37
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.37
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.36
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.36
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.36
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.36
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.35
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.35
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.35
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.34
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.34
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.33
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.33
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.33
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.33
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.33
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.33
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.33
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.33
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.32
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.31
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.31
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.3
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.3
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.3
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.3
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.29
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.29
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.29
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.29
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.29
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.28
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.27
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.27
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.27
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.27
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.27
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.26
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.26
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.26
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.26
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.25
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.25
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.24
KOG3515|consensus	741		99.24
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.24
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.23
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.23
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.23
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.23
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.23
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.23
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.22
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.21
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.21
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.21
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.21
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.21
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.2
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.2
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.2
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.19
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.19
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.19
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.19
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.18
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.17
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.17
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.16
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.16
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.15
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.15
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.15
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.15
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.13
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.13
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.12
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.12
KOG3515|consensus	741		99.11
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.1
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.1
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.1
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.1
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.09
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.09
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.09
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.08
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.07
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.06
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.06
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.05
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.05
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.05
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.04
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.03
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.03
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.03
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.02
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.01
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.01
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.01
smart00409	86	IG Immunoglobulin.	99.01
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	99.0
PHA03376	221	BARF1; Provisional	99.0
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.0
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.99
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.99
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.98
PHA03376	221	BARF1; Provisional	98.96
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.96
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.94
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.92
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.9
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.89
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.89
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.88
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.88
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.87
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.86
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.86
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.86
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.86
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.86
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.79
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.78
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.78
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.78
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.76
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.76
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.75
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.75
smart00409	86	IG Immunoglobulin.	98.75
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.75
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.72
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.72
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.72
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.71
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.71
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.69
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.68
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.66
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.66
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.65
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.65
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.64
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.61
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.61
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.6
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.59
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.58
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.57
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.55
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.54
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.54
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.53
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.53
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.52
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.51
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.51
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.5
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.49
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.48
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.48
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.48
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.47
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.47
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.46
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.46
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.45
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.45
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.45
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.44
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.44
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.44
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.43
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.41
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.4
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.39
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.39
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.38
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.37
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.37
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.36
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.33
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.32
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.29
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.29
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.29
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.29
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.29
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.28
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.27
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.27
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.26
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.26
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.25
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.24
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.24
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.24
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.22
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.22
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.22
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.21
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.21
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.21
smart00407	75	IGc1 Immunoglobulin C-Type.	98.2
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.19
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.18
PHA03270	466	envelope glycoprotein C; Provisional	98.17
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.16
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.14
KOG1480|consensus	909		98.13
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.13
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.12
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.12
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.1
smart00407	75	IGc1 Immunoglobulin C-Type.	98.08
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.08
PHA03273	486	envelope glycoprotein C; Provisional	98.04
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.04
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.02
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.01
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.98
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.96
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.95
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.92
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.91
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.91
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.89
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.88
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.88
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.86
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.86
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.86
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.85
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.85
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.84
PHA03269	566	envelope glycoprotein C; Provisional	97.84
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.84
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.81
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.8
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.79
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.78
smart00406	81	IGv Immunoglobulin V-Type.	97.75
PHA03271	490	envelope glycoprotein C; Provisional	97.69
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.68
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.66
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.65
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.64
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.63
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.62
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.61
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.6
smart00406	81	IGv Immunoglobulin V-Type.	97.6
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.58
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.56
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.56
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.52
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.5
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.5
PHA03270	466	envelope glycoprotein C; Provisional	97.48
PHA03269	566	envelope glycoprotein C; Provisional	97.46
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.45
PHA02982	251	hypothetical protein; Provisional	97.44
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.43
PHA03273	486	envelope glycoprotein C; Provisional	97.36
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.33
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.28
PHA03271	490	envelope glycoprotein C; Provisional	97.26
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.22
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.2
PHA02633	63	hypothetical protein; Provisional	97.2
KOG1480|consensus	909		97.14
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.08
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.05
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.93
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.82
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.75
PHA02982	251	hypothetical protein; Provisional	96.63
PHA03042	286	CD47-like protein; Provisional	96.36
PHA02633	63	hypothetical protein; Provisional	96.2
PHA03042	286	CD47-like protein; Provisional	95.74
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.85
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.73
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	94.43
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.14
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.84
PHA02865	338	MHC-like TNF binding protein; Provisional	93.71
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	93.62
KOG4597|consensus	560		93.31
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	92.86
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	92.79
KOG0613|consensus	1205		92.64
PHA02865	338	MHC-like TNF binding protein; Provisional	92.52
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	92.52
PHA02914	500	Immunoglobulin-like domain protein; Provisional	92.25
PHA02914	500	Immunoglobulin-like domain protein; Provisional	90.24
KOG0613|consensus	1205		90.08
PHA03052	69	Hypothetical protein; Provisional	89.81
PF11049	71	KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-assoc	87.19
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	86.24
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	85.82
PHA03052	69	Hypothetical protein; Provisional	84.3
PHA03189	348	UL14 tegument protein; Provisional	83.83
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	83.79
PHA03189	348	UL14 tegument protein; Provisional	83.73

>KOG3513|consensus

Probab=100.00  E-value=5.4e-33  Score=246.94  Aligned_cols=265  Identities=19%  Similarity=0.307  Sum_probs=206.5

Q ss_pred             CCceEEEeeceEEecCCcEEEEEE--eccCceEEEEEcCcc-ceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEe
Q psy15235         21 ADGKITYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRN-INQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSS   97 (323)
Q Consensus        21 ~~~~i~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~   97 (323)
                      +...+..+.+.....|+.+.|.|.  +.|.|++.|.|.|.. +...       .........+.|...+..|+|.|.|.+
T Consensus       241 P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r-------~~~~~~~~vL~I~nv~~~D~G~Y~C~A  313 (1051)
T KOG3513|consen  241 PKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRR-------ATYSNYGKVLKIPNVQYEDAGEYECIA  313 (1051)
T ss_pred             CccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcc-------eeeeccccEEEecccCcCCCeEEEEEE
Confidence            344444555677889999999999  678899999997774 3332       122222343344433444599999999


Q ss_pred             eccCCccce--------eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc---EEecee
Q psy15235         98 LFIPRMNAI--------TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR---LTQSKD  166 (323)
Q Consensus        98 ~~~~~~~~~--------~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~---~~~~~~  166 (323)
                      .|..+....        .|.|...++...+..|+.+++.|.+.|.|   .++|+|+++|.++..    ..+   +.-...
T Consensus       314 eN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P---~p~v~WlkNg~pl~~----~~r~~~~~i~~g  386 (1051)
T KOG3513|consen  314 ENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKP---NPTVKWLKNGEPLEP----AERDPRYKIDDG  386 (1051)
T ss_pred             ecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCC---CCceEEeeCCeecCc----cCCCcceEEeCC
Confidence            998887533        33344467777788999999999999988   899999999999976    444   556678


Q ss_pred             EEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec-ceeeeec---eeEEeeCCeEEEEEEEecCCCCcEEEEEC
Q psy15235        167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK-PTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIG  242 (323)
Q Consensus       167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~-p~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~  242 (323)
                      .|.|.+++..|+|.|.|.| .|..  +.....+.|.|... |.+...+   ...+..|..+.|.|...+.|.|.++|.++
T Consensus       387 ~L~is~v~~~dsg~YQC~A-~Nk~--G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~  463 (1051)
T KOG3513|consen  387 TLIISNVQESDSGVYQCIA-ENKY--GTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKG  463 (1051)
T ss_pred             EEEEEecccccCeEEEeee-eccc--ceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcC
Confidence            8999999999999999999 8884  44667778888774 5554222   34677899999999999999999999999


Q ss_pred             CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcChh
Q psy15235        243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRV  314 (323)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~~  314 (323)
                      +.. ...++|+.+.       ..++|.|.+++.+|.|.|+|.|.|..|+    +.....|.|++++.....+
T Consensus       464 ~~~-~~~~~r~~i~-------edGtL~I~n~t~~DaG~YtC~A~N~~G~----a~~~~~L~Vkd~tri~~~P  523 (1051)
T KOG3513|consen  464 GEK-LLQSGRIRIL-------EDGTLEISNVTRSDAGKYTCVAENKLGK----AESTGNLIVKDATRITLAP  523 (1051)
T ss_pred             Ccc-cccCceEEEC-------CCCcEEecccCcccCcEEEEEEEcccCc----cceEEEEEEecCceEEecc
Confidence            884 3466888887       4899999999999999999999999977    8899999999887665433

>KOG3513|consensus

Probab=100.00  E-value=1.2e-30  Score=232.18  Aligned_cols=265  Identities=19%  Similarity=0.280  Sum_probs=205.3

Q ss_pred             EEeeceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCc
Q psy15235         26 TYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRM  103 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~  103 (323)
                      ..+.+..+..|+.++|.|.  +.|.|.|+|++||.++.......+    .....+.+.|...+.+|+|.|.|.++|..+.
T Consensus       336 ~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~----~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~  411 (1051)
T KOG3513|consen  336 QKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPR----YKIDDGTLIISNVQESDSGVYQCIAENKYGT  411 (1051)
T ss_pred             cccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcc----eEEeCCEEEEEecccccCeEEEeeeecccce
Confidence            3456788899999999999  567899999999999886522222    2345778888888888899999999998777


Q ss_pred             cceeeeeee---------CCce--eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEe
Q psy15235        104 NAITGNYDI---------EPKY--KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIR  171 (323)
Q Consensus       104 ~~~~~~~~~---------~~~~--~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~  171 (323)
                      ......+.+         .+..  ..+..|.++.|.|...+.|   .+.++|.+++..+..    ++|+. ..+++|.|.
T Consensus       412 i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP---~p~~~W~k~~~~~~~----~~r~~i~edGtL~I~  484 (1051)
T KOG3513|consen  412 IYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASP---KPKVSWLKGGEKLLQ----SGRIRILEDGTLEIS  484 (1051)
T ss_pred             EeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCC---cceEEEEcCCccccc----CceEEECCCCcEEec
Confidence            544333333         2222  2467899999999999998   899999999886666    78887 688999999


Q ss_pred             eeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCC--CCcEEEEECCeeeec
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSP--PPTVEWRIGNDTYFR  248 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~  248 (323)
                      +++.+|+|.|+|.| .|..  +.......|.|..++.+. .+.+..+..|+.++|.|.+...|  ...+.|.+||..+..
T Consensus       485 n~t~~DaG~YtC~A-~N~~--G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~  561 (1051)
T KOG3513|consen  485 NVTRSDAGKYTCVA-ENKL--GKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDF  561 (1051)
T ss_pred             ccCcccCcEEEEEE-Eccc--CccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhc
Confidence            99999999999999 7873  446677788888888776 44466788999999999997665  447999999997753


Q ss_pred             c--CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcC
Q psy15235        249 S--QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYD  312 (323)
Q Consensus       249 ~--~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~  312 (323)
                      .  ...+...    ++.....|+|.+++.+|+|.|.|+|....    .+.++...|.|.++|.+..
T Consensus       562 ~~~~~~~~~~----~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~----Ds~s~~A~l~V~gpPgpP~  619 (1051)
T KOG3513|consen  562 NPDGDHFEIN----DGSDSGRLTIANVSLEDSGKYTCVAQTAL----DSASARADLLVRGPPGPPP  619 (1051)
T ss_pred             cCCCCceEEe----CCcCccceEEEeeccccCceEEEEEEEee----cchhcccceEEecCCCCCC
Confidence            2  2222222    11123679999999999999999999977    5577777788888777654

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.97  E-value=2.3e-28  Score=201.55  Aligned_cols=245  Identities=20%  Similarity=0.293  Sum_probs=161.6

Q ss_pred             eceEEecCCcEEEEEEe-------ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccC
Q psy15235         29 GDTEIMEGAPINISCIL-------TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIP  101 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~-------~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~  101 (323)
                      ....+.+|+.+.|.|..       .+.+.++|+|+|......       ...+ ....+.+.-....|+|.|+|.+.|..
T Consensus        34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~-------~~~~-~g~~l~i~~~~~~DsG~Y~C~a~N~~  105 (326)
T PHA02785         34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRI-------IPID-NGSNMLILNPTQSDSGIYICITKNET  105 (326)
T ss_pred             chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccceE-------EEcc-CCceEEEcccCcccCeEEEEEEECCC
Confidence            34557799999999984       245789999987532211       1111 12224444444556999999999877


Q ss_pred             Cccceeeeeee----C------CceeEEecCCcEEEEEEe-----ecCCCCCCceEEEEECCeeccccccccCcEE-ece
Q psy15235        102 RMNAITGNYDI----E------PKYKVFEYRVPFTLKCNV-----TSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSK  165 (323)
Q Consensus       102 ~~~~~~~~~~~----~------~~~~~~~~g~~v~l~C~~-----~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~  165 (323)
                      +.......+.+    .      +....+.+|..+.|.|..     .+.+   .+.++|+++.. + .    ..++. ...
T Consensus       106 g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~---~~~i~W~k~~~-~-~----~~r~~~~~~  176 (326)
T PHA02785        106 YCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNV---NADIIWSGHRR-L-R----NKRLKQRTP  176 (326)
T ss_pred             cceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCC---CceEEEccCCc-c-C----CcceEecCC
Confidence            65443333322    1      122335689999999972     3445   68999988642 2 2    34443 335


Q ss_pred             eEEEEeeeecCCCeeEEEEEEcCCCCCCCCce--eeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCC---cE
Q psy15235        166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA--QADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPP---TV  237 (323)
Q Consensus       166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~--~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~  237 (323)
                      ..|.|.+++.+|+|.|+|.+ .+..+......  .+.+.|..   +|.+..+....+..|+.++|.|.+.|.|.+   .+
T Consensus       177 ~~L~i~~v~~~d~G~Y~C~~-~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v  255 (326)
T PHA02785        177 GIITIEDVRKNDAGYYTCVL-KYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADV  255 (326)
T ss_pred             CeEEEeecChhhCeEEEEEE-EeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceE
Confidence            68999999999999999999 66644332222  33444432   455555666777889999999999988764   79


Q ss_pred             EEEECCeeeeccC----CeeeeecCCC----CCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        238 EWRIGNDTYFRSQ----GRIKLSEHPE----KGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       238 ~W~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .|++||..+...+    .++.......    .......|+|.+++.+|.|+|+|.|.|..|.
T Consensus       256 ~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~  317 (326)
T PHA02785        256 FWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI  317 (326)
T ss_pred             EEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence            9999998774321    2333221000    0112568999999999999999999998843

>KOG4221|consensus

Probab=99.96  E-value=5.7e-27  Score=208.50  Aligned_cols=256  Identities=23%  Similarity=0.390  Sum_probs=190.4

Q ss_pred             EEecCCcEEEEEEe--cc--CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec-----ccCcceEEEeeccCC
Q psy15235         32 EIMEGAPINISCIL--TI--FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA-----ILESGYVQSSLFIPR  102 (323)
Q Consensus        32 ~v~~G~~v~L~C~~--~~--~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~G~Y~C~~~~~~~  102 (323)
                      .+.+|.++.|.|..  ..  .+.+.|.++|..+.........    -..++++.+.....     -++|.|.|.++-...
T Consensus        50 d~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~----~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~  125 (1381)
T KOG4221|consen   50 DAMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQ----LLSNGSLYISSVLASKHNKVDEGVYQCLATVEDV  125 (1381)
T ss_pred             ccccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHh----hccCCceeEeeecccccccccCceEEEEEEcccc
Confidence            44899999999993  23  6789999999877764111111    12245555544444     339999999986532


Q ss_pred             ccce--e--------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEe
Q psy15235        103 MNAI--T--------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIR  171 (323)
Q Consensus       103 ~~~~--~--------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~  171 (323)
                      ...+  .        +.+...+....+..|+++.|.|.+.+.+   .+.+.|.++..++..    +.++. ..+..|.|.
T Consensus       126 gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~---~p~i~w~kn~~pl~~----~~r~i~lpsG~L~I~  198 (1381)
T KOG4221|consen  126 GSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEP---VPTIMWLKNDQPLPL----DSRVIVLPSGALEIS  198 (1381)
T ss_pred             ceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCcc---CceeEEecccccccC----CCcEEEcCCCcEEec
Confidence            2211  1        1222255566688899999999999966   779999999998877    66665 788899999


Q ss_pred             eeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecce-------eeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCe
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-------AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND  244 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~-------~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~  244 (323)
                      ++++.|.|.|+|.+ .+....+. +..+.|+|...|.       +..+....+.+|+++.|.|.+.|.|.|.++|.+|+.
T Consensus       199 ~~qp~d~g~yrc~v-t~g~~~r~-S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~  276 (1381)
T KOG4221|consen  199 GLQPSDTGEYRCVV-TGGASQRT-SNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGE  276 (1381)
T ss_pred             ccccCCCceEEEEE-ecCCcCCc-cceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCe
Confidence            99999999999999 66644433 6667777774332       234556778899999999999999999999999999


Q ss_pred             eeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      .+...+.++.+.       ..+.|.|.+++.+|+|.|+|.|.|..    .+..+...|.|..+|...
T Consensus       277 ~i~~ds~rivl~-------g~~slliS~a~~~dSg~YtC~Atn~~----D~idasaev~V~a~P~~~  332 (1381)
T KOG4221|consen  277 KISVDSYRIVLV-------GGSSLLISNATDDDSGKYTCRATNTN----DSIDASAEVTVLAPPGFT  332 (1381)
T ss_pred             eeeecceEEEEe-------cccceEEeccccccCceEEEEecCCC----cccccceEEEEEcCCCCC
Confidence            987666666655       57889999999999999999999955    446666677776665544

>KOG4194|consensus

Probab=99.96  E-value=1.9e-27  Score=198.18  Aligned_cols=263  Identities=19%  Similarity=0.298  Sum_probs=188.1

Q ss_pred             EEeeceEEecCCcEEEEEEecc----CceEEEEEcCccceeeccCcceE-EE-------eeee--CCeEEEEEeecccCc
Q psy15235         26 TYFGDTEIMEGAPINISCILTI----FEQVKWQLNGRNINQSSVDSGFA-AT-------ANLT--EDNFKYSIHEAILES   91 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g~~~~~~~~~~~~~-~~-------~~~~--~~~~~l~i~~~~~~G   91 (323)
                      +.|.++.+..|+.++|+|.+..    +..+.|.++.+........+... ..       .+..  .+.+.|....-+++|
T Consensus       508 ~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~g  587 (873)
T KOG4194|consen  508 TQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEG  587 (873)
T ss_pred             cCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCc
Confidence            4566677889999999999543    35899999776433321111110 00       1111  333444444445599


Q ss_pred             ceEEEeeccCCcc-cee--------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCee-ccccccccCcE
Q psy15235         92 GYVQSSLFIPRMN-AIT--------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS-ITEATELSGRL  161 (323)
Q Consensus        92 ~Y~C~~~~~~~~~-~~~--------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~-~~~~~~~~~~~  161 (323)
                      .|.|.++|..++. ...        |.|.-.|.......|+.+.|.|.+.|.|   .|.|.|.++|.. .+...  ..|.
T Consensus       588 rYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P---~PeIawqkdggtdFPAA~--eRRl  662 (873)
T KOG4194|consen  588 RYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHP---RPEIAWQKDGGTDFPAAR--ERRL  662 (873)
T ss_pred             eEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCC---CcceeehhcCCCCCchhh--hhee
Confidence            9999999987774 222        2233355555677899999999999999   899999998865 43311  2233


Q ss_pred             E--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeec-eeEEeeCCeEEEEEEEecCCC-CcE
Q psy15235        162 T--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE-TLTVIEGEKLRLECLVVGSPP-PTV  237 (323)
Q Consensus       162 ~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~p~-~~~  237 (323)
                      .  .....+.|.+++.+|.|.|+|.| .|..  +..++.++++|...|....|. ...+..|+++.|.|.+.+.|. |.+
T Consensus       663 ~Vmpedd~f~Itnvk~eD~GiYtC~A-~n~A--G~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~  739 (873)
T KOG4194|consen  663 HVMPEDDVFFITNVKIEDQGIYTCTA-QNVA--GQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRL  739 (873)
T ss_pred             eecCCCCEEEEecccccccceeEEee-eccc--cceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccc
Confidence            3  66778999999999999999999 7884  457888899999988776554 566889999999999999877 899


Q ss_pred             EEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235        238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       238 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      .|+++++++.... +.+..      ....-|++.+...+|+|.|+|...|..|.    ....+.+.+..+
T Consensus       740 ~W~k~d~pil~t~-rh~f~------d~dQllvv~~~~~~daG~yTcem~~~~~~----~~~~i~l~~~~~  798 (873)
T KOG4194|consen  740 EWFKEDKPILITE-RHTFP------DGDQLLVVKENLVEDAGIYTCEMSNTLGT----ERIHICLLVYQK  798 (873)
T ss_pred             cccCCCCceEEee-cccCC------CCCeEEEEEehhhhhcceEEEEEEeeccc----eeeEEEEEEeec
Confidence            9999998875442 22222      14678999999999999999999999976    555555554443

>KOG4221|consensus

Probab=99.95  E-value=2.9e-27  Score=210.31  Aligned_cols=254  Identities=23%  Similarity=0.303  Sum_probs=194.0

Q ss_pred             EeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc
Q psy15235         27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN  104 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~  104 (323)
                      .+.+..+..|+++.|.|.+  .+.+.++|.++..++...    . .+.... ++.+.|.-..-.|.|.|+|.+++.....
T Consensus       146 ~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~----~-r~i~lp-sG~L~I~~~qp~d~g~yrc~vt~g~~~r  219 (1381)
T KOG4221|consen  146 QPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD----S-RVIVLP-SGALEISGLQPSDTGEYRCVVTGGASQR  219 (1381)
T ss_pred             CccceeEecCCcEEEEEEEcCccCceeEEecccccccCC----C-cEEEcC-CCcEEecccccCCCceEEEEEecCCcCC
Confidence            3456789999999999994  456789999999877775    2 222222 4444444444556999999998765442


Q ss_pred             -----ceee----------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEE
Q psy15235        105 -----AITG----------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSI  168 (323)
Q Consensus       105 -----~~~~----------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l  168 (323)
                           .+..          .|...|...++.+|+++.|.|.+.+.+   .+.|.|.|||..+...   +.++. .....|
T Consensus       220 ~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p---~p~v~Wlrng~~i~~d---s~rivl~g~~sl  293 (1381)
T KOG4221|consen  220 TSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVP---KPSVKWLRNGEKISVD---SYRIVLVGGSSL  293 (1381)
T ss_pred             ccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCC---CCceEEeeCCeeeeec---ceEEEEecccce
Confidence                 1111          122266667788999999999999999   8999999999988761   23444 567889


Q ss_pred             EEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235        169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF  247 (323)
Q Consensus       169 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~  247 (323)
                      .|.+++.+|+|.|+|+| +|.  .....+...++|+.+|.+. .+......++.++++.|.+.|.|.|.+.|++||..+.
T Consensus       294 liS~a~~~dSg~YtC~A-tn~--~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~i  370 (1381)
T KOG4221|consen  294 LISNATDDDSGKYTCRA-TNT--NDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRII  370 (1381)
T ss_pred             EEeccccccCceEEEEe-cCC--CcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccC
Confidence            99999999999999999 774  4567788899999988766 5556777889999999999999999999999999876


Q ss_pred             ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235        248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      . ...+++.       ....|.|..+-..|.|.|.|.+.|..|.    ....+.|.+...
T Consensus       371 p-sdy~ki~-------~~~~lrIlgi~~sdeg~yQcvaen~~G~----a~a~a~l~vv~~  418 (1381)
T KOG4221|consen  371 P-SDYFKIV-------GGGNLRILGIVKSDEGFYQCVAENDAGS----AQAAAQLEVVPQ  418 (1381)
T ss_pred             c-ccceEec-------CCCCcEEEEEecccchhhhhhhccCccc----ccchhhheeccC
Confidence            5 4555554       2333999999999999999999999966    566666644444

>KOG4222|consensus

Probab=99.93  E-value=5.9e-25  Score=194.73  Aligned_cols=273  Identities=20%  Similarity=0.285  Sum_probs=199.2

Q ss_pred             CceEEEeeceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEE-EEEee---cc-cCcceE
Q psy15235         22 DGKITYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFK-YSIHE---AI-LESGYV   94 (323)
Q Consensus        22 ~~~i~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~---~~-~~G~Y~   94 (323)
                      ...+..+.++.+..|+.++|.|.  +.|.+.++|+|+|...........   ++...++.+. +.+..   .. |.|.|+
T Consensus        32 p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~sh---R~~lp~gsLf~l~~ahg~~a~~d~G~y~  108 (1281)
T KOG4222|consen   32 PRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSH---RFLLPDGSLFLLRLAHGKKAGHDHGVYS  108 (1281)
T ss_pred             CceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCc---ceecCCccEEEEecccCCcccCCCceeE
Confidence            44455677888999999999999  456789999999964433211111   1122233332 22221   11 389999


Q ss_pred             EEeeccCCcc----------ceeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-e
Q psy15235         95 QSSLFIPRMN----------AITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-Q  163 (323)
Q Consensus        95 C~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~  163 (323)
                      |.+.+..+..          .+...+.+.+.-..+..|+.+.|.|.-....|  .+.+.|.|||+++..  ....++. .
T Consensus       109 cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghp--eptvSw~Kdg~pl~~--~~~~~~~li  184 (1281)
T KOG4222|consen  109 CVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHP--EPTVSWVKDGKPLDH--YDVPIIALI  184 (1281)
T ss_pred             eeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCC--CCcceeecCCCcccc--ccceeEEEe
Confidence            9998876553          23334444566666778999999998755444  789999999998862  1122332 6


Q ss_pred             ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEEC
Q psy15235        164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIG  242 (323)
Q Consensus       164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~  242 (323)
                      ....|.|.++...|+|.|.|.+ +|..+.. .+....+.|+.+|... .+.+..+..|..+.+.|.+.|.|.|.+.|.++
T Consensus       185 sgG~LlIsnvrksD~GtY~CVa-tNmvG~R-eS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~  262 (1281)
T KOG4222|consen  185 SGGNLLISNVRKSDEGTYACVA-TNMVGER-ESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKD  262 (1281)
T ss_pred             cCCcEEEeccccCCCceeeeee-ccccccc-ccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeecc
Confidence            6788999999999999999999 8886553 5567789999988665 55577788899999999999999999999998


Q ss_pred             CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcChhh
Q psy15235        243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVE  315 (323)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~~~  315 (323)
                      +..+...  ++.+..      ...+|.|.+++..|.|.|.|.+.|..|.    -....++.|+++|.-..++.
T Consensus       263 ~~~~P~~--ry~i~~------d~qtl~i~r~tp~deg~y~C~a~n~vG~----l~asa~ltV~apP~f~kkp~  323 (1281)
T KOG4222|consen  263 DPSLPRS--RYSILD------DTQTLRIDRVTPTDEGTYVCPAENLVGG----LEASATLTVQAPPSFGKKPR  323 (1281)
T ss_pred             CCCCCcc--ceeeee------ccccccccccCCCcccceeeeccccccc----cccccceEEecCcccccccC
Confidence            7776533  333331      2588999999999999999999999977    67777888888776655443

>KOG4222|consensus

Probab=99.91  E-value=1.2e-23  Score=186.50  Aligned_cols=243  Identities=21%  Similarity=0.307  Sum_probs=190.0

Q ss_pred             eeceEEecCCcEEEEEE---eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc
Q psy15235         28 FGDTEIMEGAPINISCI---LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN  104 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~---~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~  104 (323)
                      +....+..|+.++|+|.   +.+.+.+.|.|+|+.+...    ....+.....+++.|...+-+|+|.|.|.++|..+..
T Consensus       138 prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~----~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~R  213 (1281)
T KOG4222|consen  138 PRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHY----DVPIIALISGGNLLISNVRKSDEGTYACVATNMVGER  213 (1281)
T ss_pred             cccccccccceeEEeccCCCCCCCCcceeecCCCccccc----cceeEEEecCCcEEEeccccCCCceeeeeeccccccc
Confidence            44577889999999998   5677899999999988843    1222233457777677667777999999999987664


Q ss_pred             c---------eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeee
Q psy15235        105 A---------ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKT  173 (323)
Q Consensus       105 ~---------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~  173 (323)
                      .         ..+.+...+....+..|..+.+.|.+.|.|   .+++.|.+++..+..     .++.  ..+.++.|.++
T Consensus       214 eS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP---~P~Vrwkk~~~~~P~-----~ry~i~~d~qtl~i~r~  285 (1281)
T KOG4222|consen  214 ESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDP---QPTVRWKKDDPSLPR-----SRYSILDDTQTLRIDRV  285 (1281)
T ss_pred             ccccceeeeccCCccccccccceeecccccccccccCCCC---CCceeeeccCCCCCc-----cceeeeecccccccccc
Confidence            1         122333366666788899999999999999   899999998777764     4443  55689999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee-----
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF-----  247 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~-----  247 (323)
                      +..|.|.|.|.+ .|..  +.......++|+.+|... .+....+..|..++|.|.+.|+|+|.+.|.+.+....     
T Consensus       286 tp~deg~y~C~a-~n~v--G~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~  362 (1281)
T KOG4222|consen  286 TPTDEGTYVCPA-ENLV--GGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSAS  362 (1281)
T ss_pred             CCCcccceeeec-cccc--cccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCC
Confidence            999999999999 7884  446778889999988665 5556778889999999999999999999999876422     


Q ss_pred             --ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        248 --RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       248 --~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                        ..+.+..+.       ...+|+|.+++..|.|.|.|...+..|.+
T Consensus       363 p~~~~~r~svs-------~~g~L~it~v~~~d~g~Yvcq~~~~~~ss  402 (1281)
T KOG4222|consen  363 PPSSNGRGSVS-------PTGTLTITNVRQSDEGYYVCQTQTSAGSS  402 (1281)
T ss_pred             CCCcCccceec-------CCCCcccccccccccceEeeccccccccc
Confidence              123344444       45699999999999999999999888763

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.87  E-value=1e-20  Score=146.76  Aligned_cols=158  Identities=18%  Similarity=0.272  Sum_probs=111.2

Q ss_pred             eEEecCCcEEEEEEeecCCC--------CCCceEEEEECCeecccc---cc------ccCcEEeceeEEEEeeeecCCCe
Q psy15235        117 KVFEYRVPFTLKCNVTSPPP--------GDDYQIVWYKGNKSITEA---TE------LSGRLTQSKDSITIRKTTVDDAG  179 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~--------~~~~~i~W~~~~~~~~~~---~~------~~~~~~~~~~~l~i~~~~~~d~G  179 (323)
                      ..+.+|+++.|.|.+.+.++        ...+++.|+|++......   ..      ...++......|.|.+++.+|+|
T Consensus        32 ~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG  111 (227)
T PHA02826         32 VYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEG  111 (227)
T ss_pred             EEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCE
Confidence            44678999999999866431        115699999987542110   00      00111123568999999999999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEe-----cCCCCcEEEEECCeeeeccCCeee
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-----GSPPPTVEWRIGNDTYFRSQGRIK  254 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~~~W~~~~~~~~~~~~~~~  254 (323)
                      .|.|.+ .|..  ......+.|.|..++     ....+.+|+.+.|.|.+.     +.|.|++.|++++..+... .++.
T Consensus       112 ~Y~C~a-~N~~--~~~~~~i~L~V~~~~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~-~r~~  182 (227)
T PHA02826        112 IYICTI-SSGN--ICEESTIRLTFDSGT-----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT-DRIQ  182 (227)
T ss_pred             EEEEEE-EECC--cceEEEEEEEEecCC-----ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC-CCEE
Confidence            999999 6653  234455555553322     234567899999999985     3457899999999988633 4555


Q ss_pred             eecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       255 ~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      +..      ...+|.|.+++.+|+|.|+|.|....
T Consensus       183 ~~~------~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        183 LRN------NNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EeC------CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            441      24689999999999999999999976

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.87  E-value=7.8e-21  Score=147.47  Aligned_cols=155  Identities=19%  Similarity=0.226  Sum_probs=102.8

Q ss_pred             eeceEEecCCcEEEEEEec-------------cCceEEEEEcCccceeeccCcc---eEEEeee-eCCeEEEEEeec--c
Q psy15235         28 FGDTEIMEGAPINISCILT-------------IFEQVKWQLNGRNINQSSVDSG---FAATANL-TEDNFKYSIHEA--I   88 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~-------------~~~~v~W~~~g~~~~~~~~~~~---~~~~~~~-~~~~~~l~i~~~--~   88 (323)
                      ..++.+.+|++|.|.|.+.             ....+.|+|++...--.....+   .....+. ......|.|.++  .
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~  108 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI  108 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence            4668899999999999952             2358999998653211100000   0000010 111234555555  4


Q ss_pred             cCcceEEEeeccCCccceeeeeee--CCceeEEecCCcEEEEEEeecCCC--CCCceEEEEECCeeccccccccCcEE--
Q psy15235         89 LESGYVQSSLFIPRMNAITGNYDI--EPKYKVFEYRVPFTLKCNVTSPPP--GDDYQIVWYKGNKSITEATELSGRLT--  162 (323)
Q Consensus        89 ~~G~Y~C~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~v~l~C~~~~~~~--~~~~~i~W~~~~~~~~~~~~~~~~~~--  162 (323)
                      |+|.|+|.+.+..+.......+.+  .+....+.+|+.+.|.|.+.+.++  ...++|+|+|+|.++..    ..++.  
T Consensus       109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~----~~r~~~~  184 (227)
T PHA02826        109 DEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY----TDRIQLR  184 (227)
T ss_pred             HCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC----CCCEEEe
Confidence            599999999997766555555544  233344678999999999864321  00579999999999876    45554  


Q ss_pred             eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        163 QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       163 ~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .....|.|.+++.+|+|.|+|.++
T Consensus       185 ~~~~~L~I~~V~~~DsG~YtC~a~  208 (227)
T PHA02826        185 NNNSTLVIKSATHDDSGIYTCNLR  208 (227)
T ss_pred             CCCCEEEECcCCHHhCEEEEEEEE
Confidence            345689999999999999999994

>KOG4194|consensus

Probab=99.84  E-value=4.8e-20  Score=154.45  Aligned_cols=188  Identities=23%  Similarity=0.384  Sum_probs=142.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc----------cccccCcEE---eceeEEEEeeeecCCCe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE----------ATELSGRLT---QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~----------~~~~~~~~~---~~~~~l~i~~~~~~d~G  179 (323)
                      .|....+-.|+.++++|.+.+.... +.++.|.+|+.....          +....+.+.   .....|.+.+++-.|+|
T Consensus       509 qPe~~~al~g~nirftC~a~sssas-plsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~g  587 (873)
T KOG4194|consen  509 QPETVSALIGENIRFTCNAYSSSAS-PLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEG  587 (873)
T ss_pred             CchHhhhhhccceEEEEEeccCCCC-CceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCc
Confidence            4444446679999999999773322 679999998763322          000001111   34567899999999999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCee-eec-cCCeeeee
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT-YFR-SQGRIKLS  256 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~-~~~-~~~~~~~~  256 (323)
                      .|.|.+ +|..|. ..+..+.++|...|... .|.+.+...|+.+.|.|.+.|.|.|++.|.++|.. +.. ...|.++.
T Consensus       588 rYQCVv-tN~FGS-tysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vm  665 (873)
T KOG4194|consen  588 RYQCVV-TNHFGS-TYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVM  665 (873)
T ss_pred             eEEEEE-ecccCc-chhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeec
Confidence            999999 677544 46677888888877655 77788999999999999999999999999998876 443 23455555


Q ss_pred             cCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235        257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDR  313 (323)
Q Consensus       257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~  313 (323)
                        +    ..-.+.|.+++.+|.|.|+|.|.|.+|.    .++..+|.|-+.|....+
T Consensus       666 --p----edd~f~Itnvk~eD~GiYtC~A~n~AG~----isanAtL~V~e~p~f~~P  712 (873)
T KOG4194|consen  666 --P----EDDVFFITNVKIEDQGIYTCTAQNVAGQ----ISANATLTVLETPSFSIP  712 (873)
T ss_pred             --C----CCCEEEEecccccccceeEEeeeccccc----eeeceEEEEecCCccccc
Confidence              2    3567889999999999999999999976    888888999888776544

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.78  E-value=5.3e-18  Score=140.21  Aligned_cols=166  Identities=15%  Similarity=0.244  Sum_probs=113.1

Q ss_pred             EecCCcEEEEEEe-----ecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        119 FEYRVPFTLKCNV-----TSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       119 ~~~g~~v~l~C~~-----~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      +.+|+.+.|.|.+     .+.+   .+++.|+|+|.....      ... .....|.|.++..+|+|.|+|.+ .|..+.
T Consensus        38 ~~~ge~~~l~C~~~~~~~~g~p---~~~i~W~K~g~~~~~------~~~~~~g~~l~i~~~~~~DsG~Y~C~a-~N~~g~  107 (326)
T PHA02785         38 ELENEPVILPCPQINTLSSGYN---ILDILWEKRGADNDR------IIPIDNGSNMLILNPTQSDSGIYICIT-KNETYC  107 (326)
T ss_pred             hhcCCCEEEECCCccccccCCC---CceEEEEECCCccce------EEEccCCceEEEcccCcccCeEEEEEE-ECCCcc
Confidence            4469999999987     5666   689999998743211      111 23345789999999999999999 677433


Q ss_pred             CCCceeeeeEEEec--ceee-eeceeEEeeCCeEEEEEEE-----ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCc
Q psy15235        193 TTPLAQADFDVIMK--PTAK-LVETLTVIEGEKLRLECLV-----VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA  264 (323)
Q Consensus       193 ~~~~~~~~l~v~~~--p~~~-~~~~~~~~~g~~~~l~C~~-----~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  264 (323)
                        ...++.|+|...  +.+. ......+.+|..+.|.|..     .++|++.+.|+++.. +  ...++...       .
T Consensus       108 --~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~--~~~r~~~~-------~  175 (326)
T PHA02785        108 --DMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L--RNKRLKQR-------T  175 (326)
T ss_pred             --eEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c--CCcceEec-------C
Confidence              445666666543  2222 2223456689999999972     457889999987642 2  22344333       2


Q ss_pred             ceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      .+.|.|.+++.+|.|.|+|.|.|..|.........+.|.|..
T Consensus       176 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~  217 (326)
T PHA02785        176 PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD  217 (326)
T ss_pred             CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec
Confidence            568999999999999999999999865211223455566643

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.73  E-value=8.7e-17  Score=106.44  Aligned_cols=87  Identities=22%  Similarity=0.316  Sum_probs=71.1

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF  299 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~  299 (323)
                      |+.++|.|.+.|.|++.+.|++++..+.....++.+.....+....++|.|.++..+|+|.|+|.|.|..|.    ....
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~----~~~~   76 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE----DRGI   76 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc----ceEE
Confidence            789999999999999999999999887544445555422223334588999999999999999999999966    8889


Q ss_pred             EEEEEcceecC
Q psy15235        300 VYVRVKGKSFG  310 (323)
Q Consensus       300 ~~l~v~~~~~~  310 (323)
                      +.|.|.++|.+
T Consensus        77 ~~L~V~~~P~~   87 (88)
T cd05735          77 IQLTVQEPPDP   87 (88)
T ss_pred             EEEEEeCCCCC
Confidence            99999888764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.72  E-value=1.5e-16  Score=107.42  Aligned_cols=92  Identities=26%  Similarity=0.295  Sum_probs=76.6

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.+..+..|+.+.|.|.+.|.|++.+.|++++..+... .++.+..  ..  ..+.|+|.++..+|+|.|+|.|.|..|
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~-~~~~~~~--~~--~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG-EGIKIEN--TE--NSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC-CcEEEEe--cC--CeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            455677899999999999999999999999999998643 3444431  11  367899999999999999999999996


Q ss_pred             CCCCCceeEEEEEEcceecCc
Q psy15235        291 RNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      .    ..+.+.|.|.++|.+.
T Consensus        81 ~----~~~~~~l~V~~~P~pP   97 (98)
T cd05762          81 S----RQAQVNLTVVDKPDPP   97 (98)
T ss_pred             c----eeEEEEEEEecCCCCC
Confidence            6    8889999999888653

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.70  E-value=5.2e-16  Score=102.16  Aligned_cols=83  Identities=33%  Similarity=0.604  Sum_probs=68.7

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS  293 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~  293 (323)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+.....++.+...  .  ..+.|.|.++..+|+|.|+|.|.|..|.  
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~--~--~~~~L~I~~~~~~D~G~Y~c~a~N~~G~--   77 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY--K--DLSSFVIEGAEREDEGVYTITVTNPVGE--   77 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEc--C--CeEEEEECCCccCcCEEEEEEEEeCCCc--
Confidence            356788999999999999999999999999988755556655421  1  3578999999999999999999999966  


Q ss_pred             CCceeEEEEEE
Q psy15235        294 QPNEAFVYVRV  304 (323)
Q Consensus       294 ~~~~~~~~l~v  304 (323)
                        ....+.|.|
T Consensus        78 --~~~~~~l~V   86 (86)
T cd05894          78 --DHASLFVKV   86 (86)
T ss_pred             --EEEEEEEEC
Confidence              777777764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.69  E-value=5.4e-16  Score=104.79  Aligned_cols=88  Identities=25%  Similarity=0.305  Sum_probs=68.2

Q ss_pred             eeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        214 TLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      ...+.+|+++.|.|.+.| .|+|.+.|+|||..+..............+....+.|.|..+..+|+|.|+|.|.|..|. 
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~-   90 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS-   90 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc-
Confidence            466788999999999999 788999999999988643332222210011123588999999999999999999999966 


Q ss_pred             CCCceeEEEEEEc
Q psy15235        293 SQPNEAFVYVRVK  305 (323)
Q Consensus       293 ~~~~~~~~~l~v~  305 (323)
                         ....+.|.|.
T Consensus        91 ---~~~t~~L~V~  100 (101)
T cd04975          91 ---KSLTFELYVN  100 (101)
T ss_pred             ---EEEEEEEEEE
Confidence               7788888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.68  E-value=5.1e-16  Score=107.07  Aligned_cols=86  Identities=14%  Similarity=0.203  Sum_probs=69.3

Q ss_pred             eCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccCCCCCce
Q psy15235        219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATRNSQPNE  297 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~~~~~~~  297 (323)
                      .|..+.|.|.+.|.|.+.+.|++++..+...+.++.+..........+.|+|.++. .+|.|.|+|.|.|..|.    ..
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~----~~   97 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE----DS   97 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc----Cc
Confidence            46889999999999999999999999886555555443222222335789999997 58999999999999966    88


Q ss_pred             eEEEEEEccee
Q psy15235        298 AFVYVRVKGKS  308 (323)
Q Consensus       298 ~~~~l~v~~~~  308 (323)
                      ..+.|.|.+.|
T Consensus        98 ~~i~L~~~~~p  108 (109)
T cd05773          98 LDIQLVSTSRP  108 (109)
T ss_pred             EEEEEEecCCC
Confidence            99999998876

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.68  E-value=7.4e-16  Score=102.06  Aligned_cols=82  Identities=24%  Similarity=0.518  Sum_probs=66.5

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+... .++..        .+..|.|.+++.+|+|.|+|.|.|..|
T Consensus         7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~-~~~~~--------~~~~L~I~~v~~~D~G~Y~C~A~N~~G   77 (88)
T cd05851           7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT-AEISM--------SGAVLKIFNIQPEDEGTYECEAENIKG   77 (88)
T ss_pred             ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC-CEEec--------CCCEEEECcCChhhCEEEEEEEEcCCC
Confidence            344667889999999999999999999999998776432 22222        246899999999999999999999996


Q ss_pred             CCCCCceeEEEEEEc
Q psy15235        291 RNSQPNEAFVYVRVK  305 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~  305 (323)
                      .    ....+.|.|+
T Consensus        78 ~----~~~~~~l~V~   88 (88)
T cd05851          78 K----DKHQARVYVQ   88 (88)
T ss_pred             c----eEEEEEEEEC
Confidence            6    7777777764

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.67  E-value=4.3e-16  Score=99.87  Aligned_cols=74  Identities=23%  Similarity=0.510  Sum_probs=61.5

Q ss_pred             eCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235        219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA  298 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~  298 (323)
                      +|+.+.|.|.+.|+|.|.+.|++++..+... .+..+.       ...+|.|.+++.+|.|.|+|.|.|..|.    ...
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~-~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~----~~~   68 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD-RRHLVL-------SSGTLRISRVALHDQGQYECQAVNIVGS----QRT   68 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCC-CCeEEc-------cCCeEEEeeCCHHhCEEEEEEEEeCCCc----eeE
Confidence            5899999999999999999999999887543 333333       3568999999999999999999999966    777


Q ss_pred             EEEEEE
Q psy15235        299 FVYVRV  304 (323)
Q Consensus       299 ~~~l~v  304 (323)
                      .+.|.|
T Consensus        69 ~~~L~V   74 (74)
T cd05745          69 VAQLTV   74 (74)
T ss_pred             EEEEeC
Confidence            777754

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.67  E-value=5.9e-16  Score=98.63  Aligned_cols=75  Identities=25%  Similarity=0.444  Sum_probs=60.6

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      +.|.|.+.|.|.|.+.|++++..+.....++.+..  .+. ...+|.|.++..+|+|.|+|.|.|..|.    ....+.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~--~~~-g~~~L~I~~~~~~D~G~Y~C~A~N~~G~----~~~~a~L   73 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQ--DNS-GRVTLLIKNVNKKDAGWYTVSAVNEAGV----ATCHARL   73 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEE--cCC-CcEEEEECCCChhhCEEEEEEEEcCcCe----EEEEEEE
Confidence            47999999999999999999998875555666542  111 1358999999999999999999999966    7777777


Q ss_pred             EE
Q psy15235        303 RV  304 (323)
Q Consensus       303 ~v  304 (323)
                      .|
T Consensus        74 ~V   75 (75)
T cd05892          74 DV   75 (75)
T ss_pred             eC
Confidence            64

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.66  E-value=1.2e-15  Score=103.13  Aligned_cols=83  Identities=24%  Similarity=0.390  Sum_probs=68.3

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS  293 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~  293 (323)
                      +..+..|+.+.|.|.+.|.|.|.+.|+++|..+.....++....      ..+.|+|.+++.+|.|.|+|.|.|..|.  
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~--   83 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE------DGSEMTILDVDKLDEAEYTCIAENKAGE--   83 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeC------CCCEEEECCCChhhCEEEEEEEEcCCCe--
Confidence            45678899999999999999999999999988765434444331      3467999999999999999999999966  


Q ss_pred             CCceeEEEEEEcc
Q psy15235        294 QPNEAFVYVRVKG  306 (323)
Q Consensus       294 ~~~~~~~~l~v~~  306 (323)
                        ....+.|.|..
T Consensus        84 --~~~~~~L~V~~   94 (95)
T cd05730          84 --QEAEIHLKVFA   94 (95)
T ss_pred             --EEEEEEEEEEe
Confidence              77888887754

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.65  E-value=3.2e-15  Score=100.20  Aligned_cols=86  Identities=29%  Similarity=0.451  Sum_probs=67.6

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ++....+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+..  ..+ ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~-~~~~~~~--~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS-DHYNVKV--EQG-KYASLTIKGVSSEDSGKYGIVVKNKYG   82 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC-CCEEEEE--cCC-CEEEEEEccCChhhCEEEEEEEEECCC
Confidence            445567889999999999999999999999999888643 3333331  111 246799999999999999999999996


Q ss_pred             CCCCCceeEEEEEE
Q psy15235        291 RNSQPNEAFVYVRV  304 (323)
Q Consensus       291 ~~~~~~~~~~~l~v  304 (323)
                      .    ....+.|.|
T Consensus        83 ~----~~~~~~v~v   92 (92)
T cd05737          83 G----ETVDVTVSV   92 (92)
T ss_pred             c----ceEEEEEeC
Confidence            6    777777654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.64  E-value=1.1e-15  Score=97.48  Aligned_cols=75  Identities=28%  Similarity=0.452  Sum_probs=60.2

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      +.|.|.+.|.|.|.+.|++++..+.....++.+..  .+. ...+|.|.++..+|+|.|+|.|.|..|.    ....+.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~--~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~----~~~~a~L   73 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ--DNC-GYICLLIQGATKEDAGWYTVSAKNEAGI----VSCTARL   73 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE--cCC-CEEEEEECCCCHHHCEEEEEEEEcCCCE----EEEEEEE
Confidence            47999999999999999999998875556666542  111 1247999999999999999999999966    7777777


Q ss_pred             EE
Q psy15235        303 RV  304 (323)
Q Consensus       303 ~v  304 (323)
                      .|
T Consensus        74 ~V   75 (75)
T cd05893          74 DV   75 (75)
T ss_pred             eC
Confidence            64

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.64  E-value=1.5e-15  Score=96.42  Aligned_cols=73  Identities=25%  Similarity=0.494  Sum_probs=61.3

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF  299 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~  299 (323)
                      |+.+.|.|.+.|.|.|.+.|++++..+.. ..++.+.       ....|.|.+++.+|.|.|+|.|.|..|.    ....
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~-~~r~~~~-------~~g~L~I~~v~~~D~G~Y~C~A~N~~G~----~~~~   68 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVN-NSRISIW-------DDGSLEILNITKLDEGSYTCFAENNRGK----ANST   68 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEeccc-CCCEEEc-------CCCEEEECcCChhHCEEEEEEEECCCCc----eeEE
Confidence            67899999999999999999999987653 3566654       3568999999999999999999999966    7777


Q ss_pred             EEEEE
Q psy15235        300 VYVRV  304 (323)
Q Consensus       300 ~~l~v  304 (323)
                      +.|.|
T Consensus        69 ~~l~~   73 (73)
T cd05852          69 GVLSV   73 (73)
T ss_pred             EEEEC
Confidence            76654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.63  E-value=6.2e-15  Score=100.04  Aligned_cols=91  Identities=23%  Similarity=0.531  Sum_probs=68.9

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeeec----cCCeeeeecCCCCCCcceeEEEeecCcCCCe
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYFR----SQGRIKLSEHPEKGTANSVLQIDEATMADRG  279 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  279 (323)
                      +|.+..+.+..+.+|+.+.|.|.+.|.|.|.+.|+++  +..+..    .+.++.+..  .  .....|+|.+++.+|+|
T Consensus         2 ~p~i~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~--~--~~~~~L~I~~v~~~D~G   77 (98)
T cd05870           2 QPHIIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG--Q--HGESSLHIKDVKLSDSG   77 (98)
T ss_pred             CCEEEeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee--c--CCeeEEEEeeCCcCCCE
Confidence            4556666678899999999999999999999999994  333321    123444431  1  12468999999999999


Q ss_pred             EEEEEEeecccCCCCCceeEEEEEE
Q psy15235        280 NYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       280 ~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      .|+|.|.|..|.    ...+++|.|
T Consensus        78 ~Y~C~A~N~~G~----~~~~~~l~~   98 (98)
T cd05870          78 RYDCEAASRIGG----HQKSMYLDI   98 (98)
T ss_pred             EEEEEEeccCCc----ceeEEEEeC
Confidence            999999999966    667777754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.63  E-value=3.4e-15  Score=101.25  Aligned_cols=91  Identities=26%  Similarity=0.548  Sum_probs=70.3

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc----CCeeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS----QGRIKLSEHPEKGTANSVLQIDEATMADRGNY  281 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y  281 (323)
                      +|.+....+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...    ..++.+.  .  ....+.|+|.+++.+|+|.|
T Consensus         2 ~P~i~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~L~I~~v~~~D~G~Y   77 (96)
T cd05732           2 QPKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR--G--HARVSSLTLKDVQLTDAGRY   77 (96)
T ss_pred             CccceecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe--C--CccEEEEEECcCCcCcCEEe
Confidence            46666556778899999999999999999999999988655422    1233332  1  11357899999999999999


Q ss_pred             EEEEeecccCCCCCceeEEEEEE
Q psy15235        282 YCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       282 ~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      +|.|.|..|.    ...+++|.|
T Consensus        78 ~C~a~N~~G~----~~~s~~l~v   96 (96)
T cd05732          78 DCEASNRIGG----DQQSMYLEV   96 (96)
T ss_pred             EEEEEeCCCC----cEEEEEEeC
Confidence            9999999966    777777764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.63  E-value=2.8e-15  Score=96.70  Aligned_cols=76  Identities=24%  Similarity=0.417  Sum_probs=60.0

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      ++|.|.+.|.|.|.+.|+++|..+.....++.+..      ....|.|.++..+|+|.|.|.|.|..|.  ......++|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~--~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS------KERTLTLRSAGPDDSGLYYCCAHNAFGS--VCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC------CCCEEEEeeCCcccCEEEEEEEEeCCCe--EeeCceEEE
Confidence            47999999999999999999998865544444431      2468999999999999999999999976  223556777


Q ss_pred             EEcc
Q psy15235        303 RVKG  306 (323)
Q Consensus       303 ~v~~  306 (323)
                      .|.+
T Consensus        73 ~v~d   76 (77)
T cd05760          73 SIID   76 (77)
T ss_pred             EEec
Confidence            7654

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.63  E-value=4.2e-15  Score=95.78  Aligned_cols=73  Identities=29%  Similarity=0.479  Sum_probs=60.8

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccC--CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCce
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ--GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE  297 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~  297 (323)
                      |+++.|.|.+.|.|.|.+.|+++|..+....  .++...        ...|.|.+++.+|+|.|+|.|.|..|.    ..
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~----~~   68 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS--------SGALILTDVQPSDTAVYQCEARNRHGN----LL   68 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee--------CCEEEECCCChhhCEEEEEEEECCCCe----EE
Confidence            6889999999999999999999998875432  233322        568999999999999999999999966    77


Q ss_pred             eEEEEEE
Q psy15235        298 AFVYVRV  304 (323)
Q Consensus       298 ~~~~l~v  304 (323)
                      ..++|.|
T Consensus        69 ~~~~l~V   75 (76)
T cd05867          69 ANAHVHV   75 (76)
T ss_pred             EEEEEEE
Confidence            7888776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.62  E-value=2.9e-15  Score=92.72  Aligned_cols=65  Identities=25%  Similarity=0.336  Sum_probs=53.7

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      ++|.|.+.|+|+|.+.|++||..+....             ..+.|.|.++..+|+|.|+|.|.|..|.    .+..+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~----~~~~~~~   63 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-------------SQHSLQIKDVTEASAGTYTLVLWNSAAG----LEKRISL   63 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC-------------CcCEEEECCCCHHHCEEEEEEEEECCcc----EEEEEEE
Confidence            4799999999999999999999885210             3578999999999999999999999965    5555555


Q ss_pred             EE
Q psy15235        303 RV  304 (323)
Q Consensus       303 ~v  304 (323)
                      .+
T Consensus        64 ~l   65 (67)
T cd05863          64 EL   65 (67)
T ss_pred             EE
Confidence            44

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.62  E-value=5.9e-15  Score=99.92  Aligned_cols=88  Identities=22%  Similarity=0.225  Sum_probs=67.6

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecC-CCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH-PEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      ...+..|+.+.|.|.+.|+|+|.+.|+++|.++............ .......++|+|.+++.+|+|.|+|.|.|..|. 
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~-   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV-   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce-
Confidence            456778999999999999999999999999998754332222110 001123578999999999999999999999965 


Q ss_pred             CCCceeEEEEEEc
Q psy15235        293 SQPNEAFVYVRVK  305 (323)
Q Consensus       293 ~~~~~~~~~l~v~  305 (323)
                         .+.++.|.|.
T Consensus        91 ---~~~t~~l~V~  100 (101)
T cd05859          91 ---KSYTFALQIQ  100 (101)
T ss_pred             ---EEEEEEEEEE
Confidence               7777777764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.62  E-value=6.1e-15  Score=98.84  Aligned_cols=86  Identities=26%  Similarity=0.362  Sum_probs=65.4

Q ss_pred             eceeEEeeCCeEEEEEEEecCCC-CcEEEEE-CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPP-PTVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      |....+..|+++.|.|.+.|.|. |.+.|++ ++..+.....++.+..  . ....++|+|.+++.+|+|.|+|.|.|..
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~--~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~   83 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVR--N-DDYSSTLTIYNANIDDAGIYKCVVSNED   83 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEe--C-CCCceEEEEeccChhhCEEEEEEEEcCC
Confidence            33456788999999999999985 6999998 6766654344554431  1 1125789999999999999999999997


Q ss_pred             -cCCCCCceeEEEEEE
Q psy15235        290 -TRNSQPNEAFVYVRV  304 (323)
Q Consensus       290 -g~~~~~~~~~~~l~v  304 (323)
                       |.    ..+++.|.|
T Consensus        84 ~g~----~~~s~~l~v   95 (96)
T cd05865          84 EGE----SEATVNVKI   95 (96)
T ss_pred             CCc----EEEEEEEEE
Confidence             44    777777765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.61  E-value=5.7e-15  Score=94.92  Aligned_cols=74  Identities=19%  Similarity=0.291  Sum_probs=59.8

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccCCe-eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR-IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA  298 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~  298 (323)
                      |+.+.|.|.+.|+|.|++.|+++|..+...... ....       ....|.|.+++.+|.|.|+|.|.|..|.    ..+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~-------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~----~~~   69 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV-------DGDTIIFSKVQERSSAVYQCNASNEYGY----LLA   69 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe-------cCCEEEECCCCHhhCEEEEEEEEcCCCE----EEE
Confidence            678999999999999999999999887532211 1111       2457999999999999999999999966    778


Q ss_pred             EEEEEE
Q psy15235        299 FVYVRV  304 (323)
Q Consensus       299 ~~~l~v  304 (323)
                      .++|.|
T Consensus        70 ~~~l~v   75 (76)
T cd05868          70 NAFVNV   75 (76)
T ss_pred             EEEEEe
Confidence            888776

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.61  E-value=1.3e-14  Score=98.28  Aligned_cols=91  Identities=26%  Similarity=0.503  Sum_probs=66.9

Q ss_pred             cceeeeeceeE-EeeCCeEEEEEEEecCCCCcEEEEECCeeeecc----CCeeeeecCCCCCCcceeEEEeecCcCCCeE
Q psy15235        206 KPTAKLVETLT-VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS----QGRIKLSEHPEKGTANSVLQIDEATMADRGN  280 (323)
Q Consensus       206 ~p~~~~~~~~~-~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  280 (323)
                      +|.|...++.. +..|+.+.|.|.+.|.|.|.+.|++++..+...    ..++.+..    ....+.|.|.+++.+|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~----~~~~~~L~I~~v~~~D~G~   77 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRS----HARVSSLTLKYIQYTDAGE   77 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEc----CccEEEEEEecCccCcCEE
Confidence            45555334333 445899999999999999999999988765422    12232221    1124789999999999999


Q ss_pred             EEEEEeecccCCCCCceeEEEEEE
Q psy15235        281 YYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       281 y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |+|.|.|..|.    ...+++|.|
T Consensus        78 Y~C~A~N~~G~----~~~~~~l~v   97 (97)
T cd05869          78 YLCTASNTIGQ----DSQSMYLEV   97 (97)
T ss_pred             EEEEEecCCCC----eeEEEEEEC
Confidence            99999999966    778888765

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.61  E-value=7e-15  Score=96.88  Aligned_cols=81  Identities=25%  Similarity=0.426  Sum_probs=67.0

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .|.+..+..|+.+.|.|.+.|.|.|.+.|++++..+.. ..++...        ...|.|.++..+|+|.|+|.|.|..|
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~-~~~~~~~--------~~~L~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS-ENRIEVE--------AGDLRITKLSLSDSGMYQCVAENKHG   75 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC-CCeEEEe--------CCEEEEeeCCHHHCEEEEEEEECCCC
Confidence            34566788999999999999999999999999998753 3444444        56899999999999999999999996


Q ss_pred             CCCCCceeEEEEEE
Q psy15235        291 RNSQPNEAFVYVRV  304 (323)
Q Consensus       291 ~~~~~~~~~~~l~v  304 (323)
                      .    ...++.|.|
T Consensus        76 ~----~~~~~~l~V   85 (85)
T cd05728          76 T----IYASAELAV   85 (85)
T ss_pred             e----EEEEEEEEC
Confidence            5    777777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.60  E-value=8.3e-15  Score=92.93  Aligned_cols=71  Identities=28%  Similarity=0.444  Sum_probs=58.3

Q ss_pred             eEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        222 KLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       222 ~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                      ++.|.|.+.|.|.|.+.|++++..+... .++.+.       ....|.|.++..+|+|.|+|.|.|..|.    ...++.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~-~~~~~~-------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~----~~~~~~   68 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPS-DYFKIV-------KEHNLQVLGLVKSDEGFYQCIAENDVGN----VQASAQ   68 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCC-CCEEEE-------ecCCEEEEcCCcccCEEEEEEEEcCCCE----EEEEEE
Confidence            4789999999999999999999887543 344444       2456889999999999999999999966    777777


Q ss_pred             EEE
Q psy15235        302 VRV  304 (323)
Q Consensus       302 l~v  304 (323)
                      |.|
T Consensus        69 L~V   71 (71)
T cd05723          69 LII   71 (71)
T ss_pred             EEC
Confidence            764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.60  E-value=1.4e-14  Score=98.23  Aligned_cols=93  Identities=26%  Similarity=0.480  Sum_probs=70.7

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCcCC-CeEEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATMAD-RGNYY  282 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d-~G~y~  282 (323)
                      +|.+..+....+.+|+.+.|.|.+.|.|.| .+.|++++..+... ..++.+..........++|+|.++..+| .|.|+
T Consensus         2 pp~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~   81 (98)
T cd05758           2 PPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYN   81 (98)
T ss_pred             CCeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEE
Confidence            456655556678899999999999999999 59999999887643 3566555322222235789999999955 89999


Q ss_pred             EEEeecccCCCCCceeEEEE
Q psy15235        283 CHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       283 C~a~n~~g~~~~~~~~~~~l  302 (323)
                      |.|.|..|.    ....+.|
T Consensus        82 C~A~N~~G~----~~~~~~L   97 (98)
T cd05758          82 CTAWNSFGS----GTAIISL   97 (98)
T ss_pred             EEEEcCCCc----ccEEEEe
Confidence            999999976    6666665

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.60  E-value=1.1e-14  Score=93.22  Aligned_cols=75  Identities=29%  Similarity=0.445  Sum_probs=59.3

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      +.|.|.+.|.|.|.+.|++++..+.....++.+..  .. ....+|.|.+++.+|+|.|+|.|.|..|.    ....+.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~--~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~----~~~~~~l   73 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ--DN-CGRICLLIQNANKEDAGWYTVSAVNEAGV----VSCNARL   73 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE--cC-CCeEEEEECCCCcccCEEEEEEEEcCCCc----EEEEEEE
Confidence            47999999999999999999988865445555431  11 12347999999999999999999999966    7777776


Q ss_pred             EE
Q psy15235        303 RV  304 (323)
Q Consensus       303 ~v  304 (323)
                      .|
T Consensus        74 ~v   75 (75)
T cd05744          74 DV   75 (75)
T ss_pred             eC
Confidence            54

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.60  E-value=2e-14  Score=95.91  Aligned_cols=84  Identities=25%  Similarity=0.363  Sum_probs=65.5

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+...... ...    .......|.|.++..+|.|.|+|.|.|..|.
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~-~~~----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~   81 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTD-TLE----TTVDIYNLQLSNITSETQTTVTCTAENPVGQ   81 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccE-EEE----ecCCEEEEEEecCCcccCEEEEEEEECCCCc
Confidence            33455889999999999999999999999999877543221 111    1113578999999999999999999999965


Q ss_pred             CCCCceeEEEEEE
Q psy15235        292 NSQPNEAFVYVRV  304 (323)
Q Consensus       292 ~~~~~~~~~~l~v  304 (323)
                          ....+.|.|
T Consensus        82 ----~~~~~~L~v   90 (90)
T cd04972          82 ----ANVSVQVTV   90 (90)
T ss_pred             ----eeEEEEEeC
Confidence                777777654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.59  E-value=6.2e-15  Score=93.51  Aligned_cols=71  Identities=31%  Similarity=0.549  Sum_probs=57.0

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      +.|.|.+.|+|.|.+.|++++..+...... ...       ...+|.|.++..+|+|.|+|.|.|..|.    ....+.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~-~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l   68 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTK-KLN-------NNKTLQLDNVLESDDGEYVCTAENSEGS----ARHHYTV   68 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCcee-EEc-------CCCEEEEcccCHHhCEEEEEEEEcCCCe----EEEEEEE
Confidence            468999999999999999998876432211 111       3678999999999999999999999966    7788887


Q ss_pred             EEc
Q psy15235        303 RVK  305 (323)
Q Consensus       303 ~v~  305 (323)
                      .|.
T Consensus        69 ~Ve   71 (71)
T cd05876          69 TVE   71 (71)
T ss_pred             EEC
Confidence            763

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.59  E-value=1.3e-14  Score=96.40  Aligned_cols=79  Identities=20%  Similarity=0.360  Sum_probs=63.5

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS  293 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~  293 (323)
                      +..+.+|++++|.|.+.|. .|.+.|++++..+..  .+..+..      ...+|+|.+++.+|.|.|+|.|.|..|.  
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~--~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~--   80 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP--PRLQLSN------DNRTLTFNNVTRSDTGHYQCEASNEVSN--   80 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC--CCEEEeC------CCCEEEECcCChhhCEEEEEEEEcCCCC--
Confidence            4578899999999999999 999999999988753  2333331      2468999999999999999999999975  


Q ss_pred             CCceeEEEEEE
Q psy15235        294 QPNEAFVYVRV  304 (323)
Q Consensus       294 ~~~~~~~~l~v  304 (323)
                       ..+..+.|.|
T Consensus        81 -~~S~~~~L~V   90 (91)
T cd05740          81 -MTSDPYILNV   90 (91)
T ss_pred             -EEeeeEEEEe
Confidence             2445666666

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.59  E-value=2.3e-14  Score=95.74  Aligned_cols=86  Identities=29%  Similarity=0.425  Sum_probs=67.1

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .|....+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.... . .+ ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~-~~~~~~~-~-~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS-EHYSVKL-E-QG-KYASLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC-CCEEEEE-c-CC-CEEEEEECCCChhhCEEEEEEEEeCCC
Confidence            345667889999999999999999999999999887543 3333321 1 11 135799999999999999999999996


Q ss_pred             CCCCCceeEEEEEE
Q psy15235        291 RNSQPNEAFVYVRV  304 (323)
Q Consensus       291 ~~~~~~~~~~~l~v  304 (323)
                      .    ....+.|+|
T Consensus        83 ~----~~~~~~v~~   92 (92)
T cd05891          83 G----ETVDVTVSV   92 (92)
T ss_pred             c----eeeEEEEEC
Confidence            6    777777764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.59  E-value=1.3e-14  Score=93.74  Aligned_cols=75  Identities=27%  Similarity=0.425  Sum_probs=60.8

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF  299 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~  299 (323)
                      |+.+.|.|.+.|+|.|.+.|++++..+..........      .....|.|.+++.+|+|.|+|.|.|..|.    ..+.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~----~~~~   70 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRR------VDGGTLILSNVQPNDTAVYQCNASNVHGY----LLAN   70 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEE------ccCCEEEECCCChhhCEEEEEEEEccCCe----EEEe
Confidence            6889999999999999999999998876433221111      13578999999999999999999999966    7777


Q ss_pred             EEEEE
Q psy15235        300 VYVRV  304 (323)
Q Consensus       300 ~~l~v  304 (323)
                      +.|.|
T Consensus        71 ~~l~V   75 (76)
T cd04978          71 AFVHV   75 (76)
T ss_pred             EEEEE
Confidence            77776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.59  E-value=2.2e-14  Score=95.37  Aligned_cols=81  Identities=25%  Similarity=0.568  Sum_probs=65.4

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+... .....        ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         7 ~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968           7 FPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS-AEISM--------SGAVLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             CCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc-cEEEE--------eCCEEEECCCCcccCEEEEEEEEECCC
Confidence            445667889999999999999999999999988765432 22221        357899999999999999999999997


Q ss_pred             CCCCCceeEEEEEE
Q psy15235        291 RNSQPNEAFVYVRV  304 (323)
Q Consensus       291 ~~~~~~~~~~~l~v  304 (323)
                      .    ......|.|
T Consensus        78 ~----~~~~~~l~V   87 (88)
T cd04968          78 K----DTHQGRIYV   87 (88)
T ss_pred             c----EEEEEEEEE
Confidence            6    677777766

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.59  E-value=1.3e-14  Score=92.77  Aligned_cols=73  Identities=26%  Similarity=0.499  Sum_probs=60.9

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF  299 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~  299 (323)
                      |+.+.|.|.+.|.|.|.+.|++++..+.. ..++.+.       ....|.|.+++.+|+|.|+|.|.|..|.    ...+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~----~~~~   68 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTN-SSRICIW-------PDGSLEILNVTKSDEGKYTCFAENFFGK----ANST   68 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEccc-CCCEEEC-------CCCeEEEccCChhHCEEEEEEEECCCCc----eEEE
Confidence            67899999999999999999999988753 3445444       2467999999999999999999999966    7777


Q ss_pred             EEEEE
Q psy15235        300 VYVRV  304 (323)
Q Consensus       300 ~~l~v  304 (323)
                      +.|.|
T Consensus        69 ~~l~V   73 (73)
T cd04969          69 GSLSV   73 (73)
T ss_pred             EEEEC
Confidence            77764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.58  E-value=1.8e-14  Score=96.18  Aligned_cols=80  Identities=25%  Similarity=0.458  Sum_probs=64.5

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeee-------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYF-------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      |+.+.|.|.+.|+|.|.+.|++++..+.       ....++.+.       ....|+|.+++.+|+|.|+|.|.|..|. 
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-   72 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS-------QTGDLTITNVQRSDVGYYICQTLNVAGS-   72 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC-------CCCeEEEeeCChhhCEEEEEEEEcCCCc-
Confidence            6889999999999999999999886531       123344443       2467999999999999999999999966 


Q ss_pred             CCCceeEEEEEEcceecC
Q psy15235        293 SQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       293 ~~~~~~~~~l~v~~~~~~  310 (323)
                         ....+.|.|.+....
T Consensus        73 ---~~~~~~l~V~~~~~~   87 (90)
T cd05726          73 ---ILTKAYLEVTDVIAD   87 (90)
T ss_pred             ---eEEEEEEEEeecccC
Confidence               888899999876543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.58  E-value=4.5e-14  Score=94.55  Aligned_cols=85  Identities=34%  Similarity=0.545  Sum_probs=70.3

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+.. ..++.+....    ...+|.|.++..+|.|.|+|.|.|..|
T Consensus         6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~-~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS-SQRYQIESDG----GSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES-SSSEEEEEET----TEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee-eeeeeeeccc----ceeEEccCCCChhhCEEEEEEEEECCC
Confidence            44567889999999999999999999999999998875 3444443211    578999999999999999999999996


Q ss_pred             CCCCCceeEEEEEE
Q psy15235        291 RNSQPNEAFVYVRV  304 (323)
Q Consensus       291 ~~~~~~~~~~~l~v  304 (323)
                      .    ....+.|.|
T Consensus        81 ~----~~~~~~l~V   90 (90)
T PF07679_consen   81 E----ATASVNLTV   90 (90)
T ss_dssp             E----EEEEEEEEE
T ss_pred             E----EEEEEEEEC
Confidence            6    777777765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.58  E-value=1.7e-14  Score=92.15  Aligned_cols=73  Identities=23%  Similarity=0.279  Sum_probs=54.6

Q ss_pred             EEEEEecCCCCcEEEEECCeeeeccCCee-eeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        225 LECLVVGSPPPTVEWRIGNDTYFRSQGRI-KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       225 l~C~~~g~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      |.|.+.|+|.|+++|++||..+..+.... .+.. .......+.|.|.++..+|+|.|+|.|.|..|.    ...++.+
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~----~~~~~~~   76 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHV-INNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE----DEKNVSA   76 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEe-ecccceEEEEEECCCCcccCEEEEEEEEcCCcc----cceEEEe
Confidence            67999999999999999999987443211 1110 111123578999999999999999999999976    6666554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.58  E-value=1.3e-14  Score=94.05  Aligned_cols=81  Identities=16%  Similarity=0.223  Sum_probs=62.7

Q ss_pred             CeEEEEEEEecC--CCCcEEEEECCeeeec--cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235        221 EKLRLECLVVGS--PPPTVEWRIGNDTYFR--SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN  296 (323)
Q Consensus       221 ~~~~l~C~~~g~--p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~  296 (323)
                      +++.|.|.+.+.  +++.+.|++||..+..  ...++....   +....+.|+|.+++.+|+|+|+|.|.|..+.    .
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~---~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~----~   73 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVG---GQDSAGDLMIRSIQLKHAGKYVCMVQTSVDK----L   73 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEec---cCCCCCcEEEecCCHHHCEEEEEEEEcccCc----e
Confidence            468999999764  5778999999999862  333443320   0012568999999999999999999999955    8


Q ss_pred             eeEEEEEEccee
Q psy15235        297 EAFVYVRVKGKS  308 (323)
Q Consensus       297 ~~~~~l~v~~~~  308 (323)
                      .++..|.|.++|
T Consensus        74 ~a~a~L~V~~pP   85 (85)
T cd05853          74 SAAADLIVRGPP   85 (85)
T ss_pred             EEEEEEEEecCC
Confidence            888899888776

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.58  E-value=7.3e-15  Score=92.13  Aligned_cols=68  Identities=24%  Similarity=0.340  Sum_probs=53.6

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      +.|.|.+.|+|.|.+.|++||..+... .++  .       ....|.|.++..+|+|.|+|.|.|..|.  ......+.|
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~-~~~--~-------~~~~L~I~~v~~~D~G~YtC~a~N~~G~--~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-HTF--K-------RGVHLTIYEVTEKDAGNYTVVLTNPITK--EEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC-CEE--c-------cCCEEEECcCCHHHCEEEEEEEEECCCc--eeeEEEEEE
Confidence            468999999999999999999988533 221  2       2467999999999999999999999976  234444444

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.58  E-value=3e-14  Score=91.39  Aligned_cols=74  Identities=30%  Similarity=0.492  Sum_probs=59.7

Q ss_pred             eEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        222 KLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       222 ~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                      ++.|.|.+.|.|.|.+.|+++|..+.. ..++.+..  .  .....|.|.++..+|+|.|+|.|.|..|.    .+..+.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~-~~~~~~~~--~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~----~~~~~~   71 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKL-SGRVQIET--T--ASSTSLVIKNAERSDSGKYTLTLKNPAGE----KSATIN   71 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCC-CCeEEEEE--C--CCeEEEEECCCCcCcCEEEEEEEECCCcc----EEEEEE
Confidence            378999999999999999999998743 34444431  1  13688999999999999999999999966    777777


Q ss_pred             EEE
Q psy15235        302 VRV  304 (323)
Q Consensus       302 l~v  304 (323)
                      |.|
T Consensus        72 l~V   74 (74)
T cd05748          72 VKV   74 (74)
T ss_pred             EEC
Confidence            764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.57  E-value=1.1e-14  Score=91.44  Aligned_cols=71  Identities=20%  Similarity=0.134  Sum_probs=55.0

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      +.|.|.+.|.|+|++.|++++..+.....++...        ..+|.|.+++.+|+|.|+|.|.|..+.  ......++|
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~--------~~~L~I~~v~~~D~G~YtC~a~~~~~~--~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVD--------GYSLVIKDVTEEDAGIYTILLGIKQYN--LFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeC--------CCEEEECcCCHHHCEEEEEEEEccccc--eEeeEEEEE
Confidence            4689999999999999999998876543444332        457999999999999999999998654  234444444


Q ss_pred             E
Q psy15235        303 R  303 (323)
Q Consensus       303 ~  303 (323)
                      .
T Consensus        71 ~   71 (72)
T cd07702          71 I   71 (72)
T ss_pred             E
Confidence            3

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.57  E-value=1.6e-14  Score=91.48  Aligned_cols=69  Identities=26%  Similarity=0.383  Sum_probs=55.6

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      +.|.|.+.|.|+|.+.|+++|..+... .+...        ...+|.|.++..+|+|.|+|.|.|..|.    ....+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~-~~~~~--------~~~~L~I~~v~~~D~G~YtC~a~N~~g~----~~~~~~~   67 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK-NRTKK--------SGHSLTIKDVTEEDAGNYTVVLTNKQAK----LEKRLTF   67 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC-CEEEc--------CCCEEEECcCCHHHCEEEEEEEEcCCcc----EEEEEEE
Confidence            468999999999999999999988644 33332        2578999999999999999999999965    5555555


Q ss_pred             EE
Q psy15235        303 RV  304 (323)
Q Consensus       303 ~v  304 (323)
                      .+
T Consensus        68 ~~   69 (71)
T cd04976          68 TL   69 (71)
T ss_pred             EE
Confidence            44

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.57  E-value=3.3e-14  Score=93.34  Aligned_cols=81  Identities=23%  Similarity=0.369  Sum_probs=62.2

Q ss_pred             CeEEEEEEEecCCCC--cEEEEECCeeeecc--CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235        221 EKLRLECLVVGSPPP--TVEWRIGNDTYFRS--QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN  296 (323)
Q Consensus       221 ~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~  296 (323)
                      +.+.|.|.+.|+|.|  .+.|++++..+...  ..++.... .  ....+.|+|.+++.+|+|.|+|.|.|..|.    .
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~-~--~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~----~   73 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME-V--KETIGDLVIVNAQLSHAGTYTCTAQTVVDS----A   73 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE-e--cceEeEEEEccCChhhCeEEEEEEecCCCC----E
Confidence            468999999999887  58999999887542  22221110 0  012478999999999999999999999965    8


Q ss_pred             eeEEEEEEccee
Q psy15235        297 EAFVYVRVKGKS  308 (323)
Q Consensus       297 ~~~~~l~v~~~~  308 (323)
                      .+++.|.|.++|
T Consensus        74 ~~~~~L~V~~~P   85 (85)
T cd05854          74 SASATLVVRGPP   85 (85)
T ss_pred             EEEEEEEEECCC
Confidence            889999998765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.57  E-value=3.7e-14  Score=94.05  Aligned_cols=72  Identities=32%  Similarity=0.539  Sum_probs=61.2

Q ss_pred             ceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        213 ETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ....+.+|+++.|.|.+ .|.|.|.+.|++++..+.....++.+.       ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   76 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV-------DDGNLLIAEARKSDEGTYKCVATNMVGE   76 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc-------cCCEEEEeECCcccCEEEEEEEEeccCc
Confidence            45677899999999998 789999999999998876555555544       2568999999999999999999999976

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.56  E-value=6.8e-14  Score=93.77  Aligned_cols=83  Identities=31%  Similarity=0.482  Sum_probs=66.3

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.+..+.+|+.+.|.|.+.|+|.|.+.|+++|..+.. ..++.+..  .  ...+.|.|.++..+|+|.|+|.|.|..|
T Consensus         9 ~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~-~~~~~~~~--~--~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   83 (92)
T cd05747           9 KPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS-SQRHQITS--T--EYKSTFEISKVQMSDEGNYTVVVENSEG   83 (92)
T ss_pred             cCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC-CCcEEEEE--c--CCeeEEEECCCCcccCEeEEEEEEcCCC
Confidence            45567889999999999999999999999999987753 33444431  1  1357899999999999999999999996


Q ss_pred             CCCCCceeEEEE
Q psy15235        291 RNSQPNEAFVYV  302 (323)
Q Consensus       291 ~~~~~~~~~~~l  302 (323)
                      .    ....+.|
T Consensus        84 ~----~~~~~~l   91 (92)
T cd05747          84 K----QEAQFTL   91 (92)
T ss_pred             C----EeEEEEe
Confidence            6    6666554

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.56  E-value=4.4e-14  Score=90.67  Aligned_cols=73  Identities=26%  Similarity=0.472  Sum_probs=58.2

Q ss_pred             CCeEEEEEEEecCCCCcEEEEEC-CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIG-NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA  298 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~  298 (323)
                      |+.+.|.|.+.|.|.|.+.|+++ +..+. ...+....       ...+|.|.++..+|+|.|+|.|.|..|.    .+.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~-~~~~~~~~-------~~~~L~i~~~~~~D~G~Y~C~a~N~~G~----~~~   68 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLIS-NSSRTLVY-------DNGTLDILITTVKDTGSFTCIASNAAGE----ATA   68 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEec-CCCeEEEe-------cCCEEEEEECChhhCEEEEEEEECCCCe----EEE
Confidence            68899999999999999999984 54443 33444433       3568999999999999999999999966    777


Q ss_pred             EEEEEE
Q psy15235        299 FVYVRV  304 (323)
Q Consensus       299 ~~~l~v  304 (323)
                      .+.|.|
T Consensus        69 ~~~l~v   74 (74)
T cd05764          69 TVELHI   74 (74)
T ss_pred             EEEEEC
Confidence            777764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.56  E-value=5.5e-14  Score=92.94  Aligned_cols=80  Identities=20%  Similarity=0.378  Sum_probs=63.5

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCe--eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR--IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++..+......  +...      .....|.|.++..+|+|.|+|.|.|..|. 
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~------~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-   76 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR------NQHWSLIMESVVPSDKGNYTCVVENEYGS-   76 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe------CCceEEEEccCCcccCEEEEEEEEeCCCE-
Confidence            34678999999999999999999999999887643221  1111      02567999999999999999999999965 


Q ss_pred             CCCceeEEEEEE
Q psy15235        293 SQPNEAFVYVRV  304 (323)
Q Consensus       293 ~~~~~~~~~l~v  304 (323)
                         ....+.|.|
T Consensus        77 ---~~~~~~l~v   85 (85)
T cd05857          77 ---INHTYHLDV   85 (85)
T ss_pred             ---EEEEEEEEC
Confidence               777777764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.55  E-value=7.3e-14  Score=92.65  Aligned_cols=84  Identities=24%  Similarity=0.483  Sum_probs=63.8

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC-CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG-NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      +.+..+..|+++.|.|.+.|.|. .+.|+++ +..+. ...++.+..  .+  ....|+|.++..+|+|.|+|.|.|..|
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~-~~~r~~~~~--~g--~~~~L~I~~v~~~D~G~Y~C~A~N~~G   80 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV-SSQRVVVQK--EG--VRSRLTIYNANIEDAGIYRCQATDAKG   80 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec-CCCCEEEEe--CC--CeeEEEEecCChHHCEEEEEEEEcCCC
Confidence            34567889999999999999987 8999985 55553 345555441  11  245899999999999999999999997


Q ss_pred             CCCCCceeEEEEEE
Q psy15235        291 RNSQPNEAFVYVRV  304 (323)
Q Consensus       291 ~~~~~~~~~~~l~v  304 (323)
                      .   ....++.|.+
T Consensus        81 ~---~~~~~i~l~~   91 (92)
T cd05866          81 Q---TQEATVVLEI   91 (92)
T ss_pred             c---EEEEEEEEEE
Confidence            6   2466666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.55  E-value=4.1e-14  Score=93.33  Aligned_cols=81  Identities=21%  Similarity=0.334  Sum_probs=61.8

Q ss_pred             CeEEEEEEEecCCCC--cEEEEECCeeeeccCC--eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235        221 EKLRLECLVVGSPPP--TVEWRIGNDTYFRSQG--RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN  296 (323)
Q Consensus       221 ~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~  296 (323)
                      +++.|.|.+.|.|.|  .+.|+++|..+.....  ++....   .....+.|.|.+++.+|+|.|+|.|.|..|.    .
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~----~   73 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG---GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS----L   73 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe---cccccceEEEccCCHHhCeeeEEEEecCCCc----E
Confidence            468999999999877  5799999988753322  111110   0013578999999999999999999999965    8


Q ss_pred             eeEEEEEEccee
Q psy15235        297 EAFVYVRVKGKS  308 (323)
Q Consensus       297 ~~~~~l~v~~~~  308 (323)
                      ...+.|.|.++|
T Consensus        74 ~~~~~l~V~~pP   85 (85)
T cd04970          74 SASADLIVRGPP   85 (85)
T ss_pred             EEEEEEEEECCC
Confidence            888999998865

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.55  E-value=2.6e-14  Score=91.02  Aligned_cols=70  Identities=30%  Similarity=0.520  Sum_probs=56.2

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      +.|.|.+.|.|.|.+.|++++..+...  +.....      ....|.|.+++.+|+|.|+|.|.|..|.    ....+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l   68 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD--RTKFEN------FNKTLKIDNVSEEDDGEYRCTASNSLGS----ARHTISV   68 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC--ceeEec------CCCEEEECCCCHHHCEEEEEEEEeCCce----EEEEEEE
Confidence            478999999999999999998876432  221110      3568999999999999999999999965    7788887


Q ss_pred             EE
Q psy15235        303 RV  304 (323)
Q Consensus       303 ~v  304 (323)
                      .|
T Consensus        69 ~V   70 (71)
T cd05731          69 TV   70 (71)
T ss_pred             EE
Confidence            76

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.54  E-value=1.1e-13  Score=93.40  Aligned_cols=88  Identities=23%  Similarity=0.317  Sum_probs=70.8

Q ss_pred             eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEE
Q psy15235        110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      +...+....+..|+.+.|.|.+.|.+   .+++.|+|+|..+..    +.++.    .....|.|.++..+|+|.|+|.+
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~~~G~p---~p~v~W~kdg~~l~~----~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a   75 (98)
T cd05762           3 IIQFPEDMKVRAGESVELFCKVTGTQ---PITCTWMKFRKQIQE----GEGIKIENTENSSKLTITEGQQEHCGCYTLEV   75 (98)
T ss_pred             eEECCcCEEEECCCEEEEEEEEcccC---CCceEEEECCEEecC----CCcEEEEecCCeeEEEECCCChhhCEEEEEEE
Confidence            33456667788999999999999988   789999999999875    44443    34678999999999999999999


Q ss_pred             EcCCCCCCCCceeeeeEEEecc
Q psy15235        186 IDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       186 ~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                       .|..+  .....+.|.|..+|
T Consensus        76 -~N~~G--~~~~~~~l~V~~~P   94 (98)
T cd05762          76 -ENKLG--SRQAQVNLTVVDKP   94 (98)
T ss_pred             -EcCCC--ceeEEEEEEEecCC
Confidence             78844  46667778877765

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.54  E-value=3.6e-14  Score=89.48  Aligned_cols=68  Identities=25%  Similarity=0.530  Sum_probs=55.7

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+.       ....|.|.++..+|+|.|+|.|.|..|.    ...++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~-~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~----~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTES-GKFHIS-------PEGYLAIRDVGVADQGRYECVARNTIGY----ASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCC-CCEEEC-------CCCEEEECcCChhhCEEEEEEEECCCCc----EEEEEEe
Confidence            479999999999999999999877533 444444       3578999999999999999999999966    6665554

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.54  E-value=4e-14  Score=89.41  Aligned_cols=69  Identities=32%  Similarity=0.599  Sum_probs=56.1

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      +.|.|.+.|.|+|.+.|++++..+..  .++...       ....|.|.+++.+|+|.|+|.|.|..|.    ....+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~--~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l   67 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK--GRAEIL-------DDKSLKIRNVTAGDEGSYTCEAENMVGK----IEASASL   67 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC--CcEEEe-------eCCEEEECcCChhHCEEEEEEEEcCCCc----EEEEEEE
Confidence            47999999999999999999876642  334433       3568999999999999999999999966    7777776


Q ss_pred             EE
Q psy15235        303 RV  304 (323)
Q Consensus       303 ~v  304 (323)
                      .|
T Consensus        68 ~V   69 (69)
T cd05725          68 TV   69 (69)
T ss_pred             EC
Confidence            54

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.54  E-value=5.5e-14  Score=92.37  Aligned_cols=78  Identities=26%  Similarity=0.412  Sum_probs=61.5

Q ss_pred             EEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235        216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP  295 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~  295 (323)
                      ....|+.+.|.|.+.|.|.|.+.|++++..+........ .      .....|.|.+++.+|+|.|+|.|.|..|.    
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~----   73 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-R------KKKWTLSLKNLKPEDSGKYTCHVSNRAGE----   73 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-c------CceEEEEEccCChhhCEEEEEEEEcCCcc----
Confidence            355799999999999999999999999987653322111 1      13578999999999999999999999965    


Q ss_pred             ceeEEEEEE
Q psy15235        296 NEAFVYVRV  304 (323)
Q Consensus       296 ~~~~~~l~v  304 (323)
                      ....+.|.|
T Consensus        74 ~~~~~~v~v   82 (82)
T cd05856          74 INATYKVDV   82 (82)
T ss_pred             EEEEEEEeC
Confidence            777777654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.53  E-value=9e-14  Score=90.12  Aligned_cols=77  Identities=19%  Similarity=0.402  Sum_probs=61.6

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS  293 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~  293 (323)
                      ...+.+|+.+.|.|.+.+. .+.+.|+++|..+... .++.+.        ...|.|.+++.+|+|.|+|.|.|..|.  
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~-~~~~~~--------~~~L~I~~~~~~DsG~Y~C~a~n~~g~--   70 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN-NRTRIT--------GEEVQIKDAVPRDSGLYACVTSSPSGS--   70 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC-ceEEEe--------CCEEEECCCChhhCEEEEEEEeCCCCc--
Confidence            4567899999999999886 5689999999887543 444444        457999999999999999999999855  


Q ss_pred             CCceeEEEEEE
Q psy15235        294 QPNEAFVYVRV  304 (323)
Q Consensus       294 ~~~~~~~~l~v  304 (323)
                        ....+.|.|
T Consensus        71 --~~~~~~v~V   79 (79)
T cd04973          71 --DTTYFSVNV   79 (79)
T ss_pred             --ccEEEEEeC
Confidence              666666554

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.53  E-value=2.4e-13  Score=90.63  Aligned_cols=93  Identities=19%  Similarity=0.392  Sum_probs=74.4

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCcCC-CeEEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATMAD-RGNYY  282 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d-~G~y~  282 (323)
                      +|.|.......+.+|+.+.|.|.+.+.|+| .+.|.+++..+... ..++.+.+........++|+|.++..+| .|.|.
T Consensus         2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~   81 (98)
T cd05898           2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYN   81 (98)
T ss_pred             CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEE
Confidence            566766667788999999999999888887 58999988877543 5777777544445568999999998877 68999


Q ss_pred             EEEeecccCCCCCceeEEEE
Q psy15235        283 CHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       283 C~a~n~~g~~~~~~~~~~~l  302 (323)
                      |.|.|..|.    ....+.|
T Consensus        82 C~a~N~~G~----d~~~i~L   97 (98)
T cd05898          82 CTAWNSFGS----GTAIIQL   97 (98)
T ss_pred             EEEEeCCcc----ceEEEEe
Confidence            999999966    6666665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.53  E-value=7.3e-14  Score=89.35  Aligned_cols=72  Identities=29%  Similarity=0.440  Sum_probs=56.0

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeec-cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFR-SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                      ++|.|.+.|+|.|.+.|++++..+.. ...++...       ....|.|.+++.+|+|.|+|.|.|..|..   ....+.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~-------~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~---~s~~a~   70 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL-------RSGALQIENSEESDQGKYECVATNSAGTR---YSAPAN   70 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc-------CCcEEEECCCChhhCEEEEEEEECCCCce---EcccEE
Confidence            47999999999999999999987753 23444443       25679999999999999999999999761   344555


Q ss_pred             EEE
Q psy15235        302 VRV  304 (323)
Q Consensus       302 l~v  304 (323)
                      |.|
T Consensus        71 l~v   73 (74)
T cd05738          71 LYV   73 (74)
T ss_pred             EEE
Confidence            544

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.52  E-value=1.5e-13  Score=89.09  Aligned_cols=76  Identities=20%  Similarity=0.256  Sum_probs=55.4

Q ss_pred             EEEEEEecCCCCcEEEEECCeeeeccCCee-eeecCC-CCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        224 RLECLVVGSPPPTVEWRIGNDTYFRSQGRI-KLSEHP-EKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       224 ~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                      .|.|.+.|+|.|.++|++||..+....... ...... ......+.|+|.++..+|+|.|+|.|.|..|.    ..+.+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~----~~~~~~   77 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ----DSKSIS   77 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC----eeeEEE
Confidence            368999999999999999999887543211 111000 01123568999999999999999999999976    666655


Q ss_pred             EE
Q psy15235        302 VR  303 (323)
Q Consensus       302 l~  303 (323)
                      |.
T Consensus        78 ~~   79 (81)
T cd04971          78 AH   79 (81)
T ss_pred             ee
Confidence            53

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.52  E-value=1e-13  Score=89.75  Aligned_cols=67  Identities=27%  Similarity=0.600  Sum_probs=54.9

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      |+++.|.|.+.|.|.|.+.|++++..+... .++.+..  ..  ....|+|.++..+|.|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   67 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDS-ARVSITS--EG--GYGTLTIRDVKESDQGAYTCEAINTRGM   67 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCC-CCEEEEE--CC--CEEEEEECCCChHHCEEEEEEEEecCCE
Confidence            688999999999999999999998877533 3444331  11  2578999999999999999999999976

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.52  E-value=4.4e-13  Score=97.23  Aligned_cols=120  Identities=23%  Similarity=0.345  Sum_probs=81.4

Q ss_pred             EEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeece-eEEeeCCeEEEEEEEecC-CC-CcEEEEECC
Q psy15235        167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVET-LTVIEGEKLRLECLVVGS-PP-PTVEWRIGN  243 (323)
Q Consensus       167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~  243 (323)
                      +|+|.+++.+|+|.|.|.+ .+.  .........|.|..+|.+.+... .....|+.+.|.|.+.|. |. +.+.|++++
T Consensus         2 sL~i~~v~~~D~G~Y~C~~-~~~--~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g   78 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSV-STP--PHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREP   78 (139)
T ss_pred             eEEECCCCHHHCEEEEEEE-Ecc--CcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence            6899999999999999999 554  23456777888888887774433 333478899999999886 54 489999998


Q ss_pred             eeeec-----cCCee-eeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        244 DTYFR-----SQGRI-KLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       244 ~~~~~-----~~~~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .....     .+... ......++. ...+.|.+..-..++.+.|+|.+.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          79 PGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            54211     11100 011001111 234678877666666779999999976

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.51  E-value=1.9e-13  Score=85.77  Aligned_cols=68  Identities=26%  Similarity=0.526  Sum_probs=53.1

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF  299 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~  299 (323)
                      |+.+.|.|.+.|+|.|.+.|++++..+... .+...        ....|.|.++.  |+|.|+|.|.|..|.    ...+
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~-~~~~~--------~~~~L~i~~~~--d~G~Y~C~A~N~~G~----~~~~   65 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE-DEMPV--------GRNVLELTNIY--ESANYTCVAISSLGM----IEAT   65 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCc-cceec--------CccEEEEeccc--cCeeEEEEEEeCCCE----EEEE
Confidence            678999999999999999999999876432 22222        24579999874  799999999999966    5555


Q ss_pred             EEE
Q psy15235        300 VYV  302 (323)
Q Consensus       300 ~~l  302 (323)
                      +.|
T Consensus        66 a~l   68 (69)
T cd05739          66 AQV   68 (69)
T ss_pred             EEE
Confidence            554

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.51  E-value=2e-13  Score=91.17  Aligned_cols=64  Identities=23%  Similarity=0.429  Sum_probs=53.8

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccC
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATR  291 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~  291 (323)
                      +..+.|.|.+.|+|.|.++|++++..+.....++.+.        ++.|.|.++. .+|+|.|+|.|.|..|.
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~   83 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--------GGNLVINNPDKYKDAGRYVCIVSNIYGK   83 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--------CCEEEECcCCcCCCCEEEEEEEEeCcce
Confidence            4579999999999999999999998875444555444        5789999885 68999999999999976

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.51  E-value=1.2e-13  Score=88.76  Aligned_cols=72  Identities=31%  Similarity=0.588  Sum_probs=55.5

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeee--ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYF--RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV  300 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~  300 (323)
                      ++|.|.+.|.|.|.++|++++....  ....++...  .    ....|.|.+++.+|+|.|+|.|.|..|.    ....+
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~--~----~~~~L~I~~~~~~D~G~Y~C~A~N~~G~----~~~~~   70 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM--P----EDDVFFIVDVKIEDTGVYSCTAQNTAGS----ISANA   70 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEe--c----CCCEEEEeeCCcccCEEEEEEEEcCCCE----EEeeE
Confidence            4789999999999999999986422  122333332  1    2468999999999999999999999966    77777


Q ss_pred             EEEE
Q psy15235        301 YVRV  304 (323)
Q Consensus       301 ~l~v  304 (323)
                      .|.|
T Consensus        71 ~l~V   74 (75)
T cd05763          71 TLTV   74 (75)
T ss_pred             EEEE
Confidence            7766

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.50  E-value=2.2e-13  Score=90.22  Aligned_cols=86  Identities=20%  Similarity=0.250  Sum_probs=65.7

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.+.+.+....+.+|+.+.|.|.+.|.|   .+.++|+|++..+..    ..++......|.|.++..+|+|.|+|.| .
T Consensus         2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P---~P~v~W~k~~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~   73 (88)
T cd05851           2 ADINVKFKDTYALKGQNVTLECFALGNP---VPVIRWRKILEPMPA----TAEISMSGAVLKIFNIQPEDEGTYECEA-E   73 (88)
T ss_pred             CceEEccccEEEeCCCcEEEEEEecccC---CCEEEEEECCcCCCC----CCEEecCCCEEEECcCChhhCEEEEEEE-E
Confidence            3445566667788999999999999998   789999999887755    3344444568999999999999999999 7


Q ss_pred             CCCCCCCCceeeeeEE
Q psy15235        188 PKSTNTTPLAQADFDV  203 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v  203 (323)
                      |..+.  ....+.|.|
T Consensus        74 N~~G~--~~~~~~l~V   87 (88)
T cd05851          74 NIKGK--DKHQARVYV   87 (88)
T ss_pred             cCCCc--eEEEEEEEE
Confidence            87443  344444443

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.49  E-value=4.7e-13  Score=91.59  Aligned_cols=89  Identities=19%  Similarity=0.289  Sum_probs=59.9

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc----CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEe
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS----QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN  286 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~  286 (323)
                      .+.+..+.+|+.+.|.|.+.|+|.|.+.|+++|..+...    ..+....  ..+......+....+..+|+|.|+|.|.
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~D~G~Y~C~a~   84 (100)
T cd07693           7 HPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVL--PSGSLFFLRVVHGRKGRSDEGVYVCVAH   84 (100)
T ss_pred             cCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEe--cCCcEEEEEeeccCCCcCcCEEEEEEEE
Confidence            445677889999999999999999999999999887641    1111111  1111011112223347899999999999


Q ss_pred             ecccCCCCCceeEEEEEE
Q psy15235        287 NVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       287 n~~g~~~~~~~~~~~l~v  304 (323)
                      |..|.   ..+..+.|.|
T Consensus        85 N~~G~---~~s~~~~l~v   99 (100)
T cd07693          85 NSLGE---AVSRNASLEV   99 (100)
T ss_pred             ccccc---eecceEEEEe
Confidence            99965   2555666655

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.49  E-value=5.7e-13  Score=89.42  Aligned_cols=64  Identities=28%  Similarity=0.490  Sum_probs=52.4

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccC
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATR  291 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~  291 (323)
                      |+.+.|.|.+.|+|.|.++|+++|..+... ..++.+.        ...|.|.++. .+|.|.|+|.|.|..|.
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~   84 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--------AGNLVINNPQKARDAGSYQCLAINRCGT   84 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--------CCeEEEccCCccCcCEEEEEEEEcCcCc
Confidence            568999999999999999999999988633 2344433        4679998765 59999999999999976

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.49  E-value=2.2e-13  Score=90.75  Aligned_cols=81  Identities=17%  Similarity=0.366  Sum_probs=56.5

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECC----eeeeccC-CeeeeecC-CCC--CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGN----DTYFRSQ-GRIKLSEH-PEK--GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~----~~~~~~~-~~~~~~~~-~~~--~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      |+.+.|.|.+.|.|.|.++|++++    ..+.... ........ ...  ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999964    2221111 11111100 000  012457999999999999999999999976


Q ss_pred             CCCCceeEEEEEE
Q psy15235        292 NSQPNEAFVYVRV  304 (323)
Q Consensus       292 ~~~~~~~~~~l~v  304 (323)
                          ..+++.|.|
T Consensus        81 ----~~~sa~L~V   89 (90)
T cd04974          81 ----SHHSAWLTV   89 (90)
T ss_pred             ----ccCCEEEEe
Confidence                667777776

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.49  E-value=4.1e-13  Score=90.04  Aligned_cols=65  Identities=26%  Similarity=0.449  Sum_probs=53.2

Q ss_pred             eCCeEEEEEEEecCCCCcEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccC
Q psy15235        219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATR  291 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~  291 (323)
                      +|+.+.|.|.+.|.|.|.++|++++..+.... .++...        ...|.|.++. .+|.|.|+|.|.|..|.
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~--------~g~L~i~~~~~~~D~G~Y~C~A~N~~G~   84 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI--------DGNLIISNPSEVKDSGRYQCLATNSIGS   84 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee--------CCeEEEccCCccCcCEEEEEEEEcCCCe
Confidence            47899999999999999999999998885332 233333        4678998875 69999999999999976

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.48  E-value=7.4e-13  Score=88.46  Aligned_cols=85  Identities=22%  Similarity=0.411  Sum_probs=61.6

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEE-CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      |....+..|+++.|.|.+.|.|+ .+.|++ ++..+... .+.....   .....++|+|.+++.+|+|.|+|.|.|..|
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~-~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQ-QQISVVQ---NDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccC-CCEEEEe---CCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            34566889999999999999964 999998 55554432 3333221   112357899999999999999999999975


Q ss_pred             CCCCCceeEEEEEE
Q psy15235        291 RNSQPNEAFVYVRV  304 (323)
Q Consensus       291 ~~~~~~~~~~~l~v  304 (323)
                      .   ....++.|.|
T Consensus        82 ~---~~~~sv~l~~   92 (92)
T cd04977          82 T---ESEATVNLKI   92 (92)
T ss_pred             C---cceeEEEEEC
Confidence            3   2566666653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.48  E-value=2.3e-13  Score=90.95  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=61.7

Q ss_pred             eeEEeeCCeEEEEEEEec-----CCCCcEEEEECCeeeecc---CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235        214 TLTVIEGEKLRLECLVVG-----SPPPTVEWRIGNDTYFRS---QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG  285 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a  285 (323)
                      +..+.+|+.+.|.|.+.|     .|.+.+.|++++..+...   ..++..        ....|.|.++..+|+|.|+|.+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--------~~~~L~I~~~~~~DsG~Y~C~~   79 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--------QKDLLWFLPAALEDSGLYTCVV   79 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--------cCCeEEEccCCcccCeEEEEEE
Confidence            456778999999999988     688899999998764321   122221        2468999999999999999999


Q ss_pred             eecccCCCCCceeEEEEEE
Q psy15235        286 NNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       286 ~n~~g~~~~~~~~~~~l~v  304 (323)
                      .|..|.    .+..+.|.|
T Consensus        80 ~N~~g~----~~~~~~L~v   94 (94)
T cd05756          80 RNSTYC----MKVSISLTV   94 (94)
T ss_pred             cCCCcc----EEEEEEEEC
Confidence            999965    777777654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.47  E-value=5.9e-13  Score=88.76  Aligned_cols=81  Identities=19%  Similarity=0.370  Sum_probs=56.9

Q ss_pred             CCeEEEEEEEecCCCCcEEEEEC----CeeeeccC-CeeeeecCCC---CCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIG----NDTYFRSQ-GRIKLSEHPE---KGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~----~~~~~~~~-~~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      |+.+.|.|.+.|.|.|.+.|+++    +..+...+ ....+.....   .....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            68899999999999999999984    33332111 1111110000   0012368999999999999999999999976


Q ss_pred             CCCCceeEEEEEE
Q psy15235        292 NSQPNEAFVYVRV  304 (323)
Q Consensus       292 ~~~~~~~~~~l~v  304 (323)
                          ...++.|.|
T Consensus        81 ----~~~~a~L~V   89 (90)
T cd05858          81 ----SHHSAWLTV   89 (90)
T ss_pred             ----ccceEEEEE
Confidence                667777766

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.46  E-value=6.6e-13  Score=85.60  Aligned_cols=74  Identities=24%  Similarity=0.381  Sum_probs=58.8

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                      +.|.|.+.|.|+|.+.|++++..+.... .++...  .    ....|.|.++..+|.|.|+|.|.|..|.    .+..+.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~--~----~~~~l~I~~~~~~D~G~Y~C~a~N~~G~----~~~~~~   70 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLI--A----NGSELHISNVRYEDTGAYTCIAKNEAGV----DEDISS   70 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEe--C----CCCEEEECcCCcccCEEEEEEEEcCCCC----cceEEE
Confidence            3689999999999999999998875432 223322  1    2467999999999999999999999966    778888


Q ss_pred             EEEcc
Q psy15235        302 VRVKG  306 (323)
Q Consensus       302 l~v~~  306 (323)
                      |.|.+
T Consensus        71 l~V~~   75 (76)
T cd05736          71 LFVED   75 (76)
T ss_pred             EEEEc
Confidence            87753

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.46  E-value=7.4e-13  Score=89.34  Aligned_cols=83  Identities=23%  Similarity=0.376  Sum_probs=61.5

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC-eeeeecCCCCCCcceeEEEeec-----CcCCCeEEEEEE
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG-RIKLSEHPEKGTANSVLQIDEA-----TMADRGNYYCHG  285 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v-----~~~d~G~y~C~a  285 (323)
                      |.+..+.+|+++.|.|.+.|.|.|.+.|+++|..+..... +....       ....|.|.++     ..+|.|.|+|.|
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~-------~~~~l~i~~v~~~~~~~~D~G~Y~C~a   78 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQL-------PNGSLLITSVVHSKHNKPDEGFYQCVA   78 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEc-------cCCeEEEeeeeccCCCCCcCEEEEEEE
Confidence            4456677899999999999999999999999988764322 22222       2455777766     588999999999


Q ss_pred             eec-ccCCCCCceeEEEEEE
Q psy15235        286 NNV-ATRNSQPNEAFVYVRV  304 (323)
Q Consensus       286 ~n~-~g~~~~~~~~~~~l~v  304 (323)
                      .|. .|.   ..+..+.|.|
T Consensus        79 ~N~~~G~---~~s~~~~l~v   95 (95)
T cd05722          79 QNDSLGS---IVSRTARLTV   95 (95)
T ss_pred             ECCccCc---EEEeeeEEeC
Confidence            999 876   1345555543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.46  E-value=4.2e-13  Score=86.19  Aligned_cols=62  Identities=24%  Similarity=0.437  Sum_probs=52.1

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      |+...+.+|++++|.|.+.+.|.+ .+.|++|+..+..               ....|+|.++ .+|+|.|+|.|.|..
T Consensus         7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~---------------~~~~l~i~~~-~~dsG~Y~C~a~~~~   69 (78)
T cd05752           7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET---------------TTNSYRIRAA-NNDSGEYRCQTQGSS   69 (78)
T ss_pred             CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec---------------cCCeEEEeec-ccCCEEeEEECCCCc
Confidence            445778899999999999988764 6999999987731               2567999999 999999999999864

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.44  E-value=7.8e-13  Score=85.46  Aligned_cols=67  Identities=24%  Similarity=0.446  Sum_probs=54.7

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      |.+..+.+|+++.|.|.+.|+|.| ++.|+++|..+..   ....        ..+.|+|..+  .|.|.|.|.|.|..|
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~---~~~~--------~~s~L~i~~~--~d~g~Y~C~A~N~~G   71 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD---PPAP--------SPSVLNVPGL--NETSKFSCEAHNAKG   71 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC---CCCC--------CCCEEEEccc--cCCeEEEEEEEeccC
Confidence            446778899999999999999999 7999999988753   1111        2568999887  478999999999997


Q ss_pred             C
Q psy15235        291 R  291 (323)
Q Consensus       291 ~  291 (323)
                      .
T Consensus        72 ~   72 (81)
T cd05749          72 V   72 (81)
T ss_pred             c
Confidence            5

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.44  E-value=5.4e-13  Score=85.42  Aligned_cols=64  Identities=22%  Similarity=0.416  Sum_probs=53.4

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      +|+.+.|.|.+.|.|   .+.|.|++++..+..    ..++. .....|.|.+++.+|+|.|+|.| .|..+.
T Consensus         1 eG~~v~l~C~~~g~P---~p~i~W~k~g~~~~~----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~N~~G~   65 (74)
T cd05745           1 EGQTVDFLCEAQGYP---QPVIAWTKGGSQLSV----DRRHLVLSSGTLRISRVALHDQGQYECQA-VNIVGS   65 (74)
T ss_pred             CCCeEEEEeECCEec---CCEEEEEECCEECCC----CCCeEEccCCeEEEeeCCHHhCEEEEEEE-EeCCCc
Confidence            589999999999998   789999999988765    33433 45568999999999999999999 787433

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.44  E-value=6.4e-13  Score=84.34  Aligned_cols=63  Identities=21%  Similarity=0.449  Sum_probs=53.3

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      |+++.|.|.+.+.|   .+.|.|+|++..+..    ..++. ..+..|.|.+++.+|+|.|+|.| .|..+.
T Consensus         1 G~~~~l~C~~~g~P---~p~v~W~k~~~~l~~----~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A-~N~~G~   64 (73)
T cd05852           1 GGRVIIECKPKAAP---KPKFSWSKGTELLVN----NSRISIWDDGSLEILNITKLDEGSYTCFA-ENNRGK   64 (73)
T ss_pred             CCeEEEEEecceeC---CCEEEEEeCCEeccc----CCCEEEcCCCEEEECcCChhHCEEEEEEE-ECCCCc
Confidence            67899999999988   789999999987765    55665 45678999999999999999999 787433

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.43  E-value=8.9e-13  Score=86.74  Aligned_cols=79  Identities=24%  Similarity=0.364  Sum_probs=56.8

Q ss_pred             CCeEEEEEEEecC--CCCcEEEEECCeeeeccCCe--eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235        220 GEKLRLECLVVGS--PPPTVEWRIGNDTYFRSQGR--IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP  295 (323)
Q Consensus       220 g~~~~l~C~~~g~--p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~  295 (323)
                      |+.+.|.|.+.|.  |.+.+.|++++..+......  ....  .......++|+|.+++.+|+|.|+|.|.|..|+    
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~----   74 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSL--SEATELSSTLTIPNATLKDSGTYTCAASSGTMD----   74 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeeccccc--ccceEEEEEEEECCCChhhCEEEEEEEccCCCc----
Confidence            7899999999998  78899999887654321110  0000  111124688999999999999999999999976    


Q ss_pred             ceeEEEEEE
Q psy15235        296 NEAFVYVRV  304 (323)
Q Consensus       296 ~~~~~~l~v  304 (323)
                      ...+..|.|
T Consensus        75 ~~~s~~v~v   83 (84)
T cd05742          75 QKESTKVNI   83 (84)
T ss_pred             eEEEEEEEE
Confidence            555555544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.43  E-value=8.2e-13  Score=85.80  Aligned_cols=72  Identities=29%  Similarity=0.505  Sum_probs=53.5

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeec-------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFR-------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP  295 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~  295 (323)
                      ++|.|.+.|+|.|.+.|++++.....       ..+++...       ...+|.|.++..+|+|.|+|.|.|..|.   .
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~---~   70 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL-------SNGSLLIKHVLEEDSGYYLCKVSNDVGA---D   70 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe-------cCCeEEECcCCcccCEEEEEEEEeCCCC---C
Confidence            47999999999999999997543210       22333333       3578999999999999999999999976   2


Q ss_pred             ceeEEEEEE
Q psy15235        296 NEAFVYVRV  304 (323)
Q Consensus       296 ~~~~~~l~v  304 (323)
                      .+..+.|.|
T Consensus        71 ~s~~~~l~~   79 (79)
T cd05734          71 ASKSMVLTV   79 (79)
T ss_pred             CceEEEEeC
Confidence            355666543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.43  E-value=8.7e-13  Score=86.34  Aligned_cols=74  Identities=27%  Similarity=0.449  Sum_probs=55.9

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCe---eeeccC----CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGND---TYFRSQ----GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      |+.+.|.|.+.|.|.|.+.|++++.   .+....    .++...       ....|.|.+++.+|+|.|+|.|.|..|. 
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-   72 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT-------NIGQLVIYNAQPQDAGLYTCTARNSGGL-   72 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc-------cccEEEEccCCcccCEEEEEEEecCCce-
Confidence            6889999999999999999999742   111110    111111       2478999999999999999999999965 


Q ss_pred             CCCceeEEEEEE
Q psy15235        293 SQPNEAFVYVRV  304 (323)
Q Consensus       293 ~~~~~~~~~l~v  304 (323)
                         ....+.|.|
T Consensus        73 ---~~~~~~l~v   81 (81)
T cd05765          73 ---LRANFPLSV   81 (81)
T ss_pred             ---EEEEEEEeC
Confidence               777777764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.43  E-value=8.1e-13  Score=85.07  Aligned_cols=65  Identities=29%  Similarity=0.463  Sum_probs=51.0

Q ss_pred             EEEEEEEec-CCCCcEEEEECCeeeeccCCee--eeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRI--KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       223 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +.|.|.+.| .|.|.+.|++++..+.......  .+.    ......+|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   68 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR----NKKKNSELQINKAKLADSGEYTCVVENILGN   68 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEE----ecCceEEEEEccCCcccCeEEEEEEEEcCCc
Confidence            469999998 8999999999998876433211  121    1113578999999999999999999999976

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.43  E-value=2.2e-12  Score=87.25  Aligned_cols=79  Identities=15%  Similarity=0.222  Sum_probs=59.5

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---e------ceeEEEEeeeecCCCeeEEEEEE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---Q------SKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~------~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      ...+..|+++.|.|.+.+++|  .+.+.|+|||.++..    .....   .      ....|.|..+..+|+|.|+|.| 
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P--~p~v~W~Kdg~~i~~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A-   84 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPP--PPHINWTYDNRTLTN----KLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLA-   84 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCC--CCccEEEeCCeeCCC----CcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEE-
Confidence            455778999999999999433  789999999999875    22211   1      2477999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEE
Q psy15235        187 DPKSTNTTPLAQADFDV  203 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v  203 (323)
                      .|..+  ..+..+.|.|
T Consensus        85 ~N~~G--~~~~t~~L~V   99 (101)
T cd04975          85 SNSDA--SKSLTFELYV   99 (101)
T ss_pred             ECCCc--cEEEEEEEEE
Confidence            78843  3444555544

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.42  E-value=2.2e-12  Score=86.34  Aligned_cols=69  Identities=23%  Similarity=0.449  Sum_probs=56.5

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      |....+.+|+++.|.|.+.+.|   .+.+.|++++.++..    ..++.     .....|.|.++..+|+|.|+|.+ .|
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N   79 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDP---DPEVSWLKNDQALAL----SDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVV-KN   79 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecC---CCeEEEEECCEECcc----CCCEEEEEcCCCEEEEEEccCChhhCEEEEEEE-EE
Confidence            4455678899999999999988   789999999998865    33332     22457999999999999999999 77


Q ss_pred             CC
Q psy15235        189 KS  190 (323)
Q Consensus       189 ~~  190 (323)
                      ..
T Consensus        80 ~~   81 (92)
T cd05737          80 KY   81 (92)
T ss_pred             CC
Confidence            74

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.41  E-value=1.8e-12  Score=85.40  Aligned_cols=71  Identities=17%  Similarity=0.378  Sum_probs=60.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      .|....+..|+.+.|.|.+.+.|   .+.+.|++++..+..    ..++......|.|.++..+|+|.|+|.| .|..+
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p---~p~v~W~k~g~~~~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a-~N~~G   75 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNP---RPAYRWLKNGQPLAS----ENRIEVEAGDLRITKLSLSDSGMYQCVA-ENKHG   75 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeC---CCEEEEEECCEECCC----CCeEEEeCCEEEEeeCCHHHCEEEEEEE-ECCCC
Confidence            56667788999999999999988   789999999998865    4555555668999999999999999999 77743

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.41  E-value=3.4e-12  Score=85.36  Aligned_cols=73  Identities=30%  Similarity=0.574  Sum_probs=61.8

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEE
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .+...+....+..|+++.|.|.+.+.+   .+.+.|++++..+..    ..++.    .....|.|.++..+|+|.|+|.
T Consensus         2 ~~~~~~~~~~v~~G~~~~l~c~~~~~p---~~~v~W~~~~~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   74 (90)
T PF07679_consen    2 VFTKKPKDVTVKEGESVTLECEVSGNP---PPTVTWYKNGRPLTS----SQRYQIESDGGSSSLTIKNVTREDAGTYTCV   74 (90)
T ss_dssp             EEEEESSEEEEETTSEEEEEEEEEESS---SSEEEEEETTEEEES----SSSEEEEEETTEEEEEESSESGGGSEEEEEE
T ss_pred             EEEEecCCEEEeCCCEEEEEEEEEeCC---CCcccccccccceee----eeeeeeecccceeEEccCCCChhhCEEEEEE
Confidence            344456677788999999999999987   789999999999987    45544    5678999999999999999999


Q ss_pred             EEcCC
Q psy15235        185 LIDPK  189 (323)
Q Consensus       185 ~~~~~  189 (323)
                      + .+.
T Consensus        75 ~-~n~   78 (90)
T PF07679_consen   75 A-SNS   78 (90)
T ss_dssp             E-EET
T ss_pred             E-EEC
Confidence            9 666

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.41  E-value=4.8e-12  Score=82.93  Aligned_cols=82  Identities=22%  Similarity=0.352  Sum_probs=58.5

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccCCe-eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR-IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA  298 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~  298 (323)
                      |++++|.|.+.++|.+.+.|+++++........ ....  .......++|+|.+++.+|+|.|+|.|.|..+.  .....
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~--~~~~~   76 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVK--VPATTLRSTLTFPHATVEDSGTYECAAHESTQD--QKAFK   76 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEe--cCCcEEEEEEEECCCCcCCCEEEEEEEEECccC--cceeE
Confidence            789999999999999999999877643211110 0011  011123689999999999999999999998753  34677


Q ss_pred             EEEEEEc
Q psy15235        299 FVYVRVK  305 (323)
Q Consensus       299 ~~~l~v~  305 (323)
                      ++.|.|.
T Consensus        77 sv~i~V~   83 (84)
T cd05861          77 KVNITVH   83 (84)
T ss_pred             EEEEEEe
Confidence            7777764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.40  E-value=1.4e-12  Score=84.04  Aligned_cols=63  Identities=24%  Similarity=0.514  Sum_probs=49.3

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCc----CCCeEEEEEEeecccC
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATM----ADRGNYYCHGNNVATR  291 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~y~C~a~n~~g~  291 (323)
                      +.|.|.+.|+|.|.++|++++..+... ..++....      ..+.|.|.++..    +|+|.|+|.|.|..|.
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~------~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~   68 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP------DSGTLVIDNMNGGRAEDYEGEYQCYASNELGT   68 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeC------CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCc
Confidence            478999999999999999999887432 23333321      357899998754    7899999999999976

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.39  E-value=1.2e-12  Score=82.90  Aligned_cols=60  Identities=37%  Similarity=0.581  Sum_probs=50.5

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      +.|.|.+.|.|   .+.+.|+|+|.++..    ..++......|.|.++..+|+|.|+|.+ .|..+.
T Consensus         1 ~~l~c~v~g~P---~p~v~W~k~g~~l~~----~~~~~~~~~~L~I~~v~~~D~G~YtC~a-~N~~g~   60 (71)
T cd04976           1 VRLPVKVKAYP---PPEIQWYKNGKLISE----KNRTKKSGHSLTIKDVTEEDAGNYTVVL-TNKQAK   60 (71)
T ss_pred             CEEEeEEEEeC---CCEEEEEECCEECCC----CCEEEcCCCEEEECcCCHHHCEEEEEEE-EcCCcc
Confidence            46899999998   789999999999876    4455555678999999999999999999 777433

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.39  E-value=2.6e-12  Score=82.61  Aligned_cols=63  Identities=21%  Similarity=0.492  Sum_probs=47.5

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCcC----CCeEEEEEEeecccC
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATMA----DRGNYYCHGNNVATR  291 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~----d~G~y~C~a~n~~g~  291 (323)
                      +.|.|.+.|+|.|++.|++++..+... ..++.+.  .    ..++|.|..+..+    |.|.|+|.|.|..|.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~--~----~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~   68 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK--P----NTGTLVINIMNGEKAEAYEGVYQCTARNERGA   68 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe--C----CCceEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence            479999999999999999999876322 2223222  1    2567888877643    789999999999976

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.39  E-value=3.2e-12  Score=82.16  Aligned_cols=63  Identities=24%  Similarity=0.468  Sum_probs=48.0

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeee-ccCCeeeeecCCCCCCcceeEEEeecCc----CCCeEEEEEEeecccC
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYF-RSQGRIKLSEHPEKGTANSVLQIDEATM----ADRGNYYCHGNNVATR  291 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~y~C~a~n~~g~  291 (323)
                      +.|.|.+.|+|.|.++|++++..+. ..+.++.+..      ..++|.|..+..    +|.|+|+|.|.|..|.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~------~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~   68 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR------RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGT   68 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC------CCceEEEeccCCCCCCCCCEEEEEEEEeccce
Confidence            4689999999999999999998763 2233443321      357899987642    4699999999999976

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.38  E-value=5.2e-12  Score=84.60  Aligned_cols=76  Identities=18%  Similarity=0.368  Sum_probs=62.0

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      |.+...|....+..|+.+.|.|.+.+.|   .+.+.|+++|..+..    ..++.    .....|.|.++..+|+|.|.|
T Consensus         4 ~~~~~~p~~~~~~~G~~~~L~C~~~g~P---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   76 (92)
T cd05747           4 ATILTKPRSLTVSEGESARFSCDVDGEP---APTVTWMREGQIIVS----SQRHQITSTEYKSTFEISKVQMSDEGNYTV   76 (92)
T ss_pred             CcccccCccEEEeCCCcEEEEEEEeecC---CCEEEEEECCEECCC----CCcEEEEEcCCeeEEEECCCCcccCEeEEE
Confidence            4445567777789999999999999998   789999999988765    44443    235689999999999999999


Q ss_pred             EEEcCCCC
Q psy15235        184 RLIDPKST  191 (323)
Q Consensus       184 ~~~~~~~~  191 (323)
                      .+ .|..+
T Consensus        77 ~a-~N~~G   83 (92)
T cd05747          77 VV-ENSEG   83 (92)
T ss_pred             EE-EcCCC
Confidence            99 77743

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.38  E-value=4.2e-12  Score=81.52  Aligned_cols=67  Identities=24%  Similarity=0.509  Sum_probs=54.4

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .+.+.|+...+.+|++++|+|.+.+.+.  ...+.|++||..+..          ....|.|.++ .+|+|.|+|.+ .+
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~--~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a-~~   67 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFNSPE--QNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQT-QG   67 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCCCCC--CccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEEC-CC
Confidence            3445677777889999999999998763  357999999988743          3567899999 99999999999 65


Q ss_pred             C
Q psy15235        189 K  189 (323)
Q Consensus       189 ~  189 (323)
                      .
T Consensus        68 ~   68 (78)
T cd05752          68 S   68 (78)
T ss_pred             C
Confidence            4

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.38  E-value=2.5e-12  Score=83.23  Aligned_cols=73  Identities=19%  Similarity=0.323  Sum_probs=57.3

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA  197 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  197 (323)
                      |+++.|.|.+.+.|   .+.+.|++++..+..    ..++.    .....|.|.++..+|+|.|+|.+ .|..+......
T Consensus         1 G~~v~l~C~~~g~P---~p~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~~~~~~   72 (78)
T cd05743           1 GETVEFTCVATGVP---TPIINWRLNWGHVPD----SARVSITSEGGYGTLTIRDVKESDQGAYTCEA-INTRGMVFGIP   72 (78)
T ss_pred             CCEEEEEEEEEEec---CCEEEEEECCeECCC----CCCEEEEECCCEEEEEECCCChHHCEEEEEEE-EecCCEEEecc
Confidence            68899999999988   789999999887765    34443    34578999999999999999999 78865554454


Q ss_pred             eeeeE
Q psy15235        198 QADFD  202 (323)
Q Consensus       198 ~~~l~  202 (323)
                      ...|+
T Consensus        73 ~~~~~   77 (78)
T cd05743          73 DGILT   77 (78)
T ss_pred             cEEEE
Confidence            44443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.37  E-value=1.3e-12  Score=80.90  Aligned_cols=65  Identities=25%  Similarity=0.403  Sum_probs=50.7

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      +.|.|.+.|.|   .|.+.|||||.++..    .    .....|.|.++..+|+|.|+|.| .|..+.  .+.++.+++
T Consensus         1 ~~l~c~v~g~P---~P~v~W~kdg~~l~~----~----~~~~~L~i~~v~~~D~G~YtC~a-~N~~g~--~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYP---PPEFQWYKDGKLISG----K----HSQHSLQIKDVTEASAGTYTLVL-WNSAAG--LEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeC---CCEEEEEECCEECcc----c----CCcCEEEECCCCHHHCEEEEEEE-EECCcc--EEEEEEEEE
Confidence            47999999999   799999999998863    1    23568999999999999999999 777443  334444443

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.37  E-value=3.6e-12  Score=83.05  Aligned_cols=69  Identities=22%  Similarity=0.291  Sum_probs=57.4

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      |.+..+..|+++.|.|.+.+ |.+.+.|++||..+..+..++.+.        ...|.|.+++.+|+|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~--------~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY--------RDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE--------CCcEEEeCCCHHHCEEEEEEEEecc
Confidence            34567889999999999864 678999999999987654565554        4679999999999999999999874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.36  E-value=6.3e-12  Score=81.45  Aligned_cols=67  Identities=19%  Similarity=0.351  Sum_probs=54.6

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ....+.+|+.+.|.|.+.+.+    +.+.|+|+|.++..    ..++......|.|.+++.+|+|.|+|.+ .|..
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~~----~~v~W~k~g~~l~~----~~~~~~~~~~L~I~~~~~~DsG~Y~C~a-~n~~   68 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDDV----QSINWTKDGVQLGE----NNRTRITGEEVQIKDAVPRDSGLYACVT-SSPS   68 (79)
T ss_pred             CcEEecCCCCEEEEEEecCCC----ceEEEeeCCcCCCC----CceEEEeCCEEEECCCChhhCEEEEEEE-eCCC
Confidence            445677899999999998854    47999999998876    4455433468999999999999999999 6763

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.36  E-value=7.5e-12  Score=83.14  Aligned_cols=81  Identities=25%  Similarity=0.324  Sum_probs=62.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      .|....+.+|+.+.|.|.+.+.|   .+.+.|++++..+..    ..........|.|.+++.+|+|.|+|.+ .|..+.
T Consensus         7 ~p~~~~~~~g~~v~l~C~~~g~P---~p~v~W~k~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N~~G~   78 (88)
T cd04968           7 FPKDTYALKGQNVTLECFALGNP---VPQIKWRKVDGSMPS----SAEISMSGAVLKIPNIQFEDEGTYECEA-ENIKGK   78 (88)
T ss_pred             CCCceEEeCCCcEEEEEEeeEeC---CCEEEEEECCCcCCC----ccEEEEeCCEEEECCCCcccCEEEEEEE-EECCCc
Confidence            55666678899999999999988   789999998876644    2333345678999999999999999999 787444


Q ss_pred             CCCceeeeeEE
Q psy15235        193 TTPLAQADFDV  203 (323)
Q Consensus       193 ~~~~~~~~l~v  203 (323)
                        ......|.|
T Consensus        79 --~~~~~~l~V   87 (88)
T cd04968          79 --DTHQGRIYV   87 (88)
T ss_pred             --EEEEEEEEE
Confidence              444444444

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.36  E-value=9.1e-12  Score=81.94  Aligned_cols=68  Identities=22%  Similarity=0.411  Sum_probs=55.8

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      ..+..|+.+.|.|.+.|.|   .|.+.|++++.++...   ..++.    .....|.|.++..+|+|.|+|.| .|..+
T Consensus         5 ~~v~~G~~v~l~c~~~G~P---~P~v~W~k~~~~i~~~---~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a-~N~~G   76 (86)
T cd05894           5 IVVVAGNKLRLDVPISGEP---APTVTWSRGDKAFTET---EGRVRVESYKDLSSFVIEGAEREDEGVYTITV-TNPVG   76 (86)
T ss_pred             EEEEcCCEEEEEeeEeecC---CCeEEEEECCEECccC---CCeEEEEEcCCeEEEEECCCccCcCEEEEEEE-EeCCC
Confidence            4467899999999999999   7999999999988651   22443    23578999999999999999999 78743

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.36  E-value=2e-12  Score=81.06  Aligned_cols=68  Identities=21%  Similarity=0.306  Sum_probs=52.6

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF  201 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l  201 (323)
                      +.|.|.+.|.|   .|.+.|+|+|.++..    ..++ .....|.|.++..+|+|.|+|.+ .|..+......++.|
T Consensus         1 ~~~~c~v~G~P---~P~v~W~k~g~~l~~----~~~~-~~~~~L~I~~v~~~D~G~YtC~a-~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYP---PPEVKWYKNGQLIVL----NHTF-KRGVHLTIYEVTEKDAGNYTVVL-TNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeC---CCEEEEEECCEECCC----CCEE-ccCCEEEECcCCHHHCEEEEEEE-EECCCceeeEEEEEE
Confidence            46899999999   799999999999875    3333 23457999999999999999999 788555444444443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.35  E-value=4.6e-12  Score=80.68  Aligned_cols=61  Identities=20%  Similarity=0.459  Sum_probs=48.5

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      +.|.|.+.|.|   .|.|.|+|++..+...   ..++.     .....|.|.++..+|+|.|+|.| .|..|.
T Consensus         1 v~l~C~v~G~P---~P~i~W~k~~~~i~~~---~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A-~N~~G~   66 (75)
T cd05892           1 VKLECQISAIP---PPKIFWKRNNEMVQYN---TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSA-VNEAGV   66 (75)
T ss_pred             CEEEEEEEecC---CCeEEEEECCEECcCC---CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEE-EcCcCe
Confidence            57999999998   8999999999988641   23443     12247999999999999999999 787443

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.35  E-value=7.4e-12  Score=80.56  Aligned_cols=75  Identities=23%  Similarity=0.356  Sum_probs=56.0

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF  201 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l  201 (323)
                      |+++.|.|.+.+.|   .+.++|+++|.++.... ...++......|.|.+++.+|+|.|+|.+ .|..+.  ....+.|
T Consensus         1 G~~v~l~C~~~G~P---~p~i~W~k~g~~i~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G~--~~~~~~l   73 (76)
T cd05867           1 GETARLDCQVEGIP---TPNITWSINGAPIEGTD-PDPRRHVSSGALILTDVQPSDTAVYQCEA-RNRHGN--LLANAHV   73 (76)
T ss_pred             CCeEEEEEEeeEeC---CCeEEEEECCEECCCCC-CCceEEeeCCEEEECCCChhhCEEEEEEE-ECCCCe--EEEEEEE
Confidence            68899999999988   78999999998876411 12234444568999999999999999999 787433  3334444


Q ss_pred             EE
Q psy15235        202 DV  203 (323)
Q Consensus       202 ~v  203 (323)
                      .|
T Consensus        74 ~V   75 (76)
T cd05867          74 HV   75 (76)
T ss_pred             EE
Confidence            43

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.35  E-value=5.9e-12  Score=83.55  Aligned_cols=81  Identities=19%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             eEEeeCCeEEEEEEEec-----CCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        215 LTVIEGEKLRLECLVVG-----SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ..+..|++..|.|...+     +|.|.+.|++++..+.....+..         ....|.|.++..+|+|.|+|.|.|..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~---------~~~~L~I~~v~~~DsG~YtC~~~n~~   75 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV---------KGSKLLIQNVTEEDAGNYTCKLTFTH   75 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe---------cCCEEEEeeCChhhCEEEEEEEEecC
Confidence            45678999999998843     25779999999998864433221         26789999999999999999999998


Q ss_pred             cCCCCCceeEEEEEE
Q psy15235        290 TRNSQPNEAFVYVRV  304 (323)
Q Consensus       290 g~~~~~~~~~~~l~v  304 (323)
                      |.........+.|.|
T Consensus        76 ~~~~~~~t~t~~l~v   90 (92)
T cd05757          76 NGKQYNVTRTISLTV   90 (92)
T ss_pred             CCEEEEEEEEEEEEE
Confidence            663333444444443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.34  E-value=6.5e-12  Score=80.17  Aligned_cols=63  Identities=25%  Similarity=0.465  Sum_probs=52.5

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      |+.+.|.|.+.+.|   .+.+.|++++..+..    ..++. .....|.|.+++.+|+|.|+|.+ .|..+.
T Consensus         1 G~~v~L~C~~~g~P---~p~v~W~k~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N~~G~   64 (73)
T cd04969           1 GGDVIIECKPKAAP---KPTISWSKGTELLTN----SSRICIWPDGSLEILNVTKSDEGKYTCFA-ENFFGK   64 (73)
T ss_pred             CCeEEEEEeeeEcC---CCEEEEEECCEEccc----CCCEEECCCCeEEEccCChhHCEEEEEEE-ECCCCc
Confidence            67899999999988   789999999988765    45555 34567999999999999999999 787433

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.34  E-value=1.2e-11  Score=82.33  Aligned_cols=81  Identities=25%  Similarity=0.361  Sum_probs=62.4

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC---CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ---GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ...+.+|+.+.|.|.+.+ |.+.+.|++++..+....   .++...        ...|.|.+++.+|+|.|+|.|.+..+
T Consensus         5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~~~~~   75 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--------EDGLLIRSVSPADAGVYTCQSVEHGF   75 (89)
T ss_pred             EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--------CCCEEEccCCHHHCEEEEEEEecCcc
Confidence            456788999999999976 788999999998765432   233322        35599999999999999999998764


Q ss_pred             CCCCCceeEEEEEEcc
Q psy15235        291 RNSQPNEAFVYVRVKG  306 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~  306 (323)
                      .   .....+.|.|.+
T Consensus        76 ~---~~~~~~~l~V~~   88 (89)
T cd04979          76 K---QTLATYSLNVLE   88 (89)
T ss_pred             c---eeEeEEEEEEec
Confidence            3   467777777753

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.33  E-value=2.6e-11  Score=80.10  Aligned_cols=81  Identities=23%  Similarity=0.380  Sum_probs=61.5

Q ss_pred             EEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235        216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP  295 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~  295 (323)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+..... .....   .......|.|.++..+|+|.|.|.+.|..|.    
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~-~~~~~---~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~----   76 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHR-IGGYK---VRKKKWTLILESVVPSDSGKYTCIVENKYGS----   76 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCc-eeEEE---ccCcEEEEEEeECCcccCEEEEEEEEECCce----
Confidence            456799999999999999999999999887653221 11110   0113467999999999999999999999965    


Q ss_pred             ceeEEEEEE
Q psy15235        296 NEAFVYVRV  304 (323)
Q Consensus       296 ~~~~~~l~v  304 (323)
                      ...++.|.|
T Consensus        77 ~~~~~~l~v   85 (85)
T cd05729          77 INHTYKVDV   85 (85)
T ss_pred             EEEEEEEeC
Confidence            667777654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.33  E-value=1.8e-11  Score=81.23  Aligned_cols=80  Identities=21%  Similarity=0.397  Sum_probs=59.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      .+....+..|+++.|.|.+.|.|   . .+.|+++ +..+..    ..++.    .....|.|.++..+|+|.|+|.| .
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P---~-~v~W~k~~g~~~~~----~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A-~   76 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEP---E-SIDWYNPQGEKIVS----SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA-T   76 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeC---C-eEEEEeCCCeEecC----CCCEEEEeCCCeeEEEEecCChHHCEEEEEEE-E
Confidence            45556688899999999999977   6 8999984 666654    44554    22358999999999999999999 7


Q ss_pred             CCCCCCCCceeeeeE
Q psy15235        188 PKSTNTTPLAQADFD  202 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~  202 (323)
                      |..+.. ...++.|.
T Consensus        77 N~~G~~-~~~~i~l~   90 (92)
T cd05866          77 DAKGQT-QEATVVLE   90 (92)
T ss_pred             cCCCcE-EEEEEEEE
Confidence            774432 24444444

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.33  E-value=4.6e-12  Score=79.54  Aligned_cols=67  Identities=25%  Similarity=0.353  Sum_probs=51.0

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ  198 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  198 (323)
                      +.|.|.+.|.|   .|.+.|+|++.++...   ..++......|.|.++..+|+|.|+|.+ .+..........
T Consensus         1 ~~l~c~v~g~P---~P~v~W~kdg~~l~~~---~~~~~~~~~~L~I~~v~~~D~G~YtC~a-~~~~~~~~~~~~   67 (72)
T cd07702           1 YRLTPKVKAFP---APEVIWLKDGLPAAEK---CSRYHVDGYSLVIKDVTEEDAGIYTILL-GIKQYNLFKNLT   67 (72)
T ss_pred             CeEEeeEEEcC---CCeEEEEECCEECCCC---CcEEEeCCCEEEECcCCHHHCEEEEEEE-EccccceEeeEE
Confidence            36899999999   7899999999887651   1344444458999999999999999999 776444333333

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.33  E-value=1.4e-11  Score=83.44  Aligned_cols=78  Identities=14%  Similarity=0.227  Sum_probs=59.7

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----------eceeEEEEeeeecCCCeeEEEEE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----------QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      ...+..|+.+.|.|.+.|+|   .|.+.|+|||.++..    +.+..          .....|.|.++..+|+|.|+|.|
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P---~P~v~W~kdg~~l~~----~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A   84 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYP---PPQIRWLKDNRTLIE----NLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALA   84 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeC---CCceEEEECCEECcC----CcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEE
Confidence            45577899999999999999   789999999999875    22211          12368999999999999999999


Q ss_pred             EcCCCCCCCCceeeeeEE
Q psy15235        186 IDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       186 ~~~~~~~~~~~~~~~l~v  203 (323)
                       .|..+  ..+.++.|.|
T Consensus        85 -~N~~g--~~~~t~~l~V   99 (101)
T cd05859          85 -QNEDA--VKSYTFALQI   99 (101)
T ss_pred             -EcCCc--eEEEEEEEEE
Confidence             77733  3444555544

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.33  E-value=2.3e-11  Score=81.08  Aligned_cols=72  Identities=13%  Similarity=0.216  Sum_probs=57.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .|....+..|+.+.|.|.+.|.|   .+.+.|++++..+..    .....    .....|.|.++..+|.|.|+|.| .|
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P---~p~v~W~~~g~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A-~N   77 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSP---LPKVEWIIAGLIVIQ----TRTDTLETTVDIYNLQLSNITSETQTTVTCTA-EN   77 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcC---CCeEEEEECCEEccC----CccEEEEecCCEEEEEEecCCcccCEEEEEEE-EC
Confidence            44555588999999999999988   899999999987754    22211    34568999999999999999999 77


Q ss_pred             CCCC
Q psy15235        189 KSTN  192 (323)
Q Consensus       189 ~~~~  192 (323)
                      ..+.
T Consensus        78 ~~G~   81 (90)
T cd04972          78 PVGQ   81 (90)
T ss_pred             CCCc
Confidence            7433

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.33  E-value=1.6e-11  Score=82.84  Aligned_cols=80  Identities=19%  Similarity=0.370  Sum_probs=61.8

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT  194 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  194 (323)
                      ..+..|+++.|.|.+.|.|   .+.+.|+++|..+...   ..++.  .....|.|.++..+|+|.|+|.| .|..+.  
T Consensus        13 ~~~~~G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~~---~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~--   83 (95)
T cd05730          13 ATANLGQSVTLACDADGFP---EPTMTWTKDGEPIESG---EEKYSFNEDGSEMTILDVDKLDEAEYTCIA-ENKAGE--   83 (95)
T ss_pred             eEEeCCCCEEEEEeccEeC---CCEEEEEECCEECcCC---CCEEEEeCCCCEEEECCCChhhCEEEEEEE-EcCCCe--
Confidence            3477899999999999988   7899999999887651   13333  34457999999999999999999 788543  


Q ss_pred             CceeeeeEEEe
Q psy15235        195 PLAQADFDVIM  205 (323)
Q Consensus       195 ~~~~~~l~v~~  205 (323)
                      ....+.|.|..
T Consensus        84 ~~~~~~L~V~~   94 (95)
T cd05730          84 QEAEIHLKVFA   94 (95)
T ss_pred             EEEEEEEEEEe
Confidence            45566666543

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.33  E-value=9.9e-12  Score=78.74  Aligned_cols=60  Identities=18%  Similarity=0.406  Sum_probs=49.0

Q ss_pred             cEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      .+.|.|.+.|.|   .+.++|+|++..+..    ..++. .....|.|.++..+|+|.|+|.| .|..+
T Consensus         1 ~v~l~C~~~G~P---~p~v~W~k~g~~~~~----~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A-~N~~G   61 (71)
T cd05723           1 DVIFECEVTGKP---TPTVKWVKNGDMVIP----SDYFKIVKEHNLQVLGLVKSDEGFYQCIA-ENDVG   61 (71)
T ss_pred             CEEEEEEEEEeC---CCEEEEEECCeECCC----CCCEEEEecCCEEEEcCCcccCEEEEEEE-EcCCC
Confidence            478999999998   789999999988765    44444 34456889999999999999999 78743

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.33  E-value=2.3e-11  Score=80.49  Aligned_cols=77  Identities=17%  Similarity=0.270  Sum_probs=59.6

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--------eceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNT  193 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  193 (323)
                      |+.++|.|.+.+.|   .+.+.|++++..+...   ..++.        .....|.|.++..+|+|.|+|.| .|..+. 
T Consensus         1 g~~~~l~C~~~g~p---~~~i~W~k~~~~i~~~---~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A-~N~~G~-   72 (88)
T cd05735           1 GQKKEMSCTAHGEK---PIIVRWEKEDRIINPE---MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHA-INSYGE-   72 (88)
T ss_pred             CCeEEEEEEEECCC---CCEEEEeeCCEECCCC---CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEE-EcCCCc-
Confidence            78999999999987   7899999999877541   22332        12267999999999999999999 788544 


Q ss_pred             CCceeeeeEEEecc
Q psy15235        194 TPLAQADFDVIMKP  207 (323)
Q Consensus       194 ~~~~~~~l~v~~~p  207 (323)
                       ....+.|.|..+|
T Consensus        73 -~~~~~~L~V~~~P   85 (88)
T cd05735          73 -DRGIIQLTVQEPP   85 (88)
T ss_pred             -ceEEEEEEEeCCC
Confidence             5667777777655

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.32  E-value=9.7e-12  Score=80.12  Aligned_cols=72  Identities=18%  Similarity=0.492  Sum_probs=54.2

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD  202 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~  202 (323)
                      ++|.|.+.|.|   .+.++|+|+|.++...   ..++.  .....|.|.++..+|+|.|.|.+ .|..+.......+.|.
T Consensus         1 v~L~C~~~g~P---~p~v~W~k~g~~l~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHP---RPTYQWFRDGTPLSDG---QGNYSVSSKERTLTLRSAGPDDSGLYYCCA-HNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecC---CCcEEEEECCEECCCC---CccEEEeCCCCEEEEeeCCcccCEEEEEEE-EeCCCeEeeCceEEEE
Confidence            57999999988   7899999999987551   12222  34468999999999999999999 7875554444555555


Q ss_pred             E
Q psy15235        203 V  203 (323)
Q Consensus       203 v  203 (323)
                      |
T Consensus        74 v   74 (77)
T cd05760          74 I   74 (77)
T ss_pred             E
Confidence            4

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.31  E-value=2e-11  Score=81.52  Aligned_cols=65  Identities=29%  Similarity=0.566  Sum_probs=51.8

Q ss_pred             eCCeEEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCc-CCCeEEEEEEeecccC
Q psy15235        219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATM-ADRGNYYCHGNNVATR  291 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~y~C~a~n~~g~  291 (323)
                      .++.+.|.|.+.|+|.|.++|++++..+... ..++...        ...|.|.++.. +|+|.|+|.|.|..|.
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~--------~~~L~i~~~~~~~d~G~Y~C~a~N~~G~   84 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV--------GGNLVISNPSKAKDAGRYQCLASNIVGT   84 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE--------CCEEEEecCCccCCCEEEEEEEEcCCCE
Confidence            3467999999999999999999999887432 2333332        46789988774 8999999999999975

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.31  E-value=1.7e-11  Score=79.59  Aligned_cols=80  Identities=23%  Similarity=0.331  Sum_probs=59.2

Q ss_pred             CcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235        123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA  197 (323)
Q Consensus       123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  197 (323)
                      +++.|.|.+.+.+.. .+.|.|++||.++... ....++.     .....|.|.+++..|+|.|+|.| .+..  ....+
T Consensus         1 ~~~~l~C~v~~d~~l-~~~~~W~~dg~~i~~~-~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a-~n~~--~~~~a   75 (85)
T cd05853           1 ESIVLPCQVSHDHSL-DIVFTWSFNGHLIDFQ-KDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMV-QTSV--DKLSA   75 (85)
T ss_pred             CcEEEEEEeccCCCC-CcEEEEEECCEECccc-CCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEE-Eccc--CceEE
Confidence            468999999773322 5799999999998631 1123443     13468999999999999999999 7773  44677


Q ss_pred             eeeeEEEecc
Q psy15235        198 QADFDVIMKP  207 (323)
Q Consensus       198 ~~~l~v~~~p  207 (323)
                      +..|.|..||
T Consensus        76 ~a~L~V~~pP   85 (85)
T cd05853          76 AADLIVRGPP   85 (85)
T ss_pred             EEEEEEecCC
Confidence            7788887765

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.30  E-value=2.6e-11  Score=80.99  Aligned_cols=69  Identities=28%  Similarity=0.517  Sum_probs=55.4

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      |....+.+|+.+.|.|.+.+.|   .+.+.||+++..+..    ..++.     .....|.|.++..+|+|.|+|.+ .|
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P---~p~i~W~k~~~~~~~----~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N   79 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNP---DPEVIWFKNDQDIEL----SEHYSVKLEQGKYASLTIKGVTSEDSGKYSINV-KN   79 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeC---CCeEEEEECCEECCC----CCCEEEEEcCCCEEEEEECCCChhhCEEEEEEE-Ee
Confidence            4555678999999999999887   789999999988765    33332     22347999999999999999999 77


Q ss_pred             CC
Q psy15235        189 KS  190 (323)
Q Consensus       189 ~~  190 (323)
                      ..
T Consensus        80 ~~   81 (92)
T cd05891          80 KY   81 (92)
T ss_pred             CC
Confidence            73

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.30  E-value=3.6e-11  Score=80.59  Aligned_cols=84  Identities=20%  Similarity=0.417  Sum_probs=59.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .|....+..|++++|.|.+.|.|+  .+.+.|++ ++..+...   ..++.     .....|.|.+++.+|+|.|+|.| 
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~--~p~i~W~~~~g~~l~~~---~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A-   79 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAK--DKDISWFSPNGEKLTPN---QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVV-   79 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCC--CCEEEEECCCCcCcccc---CCeEEEEeCCCCceEEEEeccChhhCEEEEEEE-
Confidence            455556788999999999999873  36999998 67655431   22332     12468999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEE
Q psy15235        187 DPKSTNTTPLAQADFDV  203 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v  203 (323)
                      .|..+ +...+++.|.|
T Consensus        80 ~N~~~-g~~~~s~~l~v   95 (96)
T cd05865          80 SNEDE-GESEATVNVKI   95 (96)
T ss_pred             EcCCC-CcEEEEEEEEE
Confidence            77631 23444555443

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.30  E-value=3.2e-11  Score=79.16  Aligned_cols=80  Identities=21%  Similarity=0.386  Sum_probs=57.5

Q ss_pred             CcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE---E--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235        123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL---T--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA  197 (323)
Q Consensus       123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  197 (323)
                      +.++|.|.+.+.|.. ...+.|+++|..+.... ...++   .  .....|.|.+++..|+|.|+|.| .|..  +....
T Consensus         1 ~~~~L~C~a~g~P~p-~~~v~W~~~g~~i~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A-~n~~--g~~~~   75 (85)
T cd05854           1 ENLTLQCHASHDPTM-DLTFTWSLDDFPIDLDK-PNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTA-QTVV--DSASA   75 (85)
T ss_pred             CcEEEEEEEecCCCC-CeEEEEEECCeEccccC-CCCcEEEEEecceEeEEEEccCChhhCeEEEEEE-ecCC--CCEEE
Confidence            468999999998731 23789999998875411 11222   1  24568999999999999999999 7774  34566


Q ss_pred             eeeeEEEecc
Q psy15235        198 QADFDVIMKP  207 (323)
Q Consensus       198 ~~~l~v~~~p  207 (323)
                      ++.|.|..+|
T Consensus        76 ~~~L~V~~~P   85 (85)
T cd05854          76 SATLVVRGPP   85 (85)
T ss_pred             EEEEEEECCC
Confidence            6777776554

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.30  E-value=1.4e-11  Score=79.30  Aligned_cols=65  Identities=28%  Similarity=0.437  Sum_probs=49.1

Q ss_pred             EEEEEEEec-CCCCcEEEEECCeeeeccC---CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQ---GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       223 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +.|.|.+.+ .|.+.+.|++++..+....   .++.+.  .  ....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~--~--~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~   69 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR--K--KKKSSELQISKASLADNGEYKCMVSSKLGN   69 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE--e--CCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence            479999864 6778999999998875321   222222  1  113578999999999999999999999966

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.29  E-value=4.6e-11  Score=80.81  Aligned_cols=81  Identities=21%  Similarity=0.403  Sum_probs=58.5

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc-cccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT-ELSGRLT----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      |.+...+.......|+.++|.|.+.|.|   .+.++|++++..+.... ....++.    .....|.|.+++.+|+|.|+
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P---~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~   79 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEASGDP---IPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL   79 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEeeEeC---CCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence            3444444445566689999999999988   78999999887664311 1122332    23368999999999999999


Q ss_pred             EEEEcCCCCC
Q psy15235        183 CRLIDPKSTN  192 (323)
Q Consensus       183 C~~~~~~~~~  192 (323)
                      |.| .|..+.
T Consensus        80 C~A-~N~~G~   88 (97)
T cd05869          80 CTA-SNTIGQ   88 (97)
T ss_pred             EEE-ecCCCC
Confidence            999 788443

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.29  E-value=6.4e-11  Score=79.11  Aligned_cols=73  Identities=21%  Similarity=0.408  Sum_probs=55.3

Q ss_pred             ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec-------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR-------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG  285 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a  285 (323)
                      .+..+.+|+++.|.|.+.+.|.+.+.|++++..+..       .+.++.+..   .......|.|.++..+|.|.|+|.+
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~nV~~~D~G~YtC~~   81 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK---STPTELIISISNVQLSDEGEYTCSI   81 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe---CCCceEEEEECCCCcccCEEEEEEE
Confidence            456788999999999999999999999998764321       123333221   0113578999999999999999999


Q ss_pred             eec
Q psy15235        286 NNV  288 (323)
Q Consensus       286 ~n~  288 (323)
                      ...
T Consensus        82 ~t~   84 (95)
T cd05882          82 FTM   84 (95)
T ss_pred             Eee
Confidence            983

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.29  E-value=2.5e-11  Score=77.73  Aligned_cols=59  Identities=25%  Similarity=0.512  Sum_probs=49.4

Q ss_pred             cEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .+.|.|.+.|.|   .+.+.|+++|..+..    ..++.    .....|.|.++..+|+|.|+|.| .|..
T Consensus         1 ~~~l~c~~~G~P---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~   63 (74)
T cd05748           1 SVRLEVPISGRP---TPTVTWSKDGKPLKL----SGRVQIETTASSTSLVIKNAERSDSGKYTLTL-KNPA   63 (74)
T ss_pred             CEEEEeeEeeeC---CCeEEEEECCEEcCC----CCeEEEEECCCeEEEEECCCCcCcCEEEEEEE-ECCC
Confidence            478999999999   789999999998855    34443    34678999999999999999999 7874

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.29  E-value=2.6e-11  Score=80.05  Aligned_cols=79  Identities=14%  Similarity=0.356  Sum_probs=57.1

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC-cEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTP  195 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  195 (323)
                      ..+..|+.+.|.|.+.+.|   .+.+.|+|+|..+........ +.......|.|.++..+|+|.|+|.+ .|..+.  .
T Consensus         4 ~~v~~G~~~~L~C~~~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a-~N~~G~--~   77 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNP---TPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV-ENEYGS--I   77 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCC---CCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEE-EeCCCE--E
Confidence            3467899999999999987   789999999998865111100 11133457899999999999999999 777433  3


Q ss_pred             ceeeee
Q psy15235        196 LAQADF  201 (323)
Q Consensus       196 ~~~~~l  201 (323)
                      ..++.|
T Consensus        78 ~~~~~l   83 (85)
T cd05857          78 NHTYHL   83 (85)
T ss_pred             EEEEEE
Confidence            444444

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.29  E-value=1.2e-11  Score=77.94  Aligned_cols=60  Identities=27%  Similarity=0.563  Sum_probs=50.0

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      |.|.|.+.|.|   .+.+.|+|++..+..    ..++. .....|.|.++..+|+|.|+|.+ .|..+.
T Consensus         1 v~L~C~~~g~P---~p~i~W~k~g~~~~~----~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G~   61 (69)
T cd05746           1 VQIPCSAQGDP---EPTITWNKDGVQVTE----SGKFHISPEGYLAIRDVGVADQGRYECVA-RNTIGY   61 (69)
T ss_pred             CEeEecceEeC---CCEEEEEECCEECCC----CCCEEECCCCEEEECcCChhhCEEEEEEE-ECCCCc
Confidence            57999999988   789999999988865    45554 44678999999999999999999 787433

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.28  E-value=1.7e-11  Score=78.71  Aligned_cols=75  Identities=23%  Similarity=0.282  Sum_probs=54.8

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF  201 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l  201 (323)
                      |+.+.|.|.+.|.|   .|+|+|+++|.++..... ..........|.|.+++.+|+|.|+|.| .|..+.  ...++.|
T Consensus         1 g~~~~l~C~a~G~P---~P~i~W~k~g~~i~~~~~-~~~~~~~~~~l~i~~v~~~D~G~Y~C~A-~N~~G~--~~~~~~l   73 (76)
T cd05868           1 GEDGTLICRANGNP---KPSISWLTNGVPIEIAPT-DPSRKVDGDTIIFSKVQERSSAVYQCNA-SNEYGY--LLANAFV   73 (76)
T ss_pred             CCCEEEEEEeeEeC---CCeEEEEECCEEccccCC-CceEEecCCEEEECCCCHhhCEEEEEEE-EcCCCE--EEEEEEE
Confidence            67899999999998   799999999998854111 1111233457899999999999999999 787433  4444444


Q ss_pred             EE
Q psy15235        202 DV  203 (323)
Q Consensus       202 ~v  203 (323)
                      .|
T Consensus        74 ~v   75 (76)
T cd05868          74 NV   75 (76)
T ss_pred             Ee
Confidence            44

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.27  E-value=2.8e-11  Score=79.80  Aligned_cols=76  Identities=25%  Similarity=0.419  Sum_probs=58.4

Q ss_pred             eceeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        212 VETLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      +....+.+|+.++|.|.+.+ .|.+.+.|++++..+..   +.. .       ....|.|.+++.+|+|.|+|.|.|..|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~---~~~-~-------~~~~L~I~~v~~~DsG~Y~C~a~n~~g   76 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS---RAM-D-------FNGILTIRNVQLSDAGTYVCTGSNMLD   76 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC---ccc-c-------cCCEEEECCCCHHHCEEEEEEEeccCC
Confidence            44556788999999999964 68889999998865421   111 1       256899999999999999999999996


Q ss_pred             CCCCCceeEEEE
Q psy15235        291 RNSQPNEAFVYV  302 (323)
Q Consensus       291 ~~~~~~~~~~~l  302 (323)
                      .    ....+.|
T Consensus        77 ~----~~~~~~l   84 (85)
T cd05754          77 T----DEATATL   84 (85)
T ss_pred             e----EeEEEEE
Confidence            5    5555544

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.27  E-value=2.7e-11  Score=78.12  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=56.1

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF  201 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l  201 (323)
                      |+.+.|.|.+.+.|   .+.|.|+++|..+...... .+.......|.|.+++.+|+|.|+|.| .|..+.  ....+.|
T Consensus         1 G~~~~l~C~~~g~P---~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A-~N~~G~--~~~~~~l   73 (76)
T cd04978           1 GETGRLDCEAEGIP---QPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNA-SNVHGY--LLANAFV   73 (76)
T ss_pred             CCeEEEEEEceeeC---CCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEE-EccCCe--EEEeEEE
Confidence            68899999999988   7899999999888652111 122355678999999999999999999 777433  4444444


Q ss_pred             EE
Q psy15235        202 DV  203 (323)
Q Consensus       202 ~v  203 (323)
                      .|
T Consensus        74 ~V   75 (76)
T cd04978          74 HV   75 (76)
T ss_pred             EE
Confidence            44

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.27  E-value=6.1e-11  Score=75.52  Aligned_cols=78  Identities=17%  Similarity=0.261  Sum_probs=55.9

Q ss_pred             EEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        223 LRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       223 ~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                      ++|+|.. .++|++.++||+++..+.....  . ..........++|.|.....+|.+.|+|.|.|..+. .+..+....
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~--~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~-~~~~~~~~~   77 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS--Q-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV-SQKKQTQYS   77 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc--c-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC-CCCeeEEEE
Confidence            6899999 5679999999999999853210  0 000111124578999999999999999999999987 244566666


Q ss_pred             EEE
Q psy15235        302 VRV  304 (323)
Q Consensus       302 l~v  304 (323)
                      |.|
T Consensus        78 l~V   80 (80)
T cd05885          78 LDV   80 (80)
T ss_pred             EeC
Confidence            543

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.27  E-value=2e-11  Score=80.73  Aligned_cols=72  Identities=28%  Similarity=0.413  Sum_probs=56.7

Q ss_pred             eeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeee-ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        214 TLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYF-RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...+.+|+.+.|.|.. .|.|.+.+.|++++..+. ..+.+..+..      ..+.|.|.+++.+|+|+|+|.|.|....
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~------~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ------TNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC------CCCcEEEeecCHhhCceeEEEEEecccC
Confidence            3567889999999988 788999999999987532 1223333331      3688999999999999999999998744

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.27  E-value=3.9e-11  Score=75.24  Aligned_cols=60  Identities=15%  Similarity=0.387  Sum_probs=47.9

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      |+.++|.|.+.|.|   .|.|.|+|++.++..    ..++......|.|.++  .|+|.|+|.| .|..+
T Consensus         1 G~~v~L~C~a~G~P---~P~v~W~k~g~~l~~----~~~~~~~~~~L~i~~~--~d~G~Y~C~A-~N~~G   60 (69)
T cd05739           1 GGSVNLTCVAVGAP---MPYVKWMKGGEELTK----EDEMPVGRNVLELTNI--YESANYTCVA-ISSLG   60 (69)
T ss_pred             CCeEEEEEEeeecC---CCEEEEEECCEECCC----ccceecCccEEEEecc--ccCeeEEEEE-EeCCC
Confidence            67899999999998   899999999988765    3344434457888887  4789999999 77743

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.26  E-value=3e-11  Score=80.70  Aligned_cols=71  Identities=24%  Similarity=0.473  Sum_probs=53.7

Q ss_pred             eeEEecCCcEEEEEEeec-----CCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        116 YKVFEYRVPFTLKCNVTS-----PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~-----~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ...+.+|+++.|.|.+.+     .|   .+.|.|||++..+........++......|.|.++..+|+|.|+|.+ .|..
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p---~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~-~N~~   83 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSP---GLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVV-RNST   83 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCC---CceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEE-cCCC
Confidence            345678999999999988     45   67999999987643211113444444568999999999999999999 7774

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.26  E-value=2.6e-11  Score=77.36  Aligned_cols=61  Identities=31%  Similarity=0.509  Sum_probs=48.0

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--e---ceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--Q---SKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~---~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      |.|.|.+.|.|   .|.|.|+|++..+...   ..++.  .   ....|.|.++..+|+|.|+|.| .|..+.
T Consensus         1 v~l~C~v~G~P---~P~v~W~k~~~~l~~~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~N~~G~   66 (75)
T cd05893           1 VRLECRVSGVP---HPQIFWKKENESLTHN---TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA-KNEAGI   66 (75)
T ss_pred             CEEEEEEeEec---CCEEEEEECCEECCCC---CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEE-EcCCCE
Confidence            57999999999   8999999999888641   23443  1   1236999999999999999999 787443

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.26  E-value=9.1e-11  Score=78.34  Aligned_cols=81  Identities=19%  Similarity=0.430  Sum_probs=58.3

Q ss_pred             eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEE
Q psy15235        112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       112 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      +.|....+..|+++.|.|.+.|.|   . .+.|++ ++..+..    ..++.     .....|+|.+++.+|+|.|+|.|
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p---~-~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   76 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEP---K-DISWFSPNGEKLVT----QQQISVVQNDDVRSTLTIYNANIEDAGIYKCVA   76 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeC---C-eEEEECCCCCEecc----CCCEEEEeCCCCEEEEEEecCCcccCEEEEEEE
Confidence            455556688899999999999986   4 899998 5655543    22322     23468999999999999999999


Q ss_pred             EcCCCCCCCCceeeeeE
Q psy15235        186 IDPKSTNTTPLAQADFD  202 (323)
Q Consensus       186 ~~~~~~~~~~~~~~~l~  202 (323)
                       .|..+. ....++.|+
T Consensus        77 -~N~~g~-~~~~sv~l~   91 (92)
T cd04977          77 -TDAKGT-ESEATVNLK   91 (92)
T ss_pred             -EcCCCC-cceeEEEEE
Confidence             776333 234444443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.26  E-value=1.2e-10  Score=77.01  Aligned_cols=88  Identities=22%  Similarity=0.215  Sum_probs=67.4

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCc-EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      ...+.+|+.+.|.|.+.++|+|+ +.|.+++..+.+............+....+.|.+..++.+|.|.|+|.|.|..+. 
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~-   90 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS-   90 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe-
Confidence            45688999999999999999997 9999988776543332211111122346799999999999999999999999944 


Q ss_pred             CCCceeEEEEEEc
Q psy15235        293 SQPNEAFVYVRVK  305 (323)
Q Consensus       293 ~~~~~~~~~l~v~  305 (323)
                         .+.++.|.|+
T Consensus        91 ---~s~tF~l~v~  100 (101)
T cd05860          91 ---ASVTFNVYVN  100 (101)
T ss_pred             ---EEEEEEEEEe
Confidence               7777777764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.25  E-value=5.6e-11  Score=78.31  Aligned_cols=80  Identities=25%  Similarity=0.441  Sum_probs=57.0

Q ss_pred             CcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235        123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA  197 (323)
Q Consensus       123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  197 (323)
                      +++.|.|.+.+.|.. ...+.|+++|..+..... ..++.     .....|.|.+++.+|+|.|+|.+ .|..+  ....
T Consensus         1 e~~~L~C~~~g~P~p-~i~~~W~~~g~~i~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~g--~~~~   75 (85)
T cd04970           1 ESITLQCHASHDPTL-DLTFTWSFNGVPIDFDKD-GGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTA-QTVVD--SLSA   75 (85)
T ss_pred             CcEEEEEEEecCCCC-CeEEEEEECCeEeeccCC-CccEEEEecccccceEEEccCCHHhCeeeEEEE-ecCCC--cEEE
Confidence            468999999988721 237899999988754111 11111     34678999999999999999999 77643  3566


Q ss_pred             eeeeEEEecc
Q psy15235        198 QADFDVIMKP  207 (323)
Q Consensus       198 ~~~l~v~~~p  207 (323)
                      ...|.|..+|
T Consensus        76 ~~~l~V~~pP   85 (85)
T cd04970          76 SADLIVRGPP   85 (85)
T ss_pred             EEEEEEECCC
Confidence            7777777654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.25  E-value=4.7e-11  Score=76.37  Aligned_cols=61  Identities=26%  Similarity=0.461  Sum_probs=48.0

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      +.|.|.+.|.|   .|.+.|+|++..+...   ..++.     .....|.|.+++.+|+|.|+|.+ .|..+.
T Consensus         1 v~L~C~v~G~P---~P~v~W~k~~~~i~~~---~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G~   66 (75)
T cd05744           1 VRLECRVSAIP---PPQIFWKKNNEMLTYN---TDRISLYQDNCGRICLLIQNANKEDAGWYTVSA-VNEAGV   66 (75)
T ss_pred             CEEEEEEeecC---CCeEEEEECCEECCCC---CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE-EcCCCc
Confidence            47999999999   7999999999888641   23333     12236999999999999999999 787443

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.24  E-value=3.5e-11  Score=76.20  Aligned_cols=70  Identities=13%  Similarity=0.349  Sum_probs=51.7

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      +.|.|.+.|.|   .|.+.|++++..+...   ..........|.|.+++.+|+|.|+|.| .|..+.  ....+.|.|
T Consensus         1 ~~L~C~~~G~P---~P~v~W~k~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~--~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLP---TPEVHWDRIDGPLSPN---RTKKLNNNKTLQLDNVLESDDGEYVCTA-ENSEGS--ARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEec---CCeEEEEECCcCCCCC---ceeEEcCCCEEEEcccCHHhCEEEEEEE-EcCCCe--EEEEEEEEE
Confidence            47899999998   7899999998776541   1122245678999999999999999999 787443  334444443

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>KOG3515|consensus

Probab=99.24  E-value=1e-10  Score=103.26  Aligned_cols=271  Identities=17%  Similarity=0.206  Sum_probs=156.9

Q ss_pred             ceEEecCCcEEEEEE----eccCceEEEEEcCccceeecc-----CcceEEEeeeeCCeEEEEEeecccCcceEEEeecc
Q psy15235         30 DTEIMEGAPINISCI----LTIFEQVKWQLNGRNINQSSV-----DSGFAATANLTEDNFKYSIHEAILESGYVQSSLFI  100 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~----~~~~~~v~W~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~  100 (323)
                      .....++..+.+.|.    +.+.+.++|..++........     ..............+++...+..+.|.|+|.+.+.
T Consensus       106 e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  106 EIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR  185 (741)
T ss_pred             chhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence            455678999999995    345689999997643322210     00000011122445566666666699999999874


Q ss_pred             C---Cccceeeeeee-----------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--ec
Q psy15235        101 P---RMNAITGNYDI-----------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QS  164 (323)
Q Consensus       101 ~---~~~~~~~~~~~-----------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~  164 (323)
                      .   ........+.+           ....+.+.+|+.+.|.|.+.+..|  ...+.|+++............+-.  .-
T Consensus       186 ~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P--~~~~~w~~~s~~~~~~sl~~~~~sg~~v  263 (741)
T KOG3515|consen  186 NSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNP--SQQQTWYKDSRPQSESSLLSQEPSGDTV  263 (741)
T ss_pred             cCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCc--chhhhhccccccchhhhcccCCCCCCcc
Confidence            2   22111111111           122244778999999998877766  689999999877655100111111  11


Q ss_pred             eeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee--eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEE
Q psy15235        165 KDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK--LVETLTVIEGEKLRLECLV-VGSPPPTVEWRI  241 (323)
Q Consensus       165 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~  241 (323)
                      ...+.+..-..++.-...|.+ .|.     ......+.+..+|.-.  .+.......|++..+.|.. .++|.+.+.|++
T Consensus       264 ~~~~~~~~~r~~~~~~~kc~a-~n~-----~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~  337 (741)
T KOG3515|consen  264 SSTLVLRVGRQDLQAQLKCKA-SNL-----LAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYK  337 (741)
T ss_pred             cccccccccccchhhhhhccc-cCc-----cccceeeecccccccccccCcccccccccccccceeccCCCCccceeeec
Confidence            222333333333444678999 662     2223334444443222  2233447789999999998 456888999999


Q ss_pred             CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      +............-. ..........+.+......|.|.|+|.|.|....  .+....+.|.+..+|..+
T Consensus       338 ~~~~~~~~~~~~~~t-~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~--~~sss~~~l~~l~~p~~L  404 (741)
T KOG3515|consen  338 DTKMPKGSQKASSKT-SNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA--HSSSSSFLLPVLPSPAFL  404 (741)
T ss_pred             cCcccccccCcccCC-CcccceeeEEeeecccchhcCceEEccccccccc--cccccceeccccCCchhh
Confidence            665544222211111 1222233455666678888999999999998866  556666677666665543

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.24  E-value=4.8e-11  Score=78.23  Aligned_cols=65  Identities=23%  Similarity=0.492  Sum_probs=52.2

Q ss_pred             EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ....|+.+.|.|.+.+.|   .+.+.|++++..+..    .....  .....|.|.++..+|+|.|+|.+ .|..
T Consensus         5 ~~~~G~~v~L~C~~~g~p---~p~i~W~k~~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N~~   71 (82)
T cd05856           5 ARPVGSSVRLKCVASGNP---RPDITWLKDNKPLTP----TEIGESRKKKWTLSLKNLKPEDSGKYTCHV-SNRA   71 (82)
T ss_pred             eccCCCeEEEEEEeeEeC---CCcEEEEECCcCCcC----CccceecCceEEEEEccCChhhCEEEEEEE-EcCC
Confidence            356799999999999988   689999999987754    22221  34468999999999999999999 7773

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.23  E-value=6.1e-11  Score=75.81  Aligned_cols=62  Identities=11%  Similarity=0.291  Sum_probs=47.3

Q ss_pred             EEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       127 l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      |.|.+.|.|   .|+|+|+|+|.++........++.     .....|.|.++..+|+|.|+|.| .|..|.
T Consensus         3 i~~~v~G~P---~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A-~N~~G~   69 (79)
T cd05855           3 IPFTVKGNP---KPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVA-KNEYGE   69 (79)
T ss_pred             EEEEEeEeC---CCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEE-EcCCcc
Confidence            789999999   899999999999976211111111     23467999999999999999999 788543

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.23  E-value=1.4e-10  Score=75.57  Aligned_cols=79  Identities=32%  Similarity=0.520  Sum_probs=60.1

Q ss_pred             ceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEe
Q psy15235        207 PTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN  286 (323)
Q Consensus       207 p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~  286 (323)
                      |.+..+. ..+.+|+.+.|.|.+.+.|.+.+.|++++..+...               ...+.+.++..+|.|.|+|.|.
T Consensus         2 P~l~~~~-~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~---------------~~~~~~~~~~~~~~g~y~C~~~   65 (80)
T PF13895_consen    2 PVLSSSP-QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS---------------QNGLFIPNVSPEDSGNYTCRAS   65 (80)
T ss_dssp             -EEEEES-SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE---------------SSEEEESSEEGGGTEEEEEEEE
T ss_pred             cEEEccc-eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee---------------eeeeeeeeeccccCEEEEEEEE
Confidence            5555444 56889999999999999888999999998777522               1227778899999999999999


Q ss_pred             ecccCCCCCceeEEEEEE
Q psy15235        287 NVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       287 n~~g~~~~~~~~~~~l~v  304 (323)
                      +..+.   ..+..+.|.|
T Consensus        66 ~~~~~---~~s~~~~v~V   80 (80)
T PF13895_consen   66 NGSGS---NTSTSVNVTV   80 (80)
T ss_dssp             ETTEE---EEEEEEEEEE
T ss_pred             eCCCC---eEeeeEEeeC
Confidence            96532   3556666654

...

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.23  E-value=6e-11  Score=77.41  Aligned_cols=65  Identities=32%  Similarity=0.403  Sum_probs=53.2

Q ss_pred             eeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        214 TLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...+.+|++++|.|.+. +.+.+.+.|++++..+...      .       ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------~-------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------H-------SNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------C-------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence            44688999999999995 4566789999999765311      0       2578999999999999999999999976

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.23  E-value=8.1e-11  Score=78.44  Aligned_cols=78  Identities=23%  Similarity=0.355  Sum_probs=57.0

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeecccc----ccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCc
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA----TELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL  196 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~----~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  196 (323)
                      |+.++|.|.+.+.|   .+.+.|++++..+...    .....++. .....|.|.+++.+|+|.|+|.+ .|..+.  ..
T Consensus         1 G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~--~~   74 (90)
T cd05726           1 GRTVTFQCEATGNP---QPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQT-LNVAGS--IL   74 (90)
T ss_pred             CCEEEEEEECCccC---CCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEE-EcCCCc--eE
Confidence            68899999999988   7899999988643210    01134554 34568999999999999999999 787443  45


Q ss_pred             eeeeeEEEe
Q psy15235        197 AQADFDVIM  205 (323)
Q Consensus       197 ~~~~l~v~~  205 (323)
                      ..+.|.|..
T Consensus        75 ~~~~l~V~~   83 (90)
T cd05726          75 TKAYLEVTD   83 (90)
T ss_pred             EEEEEEEee
Confidence            556666654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.23  E-value=6.3e-11  Score=75.70  Aligned_cols=72  Identities=24%  Similarity=0.473  Sum_probs=52.6

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      ++|.|.+.|.|   .+.|.|++++.++..  ....++. .....|.|.+++.+|+|.|+|.+ .|..+. ..+..+.|.|
T Consensus         1 a~l~C~~~G~P---~p~v~W~k~~~~~~~--~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a-~N~~G~-~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNP---DPEITWFKDFLPVDT--TSNGRIKQLRSGALQIENSEESDQGKYECVA-TNSAGT-RYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEec---CCEEEEEECCEECcc--CCCCCEEEcCCcEEEECCCChhhCEEEEEEE-ECCCCc-eEcccEEEEE
Confidence            47999999998   799999999987753  1134554 44567999999999999999999 677443 2233444433

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.23  E-value=1.2e-10  Score=77.47  Aligned_cols=80  Identities=21%  Similarity=0.358  Sum_probs=59.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .+....+.+|++++|.|.+.+. +   +.|.|++++..+..     .++.  .....|.|.+++.+|+|.|.|.| .|..
T Consensus         9 ~~~~~~v~~g~~v~l~C~a~g~-~---p~i~W~kng~~l~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~   78 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEAEGQ-A---TYIWWVNNGSLLVP-----PRLQLSNDNRTLTFNNVTRSDTGHYQCEA-SNEV   78 (91)
T ss_pred             ccCccccccCCcEEEEEEeCCC-C---CEEEEEECCEECCC-----CCEEEeCCCCEEEECcCChhhCEEEEEEE-EcCC
Confidence            3444568889999999999987 3   68999999988754     2333  34568999999999999999999 7774


Q ss_pred             CCCCCceeeeeEE
Q psy15235        191 TNTTPLAQADFDV  203 (323)
Q Consensus       191 ~~~~~~~~~~l~v  203 (323)
                      +. ..+..+.|.|
T Consensus        79 G~-~~S~~~~L~V   90 (91)
T cd05740          79 SN-MTSDPYILNV   90 (91)
T ss_pred             CC-EEeeeEEEEe
Confidence            33 2333444443

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.22  E-value=5.2e-11  Score=75.05  Aligned_cols=58  Identities=26%  Similarity=0.584  Sum_probs=46.9

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      ++|.|.+.|.|   .+.+.|++++..+..     .++. .....|.|.+++.+|+|.|+|.+ .|..+
T Consensus         1 v~l~C~~~g~P---~p~v~W~k~~~~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G   59 (69)
T cd05725           1 VEFQCEVGGDP---VPTVLWRKEDGELPK-----GRAEILDDKSLKIRNVTAGDEGSYTCEA-ENMVG   59 (69)
T ss_pred             CEEEEECccCC---CCEEEEEECCccCCC-----CcEEEeeCCEEEECcCChhHCEEEEEEE-EcCCC
Confidence            47999999988   789999999876643     3333 45568999999999999999999 77743

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.21  E-value=1.4e-10  Score=76.71  Aligned_cols=72  Identities=17%  Similarity=0.342  Sum_probs=56.2

Q ss_pred             CceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        114 PKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      |....+.+|+++.|.|.+ .+.|   .+.+.|++++..+...   ..++. .....|.|.+++.+|+|.|+|.+ .|..+
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p---~p~i~W~k~g~~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G   75 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHP---EPTVSWRKDGQPLNLD---NERVRIVDDGNLLIAEARKSDEGTYKCVA-TNMVG   75 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCC---CCEEEEEECCEECCCC---CCCEEEccCCEEEEeECCcccCEEEEEEE-EeccC
Confidence            455667789999999998 5666   7899999999887651   22333 33568999999999999999999 77643


Q ss_pred             C
Q psy15235        192 N  192 (323)
Q Consensus       192 ~  192 (323)
                      .
T Consensus        76 ~   76 (86)
T cd05724          76 E   76 (86)
T ss_pred             c
Confidence            3

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.21  E-value=1.6e-10  Score=77.55  Aligned_cols=77  Identities=22%  Similarity=0.364  Sum_probs=56.7

Q ss_pred             eeeeCCceeEEecC---CcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeee-cCCCeeEEEE
Q psy15235        109 NYDIEPKYKVFEYR---VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT-VDDAGQYSCR  184 (323)
Q Consensus       109 ~~~~~~~~~~~~~g---~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~  184 (323)
                      .+...|....+.+|   +.++|.|.+.+.|   .+.|+|+++|..+...  ...++......|.|.++. ..|+|.|+|.
T Consensus         3 ~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P---~p~i~W~~~g~~l~~~--~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~   77 (94)
T cd05850           3 VFEEQPSSLLFPEGSPEEKVTLGCRARASP---PATYRWKMNGTEIKFA--PESRYTLVAGNLVINNPQKARDAGSYQCL   77 (94)
T ss_pred             eeEECCCCEEecCCCCCCeEEEEeEceeCC---CCEEEEEECCEECccC--CCceEEEECCeEEEccCCccCcCEEEEEE
Confidence            34446666665555   5799999999988   7899999999988641  123444445678888765 5899999999


Q ss_pred             EEcCCCC
Q psy15235        185 LIDPKST  191 (323)
Q Consensus       185 ~~~~~~~  191 (323)
                      | .|..+
T Consensus        78 A-~N~~G   83 (94)
T cd05850          78 A-INRCG   83 (94)
T ss_pred             E-EcCcC
Confidence            9 77744

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.21  E-value=1.2e-10  Score=74.55  Aligned_cols=62  Identities=27%  Similarity=0.480  Sum_probs=49.2

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      |+.+.|.|.+.+.|   .+.+.|++ ++..+..    ..+.. .....|.|.++..+|.|.|+|.+ .|..+
T Consensus         1 G~~~~l~C~~~g~P---~p~v~W~~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a-~N~~G   64 (74)
T cd05764           1 GQRATLRCKARGDP---EPAIHWISPDGKLISN----SSRTLVYDNGTLDILITTVKDTGSFTCIA-SNAAG   64 (74)
T ss_pred             CCeEEEEEEccCcC---CCEEEEEeCCCEEecC----CCeEEEecCCEEEEEECChhhCEEEEEEE-ECCCC
Confidence            68899999999987   78999997 5665544    33333 44568999999999999999999 78743

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.21  E-value=5.1e-11  Score=78.61  Aligned_cols=70  Identities=20%  Similarity=0.360  Sum_probs=59.3

Q ss_pred             eeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe-EEEEEEeeccc
Q psy15235        214 TLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVAT  290 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~g  290 (323)
                      ...+.+|+.+.|.|.. .|+|.|.+.|+.++......+.|+.+.       ..+.|.|.+++.+|+| .|.|.|.|...
T Consensus        12 ~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~-------~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          12 PVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG-------QNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             eeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC-------CCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            4678899999999984 999999999998776544456677666       4789999999999999 79999999873

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.21  E-value=1.6e-10  Score=77.40  Aligned_cols=65  Identities=18%  Similarity=0.358  Sum_probs=50.9

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeee-cCCCeeEEEEEEcCCCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT-VDDAGQYSCRLIDPKST  191 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~  191 (323)
                      +|+.++|.|.+.|.|   .+.|+|+++|..+...  ...++......|.|.++. .+|+|.|+|.| .|..+
T Consensus        18 ~g~~v~l~C~~~G~P---~P~i~W~k~g~~l~~~--~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A-~N~~G   83 (94)
T cd05848          18 DEKKVILNCEARGNP---VPTYRWLRNGTEIDTE--SDYRYSLIDGNLIISNPSEVKDSGRYQCLA-TNSIG   83 (94)
T ss_pred             CCCEEEEEEEeeecC---CCEEEEEECCeECccC--CCceEEeeCCeEEEccCCccCcCEEEEEEE-EcCCC
Confidence            478999999999998   7899999999988641  122344345678888874 68999999999 77754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.20  E-value=1.3e-10  Score=76.32  Aligned_cols=81  Identities=25%  Similarity=0.345  Sum_probs=55.6

Q ss_pred             CCeEEEEEEEecCCC--CcEEEEECCeeeeccC--CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235        220 GEKLRLECLVVGSPP--PTVEWRIGNDTYFRSQ--GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP  295 (323)
Q Consensus       220 g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~  295 (323)
                      |+++.|.|.+.+.+.  ..+.|.+++.......  ....... .......++|+|.+++.+|+|.|+|.|.|..|.    
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~-~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~----   75 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSL-QEHTELSSTLTIENVTLSDLGRYTCTASSGQMI----   75 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccc-cccceeeeEEEEecCCcccCEEEEEEEeecceE----
Confidence            789999999987654  4789998776432110  1000000 011124689999999999999999999998865    


Q ss_pred             ceeEEEEEEc
Q psy15235        296 NEAFVYVRVK  305 (323)
Q Consensus       296 ~~~~~~l~v~  305 (323)
                      ......|.|.
T Consensus        76 ~~~~t~~~V~   85 (86)
T cd05862          76 AKNSTIVIVH   85 (86)
T ss_pred             ecccEEEEEe
Confidence            6666677664

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.20  E-value=2.8e-10  Score=76.29  Aligned_cols=75  Identities=21%  Similarity=0.425  Sum_probs=55.1

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee-------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF-------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +.+..+.+|+++.|.|.+.+.|.+.+.|++.+..+.       ..++++....  . .....+|+|.+++.+|+|.|+|.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~--~-~~~~~sL~I~~v~~~DsG~Y~C~   80 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR--A-SWHELSISISDVSLSDEGQYTCS   80 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEE--C-CCCcEEEEECcCCcccCEEEEEE
Confidence            346778999999999999999999999986432211       1234444321  1 11357899999999999999999


Q ss_pred             Eeecc
Q psy15235        285 GNNVA  289 (323)
Q Consensus       285 a~n~~  289 (323)
                      +.+..
T Consensus        81 ~~t~~   85 (95)
T cd07701          81 LFTMP   85 (95)
T ss_pred             eEeec
Confidence            99854

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.20  E-value=4.3e-10  Score=76.23  Aligned_cols=88  Identities=9%  Similarity=0.084  Sum_probs=56.9

Q ss_pred             ceEEEeeceEEecCCcEEEEEE--eccCceEEEEEc--CccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCI--LTIFEQVKWQLN--GRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQS   96 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~   96 (323)
                      +.+..+.++.+.+|++++|.|.  +.|.|.+.|+++  +..+..........+......+...|.|.+++  |+|.|+|.
T Consensus         3 p~i~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   82 (98)
T cd05870           3 PHIIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCE   82 (98)
T ss_pred             CEEEeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEE
Confidence            3566677889999999999999  456789999994  33332211111112222333344566666665  49999999


Q ss_pred             eeccCCccceeeee
Q psy15235         97 SLFIPRMNAITGNY  110 (323)
Q Consensus        97 ~~~~~~~~~~~~~~  110 (323)
                      +.|..+.......+
T Consensus        83 A~N~~G~~~~~~~l   96 (98)
T cd05870          83 AASRIGGHQKSMYL   96 (98)
T ss_pred             EeccCCcceeEEEE
Confidence            99988876544433

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.19  E-value=9.3e-11  Score=77.63  Aligned_cols=85  Identities=12%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             eEEeeCCeEEEEEEE-ecC----CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        215 LTVIEGEKLRLECLV-VGS----PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~-~g~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ..+..|.+..|.|.- .++    +.+++.||+|+..+.....++....      ....|.|.++..+|+|.|+|.|.+..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~------~~~~L~I~~v~~~D~G~YtC~~~~~~   78 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK------GSTYLHIIDVSLNDSGYYTCKLQFTH   78 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC------CCCEEEEEEcChhhCEEEEEEEEEee
Confidence            345678899999974 333    5678999999998865544444321      24579999999999999999999997


Q ss_pred             cCCCCCceeEEEEEEc
Q psy15235        290 TRNSQPNEAFVYVRVK  305 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~  305 (323)
                      |...-...+.+.|.|.
T Consensus        79 ~g~~y~vtr~~~l~v~   94 (95)
T cd05897          79 EGKKYNITRIIKLRIV   94 (95)
T ss_pred             CCEEEEEEEEEEEEEc
Confidence            5533345555565543

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.19  E-value=1.7e-10  Score=71.30  Aligned_cols=63  Identities=27%  Similarity=0.536  Sum_probs=50.7

Q ss_pred             eCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      +|+++.|.|.+.+.|.+.+.|++++..+. . ......       ....|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~-~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-E-SNRLSA-------SGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC-C-CCEEec-------CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            47899999999888889999999988775 1 111111       367899999999999999999998763

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.19  E-value=3.4e-10  Score=76.54  Aligned_cols=87  Identities=13%  Similarity=0.109  Sum_probs=58.1

Q ss_pred             ceEEEeeceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEee
Q psy15235         23 GKITYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSL   98 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~   98 (323)
                      +.|.......+.+|+++.|.|.  +.|.+.+.|++++..+..........+..........|.|.+++  |+|.|+|.+.
T Consensus         3 P~i~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   82 (96)
T cd05732           3 PKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEAS   82 (96)
T ss_pred             ccceecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEE
Confidence            4455566788999999999999  45678999999886554321111111222223344567777665  4999999999


Q ss_pred             ccCCccceeee
Q psy15235         99 FIPRMNAITGN  109 (323)
Q Consensus        99 ~~~~~~~~~~~  109 (323)
                      |..+.......
T Consensus        83 N~~G~~~~s~~   93 (96)
T cd05732          83 NRIGGDQQSMY   93 (96)
T ss_pred             eCCCCcEEEEE
Confidence            98887654443

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.19  E-value=1.2e-10  Score=75.35  Aligned_cols=59  Identities=15%  Similarity=0.334  Sum_probs=47.0

Q ss_pred             EEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----------eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----------QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       126 ~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      .|.|.+.|.|   .|.|+|+|+|..+..    ..+..           .....|.|.+++.+|+|.|+|.| .|..|.
T Consensus         2 ~i~~~v~G~P---~P~v~W~k~g~~i~~----~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A-~N~~G~   71 (81)
T cd04971           2 CIPFTVRGNP---KPTLTWYHNGAVLNE----SDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVA-SNEYGQ   71 (81)
T ss_pred             eEEEEeEeeC---CCcEEEEECCEECcC----CCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEE-EeCCCC
Confidence            3789999999   799999999999876    22211           12457999999999999999999 787443

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.18  E-value=2.7e-10  Score=74.61  Aligned_cols=79  Identities=18%  Similarity=0.359  Sum_probs=55.2

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA  197 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  197 (323)
                      |++++|.|.+.+.+   .+.+.|+++++..........+..    .....|.|.+++.+|+|.|.|.+ .+.........
T Consensus         1 Ge~~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a-~n~~~~~~~~~   76 (84)
T cd05861           1 GETITVNCIVQGNE---VVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAA-HESTQDQKAFK   76 (84)
T ss_pred             CCcEEEEEEEECCC---ccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEE-EECccCcceeE
Confidence            78999999999977   789999987654322000001111    33578999999999999999999 66543335566


Q ss_pred             eeeeEEE
Q psy15235        198 QADFDVI  204 (323)
Q Consensus       198 ~~~l~v~  204 (323)
                      ++.|+|.
T Consensus        77 sv~i~V~   83 (84)
T cd05861          77 KVNITVH   83 (84)
T ss_pred             EEEEEEe
Confidence            6676664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.17  E-value=3.3e-10  Score=73.82  Aligned_cols=67  Identities=27%  Similarity=0.488  Sum_probs=54.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      +|+...+..|+++.|.|.+.+ +   .++|.|+++|.++...   ..++......|.|.+++.+|+|.|+|.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~---~~~i~W~~ng~~i~~~---~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~   68 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-N---LARVVWKFDGKVLTPE---SAKYLLYRDGLLIFNASEADAGRYQCLSV   68 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-C---CCeEEEEECCEECCCC---CceEEEECCcEEEeCCCHHHCEEEEEEEE
Confidence            356667889999999999754 4   5799999999998761   14555455679999999999999999994

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.17  E-value=1.7e-10  Score=74.06  Aligned_cols=72  Identities=28%  Similarity=0.431  Sum_probs=50.7

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD  202 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~  202 (323)
                      +.|.|.+.|.|   .|.++|+|++...... ....++.  .....|.|.+++.+|+|.|.|.| .|..+.  ....+.|.
T Consensus         1 a~l~C~~~G~P---~P~v~W~k~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A-~N~~G~--~~~~~~l~   73 (75)
T cd05763           1 ARLECAATGHP---TPQIAWQKDGGTDFPA-ARERRMHVMPEDDVFFIVDVKIEDTGVYSCTA-QNTAGS--ISANATLT   73 (75)
T ss_pred             CEeEeeccccc---CCEEEEEeCCCccCCc-ccccceEEecCCCEEEEeeCCcccCEEEEEEE-EcCCCE--EEeeEEEE
Confidence            47899999988   7899999988643220 1123333  34468999999999999999999 787433  44444444


Q ss_pred             E
Q psy15235        203 V  203 (323)
Q Consensus       203 v  203 (323)
                      |
T Consensus        74 V   74 (75)
T cd05763          74 V   74 (75)
T ss_pred             E
Confidence            4

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.16  E-value=4.9e-10  Score=76.46  Aligned_cols=81  Identities=19%  Similarity=0.333  Sum_probs=54.4

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-cC-cEEeceeEE---EEe--eeecCCCee
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-SG-RLTQSKDSI---TIR--KTTVDDAGQ  180 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-~~-~~~~~~~~l---~i~--~~~~~d~G~  180 (323)
                      |.+...|....+.+|+.+.|.|.+.+.|   .+.+.|+|+|..+...... .. +.......+   .+.  .+..+|+|.
T Consensus         2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~   78 (100)
T cd07693           2 PRIVEHPSDLIVSKGDPATLNCKAEGRP---TPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV   78 (100)
T ss_pred             CeEEecCceeEEcCCCeEEEEeeCCcCC---CCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence            3444566677788999999999999988   7899999999887541110 11 111112222   222  235789999


Q ss_pred             EEEEEEcCCCCC
Q psy15235        181 YSCRLIDPKSTN  192 (323)
Q Consensus       181 y~C~~~~~~~~~  192 (323)
                      |+|.+ .|..+.
T Consensus        79 Y~C~a-~N~~G~   89 (100)
T cd07693          79 YVCVA-HNSLGE   89 (100)
T ss_pred             EEEEE-Eccccc
Confidence            99999 787544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.16  E-value=1.2e-10  Score=74.00  Aligned_cols=60  Identities=18%  Similarity=0.428  Sum_probs=46.8

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      +.|.|.+.|.|   .+.+.|++++..+...   ..........|.|.++..+|+|.|+|.| .|..+
T Consensus         1 v~l~C~~~g~P---~p~v~W~k~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N~~G   60 (71)
T cd05731           1 LLLECIAEGLP---TPEISWIKIGGELPAD---RTKFENFNKTLKIDNVSEEDDGEYRCTA-SNSLG   60 (71)
T ss_pred             CEEEEEeeEec---CCeEEEEECCeECCCC---ceeEecCCCEEEECCCCHHHCEEEEEEE-EeCCc
Confidence            47899999988   7899999998876531   1112244568999999999999999999 77743

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.15  E-value=2.4e-10  Score=75.79  Aligned_cols=81  Identities=16%  Similarity=0.226  Sum_probs=57.5

Q ss_pred             eeEEecCCcEEEEEEeecCCCC--CCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT  193 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  193 (323)
                      ...+..|.+..|.|...+....  ..+.+.|||++.++..    ..+.......|.|.++..+|+|.|+|.+ .+..+..
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~----~~~~~~~~~~L~I~~v~~~DsG~YtC~~-~n~~~~~   78 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG----DRKRFVKGSKLLIQNVTEEDAGNYTCKL-TFTHNGK   78 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC----CccEEecCCEEEEeeCChhhCEEEEEEE-EecCCCE
Confidence            3457789999999987543210  0579999999998865    3333236678999999999999999999 6664443


Q ss_pred             CCceeeee
Q psy15235        194 TPLAQADF  201 (323)
Q Consensus       194 ~~~~~~~l  201 (323)
                      ....+..+
T Consensus        79 ~~~~t~t~   86 (92)
T cd05757          79 QYNVTRTI   86 (92)
T ss_pred             EEEEEEEE
Confidence            33333333

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.15  E-value=3.2e-10  Score=75.70  Aligned_cols=76  Identities=18%  Similarity=0.368  Sum_probs=55.4

Q ss_pred             eeeCCceeEEec---CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeee-cCCCeeEEEEE
Q psy15235        110 YDIEPKYKVFEY---RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT-VDDAGQYSCRL  185 (323)
Q Consensus       110 ~~~~~~~~~~~~---g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~  185 (323)
                      +...|...++.+   |..+.|.|.+.|.|   .+.++|++++..+...   ..++......|.|.++. .+|+|.|.|.|
T Consensus         4 f~~~P~~~~~~~~~~~~~v~l~C~a~G~P---~P~i~W~k~~~~i~~~---~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A   77 (93)
T cd05849           4 FEEQPIDTIYPEESTEGKVSVNCRARANP---FPIYKWRKNNLDIDLT---NDRYSMVGGNLVINNPDKYKDAGRYVCIV   77 (93)
T ss_pred             EEECCCCEEecCCccCCeEEEeCcCccCC---CCEEEEEECCEEccCC---CCeEEEECCEEEECcCCcCCCCEEEEEEE
Confidence            333455444443   44799999999998   7899999999887431   33444445789998885 68999999999


Q ss_pred             EcCCCCC
Q psy15235        186 IDPKSTN  192 (323)
Q Consensus       186 ~~~~~~~  192 (323)
                       .|..+.
T Consensus        78 -~N~~G~   83 (93)
T cd05849          78 -SNIYGK   83 (93)
T ss_pred             -EeCcce
Confidence             777443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.15  E-value=3.8e-10  Score=75.03  Aligned_cols=85  Identities=24%  Similarity=0.342  Sum_probs=59.7

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT  193 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  193 (323)
                      +....+..|+++.|.|.+.+ +   .+.+.|++++..+........++......|.|.+++.+|+|.|.|.+ .+.. ..
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~~~~-~~   76 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-N---LASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQS-VEHG-FK   76 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-C---CceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEE-ecCc-cc
Confidence            44556788999999999877 5   57999999988765411111344444456999999999999999999 5553 23


Q ss_pred             CCceeeeeEEE
Q psy15235        194 TPLAQADFDVI  204 (323)
Q Consensus       194 ~~~~~~~l~v~  204 (323)
                      ....++.|.|.
T Consensus        77 ~~~~~~~l~V~   87 (89)
T cd04979          77 QTLATYSLNVL   87 (89)
T ss_pred             eeEeEEEEEEe
Confidence            34555555553

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.15  E-value=4.5e-10  Score=75.67  Aligned_cols=73  Identities=23%  Similarity=0.347  Sum_probs=54.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeee-----ecCCCeeEEEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKT-----TVDDAGQYSCRLI  186 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~-----~~~d~G~y~C~~~  186 (323)
                      .|....+.+|+++.|.|.+.+.|   .+.+.|+|+|..+....  ..+.. .....+.|.++     ..+|.|.|+|.+ 
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P---~p~i~W~k~g~~l~~~~--~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a-   78 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEP---PPKIEWKKDGVLLNLVS--DERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVA-   78 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCC---CCEEEEEECCeECcccc--CcceEEccCCeEEEeeeeccCCCCCcCEEEEEEE-
Confidence            55666677899999999999988   78999999999886511  11222 33445667665     578999999999 


Q ss_pred             cCC-CC
Q psy15235        187 DPK-ST  191 (323)
Q Consensus       187 ~~~-~~  191 (323)
                      .|. .+
T Consensus        79 ~N~~~G   84 (95)
T cd05722          79 QNDSLG   84 (95)
T ss_pred             ECCccC
Confidence            666 44

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.13  E-value=5.7e-10  Score=76.95  Aligned_cols=78  Identities=15%  Similarity=0.231  Sum_probs=58.8

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--------eceeEEEEeeee-cCCCeeEEEEEEcCCCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--------QSKDSITIRKTT-VDDAGQYSCRLIDPKST  191 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~  191 (323)
                      .|..++|.|.+.|.|   .+.+.|+++|..+...   ..++.        .....|.|.++. .+|.|.|+|.| .|..+
T Consensus        22 ~g~~v~L~C~a~G~P---~p~i~W~k~g~~l~~~---~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A-~N~~G   94 (109)
T cd05773          22 GSSDANLVCQAQGVP---RVQFRWAKNGVPLDLG---NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTA-HNSLG   94 (109)
T ss_pred             CCCEEEEEEECcccC---CCEEEEEECCEECCCC---CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEE-EeCCc
Confidence            568899999999988   6899999999887531   22332        124679999987 58999999999 78843


Q ss_pred             CCCCceeeeeEEEecc
Q psy15235        192 NTTPLAQADFDVIMKP  207 (323)
Q Consensus       192 ~~~~~~~~~l~v~~~p  207 (323)
                      .  ....+.|.+..+|
T Consensus        95 ~--~~~~i~L~~~~~p  108 (109)
T cd05773          95 E--DSLDIQLVSTSRP  108 (109)
T ss_pred             c--CcEEEEEEecCCC
Confidence            3  5667777776655

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.13  E-value=5.6e-10  Score=72.94  Aligned_cols=79  Identities=20%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             eEEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235        222 KLRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA  298 (323)
Q Consensus       222 ~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~  298 (323)
                      .+.|.|.+.| +|.+.++|+++|..+..........  +.+.  ...+.|.|.....+|.|.|+|.|.|....  .....
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~--~~~~~   76 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELL--KDGKRETTVSTLPITPSDHDTGRTFTCRARNEALP--TGKET   76 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEe--cCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCC--CCcEE
Confidence            3689999976 6888999999998875321111111  1111  23467888888888899999999998855  33566


Q ss_pred             EEEEEE
Q psy15235        299 FVYVRV  304 (323)
Q Consensus       299 ~~~l~v  304 (323)
                      ++.|.|
T Consensus        77 s~~l~v   82 (82)
T cd05759          77 SVTLDV   82 (82)
T ss_pred             EEEEcC
Confidence            666643

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.12  E-value=5.4e-10  Score=71.89  Aligned_cols=71  Identities=24%  Similarity=0.433  Sum_probs=52.9

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD  202 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~  202 (323)
                      +.|.|.+.|.|   .+.+.|+|++..+..  ....++.  .....|.|.++..+|.|.|+|.+ .|..+.  ....+.|.
T Consensus         1 ~~L~C~v~g~P---~p~v~W~k~~~~l~~--~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a-~N~~G~--~~~~~~l~   72 (76)
T cd05736           1 ASLRCHAEGIP---LPRLTWLKNGMDITP--KLSKQLTLIANGSELHISNVRYEDTGAYTCIA-KNEAGV--DEDISSLF   72 (76)
T ss_pred             CEeEeEeeecC---CCEEEEEECCEECCC--CCCccEEEeCCCCEEEECcCCcccCEEEEEEE-EcCCCC--cceEEEEE
Confidence            36899999988   789999999988765  1123333  34457999999999999999999 777443  44555555


Q ss_pred             E
Q psy15235        203 V  203 (323)
Q Consensus       203 v  203 (323)
                      |
T Consensus        73 V   73 (76)
T cd05736          73 V   73 (76)
T ss_pred             E
Confidence            4

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.12  E-value=1.1e-09  Score=73.70  Aligned_cols=75  Identities=23%  Similarity=0.461  Sum_probs=54.1

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee-------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF-------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +....+.+|++++|.|.+.+.|.+.+.|++.+..+.       ..+.++....  . ......|+|.+++.+|+|.|+|.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN--F-SANELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc--C-CCCeeEEEEccCCcccCEEEEEE
Confidence            345678899999999999888888999986433211       0123444421  1 11356899999999999999999


Q ss_pred             Eeecc
Q psy15235        285 GNNVA  289 (323)
Q Consensus       285 a~n~~  289 (323)
                      +.+..
T Consensus        81 ~~~~~   85 (95)
T cd05717          81 LYTMP   85 (95)
T ss_pred             EecCC
Confidence            99765

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>KOG3515|consensus

Probab=99.11  E-value=6.2e-10  Score=98.43  Aligned_cols=184  Identities=19%  Similarity=0.335  Sum_probs=124.8

Q ss_pred             EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCc
Q psy15235        118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL  196 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  196 (323)
                      -+..|+.|.|.|.+.++||  ...+.||+.+....      .++. .....|......++.-+.|.|++ .|. ......
T Consensus        18 ~~~~g~~v~l~C~v~~~pp--~~~~eW~h~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~c~a-~ns-~~~~~~   87 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPP--EIDVEWYHSTSGEH------GRYATIADPTLVTTGDVRDTVAELNCRA-FNS-VGMPSR   87 (741)
T ss_pred             hhccCCcceeeeecCCCCC--CcceEEEecCcccc------cccccccCCceeeecchhhhhhhhhhhh-ccc-ccCcee
Confidence            5778999999999999988  78999999876654      2222 45667888888888888999999 776 233455


Q ss_pred             eeeeeEEEecceee-eeceeEEeeCCeEEEEEEE--ecCCCCcEEEEECCeeeeccCCeeeeecC--CCCC-CcceeEEE
Q psy15235        197 AQADFDVIMKPTAK-LVETLTVIEGEKLRLECLV--VGSPPPTVEWRIGNDTYFRSQGRIKLSEH--PEKG-TANSVLQI  270 (323)
Q Consensus       197 ~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~--~g~p~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~L~i  270 (323)
                      ....+.+.++|... .........+..+.+.|.+  .+.|.+.+.|..++...............  .... ...+.+++
T Consensus        88 ~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~  167 (741)
T KOG3515|consen   88 CPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQ  167 (741)
T ss_pred             cceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceee
Confidence            56667777766443 2333455678899999977  34577789999988765433211111100  1111 23677889


Q ss_pred             eecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcC
Q psy15235        271 DEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYD  312 (323)
Q Consensus       271 ~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~  312 (323)
                      ...+.++.|+|+|.|.|..-. .........+.+..+....+
T Consensus       168 ~v~Rka~~g~~tC~A~nr~s~-~l~~~~~~~i~v~~~~~~~~  208 (741)
T KOG3515|consen  168 TVSRKADNGNYTCPANNRNSP-GLSFAKQLTIIVEAPCKGIG  208 (741)
T ss_pred             EEEEecCCceeEcccccccCc-cccccceeEeecccccccce
Confidence            999999999999999995321 13355566666666555443

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.10  E-value=5.4e-10  Score=74.40  Aligned_cols=76  Identities=20%  Similarity=0.273  Sum_probs=51.5

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEEC----CeeccccccccCcEE---------eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKG----NKSITEATELSGRLT---------QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~----~~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      |+.+.|.|.+.+.|   .|.|.|+++    +..+........+..         .....|.|.+++.+|+|.|+|.| .|
T Consensus         1 G~~v~L~C~~~g~P---~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~N   76 (90)
T cd05858           1 GSTVEFVCKVYSDA---QPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLA-GN   76 (90)
T ss_pred             CCeEEEEEEEecCC---CCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEE-Ee
Confidence            67899999999998   789999984    333322000000000         12357999999999999999999 78


Q ss_pred             CCCCCCCceeeeeEE
Q psy15235        189 KSTNTTPLAQADFDV  203 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v  203 (323)
                      ..+.  ...++.|.|
T Consensus        77 ~~G~--~~~~a~L~V   89 (90)
T cd05858          77 SIGI--SHHSAWLTV   89 (90)
T ss_pred             CCCc--ccceEEEEE
Confidence            8554  444444544

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.10  E-value=2.9e-10  Score=73.45  Aligned_cols=67  Identities=10%  Similarity=0.125  Sum_probs=51.4

Q ss_pred             EeeceEEecCCcEEEEEE--eccCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCc
Q psy15235         27 YFGDTEIMEGAPINISCI--LTIFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRM  103 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~--~~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~  103 (323)
                      .|.++.+.+|+++.|+|.  +.|.| .|+|+++|..+...           .......|.+..+.|+|.|.|.+.|..+.
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-----------~~~~~s~L~i~~~~d~g~Y~C~A~N~~G~   72 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-----------PAPSPSVLNVPGLNETSKFSCEAHNAKGV   72 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-----------CCCCCCEEEEccccCCeEEEEEEEeccCc
Confidence            466788999999999999  55678 79999999877541           01122367777788899999999988764


Q ss_pred             c
Q psy15235        104 N  104 (323)
Q Consensus       104 ~  104 (323)
                      .
T Consensus        73 ~   73 (81)
T cd05749          73 T   73 (81)
T ss_pred             E
Confidence            3

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.10  E-value=1.1e-09  Score=72.64  Aligned_cols=79  Identities=22%  Similarity=0.311  Sum_probs=56.3

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCe--eeec---cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee-c
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGND--TYFR---SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN-V  288 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n-~  288 (323)
                      ..+.+|+++.|.|.. +.|.|.+.|++.+.  ....   ...++...        ...|.|.+++.+|+|.|+|.|.+ .
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--------~~~L~I~~~~~~DsG~Y~C~a~~~~   76 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--------ERGLLLRSLQRSDAGVYTCTAVEHS   76 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe--------cCeEEEeeCChhHCEEEEEEEEccC
Confidence            356789999999996 47888999998432  2111   12333332        46699999999999999999985 4


Q ss_pred             ccCCCCCceeEEEEEEcc
Q psy15235        289 ATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       289 ~g~~~~~~~~~~~l~v~~  306 (323)
                      .+.    ....++|.|..
T Consensus        77 ~~~----~~~~~~l~v~~   90 (91)
T cd05871          77 FSQ----TLAKYTLHVIE   90 (91)
T ss_pred             CeE----EEEEEEEEEec
Confidence            433    55677777753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.10  E-value=8.1e-10  Score=73.49  Aligned_cols=76  Identities=20%  Similarity=0.292  Sum_probs=51.7

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECC----eecccccccc---------CcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGN----KSITEATELS---------GRLTQSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~----~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      |+.++|.|.+.+.|   .|.|+|+|++    ..+.......         ..+......|.|.+++.+|+|.|+|.| .|
T Consensus         1 G~~v~l~C~v~g~P---~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~N   76 (90)
T cd04974           1 GSDVEFHCKVYSDA---QPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLA-GN   76 (90)
T ss_pred             CCcEEEEEEEeCCC---CCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEe-ec
Confidence            67899999999999   8999999964    2221100000         000122357999999999999999999 88


Q ss_pred             CCCCCCCceeeeeEE
Q psy15235        189 KSTNTTPLAQADFDV  203 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v  203 (323)
                      ..+.  ...++.|.|
T Consensus        77 ~~G~--~~~sa~L~V   89 (90)
T cd04974          77 SIGP--SHHSAWLTV   89 (90)
T ss_pred             ccCc--ccCCEEEEe
Confidence            8554  444555554

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.09  E-value=5.5e-10  Score=72.91  Aligned_cols=66  Identities=21%  Similarity=0.450  Sum_probs=47.3

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCe---ec-cccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNK---SI-TEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~---~~-~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      |+.+.|.|.+.+.|   .+.+.|++++.   .+ ........++. .....|.|.++..+|+|.|.|.+ .|..+
T Consensus         1 G~~v~l~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G   71 (81)
T cd05765           1 GETASFHCDVTGRP---PPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTA-RNSGG   71 (81)
T ss_pred             CCcEEEEeeccccC---CCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEE-ecCCc
Confidence            68899999999988   78999999742   11 11001111222 34468999999999999999999 78743

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.09  E-value=3.5e-10  Score=70.14  Aligned_cols=63  Identities=29%  Similarity=0.514  Sum_probs=44.6

Q ss_pred             CCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235        220 GEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG  285 (323)
Q Consensus       220 g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a  285 (323)
                      |++++|.|.+ .+.+...+.|++++.............   ........|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRST---NSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEE---TTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeec---ccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 666778999999987654322111111   01101123999999999999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.09  E-value=5.8e-10  Score=72.75  Aligned_cols=66  Identities=24%  Similarity=0.446  Sum_probs=51.2

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      +....+.+|++++|.|.+....+  ..++.|||+|..+..        ......|.|.+++.+|+|.|+|.+ .+..
T Consensus         6 ~p~~~V~~G~~vtL~C~~~~~~~--~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~-~~~~   71 (83)
T cd05753           6 VPSRVVFEGEPLVLRCHGWKNKP--VYKVTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSG-IIGS   71 (83)
T ss_pred             CCcceecCCCCEEEEeeCCCCCc--ceEEEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEE-EeCC
Confidence            44456889999999999865433  568999999976643        123467999999999999999999 5653

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.08  E-value=9.2e-10  Score=73.05  Aligned_cols=74  Identities=16%  Similarity=0.264  Sum_probs=52.7

Q ss_pred             EEeeCCeEEEEEEEecCCCCcEEEEECCeee-eccCCe------------eeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235        216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTY-FRSQGR------------IKLSEHPEKGTANSVLQIDEATMADRGNYY  282 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~  282 (323)
                      .+.+|++++|.|.+.+.+.+.+.|++++... ....++            +.... .........|+|.+++.+|+|+|.
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~-~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR-NLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec-ccCCCCeEEEEECCCCHHHCEEEE
Confidence            4678999999999998888999999876332 211122            21111 000113567999999999999999


Q ss_pred             EEEeeccc
Q psy15235        283 CHGNNVAT  290 (323)
Q Consensus       283 C~a~n~~g  290 (323)
                      |.+.|..+
T Consensus        82 C~v~~~~~   89 (94)
T cd07690          82 CEVEDKKE   89 (94)
T ss_pred             EEECCccc
Confidence            99999873

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.07  E-value=5.5e-10  Score=71.83  Aligned_cols=64  Identities=23%  Similarity=0.587  Sum_probs=46.5

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      +.|+|.+.+..|  .+.+.||++|..+........++.    .....|.|.++..+|+|.|+|.+ .|..+
T Consensus         1 ~~L~C~a~~~~p--~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a-~N~~g   68 (76)
T cd05895           1 LVLRCETVSEYP--SLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMV-SSKLG   68 (76)
T ss_pred             CEEEEecccCCC--CCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEE-EeCCC
Confidence            479999876443  679999999988754111122222    34578999999999999999999 77743

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.06  E-value=1e-09  Score=72.07  Aligned_cols=75  Identities=19%  Similarity=0.384  Sum_probs=52.0

Q ss_pred             CCcEEEEEEeecC--CCCCCceEEEEECCeeccccccccCcE-----EeceeEEEEeeeecCCCeeEEEEEEcCCCCCCC
Q psy15235        122 RVPFTLKCNVTSP--PPGDDYQIVWYKGNKSITEATELSGRL-----TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT  194 (323)
Q Consensus       122 g~~v~l~C~~~~~--~~~~~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  194 (323)
                      |+.++|.|.+.+.  +   .+.+.|++++..+........+.     ......|.|.+++.+|+|.|+|.+ .|..+.  
T Consensus         1 Ge~~~L~C~~~g~~~~---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a-~n~~~~--   74 (84)
T cd05742           1 GETLVLNCTVLTELNE---GVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAA-SSGTMD--   74 (84)
T ss_pred             CCeEEEEEEEEeCCCc---cEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEE-ccCCCc--
Confidence            7889999999998  5   78999998776543210001011     134568999999999999999999 777433  


Q ss_pred             CceeeeeE
Q psy15235        195 PLAQADFD  202 (323)
Q Consensus       195 ~~~~~~l~  202 (323)
                      ...+..|.
T Consensus        75 ~~~s~~v~   82 (84)
T cd05742          75 QKESTKVN   82 (84)
T ss_pred             eEEEEEEE
Confidence            34444443

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.06  E-value=3e-09  Score=72.06  Aligned_cols=73  Identities=22%  Similarity=0.266  Sum_probs=54.7

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeeccccccccCcEE--------eceeEEEEeeeec-CCCeeEEE
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATELSGRLT--------QSKDSITIRKTTV-DDAGQYSC  183 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~-~d~G~y~C  183 (323)
                      +....+..|+.+.|.|.+.+.|   .+ .|.|++++..+....  ..++.        .....|.|.++.. +|.|.|.|
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P---~P~~v~W~~~~~~i~~~~--~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C   82 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTP---PPDRIVWTWKENELESGS--SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNC   82 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccC---CCCEeEEEECCEEccCCC--CCCEEEEEecCCCceEEEEEECCccccccceeEEE
Confidence            4445578899999999999988   66 699999998776411  23443        1124799999998 45899999


Q ss_pred             EEEcCCCCC
Q psy15235        184 RLIDPKSTN  192 (323)
Q Consensus       184 ~~~~~~~~~  192 (323)
                      .| .|..+.
T Consensus        83 ~A-~N~~G~   90 (98)
T cd05758          83 TA-WNSFGS   90 (98)
T ss_pred             EE-EcCCCc
Confidence            99 787443

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.05  E-value=5e-10  Score=71.91  Aligned_cols=64  Identities=25%  Similarity=0.612  Sum_probs=47.7

Q ss_pred             EEEEEEeec-CCCCCCceEEEEECCeeccccccccC-cEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        125 FTLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSG-RLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       125 v~l~C~~~~-~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      +.|.|.+.+ .|   .+.+.|++++..+........ ++.  .....|.|.++..+|+|.|+|.+ .|..+.
T Consensus         1 ~~l~C~~~g~~P---~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G~   68 (75)
T cd05750           1 LVLKCEATSEYP---SLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVV-ENILGN   68 (75)
T ss_pred             CEEEEEccCCCC---CceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEE-EEcCCc
Confidence            468999999 66   789999999988865211110 111  34578999999999999999999 777443

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.05  E-value=2e-09  Score=72.14  Aligned_cols=69  Identities=20%  Similarity=0.336  Sum_probs=50.0

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc-c---ccccCcEE-----eceeEEEEeeeecCCCeeEEEEE
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-A---TELSGRLT-----QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-~---~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      +...+.+|++++|.|.+.+.+   .+.+.|++.+..+.. .   ...++|+.     .....|.|.+++.+|+|.|.|.+
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p---~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~   81 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQND---NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL   81 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCC---ceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence            445688999999999999887   789999874321100 0   01134543     24468999999999999999999


Q ss_pred             E
Q psy15235        186 I  186 (323)
Q Consensus       186 ~  186 (323)
                      .
T Consensus        82 ~   82 (95)
T cd07701          82 F   82 (95)
T ss_pred             E
Confidence            3

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.05  E-value=8.2e-10  Score=71.08  Aligned_cols=62  Identities=18%  Similarity=0.408  Sum_probs=46.6

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeec----CCCeeEEEEEEcCCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTV----DDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~  192 (323)
                      ++|.|.+.|.|   .++|+|+|++..+...  ...++.  .....|.|..+..    +|+|.|.|.| .|..+.
T Consensus         1 i~l~C~~~G~P---~P~v~W~k~g~~l~~~--~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A-~N~~G~   68 (77)
T cd05733           1 IVIKCEAKGNP---PPTFSWTRNGTHFDPE--KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYA-SNELGT   68 (77)
T ss_pred             CEEEeeCcccC---CCeEEEEECCeECCCC--CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEE-EcCCCc
Confidence            47899999998   7899999999887541  122333  4467888888753    6899999999 777543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.04  E-value=1.3e-09  Score=72.67  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG  285 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a  285 (323)
                      +|.+...+...+.+|+.++|.|... .+...+.|+++|......  .      .........+.|.+++.+|+|.|+|.+
T Consensus         2 kP~L~a~p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~--~------~~~~~~~~~f~i~~v~~~~~G~Y~C~~   72 (91)
T cd05751           2 KPSLWAEPSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK--K------PPEPQNKAKFFIPSMKREHAGRYRCYY   72 (91)
T ss_pred             CCEEEecCCCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc--c------cCCCceeEEEEccCCChhHCEEEEEEE
Confidence            4666666667788999999999885 567789999998753311  0      001124678999999999999999999


Q ss_pred             eecccCCCCCceeEEEEEE
Q psy15235        286 NNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       286 ~n~~g~~~~~~~~~~~l~v  304 (323)
                      .+.... ....+..+.|.|
T Consensus        73 ~~~~~~-~S~~Sd~lel~V   90 (91)
T cd05751          73 RSGVAL-WSEPSDPLELVV   90 (91)
T ss_pred             ECCCCc-cCCCCCcEEEEe
Confidence            986311 122344455554

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.03  E-value=3.3e-09  Score=70.78  Aligned_cols=73  Identities=19%  Similarity=0.410  Sum_probs=52.6

Q ss_pred             CCceeEEec---CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeee-cCCCeeEEEEEEcC
Q psy15235        113 EPKYKVFEY---RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT-VDDAGQYSCRLIDP  188 (323)
Q Consensus       113 ~~~~~~~~~---g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~  188 (323)
                      .|....+..   |..+.|.|.+.+.|   .+.++|++++..+...  ...++......|.|.++. .+|+|.|+|.| .|
T Consensus         7 ~p~~~~~~~~~~~~~~~l~C~~~g~p---~p~i~W~k~~~~l~~~--~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a-~N   80 (91)
T cd04967           7 QPDDTIFPEESDEGKVSLNCRARGSP---PPTYRWLMNGTEIDDE--PDSRYSLVGGNLVISNPSKAKDAGRYQCLA-SN   80 (91)
T ss_pred             CCCCEEccCCCCCCEEEEEEeeeEcC---CCEEEEEECCEECCCC--CCCCEEEECCEEEEecCCccCCCEEEEEEE-Ec
Confidence            444444333   46799999999987   7899999999887431  123444445678888876 48999999999 67


Q ss_pred             CCC
Q psy15235        189 KST  191 (323)
Q Consensus       189 ~~~  191 (323)
                      ..+
T Consensus        81 ~~G   83 (91)
T cd04967          81 IVG   83 (91)
T ss_pred             CCC
Confidence            643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.03  E-value=4.2e-09  Score=70.34  Aligned_cols=69  Identities=19%  Similarity=0.380  Sum_probs=51.3

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc-c---ccccCcEE-----eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-A---TELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-~---~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      ...+..|+++.|.|.+.+.+   .+.|.|++++..+.. .   .....++.     .....|.|.+++.+|+|.|+|.+.
T Consensus         6 ~~tv~~G~tv~L~C~v~g~~---~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~   82 (95)
T cd05882           6 DETVAVGGTVTLKCGVKEHD---NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF   82 (95)
T ss_pred             cEEEecCCcEEEEEEEeCCC---CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence            35577899999999999987   789999998754311 0   00123433     235789999999999999999994


Q ss_pred             c
Q psy15235        187 D  187 (323)
Q Consensus       187 ~  187 (323)
                      .
T Consensus        83 t   83 (95)
T cd05882          83 T   83 (95)
T ss_pred             e
Confidence            3

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.03  E-value=1.4e-08  Score=73.65  Aligned_cols=105  Identities=19%  Similarity=0.303  Sum_probs=62.6

Q ss_pred             EEEeecc--cCcceEEEeeccCCccceeeeeee--CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235         82 YSIHEAI--LESGYVQSSLFIPRMNAITGNYDI--EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI  151 (323)
Q Consensus        82 l~i~~~~--~~G~Y~C~~~~~~~~~~~~~~~~~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~  151 (323)
                      |.|.+++  |+|.|+|.+.+..+.......+.+  .|.+.+      ...|+.+.|.|.+.+..|. ...|.|++++...
T Consensus         3 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~-~~~i~W~~~g~~~   81 (139)
T cd05771           3 LTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPL-DVQVEWTREPPGD   81 (139)
T ss_pred             EEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCC-CeEEEEEECCCCC
Confidence            4555554  599999999876555433333333  343332      2257889999999997652 3699999987542


Q ss_pred             cc------ccc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        152 TE------ATE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       152 ~~------~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..      ...       .++.+ .....|.+.....++.+.|+|.+ .+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~dgt~-~~~s~L~v~~~~~~~g~~ytC~V-~H~  130 (139)
T cd05771          82 SPPPVSLSNVSFSSHRQHQDGTY-SLSSHLTLEPGTEDAGATYTCRV-SHV  130 (139)
T ss_pred             ccceeccCCeEecceEeCCCCCE-EEEEEEEecCCccCCCCEEEEEE-EcC
Confidence            11      000       01111 22345555544444566999999 665

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.02  E-value=3.5e-09  Score=69.79  Aligned_cols=65  Identities=23%  Similarity=0.496  Sum_probs=51.3

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..+..|+.++|.|.+.+.+   .+.+.|++++..+..    .....     .....|.|.++..+|.|.|.|.+ .+.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p---~~~v~W~k~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~-~n~   73 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNP---RPTITWLKDGKPFKK----EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIV-ENK   73 (85)
T ss_pred             eEecCCCcEEEEEEcCCCC---CCeEEEEECCEECcc----cCceeEEEccCcEEEEEEeECCcccCEEEEEEE-EEC
Confidence            3466799999999999887   679999999987754    22221     23457899999999999999999 666

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.01  E-value=1.4e-09  Score=69.85  Aligned_cols=61  Identities=13%  Similarity=0.352  Sum_probs=44.7

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeec----CCCeeEEEEEEcCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTV----DDAGQYSCRLIDPKST  191 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~  191 (323)
                      +.|.|.+.|.|   .|+|+|+|++.++....  ..++.  .....|.|..+..    .|+|.|+|.| .|..|
T Consensus         1 ~~l~C~a~G~P---~P~i~W~k~g~~l~~~~--~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A-~N~~G   67 (77)
T cd05874           1 IVIQCEAKGKP---PPSFSWTRNGTHFDIDK--DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTA-RNERG   67 (77)
T ss_pred             CEEEeeCcccC---CCeEEEEECCeECCCcC--CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEE-EcCCC
Confidence            47999999998   89999999998874311  22232  3456788877764    3789999999 77643

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.01  E-value=6.2e-09  Score=66.34  Aligned_cols=75  Identities=17%  Similarity=0.345  Sum_probs=52.1

Q ss_pred             cEEEEEEeecCCCCCCceEEEEECCeecccccc--ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC-CCceeee
Q psy15235        124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE--LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT-TPLAQAD  200 (323)
Q Consensus       124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~~  200 (323)
                      .+.|+|...+..|  .+.|+||+++.++.....  ..++.......|.|.....+|.+.|+|+| .|..... .......
T Consensus         1 ~~~L~C~s~~skP--~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A-~n~a~~~~~~~~~~~   77 (80)
T cd05885           1 EVELTCLSPRSKP--AATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEA-SHPALVSQKKQTQYS   77 (80)
T ss_pred             CEEEEEeCCCccC--CCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEE-EChhhCCCCeeEEEE
Confidence            3789999988766  789999999999865211  11111144567999999999999999999 6764432 2344444


Q ss_pred             e
Q psy15235        201 F  201 (323)
Q Consensus       201 l  201 (323)
                      |
T Consensus        78 l   78 (80)
T cd05885          78 L   78 (80)
T ss_pred             E
Confidence            4

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>smart00410 IG_like Immunoglobulin like

Probab=99.01  E-value=1.3e-08  Score=66.99  Aligned_cols=82  Identities=35%  Similarity=0.594  Sum_probs=61.3

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEEC-CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIG-NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+. ...++....  ..  ....|.|.++..+|.|.|.|.+.+..+. 
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-~~~~~~~~~--~~--~~~~l~i~~~~~~d~G~Y~C~v~~~~~~-   76 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-ESGRFSVSR--SG--SNSTLTISNVTPEDSGTYTCAATNSSGS-   76 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-CCCcEEEEE--cC--CeeEEEEEeeccccCeEEEEEEEcCCCe-
Confidence            34567899999999998887889999998 66654 223444431  11  1478999999999999999999988755 


Q ss_pred             CCCceeEEEEEE
Q psy15235        293 SQPNEAFVYVRV  304 (323)
Q Consensus       293 ~~~~~~~~~l~v  304 (323)
                         ....+.|.|
T Consensus        77 ---~~~~~~l~V   85 (86)
T smart00410       77 ---ASSTTTLTV   85 (86)
T ss_pred             ---EEEEEEEEE
Confidence               445566655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.01  E-value=1.3e-08  Score=66.99  Aligned_cols=82  Identities=35%  Similarity=0.594  Sum_probs=61.3

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEEC-CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIG-NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+. ...++....  ..  ....|.|.++..+|.|.|.|.+.+..+. 
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-~~~~~~~~~--~~--~~~~l~i~~~~~~d~G~Y~C~v~~~~~~-   76 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-ESGRFSVSR--SG--SNSTLTISNVTPEDSGTYTCAATNSSGS-   76 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-CCCcEEEEE--cC--CeeEEEEEeeccccCeEEEEEEEcCCCe-
Confidence            34567899999999998887889999998 66654 223444431  11  1478999999999999999999988755 


Q ss_pred             CCCceeEEEEEE
Q psy15235        293 SQPNEAFVYVRV  304 (323)
Q Consensus       293 ~~~~~~~~~l~v  304 (323)
                         ....+.|.|
T Consensus        77 ---~~~~~~l~V   85 (86)
T smart00409       77 ---ASSTTTLTV   85 (86)
T ss_pred             ---EEEEEEEEE
Confidence               445566655

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=99.00  E-value=1.5e-09  Score=69.68  Aligned_cols=74  Identities=34%  Similarity=0.630  Sum_probs=49.8

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecCC-CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.|..........+..+.|.|.+.+.+ .+.+.|+ +..............       ..++|.|.++..+|.|.|+|.
T Consensus         1 kP~I~~~~~~~~~~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~~~g~y~C~   72 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSS-------SNSTLTISNVTRSDNGTYTCI   72 (75)
T ss_dssp             ESEEEEESTSEEETTEEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEE-------EEEEEEESSCCGGGTEEEEEE
T ss_pred             CCEEEEcCCCcEeeceeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccc-------eeeEEEEccCCHHhCcEEEEE
Confidence            3555544444444444599999998876 7789999 222211111122222       478899999999999999999


Q ss_pred             Eee
Q psy15235        285 GNN  287 (323)
Q Consensus       285 a~n  287 (323)
                      |.|
T Consensus        73 a~N   75 (75)
T PF13927_consen   73 ASN   75 (75)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            987

...

>PHA03376 BARF1; Provisional

Probab=99.00  E-value=6e-08  Score=70.54  Aligned_cols=116  Identities=11%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             ceEEecCCcEEEEEEecc-----CceEEEEEcC----ccc--------eeeccCcceEEEeeeeCCeEEEEEeecc--cC
Q psy15235         30 DTEIMEGAPINISCILTI-----FEQVKWQLNG----RNI--------NQSSVDSGFAATANLTEDNFKYSIHEAI--LE   90 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~~~-----~~~v~W~~~g----~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~   90 (323)
                      ++.+..|+.+.|+|...|     ...|.|+|.+    ...        .......+..+.+-.+.+++.|.|.+++  |.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            577899999999999553     3589999942    111        1111222233333333578888887765  59


Q ss_pred             cceEEEeeccCCccceeee--------eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC
Q psy15235         91 SGYVQSSLFIPRMNAITGN--------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN  148 (323)
Q Consensus        91 G~Y~C~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~  148 (323)
                      |.|+|.+....+.......        +.+...-..+..-+..++.|.+.++|   .|.++|..+.
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP---~P~~~Wle~~  162 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFP---HPHVQWLMPE  162 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcC---Cchheecccc
Confidence            9999999765433221111        22222111233356678999977777   8999998754

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.00  E-value=2.1e-09  Score=69.69  Aligned_cols=64  Identities=28%  Similarity=0.502  Sum_probs=46.6

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeecccc---c-cccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEA---T-ELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~---~-~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      ++|.|.+.|.|   .|.+.|++++......   . ....++. .....|.|.++..+|+|.|.|.| .|..+.
T Consensus         1 v~l~C~~~G~P---~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G~   69 (79)
T cd05734           1 VTLNCSAEGYP---PPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKV-SNDVGA   69 (79)
T ss_pred             CEeEeeCeEeC---CCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEE-EeCCCC
Confidence            57999999988   7899999964322110   0 1234444 45578999999999999999999 777543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.99  E-value=1.1e-08  Score=67.86  Aligned_cols=74  Identities=20%  Similarity=0.376  Sum_probs=56.3

Q ss_pred             ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee-------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF-------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG  285 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a  285 (323)
                      .+..+.+|+++.|.|.+.+.....+.|++.+..+.       ..+.|+....  .. ....+|+|.+++.+|.|.|.|.+
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~--~~-~~~~tL~I~~vq~~D~G~Y~Cqv   81 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVN--FS-SNELRVSLSNVSLSDEGRYFCQL   81 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEe--CC-CCEEEEEECcCCcccCEEEEEEE
Confidence            45678899999999999887667788987764432       2456666552  11 24678999999999999999999


Q ss_pred             eecc
Q psy15235        286 NNVA  289 (323)
Q Consensus       286 ~n~~  289 (323)
                      ....
T Consensus        82 ~t~p   85 (95)
T cd05881          82 YTDP   85 (95)
T ss_pred             Eccc
Confidence            8754

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.99  E-value=4.3e-09  Score=69.89  Aligned_cols=78  Identities=19%  Similarity=0.287  Sum_probs=57.0

Q ss_pred             eEEeeCCeEEEEEEEe-----------cCCCCcEEEEECCeeeeccC------CeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        215 LTVIEGEKLRLECLVV-----------GSPPPTVEWRIGNDTYFRSQ------GRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~-----------g~p~~~~~W~~~~~~~~~~~------~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      ..+.+|+++.|.|...           ......+.|+|++..+....      .|+...        ...|.|.++..+|
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~--------~~~Lwf~Pa~~eD   81 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE--------EDSIWFRPAELQD   81 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe--------CCEEEEEeCChhh
Confidence            5578899999999972           11234799999975544322      244333        6889999999999


Q ss_pred             CeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        278 RGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       278 ~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      +|.|+|.+.|....    ....+.|.|
T Consensus        82 SG~Y~C~~rN~t~C----~~~~i~l~V  104 (104)
T cd05896          82 SGLYTCVLRNSTYC----MKVSMSLTV  104 (104)
T ss_pred             CeEEEEEECCCCcc----eEEEEEEEC
Confidence            99999999998854    555655543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.98  E-value=2.5e-09  Score=68.68  Aligned_cols=61  Identities=18%  Similarity=0.367  Sum_probs=45.0

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeee----cCCCeeEEEEEEcCCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTT----VDDAGQYSCRLIDPKST  191 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~----~~d~G~y~C~~~~~~~~  191 (323)
                      +.|.|.+.|.|   .+.|+|+|++..+...  ...++.  .....|.|..+.    .+|+|.|+|.| .|..+
T Consensus         1 ~~l~C~~~G~P---~P~v~W~k~g~~~~~~--~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A-~N~~G   67 (77)
T cd05875           1 IIIECEAKGNP---VPTFQWTRNGKFFNVA--KDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFA-RNNLG   67 (77)
T ss_pred             CEEEEeccccC---CCEEEEEECCEEccCc--CCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEE-Eeccc
Confidence            47899999998   8999999999876421  133333  345688888764    24699999999 77744

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>PHA03376 BARF1; Provisional

Probab=98.96  E-value=2.3e-08  Score=72.63  Aligned_cols=125  Identities=16%  Similarity=0.243  Sum_probs=75.3

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCe----ec---------cccccccCcEE----eceeEEEEeeeecCCCe
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK----SI---------TEATELSGRLT----QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~----~~---------~~~~~~~~~~~----~~~~~l~i~~~~~~d~G  179 (323)
                      ..+..|+.+.|+|............|.|+|++.    .+         .....+.+++.    .++.+|.|.+++.+|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            346679999999987632211267999999431    11         11112333333    56788999999999999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEEecceeeeec-eeEEeeCCeEEEEEEEecCCCCcEEEEECCe
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE-TLTVIEGEKLRLECLVVGSPPPTVEWRIGND  244 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~  244 (323)
                      +|+|.+..+.  . ....-.-+++..+-.+++.. ......-+..++.|.+.|+|.|.++|..+..
T Consensus       101 tY~C~fQkge--~-~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        101 NYLCRMKLGE--T-EVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             eEEEEEEcCC--C-ceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            9999994322  1 11111122222222232211 0111225678999998889999999997654

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.96  E-value=3.2e-09  Score=69.91  Aligned_cols=69  Identities=25%  Similarity=0.481  Sum_probs=53.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .|....+.+|++++|.|.+.+..|  .+.+.|++++..+..      +.......|.|.+++.+|+|.|.|.+ .|..
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~--~~~i~W~~~~~~~~~------~~~~~~~~L~I~~v~~~DsG~Y~C~a-~n~~   75 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSP--AYTLVWTRVGGGLPS------RAMDFNGILTIRNVQLSDAGTYVCTG-SNML   75 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCC--CcEEEEEECCCcCCC------cccccCCEEEECCCCHHHCEEEEEEE-eccC
Confidence            566667889999999999876433  689999998866533      11233568999999999999999999 7764

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.94  E-value=6.8e-09  Score=63.91  Aligned_cols=61  Identities=31%  Similarity=0.623  Sum_probs=48.9

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +|++++|.|.+.+.+   .+.+.|++++..+..    ..........|.|.++..+|+|.|+|.+ .+.
T Consensus         1 ~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~n~   61 (63)
T smart00408        1 EGQSVTLTCPAEGDP---VPNITWLKDGKPLPE----SNRLSASGSTLTIKSVSLEDSGEYTCVA-ENS   61 (63)
T ss_pred             CCceEEEEeeCccCC---CCeEEEEECCEECCC----CCEEecCCcEEEEeeCCcccCEEEEEEE-ecC
Confidence            478999999987777   679999999887652    2233355678999999999999999999 654

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.92  E-value=7.4e-09  Score=68.53  Aligned_cols=71  Identities=21%  Similarity=0.289  Sum_probs=53.4

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ....+.+|+.+.|.|......|  .+.|.|++++.++... ....++. ..++.|.|.++..+|+|.|+|.| .+.
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P--~p~~~W~k~~~~~~~~-~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A-~n~   82 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYP--DLSYRWLLNEFPNFIP-EDGRRFVSQTNGNLYIAKVEASDRGNYSCFV-SSP   82 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCC--CCEEEEEECCcccccc-cCCCeEEeCCCCcEEEeecCHhhCceeEEEE-Eec
Confidence            3455778999999998766554  7899999998754221 1122333 45789999999999999999999 665

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.90  E-value=2.1e-08  Score=66.49  Aligned_cols=68  Identities=19%  Similarity=0.290  Sum_probs=47.3

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCe--eccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK--SITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ....+|++++|.|.. +.|   .+.+.||+.+.  ..........++......|.|.++..+|+|.|+|.+ .+.
T Consensus         6 ~~~~eG~~v~L~C~~-~~p---~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a-~~~   75 (91)
T cd05871           6 VYGVENNSTFLECLP-KSP---QASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTA-VEH   75 (91)
T ss_pred             EEEecCCcEEEEEEC-CCC---CceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEE-Ecc
Confidence            346789999999986 445   68999998432  211100113455444567999999999999999999 543

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.89  E-value=2.2e-08  Score=65.05  Aligned_cols=59  Identities=29%  Similarity=0.610  Sum_probs=48.1

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..+..|+.++|.|.+.+.+   ...+.|++++..+..         . ...+.+..+..+|.|.|+|.+ .+.
T Consensus         9 ~~v~~g~~~~l~C~~~~~p---~~~~~w~~~~~~~~~---------~-~~~~~~~~~~~~~~g~y~C~~-~~~   67 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNP---PPQVQWYKNGSPINS---------S-QNGLFIPNVSPEDSGNYTCRA-SNG   67 (80)
T ss_dssp             SEEETTSEEEEEEEEESSS---SSEEEEEETTEEEEE---------E-SSEEEESSEEGGGTEEEEEEE-EET
T ss_pred             eEEeCCCcEEEEEEEEccc---ceeeeeeeeeeeeee---------e-eeeeeeeeeccccCEEEEEEE-EeC
Confidence            4477899999999999877   679999999887764         1 122777889999999999999 554

...

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.89  E-value=1.5e-08  Score=67.29  Aligned_cols=72  Identities=24%  Similarity=0.451  Sum_probs=50.8

Q ss_pred             eEEecCCcEEEEEEeec------CC--CCCCceEEEEECCeeccccc--cc-cCcEEeceeEEEEeeeecCCCeeEEEEE
Q psy15235        117 KVFEYRVPFTLKCNVTS------PP--PGDDYQIVWYKGNKSITEAT--EL-SGRLTQSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~------~~--~~~~~~i~W~~~~~~~~~~~--~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      ..+.+|+++.|.|....      ++  ......+.|||++.......  .+ ..|+......|.|.++..+|+|.|+|.+
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~   89 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL   89 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence            44678999999998621      11  00034899999975443311  11 1366667789999999999999999999


Q ss_pred             EcCC
Q psy15235        186 IDPK  189 (323)
Q Consensus       186 ~~~~  189 (323)
                       .|.
T Consensus        90 -rN~   92 (104)
T cd05896          90 -RNS   92 (104)
T ss_pred             -CCC
Confidence             777

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.88  E-value=2.7e-08  Score=65.99  Aligned_cols=69  Identities=16%  Similarity=0.254  Sum_probs=50.3

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc----cccccCcEE-----eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE----ATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~----~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      ...+.+|++++|.|.+.+..   ...+.|++.+..+..    ....+.|+.     ....+|+|.+++.+|+|.|.|.+.
T Consensus         6 nvtv~~G~ta~L~C~v~~~~---~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~   82 (95)
T cd05881           6 DVTVVEGEVAIISCRVKNND---DSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY   82 (95)
T ss_pred             ceEEcCCCcEEEEEEEccCC---ccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence            34577899999999999876   567899876643210    011245555     345579999999999999999994


Q ss_pred             c
Q psy15235        187 D  187 (323)
Q Consensus       187 ~  187 (323)
                      .
T Consensus        83 t   83 (95)
T cd05881          83 T   83 (95)
T ss_pred             c
Confidence            3

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.88  E-value=3.3e-08  Score=64.53  Aligned_cols=76  Identities=20%  Similarity=0.496  Sum_probs=50.8

Q ss_pred             cEEEEEEeecCCCCCCceEEEEECCeeccccccc-----cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235        124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-----SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ  198 (323)
Q Consensus       124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  198 (323)
                      .+.|.|.+.+..|  .+.++|+++|.++......     .+........|.+.....+|.|.|+|.+ .|.........+
T Consensus         1 ~~~L~C~v~g~~P--~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a-~n~~l~~~~~~s   77 (82)
T cd05759           1 PYNLTCRARGAKP--AAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRA-RNEALPTGKETS   77 (82)
T ss_pred             CEEEEEEEeCccC--CCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEE-cCccCCCCcEEE
Confidence            3689999988644  5799999999877541110     0111122346778777777889999999 787655555555


Q ss_pred             eeeE
Q psy15235        199 ADFD  202 (323)
Q Consensus       199 ~~l~  202 (323)
                      ++|.
T Consensus        78 ~~l~   81 (82)
T cd05759          78 VTLD   81 (82)
T ss_pred             EEEc
Confidence            5554

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.87  E-value=6.1e-09  Score=64.51  Aligned_cols=57  Identities=30%  Similarity=0.658  Sum_probs=42.8

Q ss_pred             CCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcEE--ec----eeEEEEeeeecCCCeeEEEEE
Q psy15235        122 RVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRLT--QS----KDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       122 g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~----~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      |++++|.|.+ .+.+   ...+.|++++.....    .....  ..    ...|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~---~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPP---PTTVTWSKNGQSLPE----GSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSS---TSEEEEEETTTTTSE----EEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCC---CcEEEEEECCccccC----cceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 5555   689999998876654    22111  11    113999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.86  E-value=4.8e-08  Score=65.22  Aligned_cols=75  Identities=20%  Similarity=0.263  Sum_probs=55.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--------eceeEEEEeeeecCC-CeeEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--------QSKDSITIRKTTVDD-AGQYSC  183 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d-~G~y~C  183 (323)
                      ......+.+|+++.|.|.+.+.|+  +..|.|..++..+...  ...++.        .....|.|.++...| .|.|.|
T Consensus         7 ~~~s~~~~~G~~~~L~C~~~s~P~--P~~i~W~w~~~~i~~~--~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C   82 (98)
T cd05898           7 SEQVQYAVRGERGKVKCFIGSTPP--PDRIAWAWKENVLESG--TSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNC   82 (98)
T ss_pred             cCceEEEeCCCcEEEEEEEccCCC--CcEEEEEEccccccCC--CCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEE
Confidence            445566889999999999988775  4588998887766441  123443        356789999998766 799999


Q ss_pred             EEEcCCCCC
Q psy15235        184 RLIDPKSTN  192 (323)
Q Consensus       184 ~~~~~~~~~  192 (323)
                      .| .|..+.
T Consensus        83 ~a-~N~~G~   90 (98)
T cd05898          83 TA-WNSFGS   90 (98)
T ss_pred             EE-EeCCcc
Confidence            99 787443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.86  E-value=1.8e-08  Score=65.21  Aligned_cols=63  Identities=17%  Similarity=0.282  Sum_probs=52.5

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      ...+..|+.+.|.|...+..    ..+.|+.++..+..    +.++......|.|..++..|+|.|.|.+.
T Consensus         5 ~~tv~~g~~v~L~C~~~s~~----A~v~W~~ng~~l~~----~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSNL----ASPVWLFNGTPLNA----QFSYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             EEEEecCCCEEEECCCCCCC----ccEEEEECCcccCC----CcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            34577899999999988864    59999999998876    56666556668899999999999999994

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.86  E-value=9.3e-09  Score=68.13  Aligned_cols=82  Identities=15%  Similarity=0.291  Sum_probs=54.4

Q ss_pred             eEEecCCcEEEEEEe-ecC-CCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        117 KVFEYRVPFTLKCNV-TSP-PPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~-~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      +.+..|....|.|.- .++ .+...+.+.||||+.++...   ..++.  .....|.|.++..+|+|.|+|++ .+..+.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~---~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~-~~~~~g   80 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD---NEKFYSLKGSTYLHIIDVSLNDSGYYTCKL-QFTHEG   80 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC---CcceEecCCCCEEEEEEcChhhCEEEEEEE-EEeeCC
Confidence            456678999999963 222 01115799999999988641   12222  23457999999999999999999 665444


Q ss_pred             CCCceeeeeE
Q psy15235        193 TTPLAQADFD  202 (323)
Q Consensus       193 ~~~~~~~~l~  202 (323)
                      .....+..+.
T Consensus        81 ~~y~vtr~~~   90 (95)
T cd05897          81 KKYNITRIIK   90 (95)
T ss_pred             EEEEEEEEEE
Confidence            3333343333

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.86  E-value=3.1e-08  Score=66.66  Aligned_cols=68  Identities=24%  Similarity=0.372  Sum_probs=48.0

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeec-ccc---ccccCcEE-----eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI-TEA---TELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~-~~~---~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      ...+.+|++++|.|.+.+.+   .+.+.|++.+..+ ...   .....|+.     .....|.|.+++.+|+|.|+|.+.
T Consensus         6 ~~~v~~G~~v~L~C~~~~~~---~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   82 (95)
T cd05717           6 DVTVVEGGTATLKCRVKNND---NSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY   82 (95)
T ss_pred             cEEEcCCCCEEEEEEECCCC---CceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence            34577899999999998766   6799998633221 100   00123443     234679999999999999999994

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.86  E-value=8e-08  Score=66.59  Aligned_cols=89  Identities=18%  Similarity=0.321  Sum_probs=58.2

Q ss_pred             eceeEEeeCCeEEEEEEEecCC----CCcEEEEE---------------CCeeeecc----CCeeeeecCCCCCCcceeE
Q psy15235        212 VETLTVIEGEKLRLECLVVGSP----PPTVEWRI---------------GNDTYFRS----QGRIKLSEHPEKGTANSVL  268 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~---------------~~~~~~~~----~~~~~~~~~~~~~~~~~~L  268 (323)
                      +....+..|+.++|.|......    ...+.|.+               +|......    .+|+.+....  .....+|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~--~~~daSI   82 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP--SRKDGSI   82 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC--CcCeeEE
Confidence            4456678899999999996542    34799943               22221100    1243333111  2346889


Q ss_pred             EEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       269 ~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      .|.+++.+|.|.|+|.+.|..+.  ......+.|.|
T Consensus        83 ~I~nv~~sD~G~Y~C~v~n~p~~--~~~~~~~~l~v  116 (116)
T cd05879          83 VIHNLDYTDNGTFTCDVKNPPDI--VGKSSQVTLYV  116 (116)
T ss_pred             EEccCCcccCEEEEEEEEcCCCc--CCceeEEEEEC
Confidence            99999999999999999998765  23446666654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.79  E-value=9.7e-08  Score=61.07  Aligned_cols=78  Identities=21%  Similarity=0.290  Sum_probs=52.8

Q ss_pred             EEEEEEEecC-CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        223 LRLECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       223 ~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                      ++|.|.+.|. |.+.|+|++++..+......  .....++....++|.|..-..+|...|+|.|.|..=.   .....+.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~---~~~~~~~   76 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVK---DLQTQRY   76 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccC---CceeeEE
Confidence            6899999665 88899999999988643111  1111223335688888766666666899999998733   2556666


Q ss_pred             EEEc
Q psy15235        302 VRVK  305 (323)
Q Consensus       302 l~v~  305 (323)
                      |.|.
T Consensus        77 L~V~   80 (82)
T cd05883          77 LEVQ   80 (82)
T ss_pred             EEEE
Confidence            6664

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.78  E-value=4.4e-08  Score=65.18  Aligned_cols=72  Identities=21%  Similarity=0.315  Sum_probs=51.3

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .+...|. .++..|+.|+|+|.... +   ...+.|+++|......   ..........+.|.+++.+|+|.|+|.. .+
T Consensus         4 ~L~a~p~-~vV~~G~~VtL~C~~~~-~---~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~-~~   74 (91)
T cd05751           4 SLWAEPS-SVVPLGKPVTLRCQGPY-G---AVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYY-RS   74 (91)
T ss_pred             EEEecCC-CccCCCCcEEEEEecCC-C---CCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEE-EC
Confidence            3444443 35778999999998863 3   4689999998754320   0011145678999999999999999999 55


Q ss_pred             C
Q psy15235        189 K  189 (323)
Q Consensus       189 ~  189 (323)
                      .
T Consensus        75 ~   75 (91)
T cd05751          75 G   75 (91)
T ss_pred             C
Confidence            4

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.78  E-value=3.1e-08  Score=65.78  Aligned_cols=68  Identities=19%  Similarity=0.364  Sum_probs=48.8

Q ss_pred             EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc----------cccccCcEE-------eceeEEEEeeeecCCCee
Q psy15235        118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE----------ATELSGRLT-------QSKDSITIRKTTVDDAGQ  180 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~----------~~~~~~~~~-------~~~~~l~i~~~~~~d~G~  180 (323)
                      .+..|++|+|.|.+.+.+   .+.+.|++++.....          ......++.       .....|+|.+++.+|+|.
T Consensus         3 ~~~~G~~VtL~C~~s~~~---~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           3 LGKKGDTAELPCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             EeeCCCCEEEEEEeCCCC---CcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence            467899999999998877   789999976632110          001122222       234679999999999999


Q ss_pred             EEEEEEcCC
Q psy15235        181 YSCRLIDPK  189 (323)
Q Consensus       181 y~C~~~~~~  189 (323)
                      |.|.+ .+.
T Consensus        80 Y~C~v-~~~   87 (94)
T cd07690          80 YICEV-EDK   87 (94)
T ss_pred             EEEEE-CCc
Confidence            99999 665

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.78  E-value=1.3e-07  Score=65.48  Aligned_cols=84  Identities=19%  Similarity=0.310  Sum_probs=55.1

Q ss_pred             eEEecCCcEEEEEEeecCCCC-CCceEEE-E--------------ECCeecc-ccccccCcEE------eceeEEEEeee
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPG-DDYQIVW-Y--------------KGNKSIT-EATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~-~~~~i~W-~--------------~~~~~~~-~~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ..+..|+.++|.|......+. +...|+| +              ++|.... ....+.+|+.      ....++.|.++
T Consensus         8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv   87 (116)
T cd05879           8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL   87 (116)
T ss_pred             EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence            456689999999998764321 2579999 3              2333222 1123445664      35678999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeee
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADF  201 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l  201 (323)
                      +.+|+|.|+|.+ .+..........+.|
T Consensus        88 ~~sD~G~Y~C~v-~n~p~~~~~~~~~~l  114 (116)
T cd05879          88 DYTDNGTFTCDV-KNPPDIVGKSSQVTL  114 (116)
T ss_pred             CcccCEEEEEEE-EcCCCcCCceeEEEE
Confidence            999999999999 666444333344433

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.76  E-value=1.3e-07  Score=65.16  Aligned_cols=81  Identities=23%  Similarity=0.384  Sum_probs=55.8

Q ss_pred             eCCeEEEEEEEecCC------CCcEEEEECCee-------e-ec---------cCCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        219 EGEKLRLECLVVGSP------PPTVEWRIGNDT-------Y-FR---------SQGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p------~~~~~W~~~~~~-------~-~~---------~~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      .|++++|.|.....|      ...+.|++....       + ..         -.+|+.+..  . ......|.|.+++.
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~-~~~~~sL~I~~v~~   77 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR--A-HDLDASLVITDLRL   77 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC--C-CCCcEEEEEccCCh
Confidence            488999999986553      346999985310       1 10         012333321  1 11357899999999


Q ss_pred             CCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        276 ADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       276 ~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      +|+|.|.|.+.+..+.    ....+.|.|.+
T Consensus        78 ~DsG~Y~C~v~~~~~~----~~~~~~l~v~~  104 (106)
T cd05877          78 EDYGRYRCEVIDGLED----ESVVVALRLRG  104 (106)
T ss_pred             HHCEEEEEEEEecccc----eEEEEEEEEEE
Confidence            9999999999987744    88888888875

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.76  E-value=4.7e-08  Score=64.58  Aligned_cols=69  Identities=16%  Similarity=0.238  Sum_probs=54.1

Q ss_pred             CceeEEecCCcEEEEEE-eecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCe-eEEEEEEcCC
Q psy15235        114 PKYKVFEYRVPFTLKCN-VTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAG-QYSCRLIDPK  189 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~-~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G-~y~C~~~~~~  189 (323)
                      .+...+.+|+.+.|.|. ..+.|   .+.|.|++++.....   .+.|+. ..++.|.|.++...|+| .|.|.| .+.
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P---~P~i~W~~~~~~~i~---~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a-~~~   81 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAV---PLRIYWMNSDLLHIT---QDERVSMGQNGNLYFANVEEQDSHPDYICHA-HFP   81 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCC---CCEEEEECCCCcccc---ccccEEECCCceEEEEEEehhhCCCCeEEEE-Ecc
Confidence            35566889999999997 46666   799999987644222   155665 56699999999999999 899999 665

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.75  E-value=8.1e-08  Score=62.16  Aligned_cols=64  Identities=19%  Similarity=0.285  Sum_probs=52.2

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      ...+..|+++.|.|...+. .+.+.|++++..+.. +.++...        ..-|.|..++.+|+|.|.|.+.-
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~-~~r~~~~--------~~GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA-QFSYRVG--------TDGLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCC-CcceEEe--------CCCCEEEECCHhhCEEEEEEEec
Confidence            4568899999999999755 779999999998864 3455544        34588999999999999999883

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.75  E-value=2.2e-07  Score=63.96  Aligned_cols=83  Identities=25%  Similarity=0.446  Sum_probs=55.9

Q ss_pred             eCCeEEEEEEEecCC------------CCcEEEEECC--e--e-eeccC----------CeeeeecCCCCCCcceeEEEe
Q psy15235        219 EGEKLRLECLVVGSP------------PPTVEWRIGN--D--T-YFRSQ----------GRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p------------~~~~~W~~~~--~--~-~~~~~----------~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      .|++++|.|......            .+.+.|++-.  .  . +....          +|+.+...+ ......+|+|.
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~-~~~~~asL~I~   79 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP-AIPSDATLEIT   79 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC-CCCCCcEEEEe
Confidence            488999999996432            3579999842  1  1 11111          244333100 12247899999


Q ss_pred             ecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      +++.+|+|.|+|.+.+..    ......+.|.|.+
T Consensus        80 nl~~sDsG~Y~C~V~~g~----~~~~~~v~l~v~g  110 (112)
T cd05900          80 ELRSNDSGTYRCEVMHGI----EDNYDTVEVQVKG  110 (112)
T ss_pred             ecccccCEEEEEEEecCC----CCceeEEEEEEEe
Confidence            999999999999999776    3477788888875

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>smart00409 IG Immunoglobulin

Probab=98.75  E-value=2.4e-07  Score=60.77  Aligned_cols=65  Identities=32%  Similarity=0.643  Sum_probs=51.6

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..+..|+++.|.|.+.+.+   ...+.|+++ +..+..    ..++.    .....|.|.++..+|+|.|.|.+ .+.
T Consensus         4 ~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v-~~~   73 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLAE----SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAA-TNS   73 (86)
T ss_pred             EEEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcCC----CCcEEEEEcCCeeEEEEEeeccccCeEEEEEE-EcC
Confidence            4467899999999998885   689999998 776653    34443    22468999999999999999999 544

>smart00410 IG_like Immunoglobulin like

Probab=98.75  E-value=2.4e-07  Score=60.77  Aligned_cols=65  Identities=32%  Similarity=0.643  Sum_probs=51.6

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..+..|+++.|.|.+.+.+   ...+.|+++ +..+..    ..++.    .....|.|.++..+|+|.|.|.+ .+.
T Consensus         4 ~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v-~~~   73 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLAE----SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAA-TNS   73 (86)
T ss_pred             EEEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcCC----CCcEEEEEcCCeeEEEEEeeccccCeEEEEEE-EcC
Confidence            4467899999999998885   689999998 776653    34443    22468999999999999999999 544

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.72  E-value=5.5e-08  Score=65.12  Aligned_cols=75  Identities=24%  Similarity=0.335  Sum_probs=52.9

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeec-----------------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFR-----------------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY  282 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~  282 (323)
                      |++++|.|.....+...+.|+++......                 -.+|+.+.       ....|+|.+++.+|+|.|+
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-------~~~sL~I~~l~~~DsG~Y~   73 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-------PNGSLLIQNLTKEDSGTYT   73 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-------CCceEEEccCCchhcEEEE
Confidence            78999999987655558999997643210                 01222222       3588999999999999999


Q ss_pred             EEEeecccCCCCCceeEEEEEE
Q psy15235        283 CHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       283 C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |.+....|.   .....+.|+|
T Consensus        74 c~v~~~~~~---~~~~~~~l~v   92 (92)
T cd05741          74 LQIISTNGV---TENAKFFLRV   92 (92)
T ss_pred             EEEEcCCCc---EEEEEEEEEC
Confidence            999998743   3556665553

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.72  E-value=2.5e-07  Score=59.17  Aligned_cols=78  Identities=23%  Similarity=0.423  Sum_probs=53.4

Q ss_pred             cEEEEEEeecCCCCCCceEEEEECCeeccccccc---cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeee
Q psy15235        124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL---SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQAD  200 (323)
Q Consensus       124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~  200 (323)
                      .+.|.|.+.+..|  ...|+||+++.++......   ..+-......|.|..-..+|...|+|+| .|.... .......
T Consensus         1 ~~~L~C~s~gSkP--~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a-~~~~l~-~~~~~~~   76 (82)
T cd05883           1 EIELNCTAMASKP--AATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLV-DHPAVK-DLQTQRY   76 (82)
T ss_pred             CEEEEEEecCCCC--CCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEE-cCcccC-CceeeEE
Confidence            3689999999877  6799999999988652110   1111145567888766666777999999 777533 3566666


Q ss_pred             eEEEe
Q psy15235        201 FDVIM  205 (323)
Q Consensus       201 l~v~~  205 (323)
                      |.|++
T Consensus        77 L~V~y   81 (82)
T cd05883          77 LEVQY   81 (82)
T ss_pred             EEEEE
Confidence            66654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.72  E-value=2.8e-07  Score=64.45  Aligned_cols=79  Identities=18%  Similarity=0.389  Sum_probs=50.9

Q ss_pred             eeceeEEeeCCeEEEEEEEecCC----CCcEEEEECCe------ee-ec--------cC----CeeeeecCCCCCCccee
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSP----PPTVEWRIGND------TY-FR--------SQ----GRIKLSEHPEKGTANSV  267 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~~~~------~~-~~--------~~----~~~~~~~~~~~~~~~~~  267 (323)
                      .|....+.+|++++|.|......    ...+.|++...      .+ ..        ..    .|+.+.  .........
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~s   81 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWV--GNPSRKDAS   81 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEe--cCCcCCeeE
Confidence            45566788999999999995432    13599986321      11 00        01    111111  011123578


Q ss_pred             EEEeecCcCCCeEEEEEEeecccC
Q psy15235        268 LQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       268 L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      |+|.+++.+|+|.|.|.+.|....
T Consensus        82 L~I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          82 IVIHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             EEEeeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999999998754

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.71  E-value=2.2e-07  Score=63.93  Aligned_cols=84  Identities=21%  Similarity=0.393  Sum_probs=56.1

Q ss_pred             eCCeEEEEEEEecCC------CCcEEEEECC-----e-ee-eccCCeeeeecC-------CCCCCcceeEEEeecCcCCC
Q psy15235        219 EGEKLRLECLVVGSP------PPTVEWRIGN-----D-TY-FRSQGRIKLSEH-------PEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p------~~~~~W~~~~-----~-~~-~~~~~~~~~~~~-------~~~~~~~~~L~i~~v~~~d~  278 (323)
                      .|++++|.|.....+      ...+.|++..     . .+ ...+........       .........|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999997653      4579999862     1 11 111111111000       01122578999999999999


Q ss_pred             eEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        279 GNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       279 G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      |.|.|.+.+..+    .....+.|.|.+
T Consensus        81 G~Y~C~v~~~~~----~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIE----DEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCC----ceEEEEEEEEEE
Confidence            999999998763    478888888875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.71  E-value=7.3e-08  Score=66.76  Aligned_cols=76  Identities=24%  Similarity=0.393  Sum_probs=54.7

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCee--e----e-------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT--Y----F-------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~--~----~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      +....+.+|++++|.|.+.+.+...+.|++....  .    .       ...+++.+....  ......|+|.+++.+|+
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK--SRKSSSLHISAAQLSDS   82 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc--cCCEEEEEECCCCHHHC
Confidence            3456788999999999998777778999984321  0    0       123445444211  12468899999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+.+..
T Consensus        83 G~Y~C~~~~~~   93 (109)
T cd04983          83 AVYFCALSESG   93 (109)
T ss_pred             EEEEEEEecCC
Confidence            99999999764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.69  E-value=3.2e-07  Score=63.26  Aligned_cols=83  Identities=23%  Similarity=0.420  Sum_probs=56.6

Q ss_pred             eCCeEEEEEEEecCC----------CCcEEEEECC--eeee---c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        219 EGEKLRLECLVVGSP----------PPTVEWRIGN--DTYF---R----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p----------~~~~~W~~~~--~~~~---~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      .|++++|.|.....+          ...+.|++..  ....   .          -.+|+.+.... .......|+|.++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~-~~~~~asL~I~~l   79 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYP-ENRGDASLEISRL   79 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCC-CCCCcEEEEECCC
Confidence            488999999996543          2469999852  1110   0          11233332111 1124688999999


Q ss_pred             CcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        274 TMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      +.+|+|.|.|.+....    ...+..+.|.|.+
T Consensus        80 ~~sD~G~Y~C~v~~~~----~~~~~~v~l~V~g  108 (110)
T cd05878          80 RSSDSGVYRCEVMHGI----EDEQDTVPLEVTG  108 (110)
T ss_pred             ChhhCEEEEEEEEeCC----CcceEEEEEEEEE
Confidence            9999999999999865    3488899998876

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.68  E-value=2.2e-07  Score=60.42  Aligned_cols=66  Identities=21%  Similarity=0.364  Sum_probs=45.1

Q ss_pred             EEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       223 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +.|.|.+.+ +|.+.+.|++++..+.... . .... +.++  ...+.|.+.....++.+.|+|.|.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~-~~~~-~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-L-KEED-ENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-e-eEec-CCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999965 5888999999998875322 1 1111 1111  23456777666666677999999998855

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.66  E-value=1.7e-07  Score=62.69  Aligned_cols=76  Identities=18%  Similarity=0.164  Sum_probs=53.9

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG  285 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a  285 (323)
                      +|.+...+...+.+|++++|.|.... +...+.|+++|......   ....  .........+.|..++.+|+|.|.|..
T Consensus         1 kP~l~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---~~~~--~~~~~~~a~f~I~~~~~~~~G~Y~C~~   74 (94)
T cd05711           1 KPFLSAHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL---HLYE--KHHGGFQASFPLGPVTPAHAGTYRCYG   74 (94)
T ss_pred             CCEEEecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce---eccc--ccCCeEEEEEEecCCCcccCEEEEEEE
Confidence            46667677788899999999998854 44579999988653210   0000  011224678999999999999999998


Q ss_pred             ee
Q psy15235        286 NN  287 (323)
Q Consensus       286 ~n  287 (323)
                      ..
T Consensus        75 ~~   76 (94)
T cd05711          75 SY   76 (94)
T ss_pred             EC
Confidence            63

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.66  E-value=3.6e-07  Score=62.14  Aligned_cols=81  Identities=23%  Similarity=0.329  Sum_probs=52.3

Q ss_pred             CCeEEEEEEEecCCC---CcEEEEECCe--eee---c-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeE
Q psy15235        220 GEKLRLECLVVGSPP---PTVEWRIGND--TYF---R-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGN  280 (323)
Q Consensus       220 g~~~~l~C~~~g~p~---~~~~W~~~~~--~~~---~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  280 (323)
                      |++++|.|...+...   ..+.|++...  .+.   .           -.+|+.+... .......+|+|.+++.+|+|.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~sL~I~~v~~~D~G~   79 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKD-AIAEGSVALRIHNVRASDEGL   79 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecc-cccCCcEEEEEEcCChhhCEE
Confidence            678999999853322   2588988542  110   0           0123332210 011235789999999999999


Q ss_pred             EEEEEeecccCCCCCceeEEEEEEc
Q psy15235        281 YYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       281 y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      |+|.+.|..+.    .+..+.|.|.
T Consensus        80 Y~C~v~~~~~~----~~~~i~l~v~  100 (100)
T cd05713          80 YTCFFQSDGFY----EEATVELKVA  100 (100)
T ss_pred             EEEEEecCCcE----EEEEEEEEEC
Confidence            99999997743    7788888763

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.65  E-value=2.8e-07  Score=60.52  Aligned_cols=66  Identities=23%  Similarity=0.392  Sum_probs=45.3

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC-cE-----EeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-RL-----TQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~-----~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |+++.|.|.+.+.+.. ...+.|..++........... +.     ......|.|.+++.+|+|.|+|.+ .|.
T Consensus         1 Ge~~~L~C~~~~~~~~-~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a-~n~   72 (86)
T cd05862           1 GEKLVLNCTARTELNV-GIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTA-SSG   72 (86)
T ss_pred             CCcEEEEEEEEeCCCC-cEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEE-eec
Confidence            7899999999865321 468899887654321000010 11     134578999999999999999999 676

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.65  E-value=1.2e-07  Score=63.39  Aligned_cols=64  Identities=28%  Similarity=0.427  Sum_probs=47.1

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccc--------------cccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------------ATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------------~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      |++|+|.|......   ...|.|++.......              ...+.+|+. ..+.+|.|.+++.+|+|.|.|.+ 
T Consensus         1 G~~VtL~c~~~~~~---~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v-   76 (92)
T cd05741           1 GESVTLPVSNLPEN---LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQI-   76 (92)
T ss_pred             CCcEEEEcccCCCC---CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEE-
Confidence            78999999887655   679999986532211              123345554 45589999999999999999999 


Q ss_pred             cCC
Q psy15235        187 DPK  189 (323)
Q Consensus       187 ~~~  189 (323)
                      ...
T Consensus        77 ~~~   79 (92)
T cd05741          77 IST   79 (92)
T ss_pred             EcC
Confidence            444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.64  E-value=1.6e-07  Score=63.80  Aligned_cols=73  Identities=23%  Similarity=0.251  Sum_probs=51.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe-----eccc----------cccccCcEE-eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-----SITE----------ATELSGRLT-QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~-----~~~~----------~~~~~~~~~-~~~~~l~i~~~~~~  176 (323)
                      ++....+.+|+.+.|.|......   ...+.|||+..     .+..          .+.+++|.. ..+.+|.|++++..
T Consensus         4 e~~p~~~~~G~~V~L~v~~~p~~---~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~   80 (105)
T cd05774           4 ELVPPQVAEGENVLLLVHNLPEN---LLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK   80 (105)
T ss_pred             eccCCcccCCCCEEEEecCCCCC---ceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc
Confidence            44445677899999999754333   56999999632     1111          112345544 45679999999999


Q ss_pred             CCeeEEEEEEcCC
Q psy15235        177 DAGQYSCRLIDPK  189 (323)
Q Consensus       177 d~G~y~C~~~~~~  189 (323)
                      |+|.|+|.+ .+.
T Consensus        81 D~G~Y~~~v-~~~   92 (105)
T cd05774          81 DTGFYTLQT-ITT   92 (105)
T ss_pred             cCEEEEEEE-EeC
Confidence            999999999 555

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.61  E-value=2.7e-07  Score=62.64  Aligned_cols=80  Identities=24%  Similarity=0.240  Sum_probs=54.1

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCee-----ee---c----------cCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDT-----YF---R----------SQGRIKLSEHPEKGTANSVLQIDEATMA  276 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~-----~~---~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~  276 (323)
                      ..+.+|+++.|.|.....+...+.|+++...     +.   .          ..+|..+.       .+++|.|.+++.+
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~-------~ngSL~I~~v~~~   80 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY-------PNGSLLIQNVTQK   80 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe-------CCCcEEEecCCcc
Confidence            4567899999998664333337999996321     10   0          11222222       3578999999999


Q ss_pred             CCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        277 DRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       277 d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |+|.|+|.+.+....   .....+.|.|
T Consensus        81 D~G~Y~~~v~~~~~~---~~~~~v~l~V  105 (105)
T cd05774          81 DTGFYTLQTITTNFQ---VEQATVHLQV  105 (105)
T ss_pred             cCEEEEEEEEeCCcc---EEEEEEEEEC
Confidence            999999999998732   3666666654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.61  E-value=9.5e-07  Score=61.52  Aligned_cols=79  Identities=19%  Similarity=0.405  Sum_probs=50.9

Q ss_pred             eeceeEEeeCCeEEEEEEEecCC----CCcEEEEEC----Cee--ee---c-----cC----CeeeeecCCCCCCcceeE
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSP----PPTVEWRIG----NDT--YF---R-----SQ----GRIKLSEHPEKGTANSVL  268 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~~----~~~--~~---~-----~~----~~~~~~~~~~~~~~~~~L  268 (323)
                      .+....+.+|++++|.|.....+    ...+.|++.    +..  +.   .     ..    .|+.+.  .........|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~--~~~~~~~~sL   81 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWD--GNIMRRDASI   81 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEe--cCCcCCceEE
Confidence            34566788999999999986443    235999752    111  10   0     01    122111  0111235779


Q ss_pred             EEeecCcCCCeEEEEEEeecccC
Q psy15235        269 QIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       269 ~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +|.+++.+|+|.|.|.+.|..+.
T Consensus        82 ~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          82 LIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             EEeeCChhhCEEEEEEEEeCCCC
Confidence            99999999999999999998754

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.60  E-value=6.9e-07  Score=58.10  Aligned_cols=67  Identities=18%  Similarity=0.364  Sum_probs=45.4

Q ss_pred             EEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       223 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +.|+|.+.| +|.+.|+|+++|..+.....  .......++  ...+.|.+.....+|...|+|.|.|....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~--~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT--SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce--eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            689999966 48889999999988754221  122112211  12366777666666778999999998854

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.59  E-value=4.1e-07  Score=63.04  Aligned_cols=74  Identities=19%  Similarity=0.247  Sum_probs=52.3

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCe--eee---------------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGND--TYF---------------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      |....+.+|++++|.|.+.+ +.+.+.||+...  .+.               ...+++....  .. .....|+|.+++
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~--~~-~~~~~L~I~~~~   80 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASR--PS-LTRSSLTIKSAE   80 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEEC--cC-CCccEEEECCCC
Confidence            44567889999999999977 667899998532  111               0123333331  11 136789999999


Q ss_pred             cCCCeEEEEEEeecc
Q psy15235        275 MADRGNYYCHGNNVA  289 (323)
Q Consensus       275 ~~d~G~y~C~a~n~~  289 (323)
                      .+|+|.|.|.+.+..
T Consensus        81 ~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          81 PEDSAVYLCASSLGG   95 (110)
T ss_pred             hhhCEEEEEEeeCCC
Confidence            999999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.58  E-value=1.6e-07  Score=63.31  Aligned_cols=72  Identities=19%  Similarity=0.339  Sum_probs=50.3

Q ss_pred             eeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        218 IEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ..|+.+.|.|.+.|. |. +.++|+++|..+.............++ ....+.|.+.....+|.|.|+|.|.|..
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~   85 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES   85 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence            368899999999887 64 589999999887643221111111111 1345667787777779999999999987

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.57  E-value=5.7e-07  Score=61.13  Aligned_cols=67  Identities=16%  Similarity=0.453  Sum_probs=44.1

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCe--eccc-----------cccccCcEE-------eceeEEEEeeeecCCCeeE
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNK--SITE-----------ATELSGRLT-------QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~--~~~~-----------~~~~~~~~~-------~~~~~l~i~~~~~~d~G~y  181 (323)
                      |++++|.|............+.|++...  .+..           ...+.+|+.       ....+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            7899999998643221145889988542  1100           112234543       2346899999999999999


Q ss_pred             EEEEEcCC
Q psy15235        182 SCRLIDPK  189 (323)
Q Consensus       182 ~C~~~~~~  189 (323)
                      +|.+ .+.
T Consensus        81 ~C~v-~~~   87 (100)
T cd05713          81 TCFF-QSD   87 (100)
T ss_pred             EEEE-ecC
Confidence            9999 554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.55  E-value=1e-06  Score=56.31  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=49.1

Q ss_pred             ceeEEeeCCeEEEEEEEecCC--CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        213 ETLTVIEGEKLRLECLVVGSP--PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ....+..|++++|+|.....+  .+.++|...+........           ....+|.+.+++..|+|.++|.+....
T Consensus         7 ~~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~~   74 (88)
T cd07694           7 SSDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVNS   74 (88)
T ss_pred             CCCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEECc
Confidence            345677899999999995543  458999976554321100           147889999999999999999998654

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.54  E-value=1.4e-06  Score=59.98  Aligned_cols=80  Identities=19%  Similarity=0.325  Sum_probs=51.4

Q ss_pred             cCCcEEEEEEeecCCCC---------CCceEEEEEC--Cee---cc-------ccccccCcEE-------eceeEEEEee
Q psy15235        121 YRVPFTLKCNVTSPPPG---------DDYQIVWYKG--NKS---IT-------EATELSGRLT-------QSKDSITIRK  172 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~---------~~~~i~W~~~--~~~---~~-------~~~~~~~~~~-------~~~~~l~i~~  172 (323)
                      .|++|+|.|......+.         ..+.|.|+|-  +..   +.       ....+.+|+.       ....+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            38999999988653311         0359999983  211   10       0223445665       2578999999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      ++.+|+|.|+|.+ .+.  .......+.|.|
T Consensus        81 l~~sDsG~Y~C~V-~~g--~~~~~~~v~l~v  108 (112)
T cd05900          81 LRSNDSGTYRCEV-MHG--IEDNYDTVEVQV  108 (112)
T ss_pred             cccccCEEEEEEE-ecC--CCCceeEEEEEE
Confidence            9999999999999 543  233444444444

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.54  E-value=9.2e-07  Score=61.00  Aligned_cols=81  Identities=25%  Similarity=0.433  Sum_probs=53.8

Q ss_pred             cCCcEEEEEEeecCCCC-------CCceEEEEEC--Ceecc----------ccccccCcEE-------eceeEEEEeeee
Q psy15235        121 YRVPFTLKCNVTSPPPG-------DDYQIVWYKG--NKSIT----------EATELSGRLT-------QSKDSITIRKTT  174 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~-------~~~~i~W~~~--~~~~~----------~~~~~~~~~~-------~~~~~l~i~~~~  174 (323)
                      .|+.|+|.|......+.       ....|.|++.  +....          ....+.+|+.       ....+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            38999999998764421       1368999984  22111          1223445554       245789999999


Q ss_pred             cCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      .+|+|.|.|.+ ...  .......+.|.|.
T Consensus        81 ~sD~G~Y~C~v-~~~--~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEV-MHG--IEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEE-EeC--CCcceEEEEEEEE
Confidence            99999999999 544  3345666666654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.53  E-value=1.1e-06  Score=59.55  Aligned_cols=77  Identities=21%  Similarity=0.378  Sum_probs=50.1

Q ss_pred             CeEEEEEEEecCC---CCcEEEEECCee----e--ec----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235        221 EKLRLECLVVGSP---PPTVEWRIGNDT----Y--FR----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNY  281 (323)
Q Consensus       221 ~~~~l~C~~~g~p---~~~~~W~~~~~~----~--~~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y  281 (323)
                      ++++|.|.....+   ...+.|++....    +  ..          ...|..+..  . ......|+|.+++.+|+|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~--~-~~~~~sL~I~~v~~~D~G~Y   77 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLN--S-SLEDATISISNLRLEDEGNY   77 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeC--C-CCCceEEEEccCCcccCEEE
Confidence            4689999997654   336999985531    0  00          011222221  0 11467899999999999999


Q ss_pred             EEEEee-cccCCCCCceeEEEEEE
Q psy15235        282 YCHGNN-VATRNSQPNEAFVYVRV  304 (323)
Q Consensus       282 ~C~a~n-~~g~~~~~~~~~~~l~v  304 (323)
                      .|.+.+ ..|    +....+.|.|
T Consensus        78 ~C~v~~~~~g----~~~~~~~l~V   97 (98)
T cd05718          78 ICEFATFPQG----NRQKVTTLTV   97 (98)
T ss_pred             EEEEEeCCCC----cEEEEEEEEe
Confidence            999986 443    4777777765

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.53  E-value=5.1e-07  Score=60.82  Aligned_cols=78  Identities=18%  Similarity=0.260  Sum_probs=54.1

Q ss_pred             eeCCeEEEEEEEec-CCCCcEEEEECCeeeeccC----------------CeeeeecCCCCCCcceeEEEeecCcCCCeE
Q psy15235        218 IEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQ----------------GRIKLSEHPEKGTANSVLQIDEATMADRGN  280 (323)
Q Consensus       218 ~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  280 (323)
                      ..|++++|.|.... .....+.|++....+....                .|+.+.      .....|+|.+++.+|+|.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~------~~~~sL~I~~~~~~DsG~   75 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFS------QNDYSLQISNLKMEDAGS   75 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEec------CCceeEEECCCchHHCEE
Confidence            36999999998854 3345799998754322111                111111      135889999999999999


Q ss_pred             EEEEEeecccCCCCCceeEEEEEE
Q psy15235        281 YYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       281 y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |.|.+.+..|.   .....+.|+|
T Consensus        76 Y~c~v~~~~~~---~~~~~f~L~v   96 (97)
T cd05775          76 YRAEINTKNGV---TITKEFTLHI   96 (97)
T ss_pred             EEEEEEcCCCC---eEEEEEEEEe
Confidence            99999998854   3566777665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.52  E-value=4.3e-07  Score=62.43  Aligned_cols=73  Identities=23%  Similarity=0.370  Sum_probs=51.1

Q ss_pred             EEeeCCeEEEEEEEecC-CCCcEEEEECCee-----ee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        216 TVIEGEKLRLECLVVGS-PPPTVEWRIGNDT-----YF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      .+.+|++++|.|.+.+. +...+.|++....     +.           ....++.+....  ......|+|.+++.+|+
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~sL~I~~v~~~D~   79 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS--SKSSFTLTISSLQPEDS   79 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEec--cCCEEEEEECCCCHHHC
Confidence            46789999999999866 5668999984321     10           012233333111  11467899999999999


Q ss_pred             eEEEEEEeeccc
Q psy15235        279 GNYYCHGNNVAT  290 (323)
Q Consensus       279 G~y~C~a~n~~g  290 (323)
                      |.|.|.+.+..+
T Consensus        80 G~Y~C~v~~~~~   91 (105)
T cd00099          80 AVYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEEecCCC
Confidence            999999998773

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.51  E-value=2.2e-06  Score=56.88  Aligned_cols=80  Identities=10%  Similarity=0.186  Sum_probs=56.9

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCce-EEEEECCeeccccccccCcEE-------eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQ-IVWYKGNKSITEATELSGRLT-------QSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~-i~W~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      ...+..|+.+.|.|.+.++|   .++ +.|.+++..+.....  ..+.       .-...|.+..++.++.|.|+|.| .
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP---~p~~~~W~~~~~~l~~~~~--~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a-~   85 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYP---KPEHQQWIYMNRTLTNTSD--HYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLV-S   85 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCC---CCeeeEEEcCCcccCcccc--ceeEEeccCceEEEEEEEEeecChhhCcEEEEEE-E
Confidence            44588899999999999999   565 999998876544211  1111       13478999999999999999999 7


Q ss_pred             CCCCCCCCceeeeeEE
Q psy15235        188 PKSTNTTPLAQADFDV  203 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v  203 (323)
                      |.  ....+.++.|.|
T Consensus        86 N~--~~~~s~tF~l~v   99 (101)
T cd05860          86 NS--DASASVTFNVYV   99 (101)
T ss_pred             CC--CCeEEEEEEEEE
Confidence            76  223344444443

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.51  E-value=3.9e-07  Score=61.36  Aligned_cols=65  Identities=22%  Similarity=0.310  Sum_probs=46.1

Q ss_pred             cCCcEEEEEEeec-CCCCCCceEEEEECCeeccc-------------cccccCcEE--eceeEEEEeeeecCCCeeEEEE
Q psy15235        121 YRVPFTLKCNVTS-PPPGDDYQIVWYKGNKSITE-------------ATELSGRLT--QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       121 ~g~~v~l~C~~~~-~~~~~~~~i~W~~~~~~~~~-------------~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .|++|+|.|.... ..   ...+.|++....+..             ...+.+|+.  ....+|+|.+++.+|+|.|.|.
T Consensus         3 ~G~sVtL~c~~~~~~~---~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~   79 (97)
T cd05775           3 LGGSVTLPLNIPDGTE---IESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAE   79 (97)
T ss_pred             cCCeEEEeCCCCCCcE---EEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEE
Confidence            5999999998765 33   568999986432211             112233443  3458899999999999999999


Q ss_pred             EEcCC
Q psy15235        185 LIDPK  189 (323)
Q Consensus       185 ~~~~~  189 (323)
                      + ...
T Consensus        80 v-~~~   83 (97)
T cd05775          80 I-NTK   83 (97)
T ss_pred             E-EcC
Confidence            9 444

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.50  E-value=2.4e-06  Score=59.71  Aligned_cols=75  Identities=25%  Similarity=0.445  Sum_probs=48.3

Q ss_pred             CceeEEecCCcEEEEEEeecCCCC-CCceEEEEECCe------ecc----------ccccccCcEE------eceeEEEE
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYKGNK------SIT----------EATELSGRLT------QSKDSITI  170 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~~------~~~----------~~~~~~~~~~------~~~~~l~i  170 (323)
                      |....+..|+.++|.|......+. ....+.|++...      .+.          ....+..|+.      ....+|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            445567789999999988654311 035799986321      110          0112223332      22478999


Q ss_pred             eeeecCCCeeEEEEEEcCC
Q psy15235        171 RKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+++.+|+|.|.|.+ .+.
T Consensus        85 ~~v~~~D~G~Y~C~v-~~~  102 (116)
T cd05715          85 HNLQFTDNGTYTCDV-KNP  102 (116)
T ss_pred             eeCCcccCEEEEEEE-EeC
Confidence            999999999999999 555

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.49  E-value=7.9e-07  Score=61.12  Aligned_cols=73  Identities=22%  Similarity=0.340  Sum_probs=50.1

Q ss_pred             eceeEEeeCCeEEEEEEEecCC-CCcEEEEECCe--e---eec--------cCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSP-PPTVEWRIGND--T---YFR--------SQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~--~---~~~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      |....+.+|++++|.|.+.+.. ...+.|++...  .   +..        ...++...  .  ......|+|.+++.+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~--~--~~~~~~L~I~~~~~~D   82 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS--G--SGTDFTLTISRVEPED   82 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe--c--cCCEEEEEECCCChHH
Confidence            4456788999999999997665 56799997431  1   110        01233322  1  1135679999999999


Q ss_pred             CeEEEEEEeec
Q psy15235        278 RGNYYCHGNNV  288 (323)
Q Consensus       278 ~G~y~C~a~n~  288 (323)
                      +|.|.|.+.+.
T Consensus        83 sg~Y~Ca~~~~   93 (106)
T cd04980          83 AAVYYCQQYGT   93 (106)
T ss_pred             CEEEEEEEeCC
Confidence            99999999764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.48  E-value=1.3e-06  Score=58.39  Aligned_cols=76  Identities=20%  Similarity=0.354  Sum_probs=49.7

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccccc--CcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS--GRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+....+.+|+.++|+|.+.+..|.+...|.|||++..+.......  ........++.+..-..+|...|+|+| ...
T Consensus         7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A-~l~   84 (100)
T cd05755           7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCET-ELD   84 (100)
T ss_pred             ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEE-Eec
Confidence            4444456789999999999998775334589999998886521111  011134456666655444555999999 554

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.48  E-value=3.1e-06  Score=58.93  Aligned_cols=76  Identities=22%  Similarity=0.385  Sum_probs=48.4

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCC-CceEEEEEC----Cee--cc---------ccccccCcEE------eceeEEEEe
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGD-DYQIVWYKG----NKS--IT---------EATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~~----~~~--~~---------~~~~~~~~~~------~~~~~l~i~  171 (323)
                      +....+.+|++++|.|......+.. ...|.|++.    +..  +.         ....+..|+.      ....+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            3445577899999999876533211 247999741    211  10         0112223332      245679999


Q ss_pred             eeecCCCeeEEEEEEcCCC
Q psy15235        172 KTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~  190 (323)
                      +++.+|+|.|.|.+ .+..
T Consensus        85 ~v~~~D~G~Y~C~v-~~~~  102 (115)
T cd05880          85 QLQPTDNGTYTCQV-KNPP  102 (115)
T ss_pred             eCChhhCEEEEEEE-EeCC
Confidence            99999999999999 6553

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.48  E-value=1.5e-06  Score=58.58  Aligned_cols=78  Identities=27%  Similarity=0.357  Sum_probs=49.5

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCe----ecc-----c----cccccCcEE-----eceeEEEEeeeecCCCeeEEE
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNK----SIT-----E----ATELSGRLT-----QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~----~~~-----~----~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      |++++|.|.......  ...+.|+|...    .+.     .    ...+.+|+.     ....+|.|.+++.+|+|.|.|
T Consensus         1 G~~vtL~C~~~~~~~--~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C   78 (97)
T cd05846           1 GGNVTLSCNLTLPEE--VLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKC   78 (97)
T ss_pred             CCcEEEEEEeCCCCe--eEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEE
Confidence            789999998765431  34799998432    111     0    112233332     356789999999999999999


Q ss_pred             EEEcCCCCCCCCceeeeeEE
Q psy15235        184 RLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       184 ~~~~~~~~~~~~~~~~~l~v  203 (323)
                      .+...+  .+.......|+|
T Consensus        79 ~~~~~p--~g~~~~~~~L~v   96 (97)
T cd05846          79 IFNTFP--DGSKSGTMCLTV   96 (97)
T ss_pred             EEEeCC--CCCeeeEEEEEE
Confidence            995454  333444555544

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.47  E-value=3e-06  Score=57.39  Aligned_cols=77  Identities=27%  Similarity=0.339  Sum_probs=50.1

Q ss_pred             eEEEEEEEecCC---CCcEEEEECCee-----ee--c----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235        222 KLRLECLVVGSP---PPTVEWRIGNDT-----YF--R----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNY  281 (323)
Q Consensus       222 ~~~l~C~~~g~p---~~~~~W~~~~~~-----~~--~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y  281 (323)
                      +++|.|.....+   ...+.|++....     +.  .          -.+|..+.  .........|+|.+++.+|+|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~--~~~~~~~~sL~I~nv~~sD~GtY   79 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFE--TPNPIADGALILRNAVQADEGKY   79 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEe--CCCCCCceEEEEecCccccceEE
Confidence            588999986443   237999983211     10  0          01233333  11122467899999999999999


Q ss_pred             EEEEee-cccCCCCCceeEEEEEE
Q psy15235        282 YCHGNN-VATRNSQPNEAFVYVRV  304 (323)
Q Consensus       282 ~C~a~n-~~g~~~~~~~~~~~l~v  304 (323)
                      .|.+.+ +.|.    .+..+.|.|
T Consensus        80 ~C~v~~~p~g~----~~~~~~L~V   99 (100)
T cd05888          80 KCRVITFPAGN----FEAELVLTV   99 (100)
T ss_pred             EEEEEeCCCCC----eeeEEEEEe
Confidence            999998 4543    578888876

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.47  E-value=9.2e-07  Score=61.20  Aligned_cols=73  Identities=22%  Similarity=0.439  Sum_probs=52.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe---ec---cc----cccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK---SI---TE----ATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~---~~---~~----~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|.+.+..   ...+.||+...   +.   ..    .....+|+.      .....|.|.+++.+
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   80 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTST---FYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS   80 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCC---ccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence            45566788999999999998765   67999998432   11   00    011244554      24678999999999


Q ss_pred             CCeeEEEEEEcCC
Q psy15235        177 DAGQYSCRLIDPK  189 (323)
Q Consensus       177 d~G~y~C~~~~~~  189 (323)
                      |+|.|.|.+ .+.
T Consensus        81 DsG~Y~C~~-~~~   92 (109)
T cd04983          81 DSAVYFCAL-SES   92 (109)
T ss_pred             HCEEEEEEE-ecC
Confidence            999999999 443

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.46  E-value=9e-07  Score=61.99  Aligned_cols=75  Identities=19%  Similarity=0.372  Sum_probs=51.2

Q ss_pred             eceeEEeeCCeEEEEEEEec--CCCCcEEEEECC--eeee------c----------cCCeeeeecCCCCCCcceeEEEe
Q psy15235        212 VETLTVIEGEKLRLECLVVG--SPPPTVEWRIGN--DTYF------R----------SQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g--~p~~~~~W~~~~--~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      +....+.+|++++|.|.+.+  .+.+.+.|++..  ....      .          ...++.+..  ........|+|.
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~   82 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARK--DVGKSTSTLTIQ   82 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEE--ECCCCEEEEEEE
Confidence            34556788999999999976  567789999842  1110      0          123333331  111136789999


Q ss_pred             ecCcCCCeEEEEEEeec
Q psy15235        272 EATMADRGNYYCHGNNV  288 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~n~  288 (323)
                      +++.+|+|.|.|.+...
T Consensus        83 ~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          83 NLEKEDSATYYCAYWES   99 (116)
T ss_pred             ECCHHHCEEEEEEEecC
Confidence            99999999999999753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.46  E-value=1.3e-06  Score=58.38  Aligned_cols=67  Identities=19%  Similarity=0.182  Sum_probs=46.7

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      ..++..|++|+|.|.... .   ...+.|||+|...................+.|.+++.+|+|.|.|...
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~---~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-R---FDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCccCCCCeEEEEEecCC-C---CCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            345678999999998766 3   458999998865432000000001345688999999999999999973

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.45  E-value=1.8e-06  Score=59.41  Aligned_cols=80  Identities=18%  Similarity=0.293  Sum_probs=50.3

Q ss_pred             cCCcEEEEEEeecCCC---CCCceEEEEECCe---e-----ccc------cccccCcEE-----eceeEEEEeeeecCCC
Q psy15235        121 YRVPFTLKCNVTSPPP---GDDYQIVWYKGNK---S-----ITE------ATELSGRLT-----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~---~~~~~i~W~~~~~---~-----~~~------~~~~~~~~~-----~~~~~l~i~~~~~~d~  178 (323)
                      .|+.++|.|.....++   .....|.|+|...   +     +..      ...+.+|+.     ....+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            4899999998866420   1146899998531   1     000      012334544     2246899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      |.|.|.+ .+.  .......+.|.|
T Consensus        81 G~Y~C~v-~~~--~~~~~~~~~l~v  102 (106)
T cd05877          81 GRYRCEV-IDG--LEDESVVVALRL  102 (106)
T ss_pred             EEEEEEE-Eec--ccceEEEEEEEE
Confidence            9999999 554  333444444444

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.45  E-value=5.5e-07  Score=57.49  Aligned_cols=56  Identities=30%  Similarity=0.564  Sum_probs=40.0

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEE
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      ++|.|.+.+.++  .+.++|+ +......  ............|.|.++..+|.|.|+|.|
T Consensus        18 ~~l~C~~~~~~~--~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a   73 (75)
T PF13927_consen   18 VTLTCSAEGGPP--PPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIA   73 (75)
T ss_dssp             EEEEEEESSEES--SEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEE
T ss_pred             EEEEEEEccccC--CeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEE
Confidence            999999999876  6899999 1111111  001111156778999999999999999999

...

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.45  E-value=1.8e-06  Score=57.20  Aligned_cols=68  Identities=26%  Similarity=0.524  Sum_probs=45.3

Q ss_pred             CCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        220 GEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       220 g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      |+.+.+.|.+ .++|++.+.|+.++..+..........  ...+  ...++|.+..-..++...++|.|.|..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~   84 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSS--PDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA   84 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEE--TTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeec--cCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence            6799999988 678999999999998772111111111  1221  234678887655556668999999987

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.44  E-value=2.6e-06  Score=58.38  Aligned_cols=82  Identities=24%  Similarity=0.418  Sum_probs=55.6

Q ss_pred             CCeEEEEEEEecCC-------CCcEEEEECC-----eee--e-----------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        220 GEKLRLECLVVGSP-------PPTVEWRIGN-----DTY--F-----------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       220 g~~~~l~C~~~g~p-------~~~~~W~~~~-----~~~--~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      |++++|.|...-.|       .+.+.|.+..     ...  .           .-.+|..+...+ ......+|.|.+++
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~-~~~~~asL~i~nv~   80 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYP-KNRYNASLVLSRLR   80 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCC-CCCceEEEEECCCC
Confidence            78899999975332       3579999741     111  0           112344443211 11246899999999


Q ss_pred             cCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       275 ~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      .+|+|.|.|.+....    ...+..+.|.|.+
T Consensus        81 ~~D~G~Y~C~v~~g~----~~~~~~v~L~V~g  108 (110)
T cd05902          81 YSDSGTYRCEVVLGI----NDEQDTVPLEVTG  108 (110)
T ss_pred             HHHCEEEEEEEEECC----cccEEEEEEEEEE
Confidence            999999999999955    4588899998875

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.44  E-value=1.8e-06  Score=59.39  Aligned_cols=81  Identities=19%  Similarity=0.287  Sum_probs=51.6

Q ss_pred             cCCcEEEEEEeecCCC---CCCceEEEEECC---e-e--cc--c------cccccCcEE-----eceeEEEEeeeecCCC
Q psy15235        121 YRVPFTLKCNVTSPPP---GDDYQIVWYKGN---K-S--IT--E------ATELSGRLT-----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~---~~~~~i~W~~~~---~-~--~~--~------~~~~~~~~~-----~~~~~l~i~~~~~~d~  178 (323)
                      .|+.|+|.|.....++   .....|.|++..   . .  +.  .      ...+..++.     ....+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            4899999999876531   115799999862   1 1  10  0      011222322     3568899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      |.|.|.+ .+.  .......+.|.|.
T Consensus        81 G~Y~C~v-~~~--~~~~~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEV-IDG--IEDEQDTVELEVR  103 (106)
T ss_pred             EEEEEEE-EcC--CCceEEEEEEEEE
Confidence            9999999 554  2334555555554

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.44  E-value=2.3e-06  Score=56.91  Aligned_cols=77  Identities=19%  Similarity=0.330  Sum_probs=50.9

Q ss_pred             CcEEEEEEeecCCCCCCceEEEEECC----eeccc---------cccccCcEE-----eceeEEEEeeeecCCCeeEEEE
Q psy15235        123 VPFTLKCNVTSPPPGDDYQIVWYKGN----KSITE---------ATELSGRLT-----QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       123 ~~v~l~C~~~~~~~~~~~~i~W~~~~----~~~~~---------~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      +.++|.|.......  ..+|+|.|..    ..+..         ...+.+|..     ....+|.|.+++.+|+|.|.|.
T Consensus         1 ~~vtL~C~~~~~~~--~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~   78 (96)
T cd05887           1 KNVTLKCRIQVNET--ITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICK   78 (96)
T ss_pred             CCEEEEEEecCCCc--EEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEE
Confidence            46899999875443  5699998742    12211         112334444     3467899999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEE
Q psy15235        185 LIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v  203 (323)
                      +...+  .+..++...|+|
T Consensus        79 v~tfP--~G~~~~~~~l~~   95 (96)
T cd05887          79 AVTFP--LGNTQSSTTVTV   95 (96)
T ss_pred             EEeCC--CCCeeEEEEEEE
Confidence            95555  344555656555

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.43  E-value=2.6e-06  Score=55.33  Aligned_cols=67  Identities=16%  Similarity=0.310  Sum_probs=44.4

Q ss_pred             EEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        223 LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       223 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ++|+|.+.| +|.+.++|++||..+..... .... .+.++  ...+.|.+.....++...|+|.|.|..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~-~~~~-~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKY-LKEE-DANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCcee-eEee-CCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999966 57778999999998753211 1111 11111  23567777765566667899999998744

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.41  E-value=3.6e-06  Score=54.68  Aligned_cols=63  Identities=22%  Similarity=0.470  Sum_probs=39.7

Q ss_pred             cEEEEEEeecCCCCCCceEEEEECCeecccccc-----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .+.|.|.+.+..|  .+.|.|++++..+.....     .++.+ .....|.+.....++.+.|+|.+ .+..
T Consensus         1 ~~~L~C~~~~~~P--~~~v~W~~~~~~l~~~~~~~~~~~~~~~-~~~s~l~~~~~~~d~g~~~~C~v-~h~~   68 (82)
T cd05761           1 EVELTCTSSGSKP--AATIRWFKGDKELKGVKLKEEDENGKTF-TVTSSLRFQVDREDDGAPIICRV-DHPA   68 (82)
T ss_pred             CEEEEEEecCcCc--CCeEEEEECCEEccCceeeEecCCCCEE-EEEEEEEEEcchhhCCCEEEEEE-eChh
Confidence            3689999988755  579999999988754110     00011 12334445444455667999999 6663

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.40  E-value=2.8e-06  Score=57.48  Aligned_cols=79  Identities=23%  Similarity=0.439  Sum_probs=48.8

Q ss_pred             CcEEEEEEeecCCCCCCceEEEEECCee----ccc---------cccccCcEE--e---ceeEEEEeeeecCCCeeEEEE
Q psy15235        123 VPFTLKCNVTSPPPGDDYQIVWYKGNKS----ITE---------ATELSGRLT--Q---SKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~----~~~---------~~~~~~~~~--~---~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      ++|+|.|......+.....|.|+|....    +..         ...+..|..  .   ....|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4789999987654211458999995421    100         011233333  1   467899999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEE
Q psy15235        185 LIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v  203 (323)
                      +....  .+.......|.|
T Consensus        81 v~~~~--~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFP--QGNRQKVTTLTV   97 (98)
T ss_pred             EEeCC--CCcEEEEEEEEe
Confidence            94333  233444445444

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.39  E-value=3.6e-06  Score=61.81  Aligned_cols=84  Identities=21%  Similarity=0.381  Sum_probs=58.3

Q ss_pred             EEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccc--------cccccCcEE-----eceeEEEEeeeecCCCeeEEE
Q psy15235        118 VFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITE--------ATELSGRLT-----QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~--------~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      .+.+|++++|.|... +..   ..+++|+|....+..        ...+.+|+.     .....|+|.+++.+|+|.|.|
T Consensus        26 ~V~ege~VtLsCs~t~s~~---~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         26 TVSEHVNVKISCNKTSSFN---SILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEcCCCCEEEEEecCCCCc---cceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            367899999999975 434   578999996433221        223334553     356789999999999999999


Q ss_pred             EEEcCCCCCC-CCceeeeeEEEec
Q psy15235        184 RLIDPKSTNT-TPLAQADFDVIMK  206 (323)
Q Consensus       184 ~~~~~~~~~~-~~~~~~~l~v~~~  206 (323)
                      ..-.-+  .+ ..+....|+|...
T Consensus       103 ~F~tfp--~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        103 IFNTLL--SKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEEecC--CCCCceeEEEEEEEch
Confidence            993332  33 5666777777653

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.39  E-value=9e-06  Score=55.88  Aligned_cols=39  Identities=23%  Similarity=0.327  Sum_probs=34.1

Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ...+|.|.+++.+|+|.|.|.+.+...    .....+.|.|.+
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~----~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIE----DTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCc----ccEEEEEEEEEE
Confidence            468999999999999999999998873    488888888875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.38  E-value=5.7e-06  Score=60.78  Aligned_cols=91  Identities=21%  Similarity=0.375  Sum_probs=62.9

Q ss_pred             eeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeee----------cc-CCeeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235        214 TLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYF----------RS-QGRIKLSEHPEKGTANSVLQIDEATMADRGNY  281 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y  281 (323)
                      ...+.+|++++|.|... +...+.+.|++....+.          .. .+|+...+   .....+.|+|.+++.+|+|.|
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS---~s~~~StItIknVt~sDeGcY  100 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLS---KSFNESTILIKNVSLKDNGCY  100 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEec---cCCCcceEEEEeCChhhCeEE
Confidence            45678999999999984 55567899999643221          00 12333210   111468899999999999999


Q ss_pred             EEEEeecccCCCC-CceeEEEEEEcceecC
Q psy15235        282 YCHGNNVATRNSQ-PNEAFVYVRVKGKSFG  310 (323)
Q Consensus       282 ~C~a~n~~g~~~~-~~~~~~~l~v~~~~~~  310 (323)
                      .|...--. .  | +.+..+.|.|......
T Consensus       101 ~C~F~tfp-~--G~~~~gt~CLtVt~~~~~  127 (189)
T PHA02987        101 TCIFNTLL-S--KNNEKGVVCLNVTTDSYT  127 (189)
T ss_pred             EEEEEecC-C--CCCceeEEEEEEEchhhc
Confidence            99988643 1  3 5788888888876443

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.37  E-value=2.2e-06  Score=57.93  Aligned_cols=69  Identities=22%  Similarity=0.348  Sum_probs=47.5

Q ss_pred             EEeeCCeEEEEEEEecC--CCCcEEEEECCe--ee---e--------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeE
Q psy15235        216 TVIEGEKLRLECLVVGS--PPPTVEWRIGND--TY---F--------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGN  280 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~--p~~~~~W~~~~~--~~---~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  280 (323)
                      .+.+|++++|.|...+.  ....+.|++...  ..   .        ...+++...  ...  ....|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~--~~~--~~~~L~I~~~~~~Dsg~   77 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS--KSG--NTASLTISGAQTEDEAD   77 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE--ccC--CEEEEEECCCChhhCEE
Confidence            46789999999999654  455799998432  11   0        011233332  111  45789999999999999


Q ss_pred             EEEEEeec
Q psy15235        281 YYCHGNNV  288 (323)
Q Consensus       281 y~C~a~n~  288 (323)
                      |.|.+.+.
T Consensus        78 Y~C~~~~~   85 (98)
T cd04984          78 YYCQVWDS   85 (98)
T ss_pred             EEEEEccC
Confidence            99999864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.37  E-value=2e-06  Score=59.57  Aligned_cols=71  Identities=23%  Similarity=0.489  Sum_probs=50.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe--eccc-----------c-ccccCcEE-----eceeEEEEeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK--SITE-----------A-TELSGRLT-----QSKDSITIRKT  173 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~--~~~~-----------~-~~~~~~~~-----~~~~~l~i~~~  173 (323)
                      .|....+.+|++++|.|...+ .   ...+.|||...  ....           . ....+++.     .....|.|.++
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~---~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~   79 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-G---HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA   79 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-C---CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence            456677889999999999987 4   57899998432  1110           0 11134443     23568999999


Q ss_pred             ecCCCeeEEEEEEcC
Q psy15235        174 TVDDAGQYSCRLIDP  188 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~  188 (323)
                      +.+|+|.|.|.+ ..
T Consensus        80 ~~~Dsg~Y~Ca~-~~   93 (110)
T cd05899          80 EPEDSAVYLCAS-SL   93 (110)
T ss_pred             ChhhCEEEEEEe-eC
Confidence            999999999999 44

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.36  E-value=7.2e-06  Score=55.27  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=51.0

Q ss_pred             CCeEEEEEEEecCCCC-cEEEEECCee----ee---c---------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235        220 GEKLRLECLVVGSPPP-TVEWRIGNDT----YF---R---------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY  282 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~-~~~W~~~~~~----~~---~---------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~  282 (323)
                      |++++|.|........ .+.|++....    +.   .         -.++.....   .......|+|.+++.+|+|.|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~sL~I~nv~~~D~G~Y~   77 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS---LGLNSTSITIWNVTLEDEGCYK   77 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC---CCCCccEEEEeCCceeeeEEEE
Confidence            7899999997544333 6999985321    10   0         011222211   1124688999999999999999


Q ss_pred             EEEeecccCCCCCceeEEEEEE
Q psy15235        283 CHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       283 C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |.+...-   .++....+.|.|
T Consensus        78 C~~~~~p---~g~~~~~~~L~v   96 (97)
T cd05846          78 CIFNTFP---DGSKSGTMCLTV   96 (97)
T ss_pred             EEEEeCC---CCCeeeEEEEEE
Confidence            9987543   144777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.33  E-value=1.1e-05  Score=52.50  Aligned_cols=62  Identities=23%  Similarity=0.470  Sum_probs=39.8

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeecccccc-----cc-CcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-----LS-GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-----~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ++|.|.+.+..|  ...|+|+++|..+.....     .. ..+ .....|.+.....++...|+|.+ .+..
T Consensus         2 ~~LtC~a~g~~P--~~~ItW~k~g~~l~~~~~~~~~~~~~~t~-~~~s~l~~~~~~~d~g~~~tC~v-~h~~   69 (83)
T cd07705           2 AKLRCTSSGSKP--AANIKWRKGDQELEGAPTSVLEDGNGKTF-TVSSSVEFQVTREDDGAEITCSV-GHES   69 (83)
T ss_pred             EEEEEEecCccC--CCEeEEEECCEECCCcceeEEECCCCCEE-EEEEEEEEEecchhCCCEEEEEE-ECcc
Confidence            689999999766  569999999988754110     00 001 11234445444556667999999 6663

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.32  E-value=6.1e-06  Score=53.55  Aligned_cols=62  Identities=24%  Similarity=0.504  Sum_probs=41.4

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ++|.|.+.++.|  ...|+|+|+|..+.....      .++.+ .....|.+..-..++...|+|++ .+..
T Consensus         2 ~~LtC~a~gf~P--~~~itW~kng~~l~~~~~~~~~~~~~~t~-~~~s~L~~~~~~~d~g~~ytC~v-~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKP--AADIRWFKNDKEIKDVKYLKEEDANRKTF-TVSSTLDFRVDRSDDGVAIICRV-DHES   69 (83)
T ss_pred             EEEEEEeCCccC--CCEEEEEECCEECcCceeeEeeCCCCCEE-EEEEEEEEEcccccCCCEEEEEE-echh
Confidence            689999999776  589999999998754111      01111 23345666544455666999999 6663

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.29  E-value=1e-05  Score=54.08  Aligned_cols=74  Identities=23%  Similarity=0.276  Sum_probs=49.9

Q ss_pred             eeEEeeCCeEEEEEEEec-CCCCc--EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe-EEEEEEeecc
Q psy15235        214 TLTVIEGEKLRLECLVVG-SPPPT--VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVA  289 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g-~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~  289 (323)
                      ...+.+|+.++|.|.+.| .|.+.  +.||+++..+....  +... .........+|++.. ..+|.| .|+|.|.+..
T Consensus        10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~--~~~~-~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l~l   85 (100)
T cd05755          10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQP--FGDN-TKSPVNAPATITITV-DREDHGANFSCETELDL   85 (100)
T ss_pred             CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccce--eccc-cCCCceeEEEEEEec-chhhCCcEEEEEEEecc
Confidence            345678999999999965 57775  79999999886421  1110 011112456777764 455555 8999999988


Q ss_pred             cC
Q psy15235        290 TR  291 (323)
Q Consensus       290 g~  291 (323)
                      +.
T Consensus        86 ~~   87 (100)
T cd05755          86 RP   87 (100)
T ss_pred             Cc
Confidence            65

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.29  E-value=8e-06  Score=56.86  Aligned_cols=88  Identities=25%  Similarity=0.352  Sum_probs=56.5

Q ss_pred             eceeEEeeCCeEEEEEEEe-cCCCCcEEEEECCe-----eee-c------------cCCeeeeecCCCCCCcceeEEEee
Q psy15235        212 VETLTVIEGEKLRLECLVV-GSPPPTVEWRIGND-----TYF-R------------SQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~-----~~~-~------------~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      +....+.+|+++.|.|... ......+.|++...     .+. .            ..++..+..  +......+|+|.+
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~sL~i~~   85 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSG--NGSQNNFSLTIKN   85 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEE--ETTTTEEEEEESS
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeee--cccCCeEEEEECC
Confidence            4456788999999999998 44556799998332     111 0            011222221  1112357899999


Q ss_pred             cCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       273 v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      ++.+|+|.|.|.+.....   ......+.|+|
T Consensus        86 l~~~DsG~Y~C~v~~~~~---~~~~~~~~L~V  114 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTSNE---QSFGNGTKLTV  114 (114)
T ss_dssp             ESGGGEEEEEEEEEESSE---EEEEEEEEEEE
T ss_pred             CCcCcCEEEEEEEEECCC---CEECCcEEEEC
Confidence            999999999999998731   23445555544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.29  E-value=4.3e-06  Score=58.50  Aligned_cols=75  Identities=20%  Similarity=0.343  Sum_probs=51.1

Q ss_pred             eceeEEeeCCeEEEEEEEecC-CCCcEEEEECC--eeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGS-PPPTVEWRIGN--DTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      +....+..|++++|.|..... ....+.|++..  ..+.           ...+|+.+..  ........|+|.+++.+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF--QKAQKSISLTISALQLED   83 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE--eccCCEEEEEECCCCHHH
Confidence            445668899999999998653 45579999832  1110           1124444431  111136789999999999


Q ss_pred             CeEEEEEEeec
Q psy15235        278 RGNYYCHGNNV  288 (323)
Q Consensus       278 ~G~y~C~a~n~  288 (323)
                      +|.|.|.+...
T Consensus        84 sg~Y~C~~~~~   94 (116)
T cd07706          84 SAKYFCALSTL   94 (116)
T ss_pred             CEEEEEEEECC
Confidence            99999999964

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.29  E-value=3.1e-06  Score=57.22  Aligned_cols=72  Identities=17%  Similarity=0.301  Sum_probs=49.8

Q ss_pred             EEeeCCeEEEEEEEec-CCCCcEEEEECCee-----e-------eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235        216 TVIEGEKLRLECLVVG-SPPPTVEWRIGNDT-----Y-------FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY  282 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~  282 (323)
                      .+.+|++++|.|.... .+...+.|++....     +       ....+++.+....  ......|+|.+++.+|+|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~   80 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP--DNGVFTVTLNQLRKEDAGWYW   80 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecC--CCCEEEEEEcCCCHHHCEEEE
Confidence            5778999999999864 34557999985421     1       0112344443111  124678999999999999999


Q ss_pred             EEEeecc
Q psy15235        283 CHGNNVA  289 (323)
Q Consensus       283 C~a~n~~  289 (323)
                      |.+....
T Consensus        81 C~~~~~~   87 (98)
T cd05716          81 CGVGDDG   87 (98)
T ss_pred             EEcccCC
Confidence            9998754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.29  E-value=1.2e-05  Score=53.96  Aligned_cols=78  Identities=21%  Similarity=0.405  Sum_probs=48.6

Q ss_pred             cEEEEEEeecCCCC-CCceEEEEECC--e--eccc---------cccccCcEE-----eceeEEEEeeeecCCCeeEEEE
Q psy15235        124 PFTLKCNVTSPPPG-DDYQIVWYKGN--K--SITE---------ATELSGRLT-----QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       124 ~v~l~C~~~~~~~~-~~~~i~W~~~~--~--~~~~---------~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .++|.|......|. ...+|+|.+..  .  .+..         ...+.+|+.     ....+|.|.+++.+|+|.|.|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            58899998753321 13379998731  1  1110         122345554     2357899999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEE
Q psy15235        185 LIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v  203 (323)
                      +...+.+  ..+..+.|.|
T Consensus        82 v~t~P~g--~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTG--NRESQLNLTV   98 (99)
T ss_pred             EEeCCCC--CeEEEEEEEE
Confidence            9432432  3555556555

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.28  E-value=5.7e-06  Score=56.69  Aligned_cols=80  Identities=23%  Similarity=0.403  Sum_probs=52.0

Q ss_pred             CCcEEEEEEeecCCC----CCCceEEEEECC-----eecc----------ccccccCcEE-------eceeEEEEeeeec
Q psy15235        122 RVPFTLKCNVTSPPP----GDDYQIVWYKGN-----KSIT----------EATELSGRLT-------QSKDSITIRKTTV  175 (323)
Q Consensus       122 g~~v~l~C~~~~~~~----~~~~~i~W~~~~-----~~~~----------~~~~~~~~~~-------~~~~~l~i~~~~~  175 (323)
                      |++++|.|...-.+.    ...+.|.|.+..     ....          ....+.+|..       ....+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            788999999653221    014799998741     1110          1234455554       2467999999999


Q ss_pred             CCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        176 DDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       176 ~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      +|+|.|.|.+ ...  .......+.|.|.
T Consensus        82 ~D~G~Y~C~v-~~g--~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEV-VLG--INDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEE-EEC--CcccEEEEEEEEE
Confidence            9999999999 443  3445666666654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.27  E-value=4.4e-06  Score=56.13  Aligned_cols=67  Identities=19%  Similarity=0.390  Sum_probs=45.1

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .|+.++|.|.+.++.|. ...|+|+++|..+...........      .....|.+.....++.+.|+|.+ .+.
T Consensus        12 ~~~~~~L~C~a~g~~P~-~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v-~h~   84 (95)
T cd00098          12 LGGSVTLTCLATGFYPP-DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVV-THE   84 (95)
T ss_pred             cCCCeEEEEEEeeEECC-CcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEE-EeC
Confidence            58899999999998543 479999999988865211000111      22334555555556899999999 665

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.27  E-value=6.8e-06  Score=57.53  Aligned_cols=71  Identities=18%  Similarity=0.337  Sum_probs=50.4

Q ss_pred             CCceeEEecCCcEEEEEEeec--CCCCCCceEEEEEC--Ceec----cc---------cccccCcEE----e--ceeEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTS--PPPGDDYQIVWYKG--NKSI----TE---------ATELSGRLT----Q--SKDSIT  169 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~--~~~~~~~~i~W~~~--~~~~----~~---------~~~~~~~~~----~--~~~~l~  169 (323)
                      .|....+.+|++++|.|.+.+  .+   ...+.|||.  +...    ..         ......|+.    .  ....|+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~---~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   80 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFS---TTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLT   80 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCcc---ccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEE
Confidence            355666888999999999877  44   579999984  2211    00         011234554    2  467899


Q ss_pred             EeeeecCCCeeEEEEEE
Q psy15235        170 IRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       170 i~~~~~~d~G~y~C~~~  186 (323)
                      |.+++.+|+|.|.|.+.
T Consensus        81 I~~~~~~Dsg~Y~C~~~   97 (116)
T cd04982          81 IQNLEKEDSATYYCAYW   97 (116)
T ss_pred             EEECCHHHCEEEEEEEe
Confidence            99999999999999993

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.26  E-value=1.2e-05  Score=53.36  Aligned_cols=70  Identities=20%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             EeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        217 VIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ...++..+|.|.+.|+ |. ..++|.+||..+.............++. ...+.|.+.   .++...|+|.+.+..
T Consensus        12 ~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~   84 (94)
T cd05767          12 VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG   84 (94)
T ss_pred             ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence            3446678999999885 54 3799999998864321111111111111 123455554   345568999999976

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.26  E-value=3.8e-06  Score=57.77  Aligned_cols=71  Identities=17%  Similarity=0.354  Sum_probs=46.5

Q ss_pred             EEeeCCeEEEEEEEecCC-CCcEEEEECCee---------ee-cc-----------CCeeeeecCCCCCCcceeEEEeec
Q psy15235        216 TVIEGEKLRLECLVVGSP-PPTVEWRIGNDT---------YF-RS-----------QGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~---------~~-~~-----------~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      .+.+|++++|.|.+.+.. ...+.|++....         +. ..           ..++....  ........|+|.++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~~~   79 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV--TSDSSRYRLHINRV   79 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE--ECCCCEEEEEECCC
Confidence            467899999999996543 447999984321         00 00           12332211  11113567999999


Q ss_pred             CcCCCeEEEEEEeec
Q psy15235        274 TMADRGNYYCHGNNV  288 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~  288 (323)
                      +.+|+|.|.|...+.
T Consensus        80 ~~~Dsg~YyCa~~~~   94 (107)
T cd07700          80 KPEDSGTYFCMTVGS   94 (107)
T ss_pred             CHHHCEEEEEeEcCC
Confidence            999999999998743

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.25  E-value=2.1e-05  Score=52.35  Aligned_cols=77  Identities=17%  Similarity=0.338  Sum_probs=50.4

Q ss_pred             eEEEEEEEecCCC-CcEEEEECCe----eee------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        222 KLRLECLVVGSPP-PTVEWRIGND----TYF------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       222 ~~~l~C~~~g~p~-~~~~W~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +++|.|.....+. ..++|.+...    .+.            .-.+|..+..   ......+|.|.+++.+|.|.|+|.
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~---~~~~d~sl~i~nv~~~D~G~Y~C~   78 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN---YSLLDATIMLENVGFSDIGVYICK   78 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC---CCCCccEEEEeCCCccccEEEEEE
Confidence            6889999864433 3699987421    111            0112333321   112478999999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEE
Q psy15235        285 GNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v  304 (323)
                      +.+.-   .|+.++++.|+|
T Consensus        79 v~tfP---~G~~~~~~~l~~   95 (96)
T cd05887          79 AVTFP---LGNTQSSTTVTV   95 (96)
T ss_pred             EEeCC---CCCeeEEEEEEE
Confidence            87643   145788888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.24  E-value=4.4e-06  Score=57.34  Aligned_cols=67  Identities=24%  Similarity=0.484  Sum_probs=48.3

Q ss_pred             EecCCcEEEEEEeecC-CCCCCceEEEEECCe--e---ccc--------cccccCcEE----e--ceeEEEEeeeecCCC
Q psy15235        119 FEYRVPFTLKCNVTSP-PPGDDYQIVWYKGNK--S---ITE--------ATELSGRLT----Q--SKDSITIRKTTVDDA  178 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~-~~~~~~~i~W~~~~~--~---~~~--------~~~~~~~~~----~--~~~~l~i~~~~~~d~  178 (323)
                      +.+|+.++|.|.+... .   ...+.|++...  .   +..        .....+++.    .  ....|+|.+++.+|+
T Consensus         3 v~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~   79 (105)
T cd00099           3 VSEGESVTLSCTYSGSFS---SYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS   79 (105)
T ss_pred             ecCCCCEEEEEEEeCCcC---cceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence            5689999999999876 4   67999998432  1   100        112344554    1  467899999999999


Q ss_pred             eeEEEEEEcCC
Q psy15235        179 GQYSCRLIDPK  189 (323)
Q Consensus       179 G~y~C~~~~~~  189 (323)
                      |.|.|.+ .+.
T Consensus        80 G~Y~C~v-~~~   89 (105)
T cd00099          80 AVYYCAV-SLS   89 (105)
T ss_pred             EEEEEEE-ecC
Confidence            9999999 544

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.24  E-value=2.5e-05  Score=52.52  Aligned_cols=37  Identities=16%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             cceeEEEeecCcCCCeEEEEEEee-cccCCCCCceeEEEEEE
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNN-VATRNSQPNEAFVYVRV  304 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n-~~g~~~~~~~~~~~l~v  304 (323)
                      ....|+|.+++.+|.|.|+|.+.+ +.|    +.+..+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g----~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTG----NRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCC----CeEEEEEEEE
Confidence            458899999999999999999999 564    4778888776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.24  E-value=1.4e-05  Score=52.91  Aligned_cols=68  Identities=19%  Similarity=0.200  Sum_probs=41.8

Q ss_pred             EeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCC--cceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        217 VIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGT--ANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      +..|+..+|.|.+.|+ |.. .++|.+||..+. ......... ..++.  ..+.|.   +..++...|+|.+.+..
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p-~~d~tyq~~s~l~---~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSF-SKDWTFYLLKSTE---FTPTKGDEYACRVRHNS   83 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEE-CCCCCEEEEEEEE---ECCCCCCeEEEEEEECC
Confidence            3456778999999885 543 699999998875 221111111 11111  123333   44566778999999965

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.22  E-value=6.1e-06  Score=57.48  Aligned_cols=71  Identities=28%  Similarity=0.493  Sum_probs=49.6

Q ss_pred             CCceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCe-----ecc-c---------cccccCcEE------eceeEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNK-----SIT-E---------ATELSGRLT------QSKDSITI  170 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~-----~~~-~---------~~~~~~~~~------~~~~~l~i  170 (323)
                      .|....+.+|+++.|.|... ...   ...+.|++...     .+. .         ...+.+++.      ....+|.|
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~---~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i   83 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSN---QSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI   83 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSS---GSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCC---cceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence            35556688999999999998 333   67999998322     111 0         122233332      23568999


Q ss_pred             eeeecCCCeeEEEEEE
Q psy15235        171 RKTTVDDAGQYSCRLI  186 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~  186 (323)
                      .+++.+|+|.|.|.+.
T Consensus        84 ~~l~~~DsG~Y~C~v~   99 (114)
T PF07686_consen   84 KNLQPSDSGTYFCQVS   99 (114)
T ss_dssp             SSESGGGEEEEEEEEE
T ss_pred             CCCCcCcCEEEEEEEE
Confidence            9999999999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.22  E-value=6.5e-06  Score=56.54  Aligned_cols=71  Identities=18%  Similarity=0.395  Sum_probs=48.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc-c----ccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE-A----TELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~-~----~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|.+.+...  ...+.|||..  ..   +.. .    .....++.    .....|.|.+++.+|+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~--~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           6 SPATLSVSPGESATISCKASQSVS--SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             CCCcEEECCCCCEEEEEEECCCCC--CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            566677899999999999876432  3589999842  11   110 0    00123444    2446799999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|.+
T Consensus        84 g~Y~Ca~   90 (106)
T cd04980          84 AVYYCQQ   90 (106)
T ss_pred             EEEEEEE
Confidence            9999998

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.22  E-value=2.2e-05  Score=53.20  Aligned_cols=78  Identities=23%  Similarity=0.402  Sum_probs=47.4

Q ss_pred             cEEEEEEeecCCCCCCceEEEEECCe-----eccc---------cccccCcEE------eceeEEEEeeeecCCCeeEEE
Q psy15235        124 PFTLKCNVTSPPPGDDYQIVWYKGNK-----SITE---------ATELSGRLT------QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       124 ~v~l~C~~~~~~~~~~~~i~W~~~~~-----~~~~---------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      +++|.|......+.....|.|+|...     .+..         ...+.+|..      ....+|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            58999988653321135899998321     1110         112234443      236789999999999999999


Q ss_pred             EEEcCCCCCCCCceeeeeEE
Q psy15235        184 RLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       184 ~~~~~~~~~~~~~~~~~l~v  203 (323)
                      .+...+.+.  .+....|.|
T Consensus        82 ~v~~~p~g~--~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGN--FEAELVLTV   99 (100)
T ss_pred             EEEeCCCCC--eeeEEEEEe
Confidence            994334332  355555544

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.21  E-value=1.4e-05  Score=53.30  Aligned_cols=67  Identities=16%  Similarity=0.311  Sum_probs=40.3

Q ss_pred             CCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        220 GEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       220 g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ++.++|.|.+.|+ |+. .++|++++................++. ...+.|.+..   .+.+.|+|.+.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCC
Confidence            6789999999886 554 799999986332111111111001111 1234455443   47789999999977

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.21  E-value=2.3e-05  Score=53.88  Aligned_cols=80  Identities=28%  Similarity=0.437  Sum_probs=51.4

Q ss_pred             CCcEEEEEEeecCCC--------CCCceEEEEEC-----Ce-----ec--------cccccccCcEE-------eceeEE
Q psy15235        122 RVPFTLKCNVTSPPP--------GDDYQIVWYKG-----NK-----SI--------TEATELSGRLT-------QSKDSI  168 (323)
Q Consensus       122 g~~v~l~C~~~~~~~--------~~~~~i~W~~~-----~~-----~~--------~~~~~~~~~~~-------~~~~~l  168 (323)
                      |.+++|.|...-.|.        .+...|+|++-     +.     .+        .....+.+|..       ....+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            678999999874331        12569999873     11     11        00133445554       246899


Q ss_pred             EEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       169 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      .|.+++..|+|.|.|.+ ...  .......+.|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V-~~g--~~~~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEV-MHG--IEDTQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEE-EEC--CcccEEEEEEEEE
Confidence            99999999999999999 444  3344555555553

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.21  E-value=1.7e-05  Score=54.51  Aligned_cols=71  Identities=20%  Similarity=0.277  Sum_probs=44.8

Q ss_pred             EEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCC--CCcceeEEEeecCcCCCe-EEEEEEeecc
Q psy15235        216 TVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEK--GTANSVLQIDEATMADRG-NYYCHGNNVA  289 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G-~y~C~a~n~~  289 (323)
                      ....|+.++|.|.+.|+ |. ..++|++||..+..........  .++  ....+.|.+.. ...|.| .|+|.+.+..
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~--~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPE--GDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeC--CCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            34568889999999775 64 4899999999875322211111  111  12345566664 334444 5999999976

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.20  E-value=1.3e-05  Score=51.12  Aligned_cols=68  Identities=24%  Similarity=0.350  Sum_probs=42.9

Q ss_pred             eEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        222 KLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       222 ~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++|.|.+.|. |. ..+.|++||..+.............++ ....+.|.+.....++...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            36899999876 55 489999999864321111111100111 1235667776666677789999999876

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.19  E-value=1.1e-05  Score=56.43  Aligned_cols=72  Identities=26%  Similarity=0.443  Sum_probs=50.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .+....+..|++|+|.|.......  ...+.|||.  +.....        ....++|+.      .....|+|.+++.+
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~--~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   82 (116)
T cd07706           5 AQPDVSVQVGEEVTLNCRYETSWT--NYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE   82 (116)
T ss_pred             eCCceEEcCCCCEEEEEEEeCCCC--ceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence            455666889999999999876422  568999983  221100        112345554      23568999999999


Q ss_pred             CCeeEEEEEE
Q psy15235        177 DAGQYSCRLI  186 (323)
Q Consensus       177 d~G~y~C~~~  186 (323)
                      |+|.|.|.+.
T Consensus        83 Dsg~Y~C~~~   92 (116)
T cd07706          83 DSAKYFCALS   92 (116)
T ss_pred             HCEEEEEEEE
Confidence            9999999994

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.18  E-value=2.2e-05  Score=52.29  Aligned_cols=69  Identities=19%  Similarity=0.190  Sum_probs=42.9

Q ss_pred             EeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        217 VIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      +..|+.++|.|.+.|+ |.. .++|++||..+........... ..++  ...+.|.+.   .++...|+|.+.+..
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~-~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~   83 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIP-NGDWTYQILVMLETT---PSRGDTYTCVVEHSS   83 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEE-CCCCcEEEEEEEEEc---CCCCCEEEEEEEeCC
Confidence            4468899999999885 554 7999999988653211111110 1111  123444443   345668999999987

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.17  E-value=0.00079  Score=55.95  Aligned_cols=160  Identities=18%  Similarity=0.267  Sum_probs=86.8

Q ss_pred             EEEeeccc--CcceEEEeeccCCccc--eeeeeee--CCceeE----EecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235         82 YSIHEAIL--ESGYVQSSLFIPRMNA--ITGNYDI--EPKYKV----FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI  151 (323)
Q Consensus        82 l~i~~~~~--~G~Y~C~~~~~~~~~~--~~~~~~~--~~~~~~----~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~  151 (323)
                      |.|..++.  +|.|+-...+..+...  ..+.+..  .|.+.+    +-+|+...-.|.+..+.|.....+.||+|+.++
T Consensus       184 L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V  263 (466)
T PHA03270        184 LVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEV  263 (466)
T ss_pred             EEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCccc
Confidence            77777766  9999999765444221  1111111  333322    557999999999988665546799999999887


Q ss_pred             cccccccCcEE-eceeEEEEeeeecCCC------eeEEEEEEcCCCCC--CCCceeeeeEEEecceeeeeceeEEeeCCe
Q psy15235        152 TEATELSGRLT-QSKDSITIRKTTVDDA------GQYSCRLIDPKSTN--TTPLAQADFDVIMKPTAKLVETLTVIEGEK  222 (323)
Q Consensus       152 ~~~~~~~~~~~-~~~~~l~i~~~~~~d~------G~y~C~~~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~  222 (323)
                      ........... ....-..+.-++.++.      -..+|.+.-+....  ....+...-.|..+|.+++.    +..|  
T Consensus       264 ~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~----F~dG--  337 (466)
T PHA03270        264 FAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME----FGGD--  337 (466)
T ss_pred             cCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE----EeCC--
Confidence            53111111111 1111112222333322      26799996333222  22344444456666766532    2223  


Q ss_pred             EEEEEEEecCC-CCcEEEEECCeeeec
Q psy15235        223 LRLECLVVGSP-PPTVEWRIGNDTYFR  248 (323)
Q Consensus       223 ~~l~C~~~g~p-~~~~~W~~~~~~~~~  248 (323)
                       ...|.+.=-| ...+.|+.++.....
T Consensus       338 -~AVCtA~CVPegV~l~W~V~D~~~pa  363 (466)
T PHA03270        338 -EAVCTAACVPEGVTLAWLLGADPAPA  363 (466)
T ss_pred             -EEEEeccccCCCCEEEEEecCCCCCC
Confidence             3446663233 447999987765543

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.16  E-value=2.7e-05  Score=51.89  Aligned_cols=65  Identities=25%  Similarity=0.444  Sum_probs=43.5

Q ss_pred             CcEEEEEEeecCCCCCCceEEEEECCe----eccc---------cccccCcEE-----eceeEEEEeeeecCCCeeEEEE
Q psy15235        123 VPFTLKCNVTSPPPGDDYQIVWYKGNK----SITE---------ATELSGRLT-----QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~----~~~~---------~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      +.++|.|.......  ..+++|.|...    .+..         ...+.+|+.     ....+|.|.+++.+|+|.|.|.
T Consensus         1 ~~vtL~C~~~~~~~--~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~   78 (96)
T cd05889           1 EKMKLECVYPKTGV--LIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCS   78 (96)
T ss_pred             CCEEEEeEcCCCCc--EEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEE
Confidence            46899998865332  57899988422    1211         122334444     2357899999999999999999


Q ss_pred             EEcCC
Q psy15235        185 LIDPK  189 (323)
Q Consensus       185 ~~~~~  189 (323)
                      +..-+
T Consensus        79 ~~t~P   83 (96)
T cd05889          79 LVTYP   83 (96)
T ss_pred             EEeCC
Confidence            95444

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.14  E-value=2.2e-05  Score=55.11  Aligned_cols=76  Identities=22%  Similarity=0.340  Sum_probs=49.4

Q ss_pred             eeceeEEeeCCeEEEEEEEecCC------CCcEEEEECCee------ee-c---------cCCeeeeecCCCCCCcceeE
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSP------PPTVEWRIGNDT------YF-R---------SQGRIKLSEHPEKGTANSVL  268 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p------~~~~~W~~~~~~------~~-~---------~~~~~~~~~~~~~~~~~~~L  268 (323)
                      .|....+.+|+.++|.|.....+      ...+.|++....      +. .         ..+|+....  +.......|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~--~~~~~~~sL   82 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLG--DLGKKNCSL   82 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEec--CCCCCEEEE
Confidence            45566788999999999875221      235999985321      10 0         012333321  112246789


Q ss_pred             EEeecCcCCCeEEEEEEeec
Q psy15235        269 QIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       269 ~i~~v~~~d~G~y~C~a~n~  288 (323)
                      +|.+++.+|+|.|.|.+...
T Consensus        83 ~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          83 LISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEccCChhhCeEEEEEEEcC
Confidence            99999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>KOG1480|consensus

Probab=98.13  E-value=1.4e-06  Score=76.62  Aligned_cols=200  Identities=22%  Similarity=0.307  Sum_probs=115.0

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEeecCCCCC-CceEEEEECCeecc--ccccccCcEEeceeEEEEeeeecCC---Ce
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGD-DYQIVWYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDD---AG  179 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d---~G  179 (323)
                      .-+.+...|....+..+.++.|.|.+...+... .+.=.|..+.....  ..+...++- -....+.|...+.++   ..
T Consensus        23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~-~~~~si~Isr~~v~~~~~~~  101 (909)
T KOG1480|consen   23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLG-VREVSIDISRQQVETSGGPE  101 (909)
T ss_pred             CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCccccee-EEeeeeeeehhhhhcccCcc
Confidence            344555577777788899999999987655110 12233544332111  111111110 111122222222222   22


Q ss_pred             eEEEEE--EcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeee
Q psy15235        180 QYSCRL--IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLS  256 (323)
Q Consensus       180 ~y~C~~--~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~  256 (323)
                      .|.|+.  +..........+.+.+.+..+-....+....|..+....+.|.. .+.|...++|++++..+.. .......
T Consensus       102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-d~n~~~~  180 (909)
T KOG1480|consen  102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-DANVIRA  180 (909)
T ss_pred             ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc-cccchhh
Confidence            476655  22221111111111222222233334445667788889999988 6778889999999987765 3333222


Q ss_pred             cCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcChhh
Q psy15235        257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVE  315 (323)
Q Consensus       257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~~~  315 (323)
                             ....|++..+...|.|+|+|+|.|..+. ..+....+.+.|.+.-..+..+.
T Consensus       181 -------~d~~li~~~arlsd~~nytc~a~ni~~~-r~~~~~~v~vyv~ggwsswt~w~  231 (909)
T KOG1480|consen  181 -------SDHNLIISQARLSDSGNYTCEATNIVAK-RKSDPATVQVYVNGGWSEWTEWS  231 (909)
T ss_pred             -------hcCCccccchhhhhcccceeeeehhhcc-ccccceEEEEEEcCcccccccce
Confidence                   3677999999999999999999999877 35677788888888877665544

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.13  E-value=1.2e-05  Score=54.28  Aligned_cols=64  Identities=19%  Similarity=0.418  Sum_probs=44.9

Q ss_pred             EecCCcEEEEEEeecC--CCCCCceEEEEECC--eec---cc-----cccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235        119 FEYRVPFTLKCNVTSP--PPGDDYQIVWYKGN--KSI---TE-----ATELSGRLT----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~--~~~~~~~i~W~~~~--~~~---~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      +.+|++++|.|...+.  .   ...+.||+..  ...   ..     .....+++.    .....|+|.+++.+|+|.|.
T Consensus         3 v~~G~~v~l~C~~~~~~~~---~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~   79 (98)
T cd04984           3 VSPGETVTITCTGSSGNIS---GNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYY   79 (98)
T ss_pred             cCCCCCEEEEEEEcCCCcC---CCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEE
Confidence            5679999999998764  3   4679999832  111   10     011233554    34567999999999999999


Q ss_pred             EEE
Q psy15235        183 CRL  185 (323)
Q Consensus       183 C~~  185 (323)
                      |.+
T Consensus        80 C~~   82 (98)
T cd04984          80 CQV   82 (98)
T ss_pred             EEE
Confidence            998

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd00096 Ig Immunoglobulin domain

Probab=98.12  E-value=2e-05  Score=49.17  Aligned_cols=66  Identities=30%  Similarity=0.583  Sum_probs=46.4

Q ss_pred             EEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        223 LRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       223 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      +.|.|.+.+.+...+.|++++......... ..............|.|.++..+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999987777789999988765422111 000001122357889999999999999999999876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.12  E-value=1.2e-05  Score=54.34  Aligned_cols=69  Identities=17%  Similarity=0.300  Sum_probs=43.2

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ...++.++|.|.+.+..|. ...|+|++||..+...........      .....|.+..-...+...|+|.+ .+.
T Consensus        14 ~~~~~~~~L~C~~~gfyP~-~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V-~H~   88 (100)
T cd07699          14 LEKSGKATLVCLINDFYPG-FATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEV-THE   88 (100)
T ss_pred             HccCCCcEEEEEEEeEECC-CCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEE-Eec
Confidence            3357789999999997765 579999999998754211111111      12233434333333456999999 665

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.10  E-value=9.5e-06  Score=54.83  Aligned_cols=71  Identities=18%  Similarity=0.326  Sum_probs=45.0

Q ss_pred             eCCeEEEEEEEecC-C-CCcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++.++|.|.+.|. | ...++|++||..+.............++ ....+.|.+..-..++...|+|.+.+..
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            46779999999875 5 4479999999987422111111110111 1234566666555555678999999976

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.08  E-value=3.7e-05  Score=48.96  Aligned_cols=63  Identities=21%  Similarity=0.449  Sum_probs=39.8

Q ss_pred             cEEEEEEeecCCCCCCceEEEEECCeeccccccc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       124 ~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .++|.|.+.++.|. ...+.|+|||.++......       ++.+ .....|.+.....++...|+|.+ .+.
T Consensus         1 ~~~L~C~a~gf~P~-~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~-~~~s~L~v~~~~~~~~~~~tC~V-~H~   70 (75)
T smart00407        1 KATLVCLVSGFYPP-DITVTWLRNGQEVTSGVSTTDPLKNSDGTY-FLSSYLTVSASTWESGDTYTCQV-THE   70 (75)
T ss_pred             CeEEEEEEEeEeCC-CCEEEEEECCEECCCCEEECceEECCCCCE-EEEEEEEEccccCCCCCEEEEEE-EEc
Confidence            36899999998654 4799999999874431111       1111 22334555444556667999999 554

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.08  E-value=1.7e-05  Score=54.10  Aligned_cols=67  Identities=24%  Similarity=0.431  Sum_probs=45.0

Q ss_pred             EeeCCeEEEEEEEecCCCCcEEEEECCee-------ee---cc-----------CCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        217 VIEGEKLRLECLVVGSPPPTVEWRIGNDT-------YF---RS-----------QGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~p~~~~~W~~~~~~-------~~---~~-----------~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      +.+|++++|.|.........+.|++....       +.   ..           ..++...  .  ......|+|.+++.
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~--~--~~~~~~L~I~~~~~   78 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS--R--SSNSFVLTLKNFQK   78 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE--e--cCCEEEEEECCCCH
Confidence            56899999999986544456999984421       10   00           1122221  1  11456799999999


Q ss_pred             CCCeEEEEEEee
Q psy15235        276 ADRGNYYCHGNN  287 (323)
Q Consensus       276 ~d~G~y~C~a~n  287 (323)
                      +|+|.|.|.+.+
T Consensus        79 sDsgtY~Ca~~~   90 (104)
T cd05720          79 ENEGYYFCSVAS   90 (104)
T ss_pred             HHCEEEEEEEcc
Confidence            999999999874

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.04  E-value=0.0014  Score=55.13  Aligned_cols=158  Identities=16%  Similarity=0.219  Sum_probs=87.4

Q ss_pred             EEEEEeeccc--CcceEEEeeccCCcc--ceeeeeee--CCceeE----EecCCcEEEEEEeecCCCCCCceEEEEECCe
Q psy15235         80 FKYSIHEAIL--ESGYVQSSLFIPRMN--AITGNYDI--EPKYKV----FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK  149 (323)
Q Consensus        80 ~~l~i~~~~~--~G~Y~C~~~~~~~~~--~~~~~~~~--~~~~~~----~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~  149 (323)
                      +.|.|..++.  +|.|+-...+..+..  .....+..  .|.+.+    +-+|+...-.|.+..+.|.....+.|++||.
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~  277 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAK  277 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCe
Confidence            6678887766  999997765443321  11111111  233222    5579999999999886655467999999999


Q ss_pred             eccccccccCcEE-------eceeEEEEeeeec-CCCeeEEEEEEcCCCCCCCC--ceeeeeEEEecceeeeeceeEEee
Q psy15235        150 SITEATELSGRLT-------QSKDSITIRKTTV-DDAGQYSCRLIDPKSTNTTP--LAQADFDVIMKPTAKLVETLTVIE  219 (323)
Q Consensus       150 ~~~~~~~~~~~~~-------~~~~~l~i~~~~~-~d~G~y~C~~~~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~  219 (323)
                      ++.....-.+...       ...+.|++..... +..-..+|.+.-+.......  .+...-.|..+|.+++.    ...
T Consensus       278 ~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~----F~~  353 (486)
T PHA03273        278 EVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT----VED  353 (486)
T ss_pred             eccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE----EeC
Confidence            8872111011111       2223344433221 22336899996444222222  23444456667766532    223


Q ss_pred             CCeEEEEEEEecCCC--CcEEEEECCe
Q psy15235        220 GEKLRLECLVVGSPP--PTVEWRIGND  244 (323)
Q Consensus       220 g~~~~l~C~~~g~p~--~~~~W~~~~~  244 (323)
                      |   ...|.+.=-|.  ..+.|+.++.
T Consensus       354 G---~AVCtA~CVP~egV~l~W~v~D~  377 (486)
T PHA03273        354 G---DAVCTAKCVPSTGVFVSWSVNDH  377 (486)
T ss_pred             C---EEEEecccccCCCeeEEEEccCC
Confidence            3   34577643443  6899998773

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.04  E-value=4.1e-05  Score=53.72  Aligned_cols=77  Identities=14%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             eEEEeeceEEecCCcEEEEEEec-c-------CceEEEEEcCc-----ccee-ec--------cCcceEEEeeeeCCeEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILT-I-------FEQVKWQLNGR-----NINQ-SS--------VDSGFAATANLTEDNFK   81 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~-~-------~~~v~W~~~g~-----~~~~-~~--------~~~~~~~~~~~~~~~~~   81 (323)
                      .++.|..+.+.+|++|+|.|... +       ...+.|++...     .+.. ..        ...+.....+...+++.
T Consensus         2 ~vq~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~s   81 (119)
T cd05712           2 GLWMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCS   81 (119)
T ss_pred             cccCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEE
Confidence            45667778999999999999843 2       24689999431     1111 10        11111222244566777


Q ss_pred             EEEeeccc--CcceEEEeecc
Q psy15235         82 YSIHEAIL--ESGYVQSSLFI  100 (323)
Q Consensus        82 l~i~~~~~--~G~Y~C~~~~~  100 (323)
                      |.|.+++.  +|.|.|.+...
T Consensus        82 L~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          82 LLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEccCChhhCeEEEEEEEcC
Confidence            88877655  99999998653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.02  E-value=2.6e-05  Score=54.46  Aligned_cols=74  Identities=23%  Similarity=0.377  Sum_probs=47.6

Q ss_pred             eceeEEeeCCeEEEEEEEecCC--CCcEEEEECC--ee---ee---c----------cCCeeeeecCCCCCCcceeEEEe
Q psy15235        212 VETLTVIEGEKLRLECLVVGSP--PPTVEWRIGN--DT---YF---R----------SQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~--~~---~~---~----------~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      +....+.+|++++|.|...+..  ...+.||+..  +.   +.   .          ..+++....  ........|+|.
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~   81 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITR--DTSKSTVYLQLN   81 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEE--EccCCEEEEEEC
Confidence            4456788999999999986432  3469999832  11   10   0          012232221  011123579999


Q ss_pred             ecCcCCCeEEEEEEee
Q psy15235        272 EATMADRGNYYCHGNN  287 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~n  287 (323)
                      +++.+|+|.|.|.+..
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999999875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.01  E-value=0.00011  Score=49.00  Aligned_cols=76  Identities=25%  Similarity=0.382  Sum_probs=46.9

Q ss_pred             CeEEEEEEEecC-CCCcEEEEECCe----eee------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        221 EKLRLECLVVGS-PPPTVEWRIGND----TYF------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       221 ~~~~l~C~~~g~-p~~~~~W~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      +.++|.|..... ....+.|.+...    .+-            .-.+|.......   ....+|+|.+++.+|+|.|+|
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~---~~d~sI~i~nvt~~D~G~Y~C   77 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST---REDMSLSFNNATEEDVGLYCC   77 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC---CCccEEEEcCCCcccCEEEEE
Confidence            468899998532 234689988432    110            001233332111   146899999999999999999


Q ss_pred             EEeecccCCCCCceeEEEE
Q psy15235        284 HGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       284 ~a~n~~g~~~~~~~~~~~l  302 (323)
                      .+...-   .|+.++.+.|
T Consensus        78 ~~~t~P---~g~~~~~i~~   93 (96)
T cd05889          78 SLVTYP---QGSWEKVIEV   93 (96)
T ss_pred             EEEeCC---CCCeEEEEEE
Confidence            998753   1335555554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.98  E-value=6e-05  Score=48.28  Aligned_cols=61  Identities=18%  Similarity=0.362  Sum_probs=45.0

Q ss_pred             EEecCCcEEEEEEeecCC-CCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        118 VFEYRVPFTLKCNVTSPP-PGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .+-.|++++|+|.....+ |  .+.|+|...+...-.      .......+|.+.++...|+|.++|.++
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p--~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~   71 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLP--AFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVS   71 (88)
T ss_pred             eeecCCcEEEEEecCCCCCC--CccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEE
Confidence            455799999999996643 1  349999876544221      001356789999999999999999994

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.96  E-value=8.8e-05  Score=49.57  Aligned_cols=71  Identities=15%  Similarity=0.342  Sum_probs=42.1

Q ss_pred             EeeCCeEEEEEEEecC--CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        217 VIEGEKLRLECLVVGS--PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~--p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      +..|+.++|+|.+.|.  |+. .++|.+|++......... .. ...++  ...+.|.+..-..++.-.|+|.+.+..
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~-~~-~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQP-PE-SHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecc-cc-cCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            4458899999999887  443 699999875432111110 01 01111  123555555444334457999999987

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.95  E-value=6.5e-05  Score=50.73  Aligned_cols=71  Identities=13%  Similarity=0.021  Sum_probs=46.3

Q ss_pred             eEEecCCcEEEEEEec---cCceEEEEEcCccc--ee--------eccCcceEEEeeeeCCeEEEEEeeccc--CcceEE
Q psy15235         31 TEIMEGAPINISCILT---IFEQVKWQLNGRNI--NQ--------SSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQ   95 (323)
Q Consensus        31 ~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~--~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C   95 (323)
                      +.+.+|++|+|.|...   ....+.|+|....-  ..        .....+..+..+...+.+.|.|.+++.  +|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            4688999999999944   34679999953211  00        011222233333446778888888865  999999


Q ss_pred             EeeccC
Q psy15235         96 SSLFIP  101 (323)
Q Consensus        96 ~~~~~~  101 (323)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            997544

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.92  E-value=0.00014  Score=48.18  Aligned_cols=72  Identities=22%  Similarity=0.273  Sum_probs=46.3

Q ss_pred             eeEEeeCCeEEE-EEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        214 TLTVIEGEKLRL-ECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       214 ~~~~~~g~~~~l-~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ...+.+|+.+.+ .|.+ .|.|.+.|+|+.+......    .......++ ....+.+.+.....+|.-.++|.+.+..
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~----~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE----SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc----eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            345678899999 9999 6779999999976322110    001100111 1234677776666666668999999986

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.91  E-value=0.00013  Score=50.18  Aligned_cols=66  Identities=15%  Similarity=0.364  Sum_probs=41.3

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc-----cc-CcEEeceeEEEEeeeecCCCe-eEEEEEEcCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-----LS-GRLTQSKDSITIRKTTVDDAG-QYSCRLIDPK  189 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-----~~-~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~  189 (323)
                      ..|+.++|.|.+.++.|. ...++|+|||..+.....     .+ ..| .....|.+.. ...|.| .|+|.+ .+.
T Consensus        19 ~~g~~~tL~C~a~gF~P~-~i~v~W~kng~~~~~~~~~~~p~~d~~ty-~~~S~L~~~~-~~~d~~~~ytC~V-~H~   91 (111)
T cd05772          19 NPGQSVNFTCSAHGFSPR-DITVKWLKNGNELSAEQPNITPEGDSVSY-NVTSTVQVKL-TEDDVHSQVTCEV-QHR   91 (111)
T ss_pred             CCCCCEEEEEEEeeEeCC-CCEEEEEECCEECcccccceeeCCCCCcE-EEEEEEEEEC-ccccccCceEEEE-EeC
Confidence            357889999999998764 479999999998754100     01 011 1233344443 233434 599999 665

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.91  E-value=6.9e-05  Score=49.84  Aligned_cols=70  Identities=20%  Similarity=0.368  Sum_probs=43.6

Q ss_pred             eCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ..+.++|.|.+.|. |. ..++|++||..+........... +.++  ...+.|.+..-...+...|+|.+.+..
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~-~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQK-EEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEE-CCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            35668999999885 54 47999999987632111110110 1111  234566666554456678999999977

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.89  E-value=0.00019  Score=47.83  Aligned_cols=67  Identities=19%  Similarity=0.365  Sum_probs=41.1

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEE---EeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSIT---IRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .|+.++|.|.+.++.|. ...++|++||..+...............++.   .-.+...+...|+|.+ .+.
T Consensus        13 ~~~~~~L~C~~~gFyP~-~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V-~H~   82 (94)
T cd05766          13 LSHPHLLVCHVWGFYPP-EITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVV-EHS   82 (94)
T ss_pred             CCCCeEEEEEEeeecCC-CCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEE-EeC
Confidence            57889999999997765 5799999999887552111111111111111   1123344566899999 565

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.88  E-value=5.1e-05  Score=51.38  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             eeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCe-eeeecCCC-CC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        218 IEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGR-IKLSEHPE-KG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~-~~~~~~~~-~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ..+..++|.|.+.|+ |.. .++|++||..+...... .......+ ++  ...+.|.+..-...+...|+|.+.+..
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            346789999999886 443 68999999886532100 00010010 11  234566665444445568999999976

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.88  E-value=0.00013  Score=48.63  Aligned_cols=78  Identities=18%  Similarity=0.285  Sum_probs=46.4

Q ss_pred             CCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCce
Q psy15235        220 GEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE  297 (323)
Q Consensus       220 g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~  297 (323)
                      .....+.|.+ .|.|.+.|.|+++....    .........++ ....++|.+.....+|.-.|+|.+.|..-.  ....
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~----~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~--~~~~   88 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGE----AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ--EPQR   88 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCc----ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC--CCeE
Confidence            3467899999 67899999999971110    01111110111 123567777655555556899999998744  2344


Q ss_pred             eEEEEE
Q psy15235        298 AFVYVR  303 (323)
Q Consensus       298 ~~~~l~  303 (323)
                      ..+.|.
T Consensus        89 ~~~~L~   94 (95)
T cd05719          89 FSVTLN   94 (95)
T ss_pred             EEEEee
Confidence            555544

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.86  E-value=5.6e-05  Score=51.59  Aligned_cols=64  Identities=19%  Similarity=0.286  Sum_probs=44.2

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECC----eec---c-c-c---c------cccCcEE----eceeEEEEeeeecC
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGN----KSI---T-E-A---T------ELSGRLT----QSKDSITIRKTTVD  176 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~----~~~---~-~-~---~------~~~~~~~----~~~~~l~i~~~~~~  176 (323)
                      +..|++|+|.|......   ...+.||+..    ...   . . .   .      ....++.    .....|+|.+++.+
T Consensus         3 v~~G~~vtL~C~~~~~~---~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s   79 (104)
T cd05720           3 AELGQKVELKCEVLNSS---PTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE   79 (104)
T ss_pred             ccCCCeEEEEEEecCCC---CCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence            56899999999886554   4679999832    111   1 0 0   0      0123443    34567999999999


Q ss_pred             CCeeEEEEE
Q psy15235        177 DAGQYSCRL  185 (323)
Q Consensus       177 d~G~y~C~~  185 (323)
                      |+|.|.|.+
T Consensus        80 DsgtY~Ca~   88 (104)
T cd05720          80 NEGYYFCSV   88 (104)
T ss_pred             HCEEEEEEE
Confidence            999999998

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.86  E-value=8.7e-05  Score=48.32  Aligned_cols=69  Identities=20%  Similarity=0.330  Sum_probs=44.0

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .++.+.|.|.+.|+ |.. .+.|++++..+.............++ ....+.|.+.   ..+...|+|.+.+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            48899999999875 644 69999999887532211111100111 1234556666   5556689999999873

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.86  E-value=0.00027  Score=46.95  Aligned_cols=64  Identities=22%  Similarity=0.346  Sum_probs=40.4

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .++..+|.|.+.++.|. ...++|.+||..+...........      .....|.+   .+.+...|+|.+ .+.
T Consensus        14 ~~~~~tL~C~a~gFyP~-~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V-~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPP-VLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIV-EHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECC-cCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEE-EeC
Confidence            35668999999997765 579999999988754211111111      11223333   345566999999 555

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.85  E-value=0.00012  Score=44.02  Aligned_cols=51  Identities=20%  Similarity=0.469  Sum_probs=36.2

Q ss_pred             eeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        218 IEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      ..|.+|+|+|...+.   .+.|.+|+..+...               ...+.+.+-. +++|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~---------------~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS---------------DEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCC---------------CceEEeeccC-CCCceEEEEeCC
Confidence            458999999986522   39999998655432               2334444555 889999999964

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.85  E-value=9.2e-05  Score=50.87  Aligned_cols=66  Identities=17%  Similarity=0.398  Sum_probs=43.8

Q ss_pred             EEecCCcEEEEEEeecCCCCCCceEEEEECCee---------ccc--------cccc-cCcEE------eceeEEEEeee
Q psy15235        118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS---------ITE--------ATEL-SGRLT------QSKDSITIRKT  173 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~---------~~~--------~~~~-~~~~~------~~~~~l~i~~~  173 (323)
                      .+.+|++++|.|...+...  ...+.|||....         +..        .... ..++.      .....|+|.++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~--~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   79 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISE--NTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV   79 (107)
T ss_pred             EEcCCCCEEEEEEEecCCC--CCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence            3678999999999866331  358999983211         000        0001 23343      22457999999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|+|.|.|..
T Consensus        80 ~~~Dsg~YyCa~   91 (107)
T cd07700          80 KPEDSGTYFCMT   91 (107)
T ss_pred             CHHHCEEEEEeE
Confidence            999999999998

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.84  E-value=0.0001  Score=50.88  Aligned_cols=73  Identities=15%  Similarity=0.275  Sum_probs=46.3

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCC--CCCcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPE--KGTANSVLQIDEATMAD-RGNYYCHGNNVATR  291 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~  291 (323)
                      .++.++|.|.+.|+ |.. .++|++|+..+............+.  .....+.|.+...+..+ ...|+|.+.+....
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            46779999999876 553 7999999988653211110110011  11245677777666555 45799999998743

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.84  E-value=0.0073  Score=51.23  Aligned_cols=202  Identities=17%  Similarity=0.246  Sum_probs=105.7

Q ss_pred             eeeCCeEEEEEeeccc--CcceEEEeeccCCc---cceeeeeee--CCceeE----EecCCcEEEEEEeecCCCCCCceE
Q psy15235         74 NLTEDNFKYSIHEAIL--ESGYVQSSLFIPRM---NAITGNYDI--EPKYKV----FEYRVPFTLKCNVTSPPPGDDYQI  142 (323)
Q Consensus        74 ~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~---~~~~~~~~~--~~~~~~----~~~g~~v~l~C~~~~~~~~~~~~i  142 (323)
                      ....+.+.|.|.+++.  +|.|+-.+.+....   ....+.+..  .|.+.+    +-+|+...-.|.+..+.|.....+
T Consensus       283 ~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PVL~Ge~YkAtC~vA~YYPp~Svrl  362 (566)
T PHA03269        283 RKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIV  362 (566)
T ss_pred             CCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEE
Confidence            3346677788888776  99998776532221   111122221  333222    557999999999988765546799


Q ss_pred             EEEECCeeccccccccCcEE-------eceeEEEEeeeecCC--CeeEEEEEEcCCCCCCCC--ceeeeeEEEecceeee
Q psy15235        143 VWYKGNKSITEATELSGRLT-------QSKDSITIRKTTVDD--AGQYSCRLIDPKSTNTTP--LAQADFDVIMKPTAKL  211 (323)
Q Consensus       143 ~W~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d--~G~y~C~~~~~~~~~~~~--~~~~~l~v~~~p~~~~  211 (323)
                      +||+|+.++.... -...+.       ...+.|++......|  .-..+|.+.-........  .+...-.|..+|.+++
T Consensus       363 rWf~ng~~V~~~~-it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm  441 (566)
T PHA03269        363 KWTSNFGNIGKNF-ITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI  441 (566)
T ss_pred             EEEeCCcccCccc-cccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE
Confidence            9999988876410 011111       222333332211111  235699996444322222  3444455666776653


Q ss_pred             eceeEEeeCCeEEEEEEEecCC--CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEee---cCcCCC-eEEEEEE
Q psy15235        212 VETLTVIEGEKLRLECLVVGSP--PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE---ATMADR-GNYYCHG  285 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~---v~~~d~-G~y~C~a  285 (323)
                      .    ...|   ...|.+.=-|  ...+.|+.++....+. .......   -....+...|..   +..+|. -+|+|.+
T Consensus       442 ~----FedG---~AVCtA~CVP~~~V~l~WlVgD~p~~~~-~t~itG~---C~ehPGLVNLRS~~pLS~~dgpveYTCrL  510 (566)
T PHA03269        442 E----IIDG---HIVCLAKCVPRGVVHFNWWINDIPIEHE-NSEILGV---CDNNKRFVNLQSSCDTSELDGPITYSCHL  510 (566)
T ss_pred             E----EeCC---EEEEecccccCCCceEEEEecCCCCCCc-cceeecc---CCCCCCceeecccccccccCCceeEEEEE
Confidence            2    2233   3456664333  3479999877663322 1111110   001233344444   333332 4799998


Q ss_pred             ee
Q psy15235        286 NN  287 (323)
Q Consensus       286 ~n  287 (323)
                      ..
T Consensus       511 ~G  512 (566)
T PHA03269        511 DG  512 (566)
T ss_pred             ee
Confidence            75

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.84  E-value=0.00013  Score=48.42  Aligned_cols=76  Identities=16%  Similarity=0.227  Sum_probs=44.9

Q ss_pred             CeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235        221 EKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA  298 (323)
Q Consensus       221 ~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~  298 (323)
                      ....+.|.+ .|.|.+.|+|+++.....   .. ......++. ...+.|.+.....+|...|+|.+.|..-+  .....
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~---~~-~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~--~~~~~   89 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNA---NT-TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ--EPQLL   89 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCe---eE-EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC--CCeEE
Confidence            457899988 567999999998721110   00 111001111 23567777666666666899999998744  22444


Q ss_pred             EEEE
Q psy15235        299 FVYV  302 (323)
Q Consensus       299 ~~~l  302 (323)
                      .+.|
T Consensus        90 ~~~l   93 (95)
T cd07703          90 PVTL   93 (95)
T ss_pred             EEEE
Confidence            4444

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.81  E-value=0.00028  Score=47.01  Aligned_cols=66  Identities=21%  Similarity=0.456  Sum_probs=39.4

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEE---EEeeeecCCCeeEEEEEEcCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI---TIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l---~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++.++|.|.+.++.|. ...++|+++|................+..+   ..-.+...+.+.|+|.+ .+.
T Consensus        14 ~~~~~L~C~a~gF~P~-~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V-~H~   82 (93)
T cd07698          14 DGSLTLSCHATGFYPR-DIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRV-EHS   82 (93)
T ss_pred             CCcEEEEEEEEEEeCC-CcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEE-EeC
Confidence            6789999999997653 469999999864322111111111111111   12233445778999999 565

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.80  E-value=0.0003  Score=46.56  Aligned_cols=66  Identities=24%  Similarity=0.311  Sum_probs=41.6

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEE---eeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI---RKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~y~C~~~~~~  189 (323)
                      .|+..+|.|.+.++.|. ...++|.|||..+. ...........+.++.+   -.+...+...|+|.+ .+.
T Consensus        14 ~g~~~~L~C~a~gFyP~-~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V-~H~   82 (93)
T cd05770          14 NGKPNVLNCYVTGFHPP-DIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRV-RHN   82 (93)
T ss_pred             CCCceEEEEEEEEEeCC-CCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEE-EEC
Confidence            46667999999997665 57999999999875 22222222111222222   123456667899999 554

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.79  E-value=0.00013  Score=48.58  Aligned_cols=67  Identities=16%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++.++|.|.+.|. |.. .++|.+||..+..........  +++.  ...+.|++..-.  ....|+|.+.+..
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~--~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKD--KDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEe--cCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            46779999999885 544 699999998764221111111  1111  123455555332  2335999999955

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.78  E-value=0.00015  Score=48.19  Aligned_cols=67  Identities=12%  Similarity=0.350  Sum_probs=41.0

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..+.++|.|.+.++.|. ...|+|++||..+...........      .....|.+..-...+...|+|.+ .+.
T Consensus        13 ~~~~~~L~C~a~gFyP~-~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V-~H~   85 (94)
T cd05847          13 TSETIQLLCLISGYTPG-TIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKV-THQ   85 (94)
T ss_pred             CCCCEEEEEEEEeEECC-CCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEE-EEC
Confidence            45679999999997765 579999999988633111111111      22233444433223556899999 555

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.75  E-value=0.00012  Score=47.35  Aligned_cols=62  Identities=24%  Similarity=0.446  Sum_probs=39.8

Q ss_pred             eEEEEEEEecCCCC--cEEEEECCe--e---ee------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235        222 KLRLECLVVGSPPP--TVEWRIGND--T---YF------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY  282 (323)
Q Consensus       222 ~~~l~C~~~g~p~~--~~~W~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~  282 (323)
                      +++|.|.+.....+  .+.|++...  .   +.            ...+|+......  ......|.|.+++.+|+|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~   78 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT--SKNDVSLTISNLRVEDTGTYY   78 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC--cCCEEEEEEcCCCHHHCEEEE
Confidence            37899998655443  799988442  1   11            012344433211  124688999999999999999


Q ss_pred             EEE
Q psy15235        283 CHG  285 (323)
Q Consensus       283 C~a  285 (323)
                      |.+
T Consensus        79 C~v   81 (81)
T smart00406       79 CAV   81 (81)
T ss_pred             EcC
Confidence            963

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.69  E-value=0.022  Score=47.43  Aligned_cols=168  Identities=16%  Similarity=0.141  Sum_probs=86.4

Q ss_pred             EeeeeCCeEEEEEeeccc--CcceEEEeeccCCccc--eeeeeee---CCceeE----EecCCcEEEEEEeecCCCCCCc
Q psy15235         72 TANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRMNA--ITGNYDI---EPKYKV----FEYRVPFTLKCNVTSPPPGDDY  140 (323)
Q Consensus        72 ~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~~~--~~~~~~~---~~~~~~----~~~g~~v~l~C~~~~~~~~~~~  140 (323)
                      -.+....+..+.|.++..  +|.|+-...+......  ......+   .|.+.+    +-.|+...-.|.+..+.|....
T Consensus       199 ~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~Sv  278 (490)
T PHA03271        199 WINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSV  278 (490)
T ss_pred             eeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCce
Confidence            334446667777877755  8866444433222211  1111111   332222    4579999999999886654467


Q ss_pred             eEEEEECCeeccccccccCcE--E------eceeEEEEeeeecCCCeeEEEEEEcCCCC-CCCCceeeeeEEEecceeee
Q psy15235        141 QIVWYKGNKSITEATELSGRL--T------QSKDSITIRKTTVDDAGQYSCRLIDPKST-NTTPLAQADFDVIMKPTAKL  211 (323)
Q Consensus       141 ~i~W~~~~~~~~~~~~~~~~~--~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~~~~l~v~~~p~~~~  211 (323)
                      .++|++||.++......+...  .      ....++.+.+...+..-..+|.+.-.... .....++..-.|..+|.+++
T Consensus       279 rlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv  358 (490)
T PHA03271        279 YVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISL  358 (490)
T ss_pred             EEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEE
Confidence            999999998775422212221  0      11223333332222233789999633321 11123333334555665543


Q ss_pred             eceeEEeeCCeEEEEEEEecCC-CCcEEEEECCeee
Q psy15235        212 VETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDTY  246 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~  246 (323)
                      .    ...|   .-.|.+.=-| ...+.|+.++...
T Consensus       359 ~----FedG---~AVCtA~CVP~gV~lrWlVgD~p~  387 (490)
T PHA03271        359 A----FKDG---YAICTIECVPSGITVRWLVHDEPQ  387 (490)
T ss_pred             E----EeCC---EEEEeccccCCCcEEEEEecCCCC
Confidence            2    3333   3346653222 4589999877654

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.68  E-value=0.00022  Score=47.13  Aligned_cols=65  Identities=22%  Similarity=0.391  Sum_probs=41.5

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccc-----cccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-----ATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |+.+.|.|.+.+..|  .+.|+|+.++..+..     ..............|.+..-..++...++|.+ .+.
T Consensus        14 ~~~~~~~C~s~~~~P--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~-~~~   83 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYP--PPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRA-SHP   83 (89)
T ss_dssp             TEEEEEEEEEEEEBS---EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEE-EET
T ss_pred             ceEEEEEEEeCCeEC--CeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEE-ECC
Confidence            689999998877655  789999999877721     00001111133456666655455677999999 555

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.66  E-value=0.00028  Score=45.92  Aligned_cols=63  Identities=30%  Similarity=0.554  Sum_probs=41.2

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .++.++|.|.+.++.|. ...|.|+++|..+......       ++.| .....|.+.   ..+...|+|.+ .+.
T Consensus         7 ~~~~~~L~C~v~~f~P~-~i~v~W~~~~~~~~~~~~~~~~~~~~dgty-~~~s~l~v~---~~~~~~ysC~V-~H~   76 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPK-DITVTWLKNGKEVTEGVETTPPPPNSDGTY-SVTSSLTVT---WNSGDEYSCRV-THE   76 (83)
T ss_dssp             STSEEEEEEEEEEEBSS-TEEEEEEETTEEETTTEEEEEEEEETTSEE-EEEEEEEEE---TTTTGGEEEEE-EET
T ss_pred             CCCCEEEEEEEEEEECC-CcEEEEEeccceeeeeeeecccccccccce-eeeEEEEec---CCCCCEEEEEE-EEC
Confidence            47899999999997765 5799999999887541111       1111 122233333   45566899999 554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd00096 Ig Immunoglobulin domain

Probab=97.65  E-value=0.00025  Score=43.97  Aligned_cols=61  Identities=28%  Similarity=0.566  Sum_probs=43.7

Q ss_pred             EEEEEEeecCCCCCCceEEEEECCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       125 v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +.|.|.+.+.+   ...+.|++++........    ...........|.+.++...|.|.|.|.+ .+.
T Consensus         1 ~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~-~~~   65 (74)
T cd00096           1 VTLTCLASGPP---PPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVA-SNS   65 (74)
T ss_pred             CEEEEEecCCC---CCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEE-ecC
Confidence            46899998844   689999998876544110    01111256678999999999999999999 554

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.64  E-value=0.00043  Score=46.13  Aligned_cols=77  Identities=8%  Similarity=0.109  Sum_probs=43.0

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeec-cc-cccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceee
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSI-TE-ATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQA  199 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~-~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  199 (323)
                      .....+.|.+.+..|  .++|+|+++.... .. ..............|.+.....+|...|+|++ .+.........++
T Consensus        15 ~~~~va~C~s~~gkP--~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v-~h~~l~~~~~~~~   91 (95)
T cd05719          15 EPVTVATCVSANGKP--PATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVV-SHPTLQEPQRFSV   91 (95)
T ss_pred             CccEEEEEECCCCcC--CCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEE-eCcccCCCeEEEE
Confidence            445677999976555  7899999972111 11 00001111123445666555556666999999 7774444444444


Q ss_pred             ee
Q psy15235        200 DF  201 (323)
Q Consensus       200 ~l  201 (323)
                      .|
T Consensus        92 ~L   93 (95)
T cd05719          92 TL   93 (95)
T ss_pred             Ee
Confidence            43

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.63  E-value=0.00027  Score=42.75  Aligned_cols=62  Identities=29%  Similarity=0.426  Sum_probs=42.5

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceee
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQA  199 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~  199 (323)
                      +..++|.|+|.+  .     .+|.|++ |..+..         ..+.++.+.....+-.|.|.|.+ ++.      ....
T Consensus         4 e~~~~V~L~C~~--~-----tsi~W~k-G~~~~~---------~~~~tlnLGs~~~DPRG~Y~C~~-s~~------~~~~   59 (69)
T cd07691           4 ESEGKVFLKCNG--A-----TNITWKK-GKEILE---------VSNTLLDLGSRINDPRGTYSCKE-SEP------NKEK   59 (69)
T ss_pred             ecCceEEEEecC--C-----CcEEEec-Cccccc---------ccccEEeccCcccCCCcceEecC-ccC------CCcE
Confidence            446789999955  2     3699999 555544         23567778888888899999999 552      2344


Q ss_pred             eeEEEe
Q psy15235        200 DFDVIM  205 (323)
Q Consensus       200 ~l~v~~  205 (323)
                      .|+|.+
T Consensus        60 ~LQVyY   65 (69)
T cd07691          60 TLQVYY   65 (69)
T ss_pred             EEEEEE
Confidence            555554

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.62  E-value=0.00027  Score=47.25  Aligned_cols=31  Identities=23%  Similarity=0.502  Sum_probs=25.1

Q ss_pred             EecCCcEEEEEEeecC-CCCCCceEEEEECCee
Q psy15235        119 FEYRVPFTLKCNVTSP-PPGDDYQIVWYKGNKS  150 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~-~~~~~~~i~W~~~~~~  150 (323)
                      +..++.++|.|.+.+. .|. ...++|.|+++.
T Consensus        11 l~~~~~~tLtC~v~gf~yP~-~i~v~W~r~~~~   42 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPE-GVNVTWTRGSGE   42 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCC-CcEEEEEECCeE
Confidence            4558999999999998 554 579999998743

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.61  E-value=0.00055  Score=47.80  Aligned_cols=73  Identities=12%  Similarity=0.109  Sum_probs=43.2

Q ss_pred             EeeceEEecCCcEEEEEEecc----CceEEEEEc--Ccccee---e-c---c---C--cceEEEeeee--CCeEEEEEee
Q psy15235         27 YFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQ---S-S---V---D--SGFAATANLT--EDNFKYSIHE   86 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~---~-~---~---~--~~~~~~~~~~--~~~~~l~i~~   86 (323)
                      ++....+.+|++|+|.|....    ...+.|||.  |+....   . .   .   .  ....+.....  ...+.|.|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            456678999999999998432    356999993  322211   0 0   0   0  0011222222  3445677776


Q ss_pred             cc--cCcceEEEeec
Q psy15235         87 AI--LESGYVQSSLF   99 (323)
Q Consensus        87 ~~--~~G~Y~C~~~~   99 (323)
                      +.  |+|.|.|....
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            65  49999999864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.60  E-value=0.00042  Score=46.21  Aligned_cols=70  Identities=21%  Similarity=0.438  Sum_probs=41.5

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++.++|.|.+.|+ |.. .++|.+||.. .............++ ....+.|++..-.......|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            45679999999886 544 6999999987 321111101100111 1234556666544333557999999976

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.60  E-value=0.0002  Score=46.26  Aligned_cols=61  Identities=26%  Similarity=0.539  Sum_probs=39.2

Q ss_pred             cEEEEEEeecCCCCCCceEEEEECCe--e---ccc---------cccccCcEE------eceeEEEEeeeecCCCeeEEE
Q psy15235        124 PFTLKCNVTSPPPGDDYQIVWYKGNK--S---ITE---------ATELSGRLT------QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       124 ~v~l~C~~~~~~~~~~~~i~W~~~~~--~---~~~---------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      +++|.|........ ...+.|++...  .   +..         .....+|+.      .....|.|.+++.+|+|.|.|
T Consensus         1 ~v~l~C~~~~~~~~-~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (81)
T smart00406        1 SVTLSCKASGFTFS-SYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYC   79 (81)
T ss_pred             CEEEEEEEeccccc-eeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence            47899988765521 24899988431  1   110         002234554      234679999999999999999


Q ss_pred             EE
Q psy15235        184 RL  185 (323)
Q Consensus       184 ~~  185 (323)
                      .+
T Consensus        80 ~v   81 (81)
T smart00406       80 AV   81 (81)
T ss_pred             cC
Confidence            64

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.58  E-value=0.00026  Score=47.94  Aligned_cols=67  Identities=13%  Similarity=0.307  Sum_probs=41.1

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc------c----cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE------L----SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~------~----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..+..++|.|.+.++.|. ...++|++||.++.....      .    ++.| .....|.+..-...+...|+|.+ .+.
T Consensus        14 ~~~~~~tL~C~a~gFyP~-~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy-~~~s~L~v~~~~w~~~~~ytC~V-~H~   90 (102)
T cd05768          14 SLQETATLTCLVKGFSPS-DIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESY-FLYSKLTVSAEDWNAGDVFTCVV-GHE   90 (102)
T ss_pred             CcCCceEEEEEEeeEeCC-CCEEEEEECCEECCcccccccCcccccCCCCeE-EEEEEEEEcHHHhcCCCcEEEEe-EeC
Confidence            347889999999998765 578999999988753100      0    0111 11223444222223455899999 555

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.56  E-value=0.001  Score=44.14  Aligned_cols=81  Identities=10%  Similarity=0.122  Sum_probs=48.1

Q ss_pred             eEEecCCcEEE-EEEeecCCCCCCceEEEEECCeeccc---cccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        117 KVFEYRVPFTL-KCNVTSPPPGDDYQIVWYKGNKSITE---ATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       117 ~~~~~g~~v~l-~C~~~~~~~~~~~~i~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      ..+.+|+.+.+ .|.+.+..|  ..+|+|+.+......   ....++.+ .-...+.+.....+|...++|.+ .+....
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkP--aa~IsW~~~~~G~~~~~~~~~~ngT~-TV~S~~~l~p~r~d~G~~vtC~V-~H~al~   86 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRP--AADVTWETNVYGTSESHSQEHPNGTT-TVTSEYIWVPSRHANGHPLTCVV-SHPALQ   86 (97)
T ss_pred             eEeecCcceeEEEEEccCCcc--CCEeEEeCCCCCccceeeecCCCCCE-EEEEEEEEEeCHHHCCcEEEEEE-eCcccC
Confidence            44667888888 998877666  689999986332221   00011222 33445666555566667999999 666433


Q ss_pred             CCCceeeee
Q psy15235        193 TTPLAQADF  201 (323)
Q Consensus       193 ~~~~~~~~l  201 (323)
                      ......+.|
T Consensus        87 ~~~~~~~~L   95 (97)
T cd07704          87 QDFRITHIL   95 (97)
T ss_pred             CCceeeEEe
Confidence            333333333

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.56  E-value=0.00034  Score=46.61  Aligned_cols=39  Identities=21%  Similarity=0.165  Sum_probs=28.2

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc----CceEEEEEcCcccee
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLNGRNINQ   62 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g~~~~~   62 (323)
                      .+..+++..+..++.++|.|.+.+    ...++|.+||..+..
T Consensus         4 ~v~~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~   46 (96)
T cd07697           4 TIFSPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL   46 (96)
T ss_pred             eEECCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence            444555555666788999999543    358999999987654

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.52  E-value=0.00047  Score=41.76  Aligned_cols=49  Identities=20%  Similarity=0.500  Sum_probs=36.7

Q ss_pred             CCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      ..+|.|+|.+    ...|.|++ |..+...              ...+|.+..+..+-.|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~--------------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEV--------------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Ccccccc--------------cccEEeccCcccCCCcceEecCcc
Confidence            4579999966    24599999 5544321              246788888888899999999887

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.50  E-value=0.00044  Score=47.74  Aligned_cols=66  Identities=15%  Similarity=0.261  Sum_probs=41.3

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeecccccccc--------CcEEeceeEEEEeeeecCC-CeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS--------GRLTQSKDSITIRKTTVDD-AGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~  189 (323)
                      .++.++|.|.+.++.|. ...++|++||..+.......        +.| .....|.+......+ ...|+|.+ .+.
T Consensus        17 ~~~~~tL~Cla~gFyP~-~I~V~W~kng~~l~~g~~~~~~~~~~~~gTY-s~~S~L~v~~~~w~~~~~~ytC~V-~H~   91 (115)
T cd05769          17 NKRKATLVCLATGFYPD-HVSLSWKVNGKEVTDGVATDPQALRENTSTY-SISSRLRVSATEWFNPRNTFTCIV-QFY   91 (115)
T ss_pred             cCCCcEEEEEEEeEeCC-CcEEEEEECCEECCCCcccccceecCCCCeE-EEEEEEEEChHHhccCCCeEEEEE-EEe
Confidence            46779999999998765 47999999998775411100        111 223344444333223 45899999 555

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.50  E-value=0.001  Score=44.22  Aligned_cols=72  Identities=13%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             CcEEEEEEeecCCCCCCceEEEEECCeecccc---ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235        123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA---TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ  198 (323)
Q Consensus       123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  198 (323)
                      ..+.+.|.+.+..|  ..+|+|+++.......   ...++.+ .....|.+.....+|...|+|++ .+.........+
T Consensus        16 ~~~va~C~s~~gkP--aa~IsW~~~~~g~~~~~~~~~~~gt~-tv~S~l~~~P~~~d~Gk~ltC~v-~h~al~~~~~~~   90 (95)
T cd07703          16 PVPVAKCVSANGRP--PARISWSSTLGGNANTTSKENGDGTV-TVTSEYSLVPTPEANGKEVTCKV-EHETLQEPQLLP   90 (95)
T ss_pred             ccEEEEEEcCCCCC--CcEEEEEcCCCCCeeEEEEeCCCCCE-EEEEEEEEecCHHHCCCEEEEEE-eCcccCCCeEEE
Confidence            44678998887666  7899999973211110   0001111 22345666555556666999999 776433333333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.48  E-value=0.0031  Score=52.62  Aligned_cols=124  Identities=18%  Similarity=0.278  Sum_probs=81.1

Q ss_pred             ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CCC--cEEEE
Q psy15235        164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PPP--TVEWR  240 (323)
Q Consensus       164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~W~  240 (323)
                      ....|.|..++...+|.|+-.. .+..+.......+++....+|.+.+.. ..+.+|+.+.-.|.+..+ |+-  .+.|+
T Consensus       180 p~~~L~I~slt~aTeGvY~Wr~-~~~~~~~~~~~~VtV~~yr~Psvsv~~-~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf  257 (466)
T PHA03270        180 PTQRLVIQELTLATQGMYYWAR-GPADRPHRYGTWTRVRMFRRPSLSIRP-HAVLEGEPFGATCVAANYYPGDRAAFRWF  257 (466)
T ss_pred             CcceEEEEEcccccceEEEEEE-ecCCCceeeeeEEEEEEecCCcccccC-CccccCCCceEEEEeeeecCCCceEEEEE
Confidence            4567999999999999999887 555444445556666666678776442 456789999999999655 443  59999


Q ss_pred             ECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCCC-eEEEEEEeecc
Q psy15235        241 IGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADR-GNYYCHGNNVA  289 (323)
Q Consensus       241 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~-G~y~C~a~n~~  289 (323)
                      .|+..+.... .+.......++-...++|++........ =+.+|.+.-..
T Consensus       258 ~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~r  308 (466)
T PHA03270        258 EGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHR  308 (466)
T ss_pred             eCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEcc
Confidence            9999874311 1111221122224556676665443322 27899987654

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.46  E-value=0.0024  Score=54.02  Aligned_cols=126  Identities=19%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CCC--cEEE
Q psy15235        163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PPP--TVEW  239 (323)
Q Consensus       163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~W  239 (323)
                      .....|.|.+++..++|.|.-++.....+.......+.+.+..+|.+.+. ...+.+|+.+.-.|.+..+ |+-  .+.|
T Consensus       286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~-p~PVL~Ge~YkAtC~vA~YYPp~SvrlrW  364 (566)
T PHA03269        286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVI-GDPVLLGNPYAAYCKVNKYYPPHSVIVKW  364 (566)
T ss_pred             CCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcccc-CCccccCCCceEEEEeeeecCCCceEEEE
Confidence            34567999999999999998776223323334556666776678876643 2457789999999999655 433  5999


Q ss_pred             EECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCC--CeEEEEEEeecc
Q psy15235        240 RIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMAD--RGNYYCHGNNVA  289 (323)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d--~G~y~C~a~n~~  289 (323)
                      +.|+..+....-+.......++ ....++|++......|  -=+.+|.+.--.
T Consensus       365 f~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~R  417 (566)
T PHA03269        365 TSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIR  417 (566)
T ss_pred             EeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEcc
Confidence            9998887632211111211222 1345667764433333  346799987654

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.45  E-value=0.00038  Score=41.84  Aligned_cols=51  Identities=18%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             ecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeec
Q psy15235         34 MEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLF   99 (323)
Q Consensus        34 ~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~   99 (323)
                      ..|.+|+|+|...... +.|.++++.+...             ...+.+.-.. ...|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~~~-i~W~~n~~~~~g~-------------~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGDD-IKWKKNDQVSQGS-------------DEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCCC-ceEEeCCccCCCC-------------CceEEeeccC-CCCceEEEEeCC
Confidence            4799999999854333 9999998655543             1111111111 349999999853

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02982 hypothetical protein; Provisional

Probab=97.44  E-value=0.0083  Score=44.96  Aligned_cols=119  Identities=8%  Similarity=0.073  Sum_probs=68.7

Q ss_pred             eceEEecCCcEEEEEEecc---CceEEEEEcCc-cceeec-------------cCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235         29 GDTEIMEGAPINISCILTI---FEQVKWQLNGR-NINQSS-------------VDSGFAATANLTEDNFKYSIHEAIL--   89 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~~---~~~v~W~~~g~-~~~~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~--   89 (323)
                      -++....|++|.|.|....   -...+|..+.. .+....             -+....+..+.+....+|+|.++..  
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            3466778999999999332   24688998542 233110             0112334555666677788877766  


Q ss_pred             CcceEEEeeccCCccce-eeeeee-CCceeE-EecCCc-EEEEEEeecCCCCCCceEEEEECCee
Q psy15235         90 ESGYVQSSLFIPRMNAI-TGNYDI-EPKYKV-FEYRVP-FTLKCNVTSPPPGDDYQIVWYKGNKS  150 (323)
Q Consensus        90 ~G~Y~C~~~~~~~~~~~-~~~~~~-~~~~~~-~~~g~~-v~l~C~~~~~~~~~~~~i~W~~~~~~  150 (323)
                      .|-|+|.+....+.... .--+.+ ..++.. ..+++. -.+.|-+-+..   ..-..|.-+|..
T Consensus       112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~e~nNeT~V~CyVgS~~---~dvp~W~V~GVv  173 (251)
T PHA02982        112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILYVVEEHNNETIITCFVGSKH---GDVPRFIVAGIV  173 (251)
T ss_pred             CCceEEEEecCCCchheeheeeeEecceEEEEEEecCCeEEEEEEEEecc---CCCccEEEeeEE
Confidence            88999999865433321 222333 222222 233444 45689886654   222389877764

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.43  E-value=0.00057  Score=45.60  Aligned_cols=70  Identities=17%  Similarity=0.272  Sum_probs=42.4

Q ss_pred             EeeCCeEEEEEEEecC--CC-CcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        217 VIEGEKLRLECLVVGS--PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~--p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ...+..++|.|.+.|.  |. ..++|.++|.. .   ..........++  ...+.|++..-..+....|+|.+.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~---~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E---AVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C---cEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            3357889999999874  43 36999999875 1   111111001111  2346676664444444569999999874

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.36  E-value=0.0057  Score=51.61  Aligned_cols=122  Identities=18%  Similarity=0.160  Sum_probs=78.7

Q ss_pred             eEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CCC--cEEEEEC
Q psy15235        166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PPP--TVEWRIG  242 (323)
Q Consensus       166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~W~~~  242 (323)
                      ..|.|..++...+|.|+-.. .+..+.......+.+....+|.+.+. ...+.+|+.+.-.|.+..+ |+-  .+.|+.|
T Consensus       198 ~~LtI~sltaaTeGvYtWr~-~~~n~t~~~~~~VtV~~yr~Psvsv~-~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSL-YAKNGTLVNSTSVTVSTYNAPLVDLS-VHPSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             cceEEEecchhhceEEEEEE-ecCCCceeeeeEEEEEEecCCccccc-CCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            55999999999999998766 45433333445555555667877644 2457789999999999655 433  5999999


Q ss_pred             Ceeeec-cCCeeeeecCCCCC-CcceeEEEeecCcCC-CeEEEEEEeecc
Q psy15235        243 NDTYFR-SQGRIKLSEHPEKG-TANSVLQIDEATMAD-RGNYYCHGNNVA  289 (323)
Q Consensus       243 ~~~~~~-~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d-~G~y~C~a~n~~  289 (323)
                      +..+.. ..-+.......++. ...++|++......+ -=+.+|.+.--.
T Consensus       276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r  325 (486)
T PHA03273        276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR  325 (486)
T ss_pred             CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence            998762 21111111112222 346777777654433 347899987654

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.33  E-value=0.0012  Score=43.56  Aligned_cols=66  Identities=26%  Similarity=0.412  Sum_probs=43.9

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-----EeceeEEEEeeeecCCCe-eEEEEEE
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-----TQSKDSITIRKTTVDDAG-QYSCRLI  186 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G-~y~C~~~  186 (323)
                      ...|..+++.|.+.+..|.+...+.|+++...+... .+.+..     ......+++... ++|.| .|+|+|.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~-~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~   83 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK-SFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAK   83 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceeccc-ccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEE
Confidence            357999999999998777556899999876665441 111111     123345566554 56666 9999994

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.28  E-value=0.0016  Score=43.43  Aligned_cols=65  Identities=18%  Similarity=0.366  Sum_probs=39.2

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .++.++|.|.+.++.|. ...++|++||.. ......       ++.| .....|++..-.-.....|+|.+ .+.
T Consensus        15 ~~~~~~L~C~a~gFyP~-~i~vtW~k~g~~-~~~~~~~~~~~~~dgty-~~~s~L~v~~~~w~~~~~ytC~V-~H~   86 (95)
T cd04985          15 SSDSVTLGCLATGFLPE-PVTFTWNSGSNS-TSGVKTYPAVLQSGGLY-TASSQLTVPASEWKGKESFYCKV-EHP   86 (95)
T ss_pred             CCCcEEEEEEEeeEECC-CcEEEEeECCEE-CCCcEECCCEeCCCCCE-EEEEEEEEeHHHcCCCCcEEEEE-EeC
Confidence            36679999999998766 579999999987 331111       1112 11223333332111245799999 555

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.26  E-value=0.013  Score=48.71  Aligned_cols=126  Identities=16%  Similarity=0.195  Sum_probs=75.7

Q ss_pred             eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe-cceeeeeceeEEeeCCeEEEEEEEecC-CCC--cEE
Q psy15235        163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM-KPTAKLVETLTVIEGEKLRLECLVVGS-PPP--TVE  238 (323)
Q Consensus       163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~  238 (323)
                      ..+..+.|.++...++|.|+... .+.....-......+.+.. +|.+.+. ...+..|+...-.|.+..+ |+-  .+.
T Consensus       204 t~~m~v~I~svD~~t~Gy~~v~~-~d~~N~~i~e~~~~~~v~~RPPsVsV~-a~PVL~Ge~YkAtC~vAnYYPP~Svrlr  281 (490)
T PHA03271        204 TNTMGVEIRNVDYADNGYIQVIM-RDPFNRPLLDKHIYIRVCQRPASVDVL-APPVLSGENYKASCIVRHFYPPGSVYVS  281 (490)
T ss_pred             cceeeEEEEEeecccceEEEEEe-cCCCCCccccceEEEEEEecCCCcccc-CCccccCCCceEEEEeeeecCCCceEEE
Confidence            45678999999999999775544 4433333344455555555 4445533 2456789999999999665 433  599


Q ss_pred             EEECCeeeeccCCeeeee---cCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        239 WRIGNDTYFRSQGRIKLS---EHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       239 W~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      |++||..+.....+-...   .........++|++.+...+.-=+.+|.+.-..+
T Consensus       282 Wf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd  336 (490)
T PHA03271        282 WRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG  336 (490)
T ss_pred             EEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence            999998775332211111   1111112345666655433333479999886553

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.22  E-value=0.0025  Score=43.49  Aligned_cols=73  Identities=11%  Similarity=0.214  Sum_probs=48.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe-eccc----------cccccCcEE------eceeEEEEeeeec
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-SITE----------ATELSGRLT------QSKDSITIRKTTV  175 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~-~~~~----------~~~~~~~~~------~~~~~l~i~~~~~  175 (323)
                      ++...++..|..++|.|.+.+..-..+..+.|+|... .+..          ......++.      .....|.+.+++.
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a   83 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA   83 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence            3445567788999999999774322136899998321 2110          011233332      4567899999999


Q ss_pred             CCCeeEEEEE
Q psy15235        176 DDAGQYSCRL  185 (323)
Q Consensus       176 ~d~G~y~C~~  185 (323)
                      +|++.|.|..
T Consensus        84 ~DTa~Y~Ca~   93 (115)
T cd05721          84 NQTDIYFCKI   93 (115)
T ss_pred             HHCeEEEEEe
Confidence            9999999977

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.20  E-value=0.0034  Score=42.84  Aligned_cols=73  Identities=11%  Similarity=0.109  Sum_probs=47.8

Q ss_pred             eeEEeeCCeEEEEEEEecCC--C-CcEEEEECCe-eee-------------ccCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--P-PTVEWRIGND-TYF-------------RSQGRIKLSEHPEKGTANSVLQIDEATMA  276 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~-~~~~W~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  276 (323)
                      ...+..|..++|+|.+.|.-  . -.+.|.|.-. .+.             ....++..+.  +.....-.|+|.+++.+
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~--~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDG--TLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeE--eCCCCEEEEEEcCCCHH
Confidence            45577889999999997753  2 4689987321 211             1223333331  12224678999999999


Q ss_pred             CCeEEEEEEeec
Q psy15235        277 DRGNYYCHGNNV  288 (323)
Q Consensus       277 d~G~y~C~a~n~  288 (323)
                      |.+.|.|....-
T Consensus        85 DTa~Y~Ca~e~m   96 (115)
T cd05721          85 QTDIYFCKIELM   96 (115)
T ss_pred             HCeEEEEEeeec
Confidence            999999976543

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA02633 hypothetical protein; Provisional

Probab=97.20  E-value=0.0009  Score=39.45  Aligned_cols=42  Identities=17%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      ....|.|-++..+|+|.|.|..+|..    .....++.|.|..+..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t----~c~~~si~l~V~~~~~   57 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNET----YSDMMKFDLCICLRIE   57 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCC----eeEEEEEEEEEeeccc
Confidence            46779999999999999999999887    4477888888876654

>KOG1480|consensus

Probab=97.14  E-value=0.00063  Score=60.62  Aligned_cols=154  Identities=17%  Similarity=0.306  Sum_probs=92.0

Q ss_pred             EEeeceEEecCCcEEEEEEeccCceEEEEEcCccceee------c--cCcceEEEeeeeCCeEEEEEeeccc---CcceE
Q psy15235         26 TYFGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQS------S--VDSGFAATANLTEDNFKYSIHEAIL---ESGYV   94 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~------~--~~~~~~~~~~~~~~~~~l~i~~~~~---~G~Y~   94 (323)
                      ..+.+..+..|.++.|.|.+++.+++...-++.-+...      .  ...+...    ......+....+.+   -..|.
T Consensus        29 ~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~----~~~si~Isr~~v~~~~~~~d~~  104 (909)
T KOG1480|consen   29 TEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGV----REVSIDISRQQVETSGGPEDYW  104 (909)
T ss_pred             ecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeE----EeeeeeeehhhhhcccCcccee
Confidence            45677889999999999998887766544443333222      0  0011110    01111222223333   45677


Q ss_pred             EEeec--cCCcc----------ceeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235         95 QSSLF--IPRMN----------AITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT  162 (323)
Q Consensus        95 C~~~~--~~~~~----------~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~  162 (323)
                      |+-..  ..+..          .+...+.-.+.-..+..+..+.+.|...-..|  ...++|++++..+.+    ...+.
T Consensus       105 cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~p--aae~~w~k~e~~~~p----d~n~~  178 (909)
T KOG1480|consen  105 CQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDP--KAEVEWLKNEVVIDP----DANVI  178 (909)
T ss_pred             eeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccch--hhhhhccccCCCCCc----cccch
Confidence            76532  22211          01111222455555777888889987654443  679999999988766    33332


Q ss_pred             -eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        163 -QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       163 -~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                       .....+.+..+...|.|+|+|++ .|..
T Consensus       179 ~~~d~~li~~~arlsd~~nytc~a-~ni~  206 (909)
T KOG1480|consen  179 RASDHNLIISQARLSDSGNYTCEA-TNIV  206 (909)
T ss_pred             hhhcCCccccchhhhhcccceeee-ehhh
Confidence             56678899999999999999999 6663

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.08  E-value=0.0022  Score=42.81  Aligned_cols=29  Identities=14%  Similarity=0.345  Sum_probs=24.4

Q ss_pred             cCCcEEEEEEeecCC-CCCCceEEEEECCee
Q psy15235        121 YRVPFTLKCNVTSPP-PGDDYQIVWYKGNKS  150 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~-~~~~~~i~W~~~~~~  150 (323)
                      .+..++|.|.+.++. |. ...|+|.++|..
T Consensus        18 ~~~~atLtClV~~f~~P~-~i~V~W~~~g~~   47 (99)
T cd04986          18 LGSSASLTCTLSGLRDPE-GAVFTWTPSGGK   47 (99)
T ss_pred             cCCccEEEEEEeccCCCC-CeEEEEEECCcc
Confidence            578899999999976 65 579999999865

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.05  E-value=0.0022  Score=44.79  Aligned_cols=71  Identities=15%  Similarity=0.225  Sum_probs=41.5

Q ss_pred             EecCCcEEEEEEecc-------CceEEEEEcCccceeeccCcc---------eEEEeeeeCCeEEEEEeeccc-CcceEE
Q psy15235         33 IMEGAPINISCILTI-------FEQVKWQLNGRNINQSSVDSG---------FAATANLTEDNFKYSIHEAIL-ESGYVQ   95 (323)
Q Consensus        33 v~~G~~v~L~C~~~~-------~~~v~W~~~g~~~~~~~~~~~---------~~~~~~~~~~~~~l~i~~~~~-~G~Y~C   95 (323)
                      ..=+++|.|+|.+.+       ...+.|.++|+.+....-...         ..+ .....|+..|.+..... .|.|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAVEGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH-EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhccccceEE
Confidence            345899999999654       346999998877655421111         112 22337777788887555 999999


Q ss_pred             EeeccCCcc
Q psy15235         96 SSLFIPRMN  104 (323)
Q Consensus        96 ~~~~~~~~~  104 (323)
                      .+....+..
T Consensus       103 eVt~~~~eg  111 (130)
T PF08204_consen  103 EVTELSREG  111 (130)
T ss_dssp             EEEETTEEE
T ss_pred             EEEecCCCc
Confidence            997665543

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.93  E-value=0.0077  Score=39.84  Aligned_cols=73  Identities=15%  Similarity=0.175  Sum_probs=44.9

Q ss_pred             EEeeCCeEEEEEEEec-CCC--CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe-EEEEEEeeccc
Q psy15235        216 TVIEGEKLRLECLVVG-SPP--PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVAT  290 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g-~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~g  290 (323)
                      .+..|..+++.|.+.+ .|.  ..+.|++....+.+..-...... .........+++... .+|.| +|.|.|.=..+
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~-ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~   87 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDK-KSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID   87 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceeccccccccccc-CCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence            3478999999999954 565  47999987766643211100000 000113466777664 66666 89999986653

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.82  E-value=0.0022  Score=49.95  Aligned_cols=50  Identities=16%  Similarity=0.254  Sum_probs=42.0

Q ss_pred             CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       233 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ..|.+.|..++......+.+.+++       ..+.|.+.+..+.++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT-------~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNIT-------ETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEc-------cCceEEeeccccccCCceEEEEEEEe
Confidence            478999998776665566777877       47889999999999999999999765

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.75  E-value=0.0028  Score=44.24  Aligned_cols=78  Identities=23%  Similarity=0.465  Sum_probs=44.7

Q ss_pred             eCCeEEEEEEEecC-----CCCcEEEEECCeeeeccCC---ee--------eeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235        219 EGEKLRLECLVVGS-----PPPTVEWRIGNDTYFRSQG---RI--------KLSEHPEKGTANSVLQIDEATMADRGNYY  282 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-----p~~~~~W~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~L~i~~v~~~d~G~y~  282 (323)
                      -.+++.|.|.+...     +...++|.+++..+..-++   +.        .+.+..   ...+.|.+...+.- .|+|+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~---kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELL---KGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGG---GTB--EEEEHHHHH--EEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhh---CCCEEEEEcchhcc-ccceE
Confidence            47899999999642     2235999999887642211   11        111000   13466888875554 89999


Q ss_pred             EEEeecccCCCCCceeEEEEEE
Q psy15235        283 CHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       283 C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |.+......    .+..+.|+.
T Consensus       102 CeVt~~~~e----ge~~i~Lk~  119 (130)
T PF08204_consen  102 CEVTELSRE----GETTIELKY  119 (130)
T ss_dssp             EEEEETTEE----EEEEEEEEE
T ss_pred             EEEEecCCC----ceEEEEEEE
Confidence            999988733    666666665

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02982 hypothetical protein; Provisional

Probab=96.63  E-value=0.052  Score=40.89  Aligned_cols=118  Identities=10%  Similarity=0.210  Sum_probs=68.6

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCe-eccc----------ccc----ccCcEE----eceeEEEEeeeecCCCe
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-SITE----------ATE----LSGRLT----QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~-~~~~----------~~~----~~~~~~----~~~~~l~i~~~~~~d~G  179 (323)
                      +..+++|.|+|..+....  ..+..|+++.. .+..          ...    .+..+.    ...++|+|.++..+..|
T Consensus        36 a~vd~~V~L~C~~~~~~~--i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         36 ATVDQEVKLQCLFKDADE--ISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             ccCCCcEEEEecCCCcch--hhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            556899999998655442  45788988543 2221          000    011111    66789999999999999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEee-CCeEEEEEEEecCCCCcEEEEECCee
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIE-GEKLRLECLVVGSPPPTVEWRIGNDT  245 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~-g~~~~l~C~~~g~p~~~~~W~~~~~~  245 (323)
                      -|+|++.+..  .........+.|+....+     ..+.+ ...-.+.|-+.....+...|..+|-.
T Consensus       114 CYtc~~ks~~--~k~E~c~kCl~V~~~~V~-----~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        114 CFTCEAKDAE--GKEETCEKCLEIQKEDIL-----YVVEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             ceEEEEecCC--CchheeheeeeEecceEE-----EEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            9999994333  222333444555321111     11122 33456888885443333489887764

>PHA03042 CD47-like protein; Provisional

Probab=96.36  E-value=0.028  Score=44.13  Aligned_cols=71  Identities=15%  Similarity=0.294  Sum_probs=47.6

Q ss_pred             eCCeEEEEEEEecC-----CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235        219 EGEKLRLECLVVGS-----PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS  293 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~  293 (323)
                      -.+++.+.|.++.-     ....++|..++..+...++.           +.+.|.++.. ..-.|+|+|+|.+...+  
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------n~aSL~~~f~-~~l~GNYTCEv~~l~n~--   95 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------NTSSLKFNFS-KNLSGNYTCEAINKFNK--   95 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------cceEEEEecc-ccCCCceeEEEeecccC--
Confidence            47889999999632     24469999999877533222           2456766643 34489999999987733  


Q ss_pred             CCceeEEEEEEc
Q psy15235        294 QPNEAFVYVRVK  305 (323)
Q Consensus       294 ~~~~~~~~l~v~  305 (323)
                        ....+.|+..
T Consensus        96 --gk~~IeLk~~  105 (286)
T PHA03042         96 --IKNTIELQYV  105 (286)
T ss_pred             --ccEEEEEEEE
Confidence              4455555544

>PHA02633 hypothetical protein; Provisional

Probab=96.20  E-value=0.014  Score=34.57  Aligned_cols=40  Identities=18%  Similarity=0.366  Sum_probs=28.8

Q ss_pred             ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec
Q psy15235        164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK  206 (323)
Q Consensus       164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~  206 (323)
                      ....|.|-++..+|+|.|.|.. .|.  ......++.++|...
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~-rn~--t~c~~~si~l~V~~~   55 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCIT-KNE--TYSDMMKFDLCICLR   55 (63)
T ss_pred             ccccEEEeccccccCcEEEEEE-cCC--CeeEEEEEEEEEeec
Confidence            4567899999999999999999 666  333444555555543

>PHA03042 CD47-like protein; Provisional

Probab=95.74  E-value=0.073  Score=41.95  Aligned_cols=59  Identities=14%  Similarity=0.204  Sum_probs=40.3

Q ss_pred             EecCCcEEEEEEecc-------CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeeccCC
Q psy15235         33 IMEGAPINISCILTI-------FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLFIPR  102 (323)
Q Consensus        33 v~~G~~v~L~C~~~~-------~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~~~~  102 (323)
                      -.=++++.++|..+.       ...+.|.++++.+...+-.           ...+|....... .|.|+|++.+..+
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------n~aSL~~~f~~~l~GNYTCEv~~l~n   94 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------NTSSLKFNFSKNLSGNYTCEAINKFN   94 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------cceEEEEeccccCCCceeEEEeeccc
Confidence            345899999999543       3469999999887765111           113455555445 9999999976443

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.85  E-value=0.043  Score=43.07  Aligned_cols=44  Identities=18%  Similarity=0.428  Sum_probs=34.9

Q ss_pred             CceEEEEECC-eeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        139 DYQIVWYKGN-KSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       139 ~~~i~W~~~~-~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .|.+.|..++ ..+..    ..++. ..++.|.+.+....++|.|+|..+
T Consensus        12 DP~y~W~GP~g~~l~g----n~~~nIT~TG~L~~~~F~esmSG~YTCtLs   57 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSG----NSYVNITETGKLMFKNFQESMSGSYTCTLS   57 (271)
T ss_pred             CCceEEECCCCcccCC----CCeEEEccCceEEeeccccccCCceEEEEE
Confidence            5799999854 45544    44555 677889999999999999999994

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.73  E-value=0.11  Score=34.78  Aligned_cols=38  Identities=26%  Similarity=0.195  Sum_probs=28.8

Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      .+.+|.|+.++..|+|.|.-++.+..|..   ....+.|.|
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V---~~~~FqVsV  106 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKV---CTKNFQVSV  106 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCE---EEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcE---EEEEEEEEe
Confidence            47889999999999999999999999762   445555554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=94.43  E-value=1.7  Score=33.39  Aligned_cols=101  Identities=15%  Similarity=0.263  Sum_probs=50.6

Q ss_pred             CceEEEEECCeeccccccccCcEE------eceeEEEEee-eecCCCeeEEEEEEcCCCCCCCC--ceeeeeEEEeccee
Q psy15235        139 DYQIVWYKGNKSITEATELSGRLT------QSKDSITIRK-TTVDDAGQYSCRLIDPKSTNTTP--LAQADFDVIMKPTA  209 (323)
Q Consensus       139 ~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~~--~~~~~l~v~~~p~~  209 (323)
                      ...++|+.||.++...........      .....|++.. ...+..-..+|.+.-........  .+...-.|..+|.+
T Consensus         6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~v   85 (211)
T PF02124_consen    6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRV   85 (211)
T ss_pred             cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEE
Confidence            578999999997764111111111      1223344422 12223346899986333211111  22333334456655


Q ss_pred             eeeceeEEeeCCeEEEEEEEecCC--CCcEEEEECCeee
Q psy15235        210 KLVETLTVIEGEKLRLECLVVGSP--PPTVEWRIGNDTY  246 (323)
Q Consensus       210 ~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~  246 (323)
                      ++    ..   ..-...|.+.--|  ...+.|.-++...
T Consensus        86 sv----~F---~~g~AVC~A~CVP~~~v~l~W~v~d~~~  117 (211)
T PF02124_consen   86 SV----RF---EDGYAVCTARCVPRGNVTLRWSVGDDPS  117 (211)
T ss_pred             EE----Ee---cCCEEEEEcceeeCCCeEEEEEECCccC
Confidence            53    12   2234567774444  3689999887654

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.14  E-value=0.3  Score=32.73  Aligned_cols=46  Identities=13%  Similarity=0.379  Sum_probs=29.8

Q ss_pred             EEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        142 IVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       142 i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++|..+...... ..++.++.  ..+..|.|..++..|+|.|.-++ ++.
T Consensus        46 ltW~n~~~~~~~-~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEv-T~~   93 (108)
T PF11465_consen   46 LTWKNDSTPSYN-SSFNNRFNFTSENLALLIKAAQPQDSGLYCLEV-TNE   93 (108)
T ss_dssp             EEEETTEEEESS-TTHHHHEEEETTTTEEEESS-SGGG-EEEEEEE-EET
T ss_pred             EEEcCCCccccc-ccccceEeeeccCceEEEeecCcccCceEEEEE-EcC
Confidence            455444333322 23455655  67789999999999999999999 554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.84  E-value=0.37  Score=31.57  Aligned_cols=68  Identities=21%  Similarity=0.349  Sum_probs=44.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCC--CCCceEEEEECCeeccccccccCcEE---eceeEEEEeeeecCCCeeEEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPP--GDDYQIVWYKGNKSITEATELSGRLT---QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~--~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      .|+..++..|.++++.|.....-+  .....|.|..++..++.     .++.   .....+++.+.....+-.|.|..
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~-----~qy~~in~~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG-----SQYRVINDTVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC-----GCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh-----hHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence            345566789999999999865422  11568999999887664     3333   44577888887766666788875

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=93.71  E-value=0.31  Score=40.25  Aligned_cols=21  Identities=19%  Similarity=0.434  Sum_probs=17.3

Q ss_pred             eEEEEEEEecC-CCC-cEEEEEC
Q psy15235        222 KLRLECLVVGS-PPP-TVEWRIG  242 (323)
Q Consensus       222 ~~~l~C~~~g~-p~~-~~~W~~~  242 (323)
                      .++|.|.+.|. |.. .++|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999886 543 6999999

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.62  E-value=0.65  Score=29.71  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=19.2

Q ss_pred             ceeEEEeecCcCCCeEEEEEEe-ecc
Q psy15235        265 NSVLQIDEATMADRGNYYCHGN-NVA  289 (323)
Q Consensus       265 ~~~L~i~~v~~~d~G~y~C~a~-n~~  289 (323)
                      ...+.......+|+|.+.|.|+ +..
T Consensus        42 ~~~~~~~~~~~~d~G~w~C~a~~~~~   67 (80)
T PF05790_consen   42 KKLVSTFTPTTEDSGTWVCTASDNEP   67 (80)
T ss_dssp             SSEEEEESBTCGGSEEEEEEEEECTT
T ss_pred             ceEEEEecCCCCCCEEEEEEEcCCce
Confidence            4556677788899999999994 443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG4597|consensus

Probab=93.31  E-value=0.13  Score=43.88  Aligned_cols=85  Identities=19%  Similarity=0.051  Sum_probs=58.5

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEE---CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRI---GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .-.+..+++..++|-+.|.|.+.|.|.+   |...+... +.-...  .--......|.|-+....|.|-|+|.+.|..|
T Consensus       205 ~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~~e--~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g  281 (560)
T KOG4597|consen  205 EWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQTVE--NPVVTSTCQLVICNEWQADAGWYTCSARCGAG  281 (560)
T ss_pred             hhhcccchhhcccccccCCcCceeeeehhhccccceeec-CccccC--CcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence            3446679999999999999999999975   33322211 111100  00112467899999999999999999999996


Q ss_pred             CCCCCceeEEEEEEc
Q psy15235        291 RNSQPNEAFVYVRVK  305 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~  305 (323)
                      -    ..+.+.+.+.
T Consensus       282 ~----~~rdv~c~s~  292 (560)
T KOG4597|consen  282 F----LRRDVPCSSV  292 (560)
T ss_pred             e----eeccceeeee
Confidence            5    5666655543

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=92.86  E-value=0.81  Score=29.97  Aligned_cols=68  Identities=9%  Similarity=0.252  Sum_probs=40.3

Q ss_pred             eeceeEEeeCCeEEEEEEEecC-----CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS-----PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG  285 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a  285 (323)
                      .++...+..|++++..|.....     ....+.|..|+..+..  .++....  +   ..+.+++.+......-.|.|..
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~--~qy~~in--~---~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG--SQYRVIN--D---TVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC--GCEEEES--T---TEEEEEESS--SSEEEEEEEEE
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh--hHcceeC--C---eEEEEEEccCCCCCceEEEEEE
Confidence            3445677899999999999422     3447999998885543  2332221  0   2477777776655444566653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=92.79  E-value=0.74  Score=30.18  Aligned_cols=72  Identities=18%  Similarity=0.263  Sum_probs=42.4

Q ss_pred             eEEEEEEE-ecCCCCcEEEEEC--CeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccCCCCCce
Q psy15235        222 KLRLECLV-VGSPPPTVEWRIG--NDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE  297 (323)
Q Consensus       222 ~~~l~C~~-~g~p~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~  297 (323)
                      .+.-.|.+ .|.|++.|+|.-+  |..      ..+......+. ...+.+.+-.....|.-+.+|.+.+..    .+-.
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~l~G~~------etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~----~~~~   91 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTRLKGEA------EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRN----DRFT   91 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEccCCCce------eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecc----cccc
Confidence            35567886 8889999999742  211      11111111111 134666666777777889999999975    2244


Q ss_pred             eEEEEE
Q psy15235        298 AFVYVR  303 (323)
Q Consensus       298 ~~~~l~  303 (323)
                      ..+.|.
T Consensus        92 ~~~~L~   97 (98)
T cd05890          92 DSVTLN   97 (98)
T ss_pred             ccEEec
Confidence            455543

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>KOG0613|consensus

Probab=92.64  E-value=0.25  Score=47.56  Aligned_cols=163  Identities=11%  Similarity=0.048  Sum_probs=92.6

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCc
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL  196 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  196 (323)
                      ...+..+++.|...+...  .-.+.|+++.............+.  .....+.+..+...+.+.|.|.+ .|..+.....
T Consensus       346 a~d~~~v~m~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a-~n~~g~~~~~  422 (1205)
T KOG0613|consen  346 ARDNTLVEMPTALSGTQK--PDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPA-VNKGGTEQTI  422 (1205)
T ss_pred             cccCcceeecccccCCcC--CchheeecccccccccccccccccccccCcchhhhhcCcccccccccce-eccCCccccc
Confidence            445677899999988773  235999987665544110011111  44567788888899999999999 6775443332


Q ss_pred             eeeeeEEEe----cceeeeeceeEEeeC--CeEEEEEEEecCCCC--cEEEEECCeeeeccCCeeeeecCCCCCCcceeE
Q psy15235        197 AQADFDVIM----KPTAKLVETLTVIEG--EKLRLECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL  268 (323)
Q Consensus       197 ~~~~l~v~~----~p~~~~~~~~~~~~g--~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  268 (323)
                      ....+....    ++.+..........+  +.+.+.|...+++-+  .++|++++.............       .-.+|
T Consensus       423 ~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~-------~~tsl  495 (1205)
T KOG0613|consen  423 AESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRD-------VLTSL  495 (1205)
T ss_pred             chhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccccccccccc-------chhhh
Confidence            222222211    222222223333334  778889988777644  466666554433211111111       24567


Q ss_pred             EEeecCcCCCeEEEEEEeecccC
Q psy15235        269 QIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       269 ~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .+.-....|.+.|.-......|.
T Consensus       496 Llk~~~~~~~A~~~~a~~~~~~k  518 (1205)
T KOG0613|consen  496 LLKVASLSDGAQYTRALRTLQGK  518 (1205)
T ss_pred             eeeccCCCccchhhhhhhccCCC
Confidence            77777778888885444444433

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=92.52  E-value=0.61  Score=38.62  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.2

Q ss_pred             cEEEEEEeecCCCCCCceEEEEEC
Q psy15235        124 PFTLKCNVTSPPPGDDYQIVWYKG  147 (323)
Q Consensus       124 ~v~l~C~~~~~~~~~~~~i~W~~~  147 (323)
                      .++|+|.+.|+.|. ...+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~-~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPS-SVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCC-ccEEEEEec
Confidence            57999999998776 579999999

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=92.52  E-value=3.9  Score=31.53  Aligned_cols=98  Identities=10%  Similarity=0.140  Sum_probs=51.2

Q ss_pred             ceEEEEEcCccceeeccCcceEEEeeeeC---CeEEEEEe-eccc--CcceEEEeeccCC-c------cceeeeeeeCCc
Q psy15235         49 EQVKWQLNGRNINQSSVDSGFAATANLTE---DNFKYSIH-EAIL--ESGYVQSSLFIPR-M------NAITGNYDIEPK  115 (323)
Q Consensus        49 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~---~~~~l~i~-~~~~--~G~Y~C~~~~~~~-~------~~~~~~~~~~~~  115 (323)
                      ..++|+.||..+..........  ...++   ....|.+. ...+  .=..+|++.=... .      ....|.+-.+|.
T Consensus         7 ~~~~Wf~dg~~v~~~~~~~~~~--~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~   84 (211)
T PF02124_consen    7 VRFRWFEDGNPVEPRFIRDSSQ--VWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPR   84 (211)
T ss_pred             EEEEEEECCEeCCccceeeEEE--EecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCE
Confidence            4799999998777542222221  11211   12233331 1122  5667998752211 1      123344444677


Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI  151 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~  151 (323)
                      +.+..++.  ...|.+.--|.. ...+.|.-++...
T Consensus        85 vsv~F~~g--~AVC~A~CVP~~-~v~l~W~v~d~~~  117 (211)
T PF02124_consen   85 VSVRFEDG--YAVCTARCVPRG-NVTLRWSVGDDPS  117 (211)
T ss_pred             EEEEecCC--EEEEEcceeeCC-CeEEEEEECCccC
Confidence            66644433  455777655432 3689999877653

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=92.25  E-value=6.4  Score=33.36  Aligned_cols=122  Identities=12%  Similarity=0.203  Sum_probs=66.1

Q ss_pred             ceEEecCCcEEEEEEec-----cCceEEEEEcCccceee------------c--cCcceEEE------eeeeCCeEEEEE
Q psy15235         30 DTEIMEGAPINISCILT-----IFEQVKWQLNGRNINQS------------S--VDSGFAAT------ANLTEDNFKYSI   84 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~~-----~~~~v~W~~~g~~~~~~------------~--~~~~~~~~------~~~~~~~~~l~i   84 (323)
                      ...+..|..|.|.|...     .-....|+..|-++.+-            .  .++...+.      .+...+.+++..
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            45677799999999932     23578999866444321            0  11111111      112234444444


Q ss_pred             eecccCcceEEEeeccCCccceeeeeeeCCceeE--EecCCcE-EEEEEeecCCCCCCceEEEEECCeecc
Q psy15235         85 HEAILESGYVQSSLFIPRMNAITGNYDIEPKYKV--FEYRVPF-TLKCNVTSPPPGDDYQIVWYKGNKSIT  152 (323)
Q Consensus        85 ~~~~~~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~v-~l~C~~~~~~~~~~~~i~W~~~~~~~~  152 (323)
                      ..+...|-|.|++........-..-+.+..++..  ..+|+.. ...|-+-+.... ++++.|..+|....
T Consensus       353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~~e~~n~T~V~Cyv~sy~~k-p~si~wkvnGV~~~  422 (500)
T PHA02914        353 AHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWNTEGDNETKVACYAAQYDMQ-PFSILWKSNGVSFG  422 (500)
T ss_pred             EEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEEeccCceEEEEEEEEecccC-CceeEEEEccEEec
Confidence            4444599999999765433322222223223333  2234444 457887665211 56899998886654

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=90.24  E-value=11  Score=32.14  Aligned_cols=159  Identities=15%  Similarity=0.205  Sum_probs=89.1

Q ss_pred             EecCCcEEEEEEeec--CCCCCCceEEEEECCeeccc------------cc-cccCcEE----------eceeEEEEeee
Q psy15235        119 FEYRVPFTLKCNVTS--PPPGDDYQIVWYKGNKSITE------------AT-ELSGRLT----------QSKDSITIRKT  173 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~--~~~~~~~~i~W~~~~~~~~~------------~~-~~~~~~~----------~~~~~l~i~~~  173 (323)
                      ++.|..|.|.|...-  +..  ...+.|+--|-++.+            .. ..++.+.          ....+|+|.++
T Consensus       276 ~~~g~~v~~~c~~s~~~~e~--i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        276 LEVGKRVDIECFFSMCGNEN--ISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eccCcEEEEEEEEeecCCcc--cccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            556999999998754  222  568899876654432            00 0011111          34578999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeC-CeEEEEEEEecC--CCCcEEEEECCeeeeccC
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEG-EKLRLECLVVGS--PPPTVEWRIGNDTYFRSQ  250 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g-~~~~l~C~~~g~--p~~~~~W~~~~~~~~~~~  250 (323)
                      ..+.+|-|.|++. ..  .........|.|.......     -..+| ..-.+.|-+...  .++.+.|..+|-..... 
T Consensus       354 ~I~N~GCY~~~a~-~g--~~~~ec~~Cl~V~d~V~f~-----W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~-  424 (500)
T PHA02914        354 HINNAGCYEAQAF-MG--KFKEECRHCFKVADHVFFK-----WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGE-  424 (500)
T ss_pred             EEEcCCceEEEEe-cC--cchhhhhhheEeccEEEEE-----EEeccCceEEEEEEEEecccCCceeEEEEccEEecCe-
Confidence            9999999999994 33  2223333334443222111     01122 344578888443  45579999988765421 


Q ss_pred             Ceeeeec-C---CCCCCcceeEEEeecCcCC-CeEEEEEEeecc
Q psy15235        251 GRIKLSE-H---PEKGTANSVLQIDEATMAD-RGNYYCHGNNVA  289 (323)
Q Consensus       251 ~~~~~~~-~---~~~~~~~~~L~i~~v~~~d-~G~y~C~a~n~~  289 (323)
                       .+.-.. .   --.+.....+.|.+-...| --.-.|...-..
T Consensus       425 -~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~  467 (500)
T PHA02914        425 -IADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQ  467 (500)
T ss_pred             -ecCcccccccccccccceEEEEEecccCccccccceEEEecCC
Confidence             110000 0   0012235667777766666 345678877655

>KOG0613|consensus

Probab=90.08  E-value=0.69  Score=44.79  Aligned_cols=75  Identities=13%  Similarity=0.116  Sum_probs=54.8

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCc-EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...+..+..+++.|...+.+.+. +.|++++.....+.+- ...  +.+......+.|..+...+.+.|.|.|.|..|.
T Consensus       343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~--~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~  418 (1205)
T KOG0613|consen  343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGA-LPC--PVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGT  418 (1205)
T ss_pred             eeccccCcceeecccccCCcCCchheeecccccccccccc-ccc--ccccccCcchhhhhcCcccccccccceeccCCc
Confidence            44566688899999999998775 9999977654432211 111  222234677889999999999999999999986

>PHA03052 Hypothetical protein; Provisional

Probab=89.81  E-value=1.1  Score=27.08  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=27.5

Q ss_pred             eeceEEecCCcEEEEEEec-----cCceEEEEEcCccceee
Q psy15235         28 FGDTEIMEGAPINISCILT-----IFEQVKWQLNGRNINQS   63 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~-----~~~~v~W~~~g~~~~~~   63 (323)
                      |..+.+..|..++|.|.+.     ..+.+.|.-|+..+...
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~   44 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED   44 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence            4567788999999999932     24689999988777443

>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines

Probab=87.19  E-value=2.3  Score=25.52  Aligned_cols=61  Identities=15%  Similarity=0.314  Sum_probs=38.0

Q ss_pred             EEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe
Q psy15235        126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM  205 (323)
Q Consensus       126 ~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~  205 (323)
                      +|+|.....-     -+.||-+|..+..         ....++++..+    .++|+|+- ...     ...++-++-..
T Consensus         2 tltC~s~~sL-----PiswYcN~TRLlR---------lt~~Tlt~~~l----tcNFtCV~-qSG-----h~hSiWItW~~   57 (71)
T PF11049_consen    2 TLTCPSNASL-----PISWYCNGTRLLR---------LTQQTLTVVTL----TCNFTCVG-QSG-----HRHSIWITWYA   57 (71)
T ss_pred             ceecCCCCCC-----cccEEECCceeee---------ecCCeEeeeee----eEEeeecC-CCC-----CCceEEEEEcC
Confidence            5778665544     5799999876654         34456666554    57899976 222     34556666655


Q ss_pred             cceee
Q psy15235        206 KPTAK  210 (323)
Q Consensus       206 ~p~~~  210 (323)
                      .|+++
T Consensus        58 qPVLQ   62 (71)
T PF11049_consen   58 QPVLQ   62 (71)
T ss_pred             chhhh
Confidence            66554

This domain would appear to be the cytoplasmic region of the protein [].

>TIGR00864 PCC polycystin cation channel protein

Probab=86.24  E-value=57  Score=35.79  Aligned_cols=197  Identities=9%  Similarity=0.057  Sum_probs=99.1

Q ss_pred             ceEEecCCcEEEEEEecc--CceEEEEEcCcc-ceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCcc
Q psy15235         30 DTEIMEGAPINISCILTI--FEQVKWQLNGRN-INQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRMN  104 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~~~--~~~v~W~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~~  104 (323)
                      ...+..|+.++|.+...+  ...+.|..++.. ....  ........-...+.+.+.+..-..  .+.|.+.+.-     
T Consensus      1876 ~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t--~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~V----- 1948 (2740)
T TIGR00864      1876 KKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ--PGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEV----- 1948 (2740)
T ss_pred             cccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec--CCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEE-----
Confidence            345678999999998443  467888885432 2211  011111111113333333322222  3333333310     


Q ss_pred             ceee--eeeeCCc-eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeE
Q psy15235        105 AITG--NYDIEPK-YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       105 ~~~~--~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y  181 (323)
                       +.+  .+.+... ...+..|+..++.-.+....   ...+.|+.+-..+..    +..+......++..   ....|.|
T Consensus      1949 -le~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~---~V~f~W~f~~~~~~g----~~~~~~~G~~vty~---~~~~G~~ 2017 (2740)
T TIGR00864      1949 -LEAVRGLQIPDCCAAGIATGEEKNFTANVQRGK---PVAFAWTFDLHHLHG----DSLVIHMGKDVSYT---AEAAGLL 2017 (2740)
T ss_pred             -EEeccceEecCCcccceecCceEEEEEEEecCC---ceEEEEEeeecccCC----CcceeecCCceEEc---cCCCcEE
Confidence             111  1111111 11256788999998887766   578999865333322    11111111222222   2467888


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEEecceee-ee-ceeEEeeCCeEEEEEEEecCC-CCcEEEEECCee
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVIMKPTAK-LV-ETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDT  245 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~-~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~  245 (323)
                      ...+ ...+.......+..+.|+.+.... +. .......+..+.|.|.....+ ...+.|-+++..
T Consensus      2018 ~I~v-~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt 2083 (2740)
T TIGR00864      2018 EIQL-GAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGS 2083 (2740)
T ss_pred             EEEE-EEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCC
Confidence            8766 333223334556666666644222 11 123355688999999996544 357999886544

Note: this model has been restricted to the amino half because for technical reasons.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=85.82  E-value=7.1  Score=24.98  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=25.6

Q ss_pred             CceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        139 DYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       139 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .+.+.|+..+.....          .............|+|.+.|.|+
T Consensus        26 ~~~~~l~~~~~k~~~----------~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   26 KPSLFLENPGKKSLE----------TKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             CEEEEEECSSCEEEE----------ESSEEEEESBTCGGSEEEEEEEE
T ss_pred             ChhheeeccCccccc----------cceEEEEecCCCCCCEEEEEEEc
Confidence            457777776655543          23345555666789999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03052 Hypothetical protein; Provisional

Probab=84.30  E-value=7.2  Score=23.75  Aligned_cols=39  Identities=23%  Similarity=0.427  Sum_probs=29.9

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE  153 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~  153 (323)
                      ....+..|..++|.|.+.-.++.....+.|..++..+..
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~   43 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE   43 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence            445677899999999997666554668889888877744

>PHA03189 UL14 tegument protein; Provisional

Probab=83.83  E-value=11  Score=30.70  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=18.0

Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      +..+|++. +..+-+|.|.|+..|..
T Consensus       132 q~ltLtF~-v~t~taG~Y~CvLrN~t  156 (348)
T PHA03189        132 QRLTLTFR-VSTSTAGMYECVLRNET  156 (348)
T ss_pred             eEEEEEEE-EEecccceEEEEecccc
Confidence            34555554 55567899999999975

>TIGR00864 PCC polycystin cation channel protein

Probab=83.79  E-value=74  Score=35.03  Aligned_cols=108  Identities=16%  Similarity=0.219  Sum_probs=67.7

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ  198 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  198 (323)
                      +..|.++.+.-.+....   ...+.|..++..-..         .....     .+..++|.|+..+ ...+.......+
T Consensus      1797 ~~ag~~v~F~a~vstGs---nVsw~W~f~~g~s~~---------gk~v~-----~Tf~~aG~ytV~L-~AsN~vs~~~~s 1858 (2740)
T TIGR00864      1797 FAADSSVCFQGELATGT---NVSWCWAIDGGSSKM---------GKHAC-----MTFPDAGTFAIRL-NASNAVSGKSAS 1858 (2740)
T ss_pred             eecCcEEEEEEEccCCC---eeEEEEEeCCCCccc---------cceeE-----EecCCCeEEEEEE-EEEcccCcceee
Confidence            34466677766654444   467888776543221         11111     3346789998777 333335566778


Q ss_pred             eeeEEEecc-eee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCe
Q psy15235        199 ADFDVIMKP-TAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND  244 (323)
Q Consensus       199 ~~l~v~~~p-~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~  244 (323)
                      ..+.|+.+. .+. ......+..|+.++|.+.+...+...+.|...+.
T Consensus      1859 ~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdg 1906 (2740)
T TIGR00864      1859 REFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGA 1906 (2740)
T ss_pred             eeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCC
Confidence            888888765 222 2223456789999999999666678899988654

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03189 UL14 tegument protein; Provisional

Probab=83.73  E-value=6.4  Score=31.97  Aligned_cols=29  Identities=3%  Similarity=-0.152  Sum_probs=20.8

Q ss_pred             CCeEEEEEeeccc-CcceEEEeeccCCccc
Q psy15235         77 EDNFKYSIHEAIL-ESGYVQSSLFIPRMNA  105 (323)
Q Consensus        77 ~~~~~l~i~~~~~-~G~Y~C~~~~~~~~~~  105 (323)
                      ...++|++.-.+. +|.|.|...|......
T Consensus       131 aq~ltLtF~v~t~taG~Y~CvLrN~tHglv  160 (348)
T PHA03189        131 AQRLTLTFRVSTSTAGMYECVLRNETHGLV  160 (348)
T ss_pred             eeEEEEEEEEEecccceEEEEeccccceee
Confidence            4455677766666 9999999987765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	323
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		7e-09
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		1e-08
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-08
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-07
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		2e-07
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-06
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-06
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		7e-06
3s97_C	201	Ptprz Cntn1 Complex Length = 201		2e-05
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-05
1epf_A	191	Crystal Structure Of The Two N-Terminal Immunoglobu		2e-05
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		3e-05
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		5e-05
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-04
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		2e-04
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		2e-04
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-04
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-04
2wv3_A	190	Neuroplastin-55 Binds To And Signals Through The Fi		3e-04
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		3e-04
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		3e-04
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-04
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		5e-04
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		6e-04
2r15_A	212	Crystal Structure Of The Myomesin Domains 12 And 13		7e-04
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		8e-04
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		9e-04

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           T KC+VT   P    +I W K N+ I         L ++  ++T+ K T  DAGQY+C  
Sbjct: 24  TFKCHVTGTAP---IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
            +    ++   AQ       +   KL  +  V + E  R EC + GSP   V W   ++T
Sbjct: 81  SNVAGKDSCS-AQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLW-YKDET 138
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
             +   + ++S       + +VL++   ++ D G+Y C  +N
Sbjct: 139 EIQESSKFRMS----FVESVAVLEMYNLSVEDSGDYTCEAHN 176

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
           P   +C +    P    Q+ WYK  + + +   L      +  ++ I +T     GQY+C
Sbjct: 118 PVAFECRINGSEP---LQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174
Query: 184 RLIDPKST--NTTPLAQADFDVI----MKPTAKLVETLTVIEGEKLRLECLVVGSPPPTV 237
              +P  T  ++  L  ++ +V     +KP      ++ +  GE    +C V G+ P  +
Sbjct: 175 SASNPLGTASSSAKLTLSEHEVPPFFDLKPV-----SVDLALGESGTFKCHVTGTAPIKI 229
Query: 238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
            W   N    R  G  K++      T    L + + T  D G Y C+ +NVA ++S
Sbjct: 230 TWAKDNRE-IRPGGNYKMTLVENTAT----LTVLKVTKGDAGQYTCYASNVAGKDS 280

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           T KC+VT   P    +I W K N+ I         L ++  ++T+ K T  DAGQY+C  
Sbjct: 24  TFKCHVTGTAP---IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80
Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
            +    ++   AQ       +   KL  +  V + E  R EC + GSP   V W   ++T
Sbjct: 81  SNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLW-YKDET 138
Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
             +   + ++S       + +VL++   ++ D G+Y C  +N
Sbjct: 139 EIQESSKFRMS----FVESVAVLEMYNLSVEDSGDYTCEAHN 176

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 125 FTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
            T  C  + SP P     I W++  K I E  +    L  S   +T+R     D G Y C
Sbjct: 22  MTFSCRASGSPEPA----ISWFRNGKLIEENEKYI--LKGSNTELTVRNIINSDGGPYVC 75
Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
           R  +    +     QA   V ++P    ++  T  E  ++ L C   G P P + W+   
Sbjct: 76  RATNKAGEDEK---QAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAV 132
Query: 244 DTYFRSQGRIKLSEHPE-KGT-ANSVLQIDEATMADRGNYYCH 284
           D +  ++G   L    E KG   +S L I +  ++D G Y C 
Sbjct: 133 DGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 175

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 127 LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI 186
           L CN  +  PG  Y+  W          T+    ++Q+  ++ I +T   D G YSC   
Sbjct: 120 LPCNPPAHYPGLSYR--WLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLAT 177
Query: 187 DPKSTNT----TPLAQADFDV----IMKPTAKL---VETLTVIEGEKLRLECLVVGSPPP 235
                +T    +  AQ +       +  P+ K     ET  ++ G+++ LEC   G+P P
Sbjct: 178 SHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALV-GQQVTLECFAFGNPVP 236
Query: 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
            ++WR           ++  S  P+  TA   LQI   +  D G Y C   N   R++
Sbjct: 237 RIKWR-----------KVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDT 283

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 28/155 (18%)
Query: 161 LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT-----TPLAQADFDVIM-----KPTAK 210
           ++Q   ++ I K    D G Y+C + +  + +      TPL   + D +M     K   +
Sbjct: 151 VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRN-DGVMGEYEPKIEVQ 209
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
             ET+   +G  ++LEC  +G+P PT+ WR       R+ G+  ++    +  +N +L+I
Sbjct: 210 FPETVPAEKGTTVKLECFALGNPVPTILWR-------RADGK-PIARKARRHKSNGILEI 261
Query: 271 DEATMADRGNYYC-----HGNNVA----TRNSQPN 296
                 D G+Y C      G NVA    T  +QPN
Sbjct: 262 PNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN 296

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 28/155 (18%)
Query: 161 LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT-----TPLAQADFDVIM-----KPTAK 210
           ++Q   ++ I K    D G Y+C + +  + +      TPL   + D +M     K   +
Sbjct: 152 VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRN-DGVMGEYEPKIEVQ 210
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
             ET+   +G  ++LEC  +G+P PT+ WR       R+ G+  ++    +  +N +L+I
Sbjct: 211 FPETVPAEKGTTVKLECFALGNPVPTILWR-------RADGK-PIARKARRHKSNGILEI 262
Query: 271 DEATMADRGNYYC-----HGNNVA----TRNSQPN 296
                 D G+Y C      G NVA    T  +QPN
Sbjct: 263 PNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN 297

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 69/171 (40%), Gaps = 29/171 (16%)
Query: 126 TLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
            L+C V+  PPP       W +G + I   ++    L  S  ++ I   T DD+G Y+C 
Sbjct: 240 VLECCVSGYPPP----SFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTC- 292
Query: 185 LIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
           ++  K+ N +  A A+  V++ P        L   E   +  EC V G P PTV W    
Sbjct: 293 VVTYKNENIS--ASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG 350
Query: 244 DT-----YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
           D      YF+  G              S L+I     +D G Y C   N A
Sbjct: 351 DVVIPSDYFQIVG-------------GSNLRILGVVKSDEGFYQCVAENEA 388

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 19/174 (10%)
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT--- 194
           DD    W      +    +    ++Q+  ++ I      D G YSC +  P  T +    
Sbjct: 38  DDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSK 97
Query: 195 --PLAQADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
             PL            A +V   + +  + G+ + LEC  +G+P P + WR         
Sbjct: 98  FIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR--------- 148
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
           +    +    E  T+ +VL+I    + D G Y C   N+  R    ++A +YV+
Sbjct: 149 KVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENI--RGKDKHQARIYVQ 200

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-S 167
           N D+ P+ KV E     T+ C  +  P   D +I W+K    + + +  +GR+ Q +  +
Sbjct: 110 NIDMGPQLKVVERTRTATMLCAASGNP---DPEITWFKDFLPV-DPSASNGRIKQLRSGA 165
Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT----VIEGEKL 223
           + I  +   D G+Y C  +   S      + A+  V ++  A     L     ++ G  +
Sbjct: 166 LQIESSEETDQGKYEC--VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNV 223
Query: 224 RLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
            + C+ VGSP P V+W          QG   L+   +     +VL++ +  + D  NY C
Sbjct: 224 NITCVAVGSPMPYVKWM---------QGAEDLTPEDDMPVGRNVLELTD--VKDSANYTC 272

>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 14/156 (8%)
Query: 139 DYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAGQYSCRLIDPKSTNTTP 195
           D  I W+  N       +    +  + D   ++TI    +DDAG Y C +     T +  
Sbjct: 32  DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA 91
Query: 196 LAQAD-FDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR-IGNDTYFRSQGRI 253
                 F  +M   A   +     EGE   + C VV S PPT+ W+  G D   +   R 
Sbjct: 92  TVNVKIFQKLMFKNAPTPQEFK--EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF 149
Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
            +        +N+ LQI      D G Y C G  +A
Sbjct: 150 IV-------LSNNYLQIRGIKKTDEGTYRCEGRILA 178

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 14/156 (8%)
Query: 139 DYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAGQYSCRLIDPKSTNTTP 195
           D  I W+  N       +    +  + D   ++TI    +DDAG Y C +     T +  
Sbjct: 32  DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA 91
Query: 196 LAQAD-FDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR-IGNDTYFRSQGRI 253
                 F  +M   A   +     EGE   + C VV S PPT+ W+  G D   +   R 
Sbjct: 92  TVNVKIFQKLMFKNAPTPQEFK--EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF 149
Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
            +        +N+ LQI      D G Y C G  +A
Sbjct: 150 IV-------LSNNYLQIRGIKKTDEGTYRCEGRILA 178

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 161 LTQSKDSITIRKTTVDDAGQYSC----------RLIDPKSTNTTPLAQADFDVIMKPTAK 210
           ++Q+  ++ I KT   D G YSC          + +  K +  +  A+          AK
Sbjct: 153 VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
                  + G+ + LEC   G+P P ++WR  +     SQ    LS  P       +L I
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDG----SQTSKWLSSEP-------LLHI 261
Query: 271 DEATMADRGNYYCHGNNVATRNS 293
                 D G Y C   N+  R++
Sbjct: 262 QNVDFEDEGTYECEAENIKGRDT 284

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 25/149 (16%)
Query: 144 WYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYSCRL---IDPKSTNTTPLAQ 198
           WYK  +  T  +A  L+ R+ Q   ++ I+   V+D+G+Y C +   +  +S  T     
Sbjct: 252 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 311
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
           A     + P      T TV  G      C   G+P  TV W               + + 
Sbjct: 312 APLSAKIDPP-----TQTVDFGRPAVFTCQYTGNPIKTVSW---------------MKDG 351
Query: 259 PEKGTANSVLQIDEATMADRGNYYCHGNN 287
              G + SVL+I+     D+G Y C   N
Sbjct: 352 KAIGHSESVLRIESVKKEDKGMYQCFVRN 380

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 22/161 (13%)
Query: 132 TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191
           T  P   D   +W+  N+S+  +  L  +L+    ++T+   T +D   Y C   +P S 
Sbjct: 132 TCEPETQDATYLWWVNNQSLPVSPRL--QLSNGNRTLTLFNVTRNDTASYKCETQNPVSA 189
Query: 192 NTTPLAQADFDVIMKPTAKLVETLTVI--EGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
             +       +V+  P A  +  L      GE L L C    +PP    W + N T+ +S
Sbjct: 190 RRS--DSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQQS 246
Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT 290
                             L I   T+ + G+Y C  +N  T
Sbjct: 247 TQE---------------LFIPNITVNNSGSYTCQAHNSDT 272

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 25/149 (16%)
Query: 144 WYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYSCRL---IDPKSTNTTPLAQ 198
           WYK  +  T  +A  L+ R+ Q   ++ I+   V+D+G+Y C +   +  +S  T     
Sbjct: 249 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 308
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
           A     + P      T TV  G      C   G+P  TV W               + + 
Sbjct: 309 APLSAKIDPP-----TQTVDFGRPAVFTCQYTGNPIKTVSW---------------MKDG 348
Query: 259 PEKGTANSVLQIDEATMADRGNYYCHGNN 287
              G + SVL+I+     D+G Y C   N
Sbjct: 349 KAIGHSESVLRIESVKKEDKGMYQCFVRN 377

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 29/169 (17%)
Query: 144 WYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYSCRL---IDPKSTNTTPLAQ 198
           WYK  +  T  +A  L+ R+ Q   ++ I+   V+D+G+Y C +   +  +S  T     
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
           A     + P      T TV  G      C   G+P  TV W               + + 
Sbjct: 342 APLSAKIDPP-----TQTVDFGRPAVFTCQYTGNPIKTVSW---------------MKDG 381
Query: 259 PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
              G + SVL+I+     D+G Y C   N    + +  EA   +++ G+
Sbjct: 382 KAIGHSESVLRIESVKKEDKGMYQCFVRN----DRESAEASAELKLGGR 426

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 25/149 (16%)
Query: 144 WYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYSCRL---IDPKSTNTTPLAQ 198
           WYK  +  T  +A  L+ R+ Q   ++ I+   V+D+G+Y C +   +  +S  T     
Sbjct: 246 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH 258
           A     + P      T TV  G      C   G+P  TV W               + + 
Sbjct: 306 APLSAKIDPP-----TQTVDFGRPAVFTCQYTGNPIKTVSW---------------MKDG 345
Query: 259 PEKGTANSVLQIDEATMADRGNYYCHGNN 287
              G + SVL+I+     D+G Y C   N
Sbjct: 346 KAIGHSESVLRIESVKKEDKGMYQCFVRN 374

>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The Fibroblast Growth Factor Receptor Length = 190

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 26/174 (14%)
Query: 123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
           +P TL+CN+TS      Y   W K    +T     + R   S     I K   +D+G+Y 
Sbjct: 19  LPVTLQCNLTSSSHTLMYSY-WTKNGVELT-----ATRKNASNMEYRINKPRAEDSGEYH 72
Query: 183 C--RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR 240
           C    +     N T   +A  D+     ++        EG+   + C  VG P P   WR
Sbjct: 73  CVYHFVSAPKANATIEVKAAPDITGHKRSE-----NKNEGQDAMMYCKSVGYPHPEWMWR 127
Query: 241 IGNDTYFR----SQGR---IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
              +  F     S GR   I    + E    N  LQI E    D G Y C+  N
Sbjct: 128 KKENGVFEEISNSSGRFFIINKENYTELNIVN--LQITE----DPGEYECNATN 175

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Query: 141 QIVWYKGNKSITEATELSG---RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
           ++ W++  + I+ +T L G     +  +  +TI   T  ++G+YS      K+TN +  A
Sbjct: 36  EVSWFRDGQVISTST-LPGVQISFSDGRAKLTIPAVTKANSGRYSL-----KATNGSGQA 89
Query: 198 QADFDVIMKPT------AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG 251
            +  ++++K         + ++++TV +G ++RL+  V G P P V+       ++R   
Sbjct: 90  TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK-------FYRDGA 142
Query: 252 RIKLS---EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV 300
            I+ S   +  ++G   S+L I EA   D G Y  +  N   R +   E  V
Sbjct: 143 EIQSSLDFQISQEGDLYSLL-IAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Query: 141 QIVWYKGNKSITEATELSG---RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
           ++ W++  + I+ +T L G     +  +  +TI   T  ++G+YS      K+TN +  A
Sbjct: 36  EVSWFRDGQVISTST-LPGVQISFSDGRAKLTIPAVTKANSGRYSL-----KATNGSGQA 89
Query: 198 QADFDVIMKPT------AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG 251
            +  ++++K         + ++++TV +G ++RL+  V G P P V+       ++R   
Sbjct: 90  TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK-------FYRDGA 142
Query: 252 RIKLS---EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV 300
            I+ S   +  ++G   S+L I EA   D G Y  +  N   R +   E  V
Sbjct: 143 EIQSSLDFQISQEGDLYSLL-IAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 34/189 (17%)
Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQ----YSC----RL 185
           PPP     IVW K  K ++  T+    + +    I+I +     AG+    Y C     +
Sbjct: 34  PPP----SIVWRKNGKKVS-GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGV 88
Query: 186 IDPKSTNTT------PLAQADFDVIMK-PTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
            D  S + T          A F VI + P  +++E      G  + + C  +G+P P + 
Sbjct: 89  GDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV-----GHTVLMTCKAIGNPTPNIY 143
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG-NNVATRNSQPNE 297
           W        ++Q ++ +S +P     +  LQI+ +   D+G Y C   N++ T +S+   
Sbjct: 144 W-------IKNQTKVDMS-NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATN 195
Query: 298 AFVYVRVKG 306
            +V VR  G
Sbjct: 196 LYVKVRRVG 204

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 23/163 (14%)
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL- 196
           +D ++ W     +I  +  +   +T  +  + I + T +D G+Y   L D K+ +   + 
Sbjct: 136 EDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 195
Query: 197 --------AQADFDVIMKPT----------AKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
                   A A+F  + +              L + +T+ EG+ L L C V G PPP V 
Sbjct: 196 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 255
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
           W + N+    S     L     +    +   I+  + AD G Y
Sbjct: 256 W-LKNEKALASDDHCNLKFEAGR---TAYFTINGVSTADSGKY 294

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 64/163 (39%), Gaps = 15/163 (9%)
Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           T  C V S P     +I W + NK + +  +    + ++   +TI      D G Y C  
Sbjct: 26  TFMCAVESYP---QPEISWTR-NKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTA 81
Query: 186 IDPKSTNTTPLAQADFDVIMKP-TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
            +         +     V MKP   +    + +IEG K  L C  +G+P P+V W I  D
Sbjct: 82  NN--GVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW-IKGD 138
Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
           +  R   RI + E       +  L+I      D G Y C   N
Sbjct: 139 SALRENSRIAVLE-------SGSLRIHNVQKEDAGQYRCVAKN 174

>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13 Length = 212

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL- 196
           +D ++ W     +I  +  +   +T  +  + I + T +D G+Y   L D K+ +   + 
Sbjct: 31  EDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 90
Query: 197 --------AQADFDVIMKPT----------AKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
                   A A+F  + +              L + +T+ EG+ L L C V G PPP V 
Sbjct: 91  LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 150
Query: 239 W 239
           W
Sbjct: 151 W 151

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 34/186 (18%)
Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQ----YSC----RL 185
           PPP     IVW K  K ++  T+    + +    I+I +     AG+    Y C     +
Sbjct: 36  PPP----SIVWRKNGKKVS-GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGV 90
Query: 186 IDPKSTNTT------PLAQADFDVIMK-PTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
            D  S + T          A F VI + P  +++E      G  + + C  +G+P P + 
Sbjct: 91  GDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV-----GHTVLMTCKAIGNPTPNIY 145
Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG-NNVATRNSQPNE 297
           W        ++Q ++ +S +P     +  LQI+ +   D+G Y C   N++ T +S+   
Sbjct: 146 W-------IKNQTKVDMS-NPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATN 197
Query: 298 AFVYVR 303
            +V VR
Sbjct: 198 LYVKVR 203

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 46/210 (21%)
Query: 99  FIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS 158
            +PR + IT N    P+ K         L C  T  P     Q  W+K NK I       
Sbjct: 14  LVPRGSKITVN----PESKAVLAGQFVKLCCRATGHP---FVQYQWFKMNKEIPNG---- 62
Query: 159 GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT-- 216
                +   +      V DAG Y CR+ +  +   +  +Q D   I +   + V+ ++  
Sbjct: 63  -----NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSES 117
Query: 217 ------------VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264
                       ++ G  L L+C+ VGSP P  +W       F+       +E P     
Sbjct: 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQW-------FK-------NELPLTHET 163
Query: 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
             +  +    +  +G Y+CH  N   R+SQ
Sbjct: 164 KKLYMVPYVDLEHQGTYWCHVYN--DRDSQ 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-28
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-25
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-11
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-27
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-25
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-13
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-27
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-20
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-26
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-26
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-25
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-21
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-12
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-25
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-11
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-25
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-12
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-25
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-25
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-20
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-24
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-18
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-24
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-20
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-12
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-24
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-22
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-24
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-22
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-22
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-24
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-23
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-23
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-19
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-08
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-24
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-12
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-24
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-06
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-24
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-19
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-24
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-20
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-19
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-08
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-23
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-06
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-23
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-11
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-07
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-23
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-23
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-07
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	8e-23
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	7e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	9e-23
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-19
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-20
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-22
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-22
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-21
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-22
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-22
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	9e-17
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-08
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-22
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-22
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-22
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	9e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-22
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-15
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-22
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-20
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-22
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-20
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-07
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-21
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-10
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-21
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-08
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-21
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-20
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-19
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-21
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-14
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-21
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	9e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-21
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	7e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-21
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-20
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-14
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-20
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-06
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-20
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-16
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-07
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-20
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-20
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-11
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-07
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-20
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-09
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-20
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-20
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-20
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	6e-20
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	3e-05
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-20
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-10
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-20
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-19
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-14
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-19
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-18
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-07
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	8e-19
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-13
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-19
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-11
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-10
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-18
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-18
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-04
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-18
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-18
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-16
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-17
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	6e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-17
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-06
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-17
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-16
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-16
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-16
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-07
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-15
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	7e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-15
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-15
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-12
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	9e-15
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	1e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-13
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-11
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-14
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-14
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	8e-05
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-14
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	5e-14
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-14
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-11
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	8e-14
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-08
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-06
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	2e-13
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	3e-13
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-13
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-06
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	4e-13
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-13
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-07
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-10
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-10
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	7e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	7e-13
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	7e-08
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	9e-13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-08
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-12
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	9e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-12
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	4e-05
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-12
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	7e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-12
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	7e-05
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-12
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-09
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-12
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-06
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-12
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	5e-07
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-12
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-07
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	6e-12
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	7e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	9e-07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	9e-12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-08
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	1e-11
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-08
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-11
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	1e-06
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-06
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-11
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	2e-11
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-11
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-05
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-11
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	5e-08
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	3e-11
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	5e-05
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-11
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	9e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-11
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-11
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-07
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	5e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	7e-11
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	9e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	8e-07
2ens_A	96	Advanced glycosylation END product-specific recept	1e-10
2ens_A	96	Advanced glycosylation END product-specific recept	1e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-10
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-10
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-10
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	9e-10
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-10
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	3e-08
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-06
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-10
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-10
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	4e-10
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-10
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-09
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	5e-10
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-09
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	7e-10
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-08
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	7e-10
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	4e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	9e-10
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-09
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	7e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-09
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-09
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-09
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-09
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	2e-09
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-09
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-09
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-09
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-09
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-08
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-09
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-08
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-09
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	9e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-07
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	3e-08
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-08
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	4e-08
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-08
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	6e-08
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-07
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	8e-08
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	2e-07
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	2e-07
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-07
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	4e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	9e-07
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	4e-07
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	3e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-07
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-07
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-04
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	9e-07
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	1e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-06
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	2e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	4e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	6e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	6e-04
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	7e-06
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	2e-04
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	8e-06
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	8e-05
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	9e-06
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	1e-05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	1e-05
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	1e-05
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-05
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	2e-05
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	3e-05
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	4e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	4e-05
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	5e-05
1xt5_A	135	Variable region-containing chitin-binding protein	8e-05
1smo_A	119	Triggering receptor expressed on myeloid cells 1;	1e-04
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	1e-04
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	3e-04
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	1e-04
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	2e-04
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	2e-04
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	3e-04
1q8m_A	127	Triggering receptor expressed on myeloid cells 1;	3e-04
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	8e-04
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	9e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  114 bits (288), Expect = 1e-28
 Identities = 65/290 (22%), Positives = 108/290 (37%), Gaps = 29/290 (10%)

Query: 30  DTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSSVDSGFA--ATANLT------EDN 79
           D     G P+   C +   E  QV W  +G  +   +          A L          
Sbjct: 110 DVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHV 169

Query: 80  FKYSIHEAILESGYVQSSLFIP-RMNAITGNYDIEPKYKVFEYRVPFTLKCNVT-SPPPG 137
            +Y+   A    G   SS  +    + +   +D++P           T KC+VT + P  
Sbjct: 170 GQYNCS-ASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI- 227

Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
              +I W K N+ I         L ++  ++T+ K T  DAGQY+C   +    ++    
Sbjct: 228 ---KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS---C 281

Query: 198 QADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKL 255
            A   V   P    KL  +  V + E  R EC + GSP   V W   ++T  +   + ++
Sbjct: 282 SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRM 340

Query: 256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           S           L++   ++ D G+Y C  +N A   S      + V+  
Sbjct: 341 SFVESVAV----LEMYNLSVEDSGDYTCEAHNAAGSASS--STSLKVKEP 384

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  104 bits (262), Expect = 3e-25
 Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 19/188 (10%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
           P TL+C V  +P      +I WYK +  +  A     +   +  S+ I K    D G+Y+
Sbjct: 22  PITLQCKVDGTPEI----RIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTA----KLVETLTVIEGEKLRLECLVVGSPPPTVE 238
           C+  +      +    A   +  +       + ++ +    G  +  EC + GS P  V 
Sbjct: 78  CKAENSVGAVAS---SAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVS 134

Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298
           W   +    +    ++ S      T    LQI +   +  G Y C  +N     S    A
Sbjct: 135 WYK-DGELLKDDANLQTSFIHNVAT----LQILQTDQSHVGQYNCSASNPLGTASSS--A 187

Query: 299 FVYVRVKG 306
            + +    
Sbjct: 188 KLTLSEHE 195

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 96.4 bits (240), Expect = 2e-22
 Identities = 54/282 (19%), Positives = 94/282 (33%), Gaps = 48/282 (17%)

Query: 31  TEIMEGAPINISCILTIFEQ--VKWQLNGRNINQSSVDSGFAATANLT--------EDNF 80
             + +       C +    +  V W  +   I +SS        +           ED+ 
Sbjct: 301 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360

Query: 81  KYSIHEAILESGYVQSSLFI-----PRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT-SP 134
            Y+  EA   +G   SS  +     P         +      V        L+C +  +P
Sbjct: 361 DYTC-EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADV-------HLECELQGTP 412

Query: 135 PPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQYSCRLIDPKS 190
           P     Q+ W+K  + +        +     +    SI I      D G+Y C+     +
Sbjct: 413 PF----QVSWHKDKRELRS----GKKYKIMSENFLTSIHILNVDSADIGEYQCK-----A 459

Query: 191 TNTTPLAQADFDVIMKPTAKLVETL---TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247
           +N          + +K   + V+ L   + + GE+++L+  + G+ P +V W        
Sbjct: 460 SNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIV 519

Query: 248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
           R    I +S      T    LQ   A  A+ G Y C   N A
Sbjct: 520 RESDNIWISYSENIAT----LQFSRAEPANAGKYTCQIKNEA 557

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 62.1 bits (151), Expect = 7e-11
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E +    GE + L+C V G+P   + W     T  RS    K+       +    L I++
Sbjct: 13  EHVEAAIGEPITLQCKVDGTPEIRIAWYK-EHTKLRSAPAYKMQFKNNVAS----LVINK 67

Query: 273 ATMADRGNYYCHGNNVA 289
              +D G Y C   N  
Sbjct: 68  VDHSDVGEYTCKAENSV 84

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  107 bits (268), Expect = 3e-27
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
             T KC+VT + P     +I W K N+ I         L ++  ++T+ K T  DAGQY+
Sbjct: 22  SGTFKCHVTGTAPI----KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 77

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR 240
           C   +    ++     A   V   P    KL  +  V + E  R EC + GSP   V W 
Sbjct: 78  CYASNVAGKDS---CSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWY 134

Query: 241 IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
             ++T  +   + ++S           L++   ++ D G+Y C  +N A
Sbjct: 135 K-DETEIQESSKFRMSFVESVAV----LEMYNLSVEDSGDYTCEAHNAA 178

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  102 bits (255), Expect = 2e-25
 Identities = 58/296 (19%), Positives = 104/296 (35%), Gaps = 44/296 (14%)

Query: 30  DTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSSVD--SGFAATANLT------EDN 79
             ++  G      C +T     ++ W  + R I        +    TA LT       D 
Sbjct: 14  SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 73

Query: 80  FKYSIHEAILESGYVQSSLFI-----PRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT-S 133
            +Y+   A   +G    S  +     PR         +EP   V +       +C +  S
Sbjct: 74  GQYTC-YASNVAGKDSCSAQLGVQEPPRFIK-----KLEPSRIVKQDE-HTRYECKIGGS 126

Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193
           P      +++WYK    I E+++      +S   + +   +V+D+G Y+C      + N 
Sbjct: 127 PEI----KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE-----AHNA 177

Query: 194 --TPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ 250
             +  +     V   P   K    +  ++G  + LEC + G+PP  V W   +    RS 
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK-DKRELRSG 236

Query: 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
            + K+       +    + I     AD G Y C  +N     +        + +K 
Sbjct: 237 KKYKIMSENFLTS----IHILNVDSADIGEYQCKASNDVGSYT----CVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
            ++ +  GE    +C V G+ P  + W   ++   R  G  K++      T    L + +
Sbjct: 13  VSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTAT----LTVLK 67

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
            T  D G Y C+ +NVA ++S    A + V+  
Sbjct: 68  VTKGDAGQYTCYASNVAGKDSC--SAQLGVQEP 98

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  106 bits (266), Expect = 5e-27
 Identities = 49/200 (24%), Positives = 67/200 (33%), Gaps = 16/200 (8%)

Query: 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---S 167
           DI P              C V       D  I W+  N       +    +  + D   +
Sbjct: 6   DIVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63

Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLE 226
           +TI    +DDAG Y C +     T +   A  +  +  K   K         EGE   + 
Sbjct: 64  LTIYNANIDDAGIYKCVVTAEDGTQSE--ATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121

Query: 227 CLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
           C VV S PPT+ W   G D   +   R  +         N+ LQI      D G Y C G
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS-------NNYLQIRGIKKTDEGTYRCEG 174

Query: 286 NNVATRNSQPNEAFVYVRVK 305
             +A       +  V V V 
Sbjct: 175 RILARGEINFKDIQVIVNVP 194

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 86.9 bits (215), Expect = 7e-20
 Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 15/184 (8%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
            + C+V  S PP     I+W    + +    ++   +  + + + IR     D G Y C 
Sbjct: 119 VIVCDVVSSLPP----TIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCE 173

Query: 185 LIDPKSTNTTPLAQADFDVIMKPTAKLVETL---TVIEGEKLRLECLVVGSPPPTVEWRI 241
                +            V + PT +  +++   T   G+ + L C   G P PT+ W  
Sbjct: 174 GRIL-ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSW-T 231

Query: 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301
            +     ++              +S L I      D   Y C   N A    Q     + 
Sbjct: 232 KDGEPIENEEEDDEKHI--FSDDSSELTIRNVDKNDEAEYVCIAENKA--GEQDASIHLK 287

Query: 302 VRVK 305
           V  K
Sbjct: 288 VFAK 291

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  102 bits (256), Expect = 1e-26
 Identities = 47/199 (23%), Positives = 63/199 (31%), Gaps = 22/199 (11%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---SI 168
           I P              C V       D  I W+  N       +    +  + D   ++
Sbjct: 7   IVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64

Query: 169 TIRKTTVDDAGQYSCRLIDPKSTN---TTPLAQADFDVIMKPT-AKLVETLTVIEGEKLR 224
           TI    +DDAG Y C       T    T   A  +  +  K             EGE   
Sbjct: 65  TIYNANIDDAGIYKCV-----VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119

Query: 225 LECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
           + C VV S PPT+ W   G D   +   R  +         N+ LQI      D G Y C
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS-------NNYLQIRGIKKTDEGTYRC 172

Query: 284 HGNNVATRNSQPNEAFVYV 302
            G  +A       +  V V
Sbjct: 173 EGRILARGEINFKDIQVIV 191

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  102 bits (256), Expect = 1e-25
 Identities = 46/188 (24%), Positives = 64/188 (34%), Gaps = 22/188 (11%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAG 179
                C     P      I WY        +T+   R+   K+     +TI    ++DAG
Sbjct: 21  SKFFTCTAIGEPE----SIDWYNPQGEKIISTQ---RVVVQKEGVRSRLTIYNANIEDAG 73

Query: 180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVE 238
            Y C+  D K       A    ++  K T + V       +GE   + C V  SP P V 
Sbjct: 74  IYRCQATDAKGQTQE--ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 131

Query: 239 WRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297
           W     +    S  R  +        AN+ LQI     +D G Y C G   A       +
Sbjct: 132 WLYHNEEVTTISDNRFAM-------LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 184

Query: 298 AFVYVRVK 305
             V V V 
Sbjct: 185 IIVIVNVP 192

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 89.5 bits (222), Expect = 8e-21
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 27/190 (14%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
              + C V+ SP P     + W   N+ +T  ++    +  + +++ I      D G Y 
Sbjct: 115 DAEVVCRVSSSPAP----AVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYR 169

Query: 183 CR-------LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP 235
           C         ID +             +  K         T   GE++   C   GSP P
Sbjct: 170 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKS-----FNATAERGEEMTFSCRASGSPEP 224

Query: 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295
            + W   N        +  L        +N+ L +     +D G Y C   N A      
Sbjct: 225 AISWF-RNGKLIEENEKYILKG------SNTELTVRNIINSDGGPYVCRATNKA--GEDE 275

Query: 296 NEAFVYVRVK 305
            +AF+ V V+
Sbjct: 276 KQAFLQVFVQ 285

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 63.7 bits (155), Expect = 8e-12
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
             + +  GE     C  +G P     +    +    S  R+ + +   +      L I  
Sbjct: 12  SKVELSVGESKFFTCTAIGEPESIDWYNPQGEK-IISTQRVVVQKEGVRSR----LTIYN 66

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           A + D G Y C   +   +  +     + +  K
Sbjct: 67  ANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQK 98

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 99.8 bits (249), Expect = 2e-25
 Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 23/175 (13%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAGQ 180
             T + +++  P P    ++ W++  + I+ +T    +++ S     +TI   T  ++G+
Sbjct: 22  TATFEAHISGFPVP----EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGR 77

Query: 181 YSCRLIDPKSTNT--TPLAQADFDVIMKPTA----KLVETLTVIEGEKLRLECLVVGSPP 234
           YS +     +TN      + A+  V  +       + ++++TV +G ++RL+  V G P 
Sbjct: 78  YSLK-----ATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPT 132

Query: 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
           P V++   +    +S    ++S+  +  +    L I EA   D G Y  +  N  
Sbjct: 133 PVVKFYR-DGAEIQSSLDFQISQEGDLYS----LLIAEAYPEDSGTYSVNATNSV 182

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           +++ V+EG     E  + G P P V W   +     +     +      G A   L I  
Sbjct: 13  QSVVVLEGSTATFEAHISGFPVPEVSWFR-DGQVISTSTLPGVQISFSDGRAK--LTIPA 69

Query: 273 ATMADRGNYYCHGNNVA 289
            T A+ G Y     N +
Sbjct: 70  VTKANSGRYSLKATNGS 86

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 99.0 bits (247), Expect = 4e-25
 Identities = 46/187 (24%), Positives = 68/187 (36%), Gaps = 26/187 (13%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
             T  C V   P P    +I W +    I +  +    + ++   +TI      D G Y 
Sbjct: 24  VATFMCAVESYPQP----EISWTRNKILI-KLFDTRYSIRENGQLLTILSVEDSDDGIYC 78

Query: 183 CRLIDPKSTN---TTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
           C      + N       +     V MKP   +    + +IEG K  L C  +G+P P+V 
Sbjct: 79  CT-----ANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVS 133

Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNE 297
           W    D+  R   RI + E       +  L+I      D G Y C   N   T  S+   
Sbjct: 134 WI-KGDSALRENSRIAVLE-------SGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKL-- 183

Query: 298 AFVYVRV 304
             + V V
Sbjct: 184 VKLEVEV 190

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           ET+  +  E     C V   P P + W            R  + E+        +L I  
Sbjct: 15  ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN------GQLLTILS 68

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
              +D G Y C  NN     +  +   + V++K
Sbjct: 69  VEDSDDGIYCCTANNGV-GGAVESCGALQVKMK 100

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  101 bits (254), Expect = 9e-25
 Identities = 57/300 (19%), Positives = 89/300 (29%), Gaps = 50/300 (16%)

Query: 30  DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSGFAATAN--------LTED 78
             +I EG  +  +C           +W LN       +    F +              D
Sbjct: 110 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASD 169

Query: 79  NFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVP----------FTLK 128
              YS   A     ++  S+F           D        + + P           TL+
Sbjct: 170 LGNYSCF-ATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLE 228

Query: 129 CNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID 187
           C    +P P    QI W K + S T     S         + I+    +D G Y C    
Sbjct: 229 CFAFGNPVP----QIKWRKLDGSQTSKWLSSEP------LLHIQNVDFEDEGTYECE--- 275

Query: 188 PKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246
            ++       Q    +  +P    ++       G  LR  C+  G P P V W   +   
Sbjct: 276 AENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQP 334

Query: 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
             SQ RI++S           L+  +  + D G Y C   N          A   + V+ 
Sbjct: 335 LASQNRIEVS--------GGELRFSKLVLEDSGMYQCVAENKHGTVY----ASAELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 88.8 bits (220), Expect = 5e-20
 Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 14/174 (8%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI-RKTTVDDAGQY 181
             TL C    +PP        W      +        R       + I       DAG Y
Sbjct: 24  KVTLTCRARANPPA----TYRWKMNGTELK--MGPDSRYRLVAGDLVISNPVKAKDAGSY 77

Query: 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVEWR 240
            C   + + T  +  A   F  + + +A+  + + + EG  +   C      P  +  W 
Sbjct: 78  QCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL 137

Query: 241 IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
           +     F      +             L I +   +D GNY C   +     ++
Sbjct: 138 LNEFPNFIPADGRRFVSQT-----TGNLYIAKTEASDLGNYSCFATSHIDFITK 186

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 8/72 (11%)

Query: 219 EGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
             EK+ L C    +PP T  W   G +       R +L           ++  +     D
Sbjct: 21  AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-------GDLVISNPVKAKD 73

Query: 278 RGNYYCHGNNVA 289
            G+Y C   N  
Sbjct: 74  AGSYQCVATNAR 85

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =   99 bits (249), Expect = 2e-24
 Identities = 49/297 (16%), Positives = 87/297 (29%), Gaps = 46/297 (15%)

Query: 30  DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSGFAATANLT------EDNF 80
             E+     + + C +   +    + W  + R I+             L       +D  
Sbjct: 15  SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 74

Query: 81  KYSIHEAILESGYVQSSL---------FIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNV 131
            Y +     + G  +S L          +  +         + K +     +        
Sbjct: 75  IYEV-ILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTY 133

Query: 132 TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK-- 189
                    ++ W     +I  +  +   +T  +  + I + T +D G+Y   L D K  
Sbjct: 134 YVEDL----KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG 189

Query: 190 ---------------STNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGS 232
                                L QA      +      L + +T+ EG+ L L C V G 
Sbjct: 190 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGD 249

Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
           PPP V W   N+    S     L     +    +   I+  + AD G Y     N  
Sbjct: 250 PPPEVSWLK-NEKALASDDHCNLKFEAGR---TAYFTINGVSTADSGKYGLVVKNKY 302

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 82.7 bits (204), Expect = 3e-18
 Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 30/223 (13%)

Query: 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITI 170
              ++V        LKC V +     +  IVWYK  + I+       +        ++ I
Sbjct: 13  YLSWEVTG-ECNVLLKCKVANIKK--ETHIVWYKDEREISV----DEKHDFKDGICTLLI 65

Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKL-VETLTVIEGEKLRLEC-- 227
            + +  DAG Y   L D +  +    ++            + V     +    L+++   
Sbjct: 66  TEFSKKDAGIYEVILKDDRGKDK---SRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122

Query: 228 --------LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
                   +        V W   N +  R   R+K     E+      LQI+E T  D+G
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQIW----LQINEPTPNDKG 177

Query: 280 NYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFMD 322
            Y     +  T + +     +  +   +++   +        +
Sbjct: 178 KYVMELFDGKTGHQK--TVDLSGQAYDEAYAEFQRLKQAAIAE 218

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  102 bits (254), Expect = 3e-24
 Identities = 35/273 (12%), Positives = 67/273 (24%), Gaps = 44/273 (16%)

Query: 50  QVKWQLNGRNINQSSVDSGFAATANLT----EDNFKYSIHEAILESGYVQSSLFIPRMNA 105
            V+W L          +S                       A  E G   + LF      
Sbjct: 170 IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRC-CARNELGRECTRLF------ 222

Query: 106 ITGNYDIEPKYKVFEYRV----PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS--- 158
            T + +  P+  + +  +    P  ++C       G  + + W   NK++ E        
Sbjct: 223 -TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHG--FGLTWELENKALEEGNYFEMST 279

Query: 159 ---GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV--- 212
               R         +     +D G Y+C      S +          ++ K         
Sbjct: 280 YSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL------VTIVEKGFINATNSS 333

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E   + + E+          P     W     +              +       +    
Sbjct: 334 EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS---------FPCEQKGLDNGYSISKFC 384

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
                 G Y  H  N   + ++     + +R K
Sbjct: 385 NHKHQPGEYIFHAENDDAQFTK--MFTLNIRRK 415

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 90.1 bits (223), Expect = 3e-20
 Identities = 38/302 (12%), Positives = 75/302 (24%), Gaps = 52/302 (17%)

Query: 30  DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSGFAATANLT-EDNFKYSIH 85
              +  G P+ I C          + W+L  + + + +       + N T        + 
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295

Query: 86  EAILE-SG-Y-------VQSSLFI-----PRMNAITGNYDIEPKYKVFEYRVPFTLKCNV 131
                 +G Y          S  +       +NA   + D E    + +Y   F      
Sbjct: 296 SVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYE----IDQYE-EFCFSVRF 350

Query: 132 T-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS 190
              P      +  W    KS         +   +  SI+         G+Y         
Sbjct: 351 KAYPQI----RCTWTFSRKSFPC----EQKGLDNGYSISKFCNHKHQPGEYIFHA----- 397

Query: 191 TNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR------IGND 244
            N        F + ++      +   + E    +  C   G P P+  W+          
Sbjct: 398 ENDDAQFTKMFTLNIR-----RKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCT 452

Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
                    + +     G   S   ++ +         C   N    +       + +  
Sbjct: 453 EEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSC----ETILLNS 508

Query: 305 KG 306
            G
Sbjct: 509 PG 510

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 77.0 bits (189), Expect = 8e-16
 Identities = 27/182 (14%), Positives = 44/182 (24%), Gaps = 17/182 (9%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             TL+  V +P        +W   + S+           +   S+ I K T   AG+Y  
Sbjct: 65  SITLQVLVDAPGN---ISCLWVFKHSSLNCQPHFD-LQNRGVVSMVILKMTETQAGEYLL 120

Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
            +    +  T         +       L          +  L C+    P P VEW    
Sbjct: 121 FIQSEATNYT---ILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEW---- 173

Query: 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
                        E            + E       +  C   N   R        + + 
Sbjct: 174 --VLCDSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECT-RLFTIDLN 227

Query: 304 VK 305
             
Sbjct: 228 QT 229

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 66.3 bits (161), Expect = 3e-12
 Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 16/138 (11%)

Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV 229
              ++V  +  Y      P+        Q+    + +        + V     + L+ LV
Sbjct: 19  NNDSSVGKSSSYPMVSESPEDLGCALRPQS-SGTVYEAA-----AVEVDVSASITLQVLV 72

Query: 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
                 +  W +   +    Q    L            + I + T    G Y     + A
Sbjct: 73  DAPGNISCLW-VFKHSSLNCQPHFDLQNRG-----VVSMVILKMTETQAGEYLLFIQSEA 126

Query: 290 TRNSQPNEAFVYVRVKGK 307
           T  +        V ++  
Sbjct: 127 TNYT----ILFTVSIRNT 140

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  100 bits (250), Expect = 3e-24
 Identities = 51/297 (17%), Positives = 90/297 (30%), Gaps = 42/297 (14%)

Query: 30  DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSGFAATANL------TEDNF 80
              +  G  + + C            W  N     Q +       T NL        D  
Sbjct: 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVG 170

Query: 81  KYS---IHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV-----PFTLKCNVT 132
            Y+    +           +  I R + + G Y+ + + +  E           L+C   
Sbjct: 171 NYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL 230

Query: 133 -SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191
            +P P     I+W + +           R  +S   + I     +DAG Y C     +++
Sbjct: 231 GNPVP----TILWRRADGKPIAR---KARRHKSNGILEIPNFQQEDAGSYECV---AENS 280

Query: 192 NTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ 250
               +A+       +P    +   + V   E +  EC   G P PT  W   N     ++
Sbjct: 281 RGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK-NGDPLLTR 339

Query: 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
            RI++            L I    ++D G Y C   N          +   + V  +
Sbjct: 340 DRIQIE--------QGTLNITIVNLSDAGMYQCVAENKHGVIF----SSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 94.5 bits (235), Expect = 5e-22
 Identities = 36/188 (19%), Positives = 59/188 (31%), Gaps = 17/188 (9%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI-RKTTVDDAGQY 181
              L C V  +P P     I W      +    +   R +    S+ I       DAG Y
Sbjct: 25  KVKLSCEVKGNPKP----HIRWKLNGTDVDIGMDF--RYSVVDGSLLINNPNKTQDAGTY 78

Query: 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVEWR 240
            C   +   T  +  A+  F  +     +   T++V  G+ + L C     S   +  W 
Sbjct: 79  QCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWI 138

Query: 241 IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV 300
                 ++   R    E          L I +   +D GNY C   N  T +        
Sbjct: 139 FNEYPSYQDNRRFVSQE-------TGNLYIAKVEKSDVGNYTCVVTNTVTNHKV-LGPPT 190

Query: 301 YVRVKGKS 308
            + ++   
Sbjct: 191 PLILRNDG 198

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 11/98 (11%)

Query: 212 VETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
           V      E +K++L C V G+P P + W   G D       R  + +        S+L  
Sbjct: 15  VMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD-------GSLLIN 67

Query: 271 DEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGK 307
           +     D G Y C   N   T  S+  EA +       
Sbjct: 68  NPNKTQDAGTYQCIATNSFGTIVSR--EAKLQFAYLEN 103

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  100 bits (251), Expect = 4e-24
 Identities = 60/300 (20%), Positives = 95/300 (31%), Gaps = 43/300 (14%)

Query: 30  DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVD------------SGFAATAN 74
           D   M G  + ++C          +KW+ +G  +     D                 + +
Sbjct: 30  DAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRH 89

Query: 75  LTEDNFKYSIHEAILESGYVQS---SLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNV 131
              D   Y    ++ +SG + S    + +            + +           LKC V
Sbjct: 90  HKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFL----SQTESITAFMGDTVLLKCEV 145

Query: 132 TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191
              P      I W K  + +      S  +     ++ I +    D+G Y C   +P ST
Sbjct: 146 IGDPM---PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST 202

Query: 192 NTTPLAQADFDVIMKPTAKLV-------ETLTVIEGEKLRLECLVVGSPPPTVEWRIGND 244
            T    +A+  ++  P              +  IEG+   LEC V G PPP+  W     
Sbjct: 203 RTG--NEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWL---- 256

Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
              R +  I+L          S L I   T  D G Y C         S    A + V V
Sbjct: 257 ---RGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISA--SAELTVLV 311

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 96.4 bits (240), Expect = 1e-22
 Identities = 42/201 (20%), Positives = 65/201 (32%), Gaps = 14/201 (6%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK----DS 167
            EP   V        L C+  S        I W K    +    +   +   +      +
Sbjct: 26  SEPSDAVTMRGGNVLLNCSAESDRG--VPVIKWKKDGLILALGMDDRKQQLPNGSLLIQN 83

Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLE 226
           I   +    D G Y C       + +     A   V          E++T   G+ + L+
Sbjct: 84  ILHSRHHKPDEGLYQC-EASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142

Query: 227 CLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
           C V+G P PT+ W+          G  ++   P     +  LQI      D G Y C   
Sbjct: 143 CEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLP-----SGALQISRLQPGDSGVYRCSAR 197

Query: 287 NVATRNSQPNEAFVYVRVKGK 307
           N A+  +  NEA V +     
Sbjct: 198 NPASTRTG-NEAEVRILSDPG 217

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 94.5 bits (235), Expect = 6e-22
 Identities = 56/294 (19%), Positives = 90/294 (30%), Gaps = 41/294 (13%)

Query: 30  DTEIMEGAPINISCILTIF--EQVKWQLNGRNINQSSVDSGFAATANLT--------EDN 79
                 G  + + C +       + WQ N +++N    DS      +           D+
Sbjct: 130 SITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDS 189

Query: 80  FKYSIHEAILESGYVQSS-----LFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT-S 133
             Y    A   +     +     +           +   P   +        L+C V+  
Sbjct: 190 GVYRC-SARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGY 248

Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSCRLIDPKSTN 192
           PPP       W +G + I      S + +     ++ I   T DD+G Y+C        N
Sbjct: 249 PPP----SFTWLRGEEVIQLR---SKKYSLLGGSNLLISNVTDDDSGTYTCV---VTYKN 298

Query: 193 TTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG 251
               A A+  V++ P        L   E   +  EC V G P PTV W   N        
Sbjct: 299 ENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM-KNGDVVIPSD 357

Query: 252 RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
             ++          S L+I     +D G Y C   N A        +   + V 
Sbjct: 358 YFQIVG-------GSNLRILGVVKSDEGFYQCVAENEAGNAQ----SSAQLIVP 400

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  101 bits (254), Expect = 4e-24
 Identities = 52/294 (17%), Positives = 89/294 (30%), Gaps = 62/294 (21%)

Query: 30  DTEIMEGAPINISCILT----IFEQVKWQLNGRNINQSSV---------DSGFAATANLT 76
            T    G  +++SC          Q  W ++G     +           +SG        
Sbjct: 390 YTYYRPGVNLSLSCHAASNPPA--QYSWLIDGNIQQHTQELFISNITEKNSG-------- 439

Query: 77  EDNFKYSIHEAILESGYVQSS--LFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSP 134
                Y+   A   +     +    I     +          K  E +      C   + 
Sbjct: 440 ----LYTCQ-ANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ 494

Query: 135 PPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAGQYSCRLIDPKSTN 192
                   +W+   +S+     +S RL  S    ++T+   T +DA  Y C + +  S N
Sbjct: 495 NT----TYLWWVNGQSLP----VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSAN 546

Query: 193 TTPLAQADFDVIMKPTAKLV--ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ 250
            +       DV+  P   ++     + + G  L L C    +P P   WRI         
Sbjct: 547 RS--DPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRING------- 597

Query: 251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
                           VL I + T  + G Y C  +N+AT  +        + V
Sbjct: 598 ---------IPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNN--SIVKSITV 640

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 99.6 bits (248), Expect = 2e-23
 Identities = 49/291 (16%), Positives = 81/291 (27%), Gaps = 52/291 (17%)

Query: 28  FGDTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSSV---------DSGF---AATA 73
             +T    G  +N+SC        Q  W +NG     +           +SG     A  
Sbjct: 210 PLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHN 269

Query: 74  NLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTS 133
           + T  N        +                    +                 L C    
Sbjct: 270 SDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDED--------------AVALTCEPEI 315

Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193
                    +W+  N+S+  +  L  +L+    ++T+   T +D G Y C + +  S + 
Sbjct: 316 QNT----TYLWWVNNQSLPVSPRL--QLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDH 369

Query: 194 TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI 253
           +     +                   G  L L C    +PP    W I         G I
Sbjct: 370 SDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID--------GNI 421

Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
           +             L I   T  + G Y C  NN A+ +S+       + V
Sbjct: 422 QQH--------TQELFISNITEKNSGLYTCQANNSASGHSR--TTVKTITV 462

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 99.3 bits (247), Expect = 3e-23
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 22/196 (11%)

Query: 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSIT 169
                  K  E +      C   +         +W+  N+S+  +  L  +L+    ++T
Sbjct: 114 SISSNNSKPVEDKDAVAFTCEPETQDA----TYLWWVNNQSLPVSPRL--QLSNGNRTLT 167

Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV 229
           +   T +D   Y C   +P S   +     +               +   GE L L C  
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA 227

Query: 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
             +PP    W +         G  + S           L I   T+ + G+Y C  +N  
Sbjct: 228 ASNPPAQYSWFVN--------GTFQQS--------TQELFIPNITVNNSGSYTCQAHNSD 271

Query: 290 TRNSQPNEAFVYVRVK 305
           T  ++     + V  +
Sbjct: 272 TGLNRTTVTTITVYAE 287

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 93.9 bits (233), Expect = 2e-21
 Identities = 51/277 (18%), Positives = 83/277 (29%), Gaps = 40/277 (14%)

Query: 30  DTEIMEGAPINISC-ILTIFEQVKWQLNGRNINQSSVDSGFAATANLT------EDNFKY 82
              + +   +  +C   T      W +N +++  S           LT       D   Y
Sbjct: 120 SKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179

Query: 83  SIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTS-PPPGDDYQ 141
              E        +S   I  +        I P    +       L C+  S PP     Q
Sbjct: 180 KC-ETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPA----Q 234

Query: 142 IVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR-----LIDPKSTNTTPL 196
             W+          EL            I   TV+++G Y+C+         ++T TT  
Sbjct: 235 YSWFVNGTFQQSTQEL-----------FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283

Query: 197 AQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLS 256
             A+     KP      +  V + + + L C         + W   N+       R++LS
Sbjct: 284 VYAEPP---KPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV--NNQSLPVSPRLQLS 338

Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
                   N  L +   T  D G Y C   N  + + 
Sbjct: 339 ND------NRTLTLLSVTRNDVGPYECGIQNELSVDH 369

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 91.9 bits (228), Expect = 9e-21
 Identities = 55/292 (18%), Positives = 90/292 (30%), Gaps = 39/292 (13%)

Query: 25  ITYFGDTEIMEGAPINISCILTIF-EQVKWQLNGRNINQSSVDSGFAATANLT------E 77
           IT      + +   + ++C   I      W +N +++  S           LT       
Sbjct: 293 ITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRN 352

Query: 78  DNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTS-PPP 136
           D   Y       E     S   I  +     +  I P Y  +   V  +L C+  S PP 
Sbjct: 353 DVGPYEC-GIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPA 411

Query: 137 GDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP--KSTNTT 194
               Q  W              G + Q    + I   T  ++G Y+C+  +     + TT
Sbjct: 412 ----QYSWLID-----------GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTT 456

Query: 195 PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIK 254
                    + KP+     +  V + + +   C         + W   N        R++
Sbjct: 457 VKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSLPVSPRLQ 514

Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHG-NNVATRNSQPNEAFVYVRVK 305
           LS        N  L +   T  D   Y C   N+V+   S P    V + V 
Sbjct: 515 LSN------GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDP----VTLDVL 556

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 86.9 bits (215), Expect = 4e-19
 Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 28/182 (15%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKG---------------NKSITEATELSGRLTQSKD-SIT 169
            L  +         +   WYKG                +  T     SGR     + S+ 
Sbjct: 18  LLLVHNLPQHL---FGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL 74

Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM-KPTAKLVETLTVIEGEKLRLECL 228
           I+    +D G Y+  +I     N     Q      + KP+     +  V + + +   C 
Sbjct: 75  IQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCE 134

Query: 229 VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
                   + W   N+       R++LS        N  L +   T  D  +Y C   N 
Sbjct: 135 PETQDATYLWWV--NNQSLPVSPRLQLSN------GNRTLTLFNVTRNDTASYKCETQNP 186

Query: 289 AT 290
            +
Sbjct: 187 VS 188

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 52.6 bits (126), Expect = 9e-08
 Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 11/101 (10%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGN--DTYFRSQGRIKLSEHPEKGTA------ 264
               V EG+++ L    +        W  G   D   +  G +  ++    G A      
Sbjct: 7   TPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66

Query: 265 ---NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
              N+ L I      D G Y  H       N +    F   
Sbjct: 67  IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVY 107

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 96.5 bits (240), Expect = 5e-24
 Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 22/191 (11%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
              L C+     P D     W      +    +    ++Q+  ++ I      D G YSC
Sbjct: 25  GMVLLCDPPYHFPDD-LSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSC 83

Query: 184 RLIDP-----KSTNTTPLAQADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPPP 235
            +  P       +   PL            A +V   + +  + G+ + LEC  +G+P P
Sbjct: 84  FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP 143

Query: 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295
            + WR        S   I  S         +VL+I    + D G Y C   N+  +    
Sbjct: 144 DIRWRK-VLEPMPSTAEISTS--------GAVLKIFNIQLEDEGIYECEAENIRGK---- 190

Query: 296 NEAFVYVRVKG 306
           ++    + V+ 
Sbjct: 191 DKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 62.6 bits (152), Expect = 7e-12
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
             + V EG+ + L C      P   +  W +     F +  + +          N  L I
Sbjct: 16  PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT-----NGNLYI 70

Query: 271 DEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQFMD 322
                +D+GNY C  ++ +   S  ++    + +  ++      + + QF D
Sbjct: 71  ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKD 122

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 96.5 bits (240), Expect = 5e-24
 Identities = 48/206 (23%), Positives = 72/206 (34%), Gaps = 21/206 (10%)

Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS--- 167
             P   V +   P TL C V   P P     I W+K  + ++   + S R+     +   
Sbjct: 14  EHPTDLVVKKNEPATLNCKVEGKPEP----TIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69

Query: 168 -ITIRKTTVDDAGQYSC----RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEK 222
             T++     D G+Y C    R+    S + +       D          +   V +GE 
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEP----KDTRVAKGET 125

Query: 223 LRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
             LEC    G P PT+ W          +     +    +      L I      D GNY
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185

Query: 282 YCHGNNVA-TRNSQPNEAFVYVRVKG 306
            C   N+  TR S  + A + V+VK 
Sbjct: 186 KCIAQNLVGTRES--SYAKLIVQVKA 209

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 26/175 (14%)

Query: 30  DTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSSVDSGFAATAN------------L 75
           D  + +  P  ++C +       ++W  +G  ++ +   S      +             
Sbjct: 18  DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKK 77

Query: 76  TEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT--S 133
            +D  +Y    A    G   S     ++  +  ++ +EPK           L+C      
Sbjct: 78  EQDGGEYWCV-AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGI 136

Query: 134 PPPGDDYQIVWYKGNKSITEATEL----SGRLTQSKD-SITIRKTTVDDAGQYSC 183
           P P     ++W K    + +   +    S R+      ++ I      D G Y C
Sbjct: 137 PEP----TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 95.9 bits (239), Expect = 6e-24
 Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 26/178 (14%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAG 179
             TL C VT  P P     + WY+  K I     L  R+ + K     + I   T DDA 
Sbjct: 21  NATLVCKVTGHPKP----IVKWYRQGKEIIAD-GLKYRIQEFKGGYHQLIIASVTDDDAT 75

Query: 180 QYSCRLIDPKSTNT--TPLAQADFDVIMKPTA------KLVETLTVIEGEKLRLECLVVG 231
            Y  R     +TN   +    A  +V +          + +  +  + GE + ++    G
Sbjct: 76  VYQVR-----ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG 130

Query: 232 SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
            P P + W+ G D    + G  ++       +  S++  +     D G Y     N  
Sbjct: 131 KPDPVITWQKGQDL-IDNNGHYQVIVT---RSFTSLVFPNGVERKDAGFYVVCAKNRF 184

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 62.8 bits (153), Expect = 5e-12
 Identities = 22/97 (22%), Positives = 27/97 (27%), Gaps = 5/97 (5%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
             L V       L C V G P P V+W            + ++ E          L I  
Sbjct: 12  RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK---GGYHQLIIAS 68

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
            T  D   Y     N     S    A + V V  K  
Sbjct: 69  VTDDDATVYQVRATNQGGSVSG--TASLEVEVPAKIH 103

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  101 bits (252), Expect = 7e-24
 Identities = 56/299 (18%), Positives = 93/299 (31%), Gaps = 48/299 (16%)

Query: 35  EGAPINISCILTI----------FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSI 84
           +   + I C+ +I          + + ++  +G  I+  S   GF   + +         
Sbjct: 142 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS-KKGFTIPSYMISYAGMVFC 200

Query: 85  HEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV------PFTLKCNVTSPPPGD 138
            EA +     QS ++I     +   Y I        + +         L C   +     
Sbjct: 201 -EAKINDESYQSIMYI----VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVG 255

Query: 139 DYQIVWYKGNKSITEATELSGRLTQSKDS--------ITIRKTTVDDAGQYSCRLIDPKS 190
                W   +        ++  L     S        +TI   T  D G Y+C       
Sbjct: 256 -IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 314

Query: 191 TNTTPLAQADFDVIMKPTA----KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246
           T           V  KP       +   +    GE++R+    +G PPP ++W   N   
Sbjct: 315 TKK---NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIP 370

Query: 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
             S   IK         A  VL I E +  D GNY     N  ++  Q +   + V V 
Sbjct: 371 LESNHTIK---------AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVP 420

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 87.9 bits (217), Expect = 3e-19
 Identities = 35/205 (17%), Positives = 55/205 (26%), Gaps = 36/205 (17%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----------------- 166
             +L C            + WYK                  K+                 
Sbjct: 566 SVSLWCTADRSTF---ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTN 622

Query: 167 ---SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL---TVIEG 220
               + ++  ++ D G Y C   D K+            V+ +    +   L   T   G
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRH-CVVRQLTVLERVAPTITGNLENQTTSIG 681

Query: 221 EKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGN 280
           E + + C   G+PPP + W       F+    +           N  L I      D G 
Sbjct: 682 ESIEVSCTASGNPPPQIMW-------FKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGL 734

Query: 281 YYCHGNNVATRNSQPNEAFVYVRVK 305
           Y C   +V        EAF  +   
Sbjct: 735 YTCQACSVLGCAKV--EAFFIIEGA 757

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 79.4 bits (195), Expect = 2e-16
 Identities = 24/200 (12%), Positives = 55/200 (27%), Gaps = 19/200 (9%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI-TIRKTTVDDAGQYS 182
           P          P  +   +  ++G   I         +     ++ T+     + +  Y 
Sbjct: 470 PSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYK 529

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIG 242
           C  ++             F V   P   L   +   E E + L C    S    + W   
Sbjct: 530 CEAVNKVGRGE---RVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKL 586

Query: 243 NDT---------------YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
                                +  ++  +          ++++  A++ D+G+Y C   +
Sbjct: 587 GPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQD 646

Query: 288 VATRNSQPNEAFVYVRVKGK 307
             T+        + V  +  
Sbjct: 647 RKTKKRHCVVRQLTVLERVA 666

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 78.3 bits (192), Expect = 4e-16
 Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 19/186 (10%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI-TIRKTTVDDAGQYS 182
              + C             +W        +  E++           TI K   +D G Y 
Sbjct: 48  TLQITCRGQRDL-----DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYK 102

Query: 183 CRLIDPKSTNTTPLAQADFD---VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW 239
           C   +    +   +   D+    +        V  +T  + + + + CL   S       
Sbjct: 103 CFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLC 162

Query: 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299
               +  F   G  ++S   +KG       I    ++  G  +C     A  N +  ++ 
Sbjct: 163 ARYPEKRFVPDGN-RISWDSKKG-----FTIPSYMISYAGMVFC----EAKINDESYQSI 212

Query: 300 VYVRVK 305
           +Y+ V 
Sbjct: 213 MYIVVV 218

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 77.9 bits (191), Expect = 5e-16
 Identities = 34/216 (15%), Positives = 57/216 (26%), Gaps = 46/216 (21%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
              +       PPP    +I WYK    +      S    ++   +TI + +  D G Y+
Sbjct: 347 RVRIPAKYLGYPPP----EIKWYKNGIPLE-----SNHTIKAGHVLTIMEVSERDTGNYT 397

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPT----AKLVETLTVIEGEKLRLECLVVGSPPP-TV 237
             L +P S            V + P     + +    +   G    L C V   PPP  +
Sbjct: 398 VILTNPISKEKQS-HVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI 456

Query: 238 EWRIGNDTYFRSQGRIKLSEHPEK----------------------------GTANSVLQ 269
            W    +    ++    +S                                 G   +V  
Sbjct: 457 HWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVST 516

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           +          Y C   N   R  +      +V   
Sbjct: 517 LVIQAANVSALYKCEAVNKVGRGER--VISFHVTRG 550

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 62.1 bits (150), Expect = 7e-11
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 15/140 (10%)

Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV 229
           ++   +     + C      S    P    D   +        + LT+     L++ C  
Sbjct: 1   MQSKVLLAVALWLCVETRAASV-GLPSVSLDLPRLSIQK----DILTIKANTTLQITC-- 53

Query: 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
            G       W    +    S+ R++++E  + G     L I +    D G Y C      
Sbjct: 54  RGQRDLDWLW---PNNQSGSEQRVEVTECSD-GLFCKTLTIPKVIGNDTGAYKCFYRETD 109

Query: 290 TRNSQPNEAFVYVRVKGKSF 309
             +      +VYV+     F
Sbjct: 110 LASV----IYVYVQDYRSPF 125

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  100 bits (251), Expect = 7e-24
 Identities = 52/297 (17%), Positives = 85/297 (28%), Gaps = 28/297 (9%)

Query: 30  DTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATAN--LTEDNFKYSIH-- 85
                E     + C LT  E   + L G        D  F       +   + K + H  
Sbjct: 123 SLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRL 182

Query: 86  ----EAILESGYVQSSLFIPRMNAITGNYD-IEPKYKVFEYRV--PFTLKCNVTSPPPGD 138
                   E   V S  FI ++         +      +  R    FT+ C +       
Sbjct: 183 CLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSS- 241

Query: 139 DYQIVWYKGNKSITEA----TELSGRLTQSKDSI-TIRKTTVDDAGQYSCRLIDPKSTNT 193
                W + N          +   G     + +  TI    V+D+G + C   +   +  
Sbjct: 242 -VYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300

Query: 194 TPLAQADFDVIMKP----TAKLVETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFR 248
                   +V+ K        +  T+ V +GE + L       P P   +W   N T+  
Sbjct: 301 ---VTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD 357

Query: 249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
                  SE+       S L +      + G Y    +N     +      VYV  K
Sbjct: 358 KWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAI--AFNVYVNTK 412

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 91.3 bits (226), Expect = 1e-20
 Identities = 44/291 (15%), Positives = 81/291 (27%), Gaps = 36/291 (12%)

Query: 30  DTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL 89
           D  +  G  I + C       VKW     +    +  + +        +  KY+      
Sbjct: 45  DLIVRVGDEIRLLCTDP--GFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTN--- 99

Query: 90  ESGYVQS-SLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN 148
           + G   S  +F+     +     +  +    +      ++C +T P           KG 
Sbjct: 100 KHGLSNSIYVFVRDPAKLF----LVDRSLYGKEDNDTLVRCPLTDPEV----TNYSLKGC 151

Query: 149 KSITEATELSGRLTQSKDS---ITIRKTTV-DDAGQYSCRLIDPKSTNTTPLAQADFDVI 204
               +   L   L    D    I I+            C            +    F + 
Sbjct: 152 ----QGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCS----VDQEGKSVLSEKFILK 203

Query: 205 MKPTAKLV-------ETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLS 256
           ++P  K V        +  + EGE+  + C +          W+  N      +      
Sbjct: 204 VRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWH 263

Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
                    + L I  A + D G + C+ NN     +      + V  KG 
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANV--TTTLEVVDKGF 312

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 87.0 bits (215), Expect = 3e-19
 Identities = 48/329 (14%), Positives = 86/329 (26%), Gaps = 55/329 (16%)

Query: 13  IFVHQSISADGKITYF-GDTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSSVDSG 68
           + V  +  A   ++       + EG    ++C +          W+            + 
Sbjct: 202 LKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS 261

Query: 69  FAATANLTEDNFKYSIHEAILE------------SGYVQSSLFI-----PRMNAITGNYD 111
           +       E     +I  A +              G    +  +       +N       
Sbjct: 262 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMI-- 319

Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---- 166
                 V +      L       P P       W   N++ T+  E   +     +    
Sbjct: 320 -NTTVFVNDGE-NVDLIVEYEAFPKP---EHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374

Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVETLTVIEGEKL 223
             + + +    + G Y+  +     +N+   A   F   V  KP     E LT       
Sbjct: 375 SELHLTRLKGTEGGTYTFLV-----SNSDVNAAIAFNVYVNTKP-----EILTYDRLVNG 424

Query: 224 RLECLVVGSPPPTVEWRIGNDTYFR-------SQGRIKLSEHPEKGTANSVLQIDEATMA 276
            L+C+  G P PT++W     T  R          +   S  P  G       ID +   
Sbjct: 425 MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFK 484

Query: 277 DRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
             G   C   N   + S         +  
Sbjct: 485 HNGTVECKAYNDVGKTSA--YFNFAFKGN 511

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 52.4 bits (125), Expect = 8e-08
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 26/137 (18%)

Query: 176 DDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVET-LTVIEGEKLRLECLVVGS 232
             A  + C L+       T  +Q          P+    ++ L V  G+++RL C    +
Sbjct: 5   RGAWDFLCVLLL-LLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC----T 59

Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292
            P  V+W       F        ++        +    ++A   + G Y C   +  +  
Sbjct: 60  DPGFVKW------TFEILDETNENKQ-------NEWITEKAEATNTGKYTCTNKHGLSN- 105

Query: 293 SQPNEAFVYVRVKGKSF 309
                 +V+VR   K F
Sbjct: 106 ----SIYVFVRDPAKLF 118

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 95.3 bits (237), Expect = 1e-23
 Identities = 38/190 (20%), Positives = 56/190 (29%), Gaps = 37/190 (19%)

Query: 125 FTLKCNVTS--PPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
             L   VT          ++ W     +I      S R+          + I + T +D 
Sbjct: 20  IQLYSFVTYYVEDL----KVNWSHNGSAIRY----SDRVKTGVTGEQIWLQINEPTPNDK 71

Query: 179 GQYSCR-----------------LIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIE 219
           G+Y                      D        L QA      +      L + +T+ E
Sbjct: 72  GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131

Query: 220 GEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
           G+ L L C V G PPP V W   N+          L     +    +   I+  + AD G
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLK-NEKALAQTDHCNLKFEAGR---TAYFTINGVSTADSG 187

Query: 280 NYYCHGNNVA 289
            Y     N  
Sbjct: 188 KYGLVVKNKY 197

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 219 EGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
             E ++L   V        V W   N +  R   R+K     E+      LQI+E T  D
Sbjct: 16  TAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQIW----LQINEPTPND 70

Query: 278 RGNYYCHGNNVATRNS 293
           +G Y     +  T + 
Sbjct: 71  KGKYVMELFDGKTGHQ 86

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 94.0 bits (234), Expect = 3e-23
 Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 26/176 (14%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
              L C +   P P     I WY+  K + +    S +   S D    ++T+     +D 
Sbjct: 24  AAQLSCQIVGRPLP----DIKWYRFGKELIQ----SRKYKMSSDGRTHTLTVMTEEQEDE 75

Query: 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPT----AKLVETLTVIEGEKLRLECLVVGSPP 234
           G Y+C   +      T    +   +   P       L E      G  LRL  + +G P 
Sbjct: 76  GVYTCIATNEVGEVET---SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPV 132

Query: 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM-ADRGNYYCHGNNVA 289
           P + W  G     ++   I +          + L +         G Y    +NV 
Sbjct: 133 PAMTWFHGQKL-LQNSENITIENTEH----YTHLVMKNVQRKTHAGKYKVQLSNVF 183

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           +T   GE  +L C +VG P P ++W            + K+S      T    L +    
Sbjct: 17  VTTKLGEAAQLSCQIVGRPLPDIKWYR-FGKELIQSRKYKMSSDGRTHT----LTVMTEE 71

Query: 275 MADRGNYYCHGNNVA 289
             D G Y C   N  
Sbjct: 72  QEDEGVYTCIATNEV 86

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 46/182 (25%)

Query: 30  DTEIMEGAPINISCILTIFE-----QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYS- 83
           D     G    +SC            +KW   G+ + QS           ++ D   ++ 
Sbjct: 16  DVTTKLGEAAQLSCQ---IVGRPLPDIKWYRFGKELIQSR-------KYKMSSDGRTHTL 65

Query: 84  -IHEAILE------------SGYVQSS--LFIPRMNAITGNYDIEPKYKVFEYRVPFTLK 128
            +     E             G V++S  L +         Y ++ KY          L 
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGS-TLRLH 124

Query: 129 CNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRK-TTVDDAGQYS 182
                 P P     + W+ G K +      S  +T         + ++       AG+Y 
Sbjct: 125 VMYIGRPVP----AMTWFHGQKLLQN----SENITIENTEHYTHLVMKNVQRKTHAGKYK 176

Query: 183 CR 184
            +
Sbjct: 177 VQ 178

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 93.4 bits (232), Expect = 4e-23
 Identities = 45/187 (24%), Positives = 64/187 (34%), Gaps = 22/187 (11%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
           P TL+CN+T S          W K    +T       R   S     I K   +D+G+Y 
Sbjct: 20  PVTLQCNLTSSSHT--LMYSYWTKNGVELTA-----TRKNASNMEYRINKPRAEDSGEYH 72

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEW-R 240
           C         + P A A  +V   P       +    EG+   + C  VG P P   W +
Sbjct: 73  CV----YHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRK 128

Query: 241 IGN---DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297
             N   +    S GR  +     K     +  ++     D G Y C+  N     S    
Sbjct: 129 KENGVFEEISNSSGRFFII---NKENYTELNIVNLQITEDPGEYECNATNSIGSASV--S 183

Query: 298 AFVYVRV 304
             + VRV
Sbjct: 184 TVLRVRV 190

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 11/93 (11%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E +       + L+C +  S    +        + ++   +  +       +N   +I++
Sbjct: 11  EVIIRDSLLPVTLQCNLTSSSHTLMYSY-----WTKNGVELTATRKNA---SNMEYRINK 62

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
               D G Y+C  + V+   +    A + V+  
Sbjct: 63  PRAEDSGEYHCVYHFVSAPKAN---ATIEVKAA 92

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 93.3 bits (232), Expect = 8e-23
 Identities = 43/198 (21%), Positives = 63/198 (31%), Gaps = 31/198 (15%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI--RKTTVDDAGQ 180
             +  C  T  P P    +IVW K  K ++              S+       T  D   
Sbjct: 23  VASFICQATGDPRP----KIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAI 78

Query: 181 YSCRLIDPKSTNT--TPLAQADFDVIMKPTAKLV--------ETLTVIEGEKLRLECLVV 230
           Y C      ++N            V+ +              +   V       + C   
Sbjct: 79  YECV-----ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS 133

Query: 231 GSPPPTVEWRIGND--TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
           G+P P + W           + GRIK       G     LQI+++  +D+G Y C   N 
Sbjct: 134 GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA----LQIEQSEESDQGKYECVATNS 189

Query: 289 A-TRNSQPNEAFVYVRVK 305
           A TR S    A +YVR  
Sbjct: 190 AGTRYSA--PANLYVRGT 205

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
              T + G      C   G P P + W         +Q    +        + SVL+I  
Sbjct: 14  VDQTGVSGGVASFICQATGDPRPKIVWNK-KGKKVSNQRFEVI---EFDDGSGSVLRIQP 69

Query: 273 A-TMADRGNYYCHGNNVA 289
             T  D   Y C  +N  
Sbjct: 70  LRTPRDEAIYECVASNNV 87

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 93.4 bits (232), Expect = 8e-23
 Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 47/198 (23%)

Query: 124 PFTLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
              L C  T  P      Q  W+K NK I      +  L             V DAG Y 
Sbjct: 35  FVKLCCRATGHPFV----QYQWFKMNKEIPNGN--TSELI-------FNAVHVKDAGFYV 81

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLV----------------ETLTVIEGEKLRLE 226
           CR+ +  +   +    +  DV   P +                    +  ++ G  L L+
Sbjct: 82  CRVNNNFTFEFS--QWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQ 139

Query: 227 CLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
           C+ VGSP P  +W       F+++  +             +  +    +  +G Y+CH  
Sbjct: 140 CVAVGSPIPHYQW-------FKNELPLTHET-------KKLYMVPYVDLEHQGTYWCHVY 185

Query: 287 NVA-TRNSQPNEAFVYVR 303
           N   +++S+  E  +   
Sbjct: 186 NDRDSQDSKKVEIIIDEL 203

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 59.9 bits (145), Expect = 7e-11
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 17/98 (17%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E+  V+ G+ ++L C   G P    +W       F+    I            S L  + 
Sbjct: 26  ESKAVLAGQFVKLCCRATGHPFVQYQW-------FKMNKEIPNGN-------TSELIFNA 71

Query: 273 ATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGKSF 309
             + D G Y C  NN      SQ   + + V    +SF
Sbjct: 72  VHVKDAGFYVCRVNNNFTFEFSQ--WSQLDVCDIPESF 107

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 95.6 bits (237), Expect = 9e-23
 Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 24/195 (12%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
                C +          I WYK +     +TE + R+ Q K+ +      V+D+G Y C
Sbjct: 22  IDVRPCPLNPNEHK--GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYC 79

Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTA-----KLVETLTVIEGEKLRLECLVV------GS 232
            + +          +     +          + +    +       L C  +       +
Sbjct: 80  VVRNSSYCLR---IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENN 136

Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292
             P ++W            +  L ++         L +       RGNY CH +      
Sbjct: 137 ELPKLQWYKD--------CKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK 188

Query: 293 SQPNEAFVYVRVKGK 307
             P    +      +
Sbjct: 189 QYPITRVIEFITLEE 203

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 86.7 bits (214), Expect = 1e-19
 Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 30/200 (15%)

Query: 113 EPKYKVFEYRVPFTLKCNVT-------SPPPGDDYQIVWYKGNKSITEATELSGRLTQSK 165
               +         L C          +  P    ++ WYK  K +      +   +  K
Sbjct: 109 AIFKQKLPVAGDGGLVCPYMEFFKNENNELP----KLQWYKDCKPLLLD---NIHFSGVK 161

Query: 166 DSITIRKTTVDDAGQYSCRL------IDPKSTNTTPLAQADFDVIMKP--TAKLVETLTV 217
           D + +        G Y+C             T        + +   +P   +   ET+ V
Sbjct: 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV 221

Query: 218 IEGEKLRLECLVVGSPPPTVEWRIGN-------DTYFRSQGRIKLSEHPEKGTANSVLQI 270
             G +++L C V G       W+                   ++   +  + T  +VL I
Sbjct: 222 DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNI 281

Query: 271 DEATMAD-RGNYYCHGNNVA 289
            E      +  + C   N  
Sbjct: 282 SEIESRFYKHPFTCFAKNTH 301

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPP-TVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
             L     E     C +  +    T+ W +  + T   ++   ++ +H         L  
Sbjct: 13  IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH------KEKLWF 66

Query: 271 DEATMADRGNYYCHGNNVA 289
             A + D G+YYC   N +
Sbjct: 67  VPAKVEDSGHYYCVVRNSS 85

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 96.5 bits (240), Expect = 2e-22
 Identities = 39/215 (18%), Positives = 68/215 (31%), Gaps = 19/215 (8%)

Query: 105 AITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQ 163
            +   Y+ +   +         +KC + S        + W+    ++     E  G+   
Sbjct: 136 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195

Query: 164 SKD-SITIRKTTVDDA-GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV--------- 212
                + IR+   +D    Y CR     +  T   A     VI +P +  V         
Sbjct: 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           +  T      + L C   G P P   W    +   R Q  + L++  ++   +  L I +
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQ-AVVLNDRVKQV--SGTLIIKD 312

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
           A + D G Y C  NN              + V   
Sbjct: 313 AVVEDSGKYLCVVNNSVGG----ESVETVLTVTAP 343

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 96.2 bits (239), Expect = 4e-22
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 32/206 (15%)

Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170
           I+P  +  ++  P    C  T +P       + W K  K           +  S+  + I
Sbjct: 348 IDPPTQTVDFGRPAVFTCQYTGNPIK----TVSWMKDGK----------AIGHSESVLRI 393

Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA------KLVETLTVIEGEKLR 224
                +D G Y C        N    A+A  ++ +          +  +  T+  G  + 
Sbjct: 394 ESVKKEDKGMYQCF-----VRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVF 448

Query: 225 LECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP-EKGTANSVLQIDEATMADRGNYYC 283
           L+C+  G+P P + W + +     +  R ++ ++    G   S L I      D G Y C
Sbjct: 449 LKCVAGGNPTPEISWEL-DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507

Query: 284 HGNNVATRNSQPNEAFVYVRVKGKSF 309
              +         E    + V G  +
Sbjct: 508 IAKSKVGV----AEHSAKLNVYGLPY 529

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 93.8 bits (233), Expect = 2e-21
 Identities = 55/307 (17%), Positives = 92/307 (29%), Gaps = 69/307 (22%)

Query: 30  DTEIMEGAPINISCILTIFEQ--VKWQLNGRNINQSS----------VDSG----FAATA 73
              +  G P   +C  T      V W  +G+ I  S            D G    F    
Sbjct: 352 TQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFV--- 408

Query: 74  NLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVT- 132
               ++ + +   A L+   +      P +        +EP   V        LKC    
Sbjct: 409 ---RNDRESAEASAELK---LGGRFDPPVIRQAFQEETMEPGPSV-------FLKCVAGG 455

Query: 133 SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI---------TIRKTTVDDAGQYSC 183
           +P P    +I W    K I      + R    +             I     +D G Y C
Sbjct: 456 NPTP----EISWELDGKKIAN----NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507

Query: 184 RLIDPKSTNT--TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
                 + +        A  +V   P  + +E   ++ GE L + C V G P  ++ W  
Sbjct: 508 I-----AKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWER 562

Query: 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA-DRGNYYCHGNNVATRNSQPNEAFV 300
            ++       + K+         N  L I+      D+  Y C   N    ++      +
Sbjct: 563 -DNRALPINRKQKVFP-------NGTLIIENVERNSDQATYTCVAKNQEGYSA---RGSL 611

Query: 301 YVRVKGK 307
            V+V   
Sbjct: 612 EVQVMVL 618

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 93.5 bits (232), Expect = 3e-21
 Identities = 51/295 (17%), Positives = 100/295 (33%), Gaps = 63/295 (21%)

Query: 28  FGDTEIMEGAPINISCILTIF--EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH 85
           F +  +  G  + + C+       ++ W+L+G+ I  +                 +Y + 
Sbjct: 436 FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND----------------RYQVG 479

Query: 86  EAILESGYVQSSLFIPRMNAI-TGNY-----------------DIE--------PKYKVF 119
           + +  +G V S L I  ++A   G Y                 ++          K  + 
Sbjct: 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIV 539

Query: 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVD-D 177
                  + C V   P      IVW + N+++      + +     + ++ I     + D
Sbjct: 540 AGE-TLIVTCPVAGYPI---DSIVWERDNRALPI----NRKQKVFPNGTLIIENVERNSD 591

Query: 178 AGQYSCRLIDPKSTNTTPLAQADFDVIMKPT--AKLVETLTVIEGEKLRLECLVVGSPPP 235
              Y+C   + +  +       +  V++ P       E      G+ L L C V G   P
Sbjct: 592 QATYTCVAKNQEGYSAR--GSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649

Query: 236 -TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
             ++W + +         I  S    +    SVL I+    +  GN+ CH  N+A
Sbjct: 650 LNIDWTL-DGQAISEDLGITTSRVGRR---GSVLTIEAVEASHAGNFTCHARNLA 700

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 89.6 bits (222), Expect = 6e-20
 Identities = 49/278 (17%), Positives = 90/278 (32%), Gaps = 22/278 (7%)

Query: 24  KITYFGDTEIMEGAPINISCILTIF--EQVKWQLNGRNINQSSVDSGFA------ATANL 75
            I       I+ G  + ++C +  +  + + W+ + R +  +     F            
Sbjct: 529 YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVER 588

Query: 76  TEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPP 135
             D   Y+   A  + GY        ++  +        +    +     TL C+V    
Sbjct: 589 NSDQATYTCV-AKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD 647

Query: 136 PGDDYQIVWYKGNKSITEATELSGRLTQSKDS-ITIRKTTVDDAGQYSCRLIDP--KSTN 192
                 I W    ++I+E   ++      + S +TI       AG ++C   +       
Sbjct: 648 L--PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF 705

Query: 193 TTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG 251
           TTPL     +V + P   L        +G   ++EC   G P P V W+           
Sbjct: 706 TTPL-----NVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK 760

Query: 252 RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
            +K S++         L +D     + G Y C   N  
Sbjct: 761 DLKKSDNI--RVEEGTLHVDNIQKTNEGYYLCEAINGI 796

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 67.7 bits (165), Expect = 1e-12
 Identities = 15/123 (12%), Positives = 29/123 (23%), Gaps = 3/123 (2%)

Query: 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLE 226
            +    +     ++   +    + T   A         P    +    +         +E
Sbjct: 2   NMPNERLKWLMLFAAVALIACGSQTL-AANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 227 CLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
           C   G+P P + W   + T       ++      K         D         Y C   
Sbjct: 61  CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120

Query: 287 NVA 289
           N  
Sbjct: 121 NQF 123

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 93.6 bits (232), Expect = 3e-22
 Identities = 45/298 (15%), Positives = 86/298 (28%), Gaps = 41/298 (13%)

Query: 33  IMEGAPINISCILTIFEQVKWQLNGRNINQS-SVDSGFAATANLT------EDNFKYSIH 85
           +   +   ++C  +    V W+   +   Q  +       ++ LT       D  +Y   
Sbjct: 12  LNVSSTFVLTCSGS--APVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFC- 68

Query: 86  EAILESGYVQSS-----LFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY 140
                 G          +F+P         D E  +         T+ C VT P      
Sbjct: 69  THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQL---- 124

Query: 141 QIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC------RLIDPKSTNTT 194
            +  ++    +        +            + + +   Y C      R +D  +    
Sbjct: 125 VVTLHEKKGDVALPVPYDHQRGF---------SGIFEDRSYICKTTIGDREVDSDAYYVY 175

Query: 195 PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIK 254
            L  +  +V +           V +GE + L C+V+G+     EW        R    + 
Sbjct: 176 RLQVSSINVSVNA-----VQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230

Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYD 312
                      S+L I  A + D G Y C+       N   +E  + + V      + 
Sbjct: 231 DFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESV--NDHQDEKAINITVVESGHHHH 286

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 14/108 (12%)

Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
           +++ P       L +       L C    S    V W         SQ   +     + G
Sbjct: 1   LVVTPPG---PELVLNVSSTFVLTC----SGSAPVVW------ERMSQEPPQEMAKAQDG 47

Query: 263 TANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGKSF 309
           T +SVL +   T  D G Y+C  N+       +    +++V      F
Sbjct: 48  TFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGF 95

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 93.1 bits (231), Expect = 3e-22
 Identities = 47/293 (16%), Positives = 89/293 (30%), Gaps = 56/293 (19%)

Query: 30  DTEIMEGAPINISCILTIF---EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHE 86
              + +   + + C +         +W LNG     S                  Y I  
Sbjct: 10  WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS---------------TPSYRITS 54

Query: 87  AILE---------SGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPG 137
           A +              +S     ++    G   ++   +VF    P  L+C+       
Sbjct: 55  ASVNDSGEYRCQRGLSGRSDPI--QLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKL- 111

Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
             Y +++Y+  K+         +      ++TI KT +   G Y C  +      +  ++
Sbjct: 112 -VYNVLYYRNGKAF--------KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGIS 162

Query: 198 QADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPP-PTVEWRIGNDTYFRSQGRIKLS 256
               ++   P      T  ++EG  + L C        P ++       YF        S
Sbjct: 163 VTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQL------YFSFY---MGS 213

Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVA---TRNSQPNEAFVYVRVKG 306
           +       +S  QI  A   D G Y+C          + S      + ++V G
Sbjct: 214 KTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPE----LELQVLG 262

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 91.5 bits (227), Expect = 1e-21
 Identities = 32/187 (17%), Positives = 50/187 (26%), Gaps = 31/187 (16%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             TL C V   P        W+    +             S  S  I   +V+D+G+Y C
Sbjct: 18  TVTLHCEVLHLPG--SSSTQWFLNGTATQT----------STPSYRITSASVNDSGEYRC 65

Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPP-PTVEWRIG 242
           +        +        ++        V +    EGE L L C          V +   
Sbjct: 66  Q-----RGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRN 120

Query: 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
                         +  +    NS L I +  ++  G Y+C G       S      V  
Sbjct: 121 G-------------KAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE 167

Query: 303 RVKGKSF 309
                  
Sbjct: 168 LFPAPVL 174

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 91.8 bits (228), Expect = 3e-22
 Identities = 41/199 (20%), Positives = 65/199 (32%), Gaps = 37/199 (18%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK----TTVDDA 178
             +  C     PPP     IVW K  K +   T+    + +    I+I +        D 
Sbjct: 23  VASFYCAARGDPPP----SIVWRKNGKKV-SGTQSRYTVLEQPGGISILRIEPVRAGRDD 77

Query: 179 GQYSCRLIDPKSTN---TTPLAQADFDVIMKPTAKLV--------ETLTVIEGEKLRLEC 227
             Y C      + N       A A   +                  T  +  G  + + C
Sbjct: 78  APYECV-----AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTC 132

Query: 228 LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
             +G+P P + W         S  R  L         +  LQI+ +   D+G Y C   N
Sbjct: 133 KAIGNPTPNIYWIKNQTKVDMSNPRYSLK--------DGFLQIENSREEDQGKYECVAEN 184

Query: 288 VA-TRNSQPNEAFVYVRVK 305
              T +S+     +YV+V+
Sbjct: 185 SMGTEHSKA--TNLYVKVR 201

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           +   V  G      C   G PPP++ WR        +Q R  + E        S+L+I+ 
Sbjct: 14  QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ---PGGISILRIEP 70

Query: 273 ATMA-DRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
                D   Y C   N          A   + +    
Sbjct: 71  VRAGRDDAPYECVAENGV---GDAVSADATLTIYEGD 104

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 94.4 bits (234), Expect = 3e-22
 Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 29/200 (14%)

Query: 124 PFTLKCNVT--------SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTV 175
           P  L+C           SP       + W+K + + T   E   R+     ++ +     
Sbjct: 35  PVALRCPQVPYWLWASVSPRI----NLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQ 90

Query: 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA---KLVETLTVIEGEKLRLEC----- 227
           +D+G Y C   +    +       +  V     A    +     +       L C     
Sbjct: 91  EDSGTYVCTTRNASYCDK---MSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE 147

Query: 228 LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
                    ++W   +    +   +             + L + +  + D G Y C    
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG------TTHLLVHDVALEDAGYYRCVLTF 201

Query: 288 VATRNSQPNEAFVYVRVKGK 307
                       + +R+K K
Sbjct: 202 AHEGQQYNITRSIELRIKKK 221

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 79.0 bits (194), Expect = 9e-17
 Identities = 46/320 (14%), Positives = 92/320 (28%), Gaps = 60/320 (18%)

Query: 18  SISADGKITYFGDTEIMEGAPINISCILTIFE---------QVKWQLNGRNINQSSVDSG 68
           + S   +  ++     +EG P+ + C    +           + W  N         +  
Sbjct: 15  ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEET 74

Query: 69  FAATANLTEDNFKYSIHEAILE------------SGYVQSSLFIPRMNAITGNYDIEPKY 116
                 +   +    +  A+ E            S   + S+ +                
Sbjct: 75  -----RMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYP 129

Query: 117 KVFEYRVPFTLKCNVT------SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170
           ++        L C                 +I WYK +  + +  E      +    + +
Sbjct: 130 QILTLSTSGVLVCPDLSEFTRDKTDV----KIQWYKDSLLLDKDNEKF-LSVRGTTHLLV 184

Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV--------ETLTVIEGEK 222
               ++DAG Y C L                ++ +K   +          +T++   G +
Sbjct: 185 HDVALEDAGYYRCVLTFAHEGQQYN-ITRSIELRIKKKKEETIPVIISPLKTISASLGSR 243

Query: 223 LRLECLV---VGSPPPTVEWRIGNDTY---------FRSQGRIKLSEHPEKGTANSVLQI 270
           L + C V    G+P  T+ W   NDT+              R + SE+  +      L  
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSEN-NENYIEVPLIF 302

Query: 271 DEATMADRG-NYYCHGNNVA 289
           D  T  D   ++ C  +N  
Sbjct: 303 DPVTREDLHMDFKCVVHNTL 322

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 23/132 (17%)

Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLEC-------LVVGSPPPTVE 238
           + P +      +        K           +EGE + L C           SP   + 
Sbjct: 6   LQPAAHTGAARSCRFRGRHYKRE-------FRLEGEPVALRCPQVPYWLWASVSPRINLT 58

Query: 239 W-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297
           W +  +      +   ++         +  L +  A   D G Y C   N +  +     
Sbjct: 59  WHKNDSARTVPGEEETRMWAQ------DGALWLLPALQEDSGTYVCTTRNASYCDKM--S 110

Query: 298 AFVYVRVKGKSF 309
             + V     +F
Sbjct: 111 IELRVFENTDAF 122

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 91.0 bits (226), Expect = 3e-22
 Identities = 36/175 (20%), Positives = 55/175 (31%), Gaps = 27/175 (15%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQY 181
              + C V+ SP P     + W   N+ +T  +    R     + ++ I      D G Y
Sbjct: 19  DAEVVCRVSSSPAP----AVSWLYHNEEVTTIS--DNRFAMLANNNLQILNINKSDEGIY 72

Query: 182 SCR-------LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPP 234
            C         ID +             +  K         T   GE++   C   GSP 
Sbjct: 73  RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKS-----FNATAERGEEMTFSCRASGSPE 127

Query: 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
           P + W   N        +  L        +N+ L +     +D G Y C   N A
Sbjct: 128 PAISWF-RNGKLIEENEKYILKG------SNTELTVRNIINSDGGPYVCRATNKA 175

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 70.6 bits (173), Expect = 8e-15
 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
           ++V      +GE   + C V  SP P V W     +    S  R  +         N+ L
Sbjct: 7   EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-------NNNL 59

Query: 269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           QI     +D G Y C G   A       +  V V V 
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP 96

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 90.9 bits (225), Expect = 4e-22
 Identities = 33/173 (19%), Positives = 51/173 (29%), Gaps = 24/173 (13%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
              L C++      +     W KG   + E      +          +  + D  G+YSC
Sbjct: 15  KILLTCSLNDSAT-EVTGHRWLKGGVVLKEDALPGQKTE-------FKVDSDDQWGEYSC 66

Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT-VEWRIG 242
             +                V          +  + EGE   L C     PP T   W   
Sbjct: 67  VFLPEPMGTANIQLHGPPRVKAVK-----SSEHINEGETAMLVCKSESVPPVTDWAWYKI 121

Query: 243 NDT-----YFRSQGRIKLSEHPEKGTANSVLQIDEATMA-DRGNYYCHGNNVA 289
            D+        S+ R  +S    +      L I+   M  D G Y C+G +  
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSE----LHIENLNMEADPGQYRCNGTSSK 170

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 10/76 (13%)

Query: 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
           V T     G K+ L C +  S             + +    +K    P         +  
Sbjct: 5   VFTTVEDLGSKILLTCSLNDSATEVTGH-----RWLKGGVVLKEDALP-----GQKTEFK 54

Query: 272 EATMADRGNYYCHGNN 287
             +    G Y C    
Sbjct: 55  VDSDDQWGEYSCVFLP 70

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 90.3 bits (224), Expect = 4e-22
 Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 36/182 (19%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           TL C     P  D  Q  W+     I   T+               K   +D+G+Y+C+ 
Sbjct: 23  TLTCQGARSPESDSIQ--WFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQ- 69

Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGND 244
               +  T+        V+ +        L   EGE + L C      P   V +   N 
Sbjct: 70  ----TGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQ-NG 124

Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR-NSQPNEAFVYVR 303
              +                +    I +A  +  G+Y+C GN   T  +S+P    V + 
Sbjct: 125 KSQKFSHL------------DPTFSIPQANHSHSGDYHCTGNIGYTLFSSKP----VTIT 168

Query: 304 VK 305
           V+
Sbjct: 169 VQ 170

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 16/73 (21%)

Query: 216 TVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
            V++ + + L C    SP   +++W       F +   I         T        +A 
Sbjct: 15  NVLQEDSVTLTCQGARSPESDSIQW-------FHNGNLIP--------THTQPSYRFKAN 59

Query: 275 MADRGNYYCHGNN 287
             D G Y C    
Sbjct: 60  NNDSGEYTCQTGQ 72

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 92.7 bits (230), Expect = 6e-22
 Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 15/190 (7%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQ-SKDSITIRKTTVDDAGQYS 182
              L C +T P    +  +   +               +       TI +     +  Y 
Sbjct: 106 DALLPCLLTDPVL--EAGVSLVRVRGRPLMR---HTNYSFSPWHGFTIHRAKFIQSQDYQ 160

Query: 183 CR-LIDPKSTNTTPLAQADFDVIMKPTAKLVE--TLTVIEGEKLRLECLVVGSPPPTVEW 239
           C  L+  +   +  +      VI  P A  +    L  I GE  ++ C           +
Sbjct: 161 CSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220

Query: 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299
              N+T      +     H  +      L +D+      GNY C  +NV  ++S      
Sbjct: 221 LQHNNTKLAIPQQSDF--HNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHS----TS 274

Query: 300 VYVRVKGKSF 309
           ++ RV   + 
Sbjct: 275 MFFRVVESAG 284

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 74.6 bits (183), Expect = 2e-15
 Identities = 26/191 (13%), Positives = 42/191 (21%), Gaps = 32/191 (16%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             TL+C            + W         +   +     S   ++    T  + G Y C
Sbjct: 21  TVTLRCVGNGS-------VEWDGPP-----SPHWTLYSDGSSSILSTNNATFQNTGTYRC 68

Query: 184 RLIDPKSTNTTPLAQADFDVIMK----PTAKLVETLTVIEGEKLRLECLVVGSPP-PTVE 238
                          A   + +K    P   L + + V E +   L CL+        V 
Sbjct: 69  T-----EPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVS 123

Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG-NNVATRNSQPNE 297
                            S             I  A      +Y C          S    
Sbjct: 124 LVRVRGRPLMRHTNYSFSP-------WHGFTIHRAKFIQSQDYQCSALMGGRKVMSIS-- 174

Query: 298 AFVYVRVKGKS 308
             + V+     
Sbjct: 175 IRLKVQKVIPG 185

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 51.9 bits (124), Expect = 8e-08
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 16/97 (16%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
             L V  G  + L C+  G    +VEW      ++                ++S+L  + 
Sbjct: 12  PELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLY----------SDGSSSILSTNN 57

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
           AT  + G Y C         S      +YV+   + +
Sbjct: 58  ATFQNTGTYRCTEPGDPLGGS--AAIHLYVKDPARPW 92

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 93.1 bits (231), Expect = 9e-22
 Identities = 38/191 (19%), Positives = 61/191 (31%), Gaps = 37/191 (19%)

Query: 124 PFTLKCNVTS--PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQY 181
              L C      P        VW K    +      S R+      + +   + +D+G Y
Sbjct: 25  AVELSCPPPGGGPMG----PTVWVKDGTGLVP----SERVLVGPQRLQVLNASHEDSGAY 76

Query: 182 SC--------------RLIDPKSTNTTPLAQADFD---------VIMKPTAKLVETLTVI 218
           SC              R+ D  S+      + + +            +P     + L V 
Sbjct: 77  SCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136

Query: 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278
               +R  C   G+P P++ W   N   FR + RI   +          L ++    +DR
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRH---QQWSLVMESVVPSDR 192

Query: 279 GNYYCHGNNVA 289
           GNY C   N  
Sbjct: 193 GNYTCVVENKF 203

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 90.1 bits (223), Expect = 1e-20
 Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 27/184 (14%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQY 181
               +C    +P P     I W K  +       + G   + +  S+ +      D G Y
Sbjct: 140 TVRFRCPAAGNPTP----SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNY 195

Query: 182 SCRLIDPKSTNT--TPLAQADFDVIMKP------TAKLVETLTVIEGEKLRLECLVVGSP 233
           +C        N   +       DV+ +        A L    T + G  +   C V    
Sbjct: 196 TCV-----VENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA 250

Query: 234 PPTVEWR---IGNDTYFRSQGRIKLSEHPEKGT-----ANSVLQIDEATMADRGNYYCHG 285
            P ++W      N +     G   ++     G         VL +   T  D G Y C  
Sbjct: 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310

Query: 286 NNVA 289
            N  
Sbjct: 311 GNSI 314

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 62.3 bits (151), Expect = 3e-11
 Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 206 KPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264
            P     E L    G+ + L C    G P     W   + T      R+ +         
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGLVPSERVLVG-------- 59

Query: 265 NSVLQIDEATMADRGNYYCHGNNVAT 290
              LQ+  A+  D G Y C       
Sbjct: 60  PQRLQVLNASHEDSGAYSCRQRLTQR 85

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 92.4 bits (229), Expect = 9e-22
 Identities = 46/300 (15%), Positives = 83/300 (27%), Gaps = 52/300 (17%)

Query: 30  DTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSS----VDSGFAATANLT----EDNF 80
           + +      +N  C       +  W  +  +   S        G            +D  
Sbjct: 12  NVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLG 71

Query: 81  KYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVP------------FTLK 128
            YS  +     G   S L              E K+     +              F ++
Sbjct: 72  IYSC-DVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ 130

Query: 129 CNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAGQYSCRLI 186
               S       ++ +    K I E  +    + ++     + + K   +D G Y+ +L 
Sbjct: 131 AEKLSGNA----KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ 186

Query: 187 DPKSTNTT--------------PLAQADFDVIMKPTAKLVETL--TVIEGEKLRLECLVV 230
           D K+TN +                     + I K     VE L   V     + L+C V 
Sbjct: 187 DGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVA 246

Query: 231 GSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
                T + W       ++ +  I + E  +       L I E +  D G Y     +  
Sbjct: 247 NIKKETHIVW-------YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 299

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 87.7 bits (217), Expect = 5e-20
 Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 18/181 (9%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
               +C+  +P      +  W K   S  ++  L      +K  +T +   +DD G YSC
Sbjct: 20  SLNFECDKMTPKS----EFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSC 75

Query: 184 R-----------LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS 232
                       LID +          +      P    +    + +G+          S
Sbjct: 76  DVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLS 135

Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292
               V +   N+       + K+  H ++ T    + +++    D G Y     +    N
Sbjct: 136 GNAKVNYIF-NEKEIFEGPKYKM--HIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN 192

Query: 293 S 293
            
Sbjct: 193 H 193

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 205 MKP-TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263
           + P T ++V  +       L  EC    +P     W        +     + S   E  +
Sbjct: 2   IDPFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSW-------SKDYVSTEDSPRLEVES 53

Query: 264 AN--SVLQIDEATMADRGNYYCHGNNVATRNS 293
               + +   +  M D G Y C   +     S
Sbjct: 54  KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS 85

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 90.3 bits (224), Expect = 2e-21
 Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 25/180 (13%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSC 183
             +C    +P P     + W K  K   +   + G   +++  S+ +      D G Y+C
Sbjct: 38  KFRCPAGGNPMP----TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 93

Query: 184 RLIDPKSTNT--TPLAQADFDVIMKPTAK------LVETLTVIEGEKLRLECLVVGSPPP 235
            +      N   +       DV+ +   +      L    + + G  +   C V     P
Sbjct: 94  VV-----ENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP 148

Query: 236 TVEWR---IGNDTYFRSQGRIKLSEHPEKG---TANSVLQIDEATMADRGNYYCHGNNVA 289
            ++W      N + +   G   L      G   +   VL +   T AD G Y C  +N  
Sbjct: 149 HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYI 208

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
                         V     ++  C   G+P PT+ W   N   F+ + RI   +   + 
Sbjct: 17  YWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQ- 74

Query: 263 TANSVLQIDEATMADRGNYYCHGNNVA 289
             +  L ++    +D+GNY C   N  
Sbjct: 75  --HWSLIMESVVPSDKGNYTCVVENEY 99

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 93.0 bits (231), Expect = 2e-21
 Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 19/204 (9%)

Query: 113 EPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
             K  + + R    ++C    +P P       W + ++    A +    + +   ++ I 
Sbjct: 23  SAKDHIVDPRDNILIECEAKGNPAP----SFHWTRNSRFFNIAKDPRVSMRRRSGTLVID 78

Query: 172 ----KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLEC 227
                   +  G+Y C   +   T  +   +           + ++ + V EG  L L+C
Sbjct: 79  FRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQC 138

Query: 228 LVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD-RGNYYCHG 285
               G P P + W   +        R+           N  L      + D + +Y C+ 
Sbjct: 139 NPPPGLPSPVIFWMSSSMEPITQDKRVSQGH-------NGDLYFSNVMLQDMQTDYSCNA 191

Query: 286 NNVATR-NSQPNEAFVYVRVKGKS 308
               T    Q N   + V      
Sbjct: 192 RFHFTHTIQQKNPFTLKVLTTRGV 215

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 86.8 bits (215), Expect = 2e-19
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 18/166 (10%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
            L+C  +  P P     I WYK    +        +      ++ I   + +D+G+Y C 
Sbjct: 241 LLECIASGVPTP----DIAWYKKGGDLPSD---KAKFENFNKALRITNVSEEDSGEYFCL 293

Query: 185 LIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
                +   +        V   P      + L +  GE  RL C   G+P PTV+W +  
Sbjct: 294 ---ASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNG 350

Query: 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
           +    +              A   +   +  ++ R  Y C+ +N  
Sbjct: 351 EPLQSAPPNPNRE------VAGDTIIFRDTQISSRAVYQCNTSNEH 390

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 85.7 bits (212), Expect = 6e-19
 Identities = 40/197 (20%), Positives = 65/197 (32%), Gaps = 32/197 (16%)

Query: 124 PFTLKCNVTS--PPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTV-DDAG 179
           P TL+CN     P P     I W   +       +   R++Q  +  +      + D   
Sbjct: 133 PLTLQCNPPPGLPSP----VIFWMSSSMEPITQDK---RVSQGHNGDLYFSNVMLQDMQT 185

Query: 180 QYSC-----RLIDPKSTNTTPLAQADFDVIMKPTAKLV------ETLTVIEGEKLRLECL 228
            YSC          +  N   L       + + T   +       +  V+ G  L LEC+
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245

Query: 229 VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
             G P P + W        +  G +  S+  +    N  L+I   +  D G Y+C  +N 
Sbjct: 246 ASGVPTPDIAWY-------KKGGDL-PSDKAKFENFNKALRITNVSEEDSGEYFCLASNK 297

Query: 289 ATRNSQPNEAFVYVRVK 305
                      V V+  
Sbjct: 298 MGSIRH--TISVRVKAA 312

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 202 DVIMKPTAKLV------------ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
           ++ M P+ +              +   V   + + +EC   G+P P+  W   N  +F  
Sbjct: 2   EIPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNI 60

Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
               ++S     GT     +         G Y C   N  
Sbjct: 61  AKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKF 100

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 92.7 bits (230), Expect = 2e-21
 Identities = 52/306 (16%), Positives = 94/306 (30%), Gaps = 51/306 (16%)

Query: 30  DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQS-----------SVDSGFAATANL 75
           +   +EG P  + C+L        + W+      + +           +   G      +
Sbjct: 109 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 168

Query: 76  TE----DNFKYS--IHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV------ 123
           T+    D +KY      A ++   V     I  +      Y  EP  +     +      
Sbjct: 169 TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGD 228

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITE--ATELSGRLTQSKDSITIRKTTVDDAGQ 180
              + C    +P         ++K  K +       ++     S   +  + T  +D G 
Sbjct: 229 VTMIYCMYGSNPMG----YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGV 284

Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
           Y+C + +               V+  P    K  + + V +G+ + + C V G P P V 
Sbjct: 285 YTCEVDNGVGKPQK--HSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVV 342

Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA 298
           W         S GR  ++        +S L I      D+G Y C   N           
Sbjct: 343 WSHNAKPL--SGGRATVT--------DSGLVIKGVKNGDKGYYGCRATNEHGDKY----F 388

Query: 299 FVYVRV 304
              V+V
Sbjct: 389 ETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 88.4 bits (219), Expect = 6e-20
 Identities = 52/308 (16%), Positives = 93/308 (30%), Gaps = 46/308 (14%)

Query: 30  DTEIMEGAPINISCILTIFEQ---VKWQLNGRNINQSSVDSGFAATA-NLT------EDN 79
           +    E  P  + CI+   +Q     W+ +G++ N    ++       +L        D 
Sbjct: 15  EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDE 74

Query: 80  FKYSIHEAILESGYVQS---SLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTS--P 134
             Y    A   +G   S   S     + A       +   K      PF L C + +  P
Sbjct: 75  GHYQC-FAETPAGVASSRVISFRKTYLIASP----AKTHEKTPIEGRPFQLDCVLPNAYP 129

Query: 135 PPGDDYQIVWYKGNKSI---TEATELSGRLTQSKDS----ITIRKTTVDDAGQYSCRLID 187
            P     I W K         + T+   R+T   D       + K  V D  +Y C   +
Sbjct: 130 KP----LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN 185

Query: 188 PKSTNTTPLAQADFDVIMKPTAKLV---------ETLTVIEGEKLRLECLVVGSPPPTVE 238
                   L + +   + K  +            + +    G+   + C+   +P     
Sbjct: 186 AAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPN 245

Query: 239 W-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE 297
           + + G D     + RI         T+   L        D G Y C  +N   +  + + 
Sbjct: 246 YFKNGKDVNGNPEDRITRHNR----TSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK-HS 300

Query: 298 AFVYVRVK 305
             + V   
Sbjct: 301 LKLTVVSA 308

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 86.1 bits (213), Expect = 4e-19
 Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 12/207 (5%)

Query: 113 EPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
           +P   +F    P  L+C +  +       +  W K  KS     E +  L + + S+   
Sbjct: 12  QPAEVLFRENNPTVLECIIEGNDQG---VKYSWKKDGKSYNW-QEHNAALRKDEGSLVFL 67

Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV- 230
           +    D G Y C    P    ++ +       ++   AK     T IEG   +L+C++  
Sbjct: 68  RPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT-HEKTPIEGRPFQLDCVLPN 126

Query: 231 GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR---GNYYCHGNN 287
             P P + W+        +               +  L     T  D      Y C   N
Sbjct: 127 AYPKPLITWKKRLSGADPNADVTDFDRR-ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKN 185

Query: 288 VAT-RNSQPNEAFVYVRVKGKSFGYDR 313
            A        E  +    K  S     
Sbjct: 186 AAVDEEVVLVEYEIKGVTKDNSGYKGE 212

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 91.8 bits (227), Expect = 2e-21
 Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 21/194 (10%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
              L C +          I WYK N+ +        + +QS  ++ I    ++D+G+Y C
Sbjct: 145 GIDLYCGILYAKH--YNNITWYKNNQELIID---GTKYSQSGQNLIIHNPELEDSGRYDC 199

Query: 184 RLIDP---KSTNTTPLAQADFDVIMKPTAK----LVETLTVIEGEKLRLECLVVGSP--- 233
            +         +          VI     +    L   + V  GE   + C  V +    
Sbjct: 200 YVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLV 259

Query: 234 -PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY-CHGNNVATR 291
               ++W   +         +        G   + L  +  T    GN Y C G+N    
Sbjct: 260 DDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD 319

Query: 292 NSQPNEAFVYVRVK 305
            +        V ++
Sbjct: 320 KT----LTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 71.8 bits (175), Expect = 2e-14
 Identities = 25/191 (13%), Positives = 47/191 (24%), Gaps = 24/191 (12%)

Query: 124 PFTLKCNVTSPPP------GDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTV-D 176
           PF+ KC               D  + W K  K+                 + I   T  D
Sbjct: 46  PFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTR-----RPLNRRVKNGDLWIANYTSND 100

Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVV-GSPP 234
              +Y C +                 +   P+       L   +   + L C ++     
Sbjct: 101 SHRRYLCTVTT--KNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHY 158

Query: 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
             + W            +  + +  +   +   L I    + D G Y C+ +    R   
Sbjct: 159 NNITWYKN--------NQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKN 210

Query: 295 PNEAFVYVRVK 305
                    + 
Sbjct: 211 DIVVSRCKILT 221

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 14/107 (13%), Positives = 27/107 (25%), Gaps = 7/107 (6%)

Query: 203 VIMKPTAKLVE--TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF-RSQGRIKLSEHP 259
             + P+             GE    +C  +     +  +   ++       G+ +   + 
Sbjct: 25  KWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR 84

Query: 260 EKGTANSVLQIDEATMADRGNYY-CHGNNVATRNSQPNEAFVYVRVK 305
                N  L I   T  D    Y C          Q      ++R  
Sbjct: 85  R--VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQ-GIVRSHIRKP 128

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 89.1 bits (221), Expect = 3e-21
 Identities = 45/208 (21%), Positives = 66/208 (31%), Gaps = 32/208 (15%)

Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSI-TEATELSGRLTQSKD--- 166
             P   +     P TL C     P P     I WYKG + + T+  +             
Sbjct: 14  EHPSDLIVSKGEPATLNCKAEGRPTP----TIEWYKGGERVETDKDDPRSHRMLLPSGSL 69

Query: 167 ---SITIRKTTVDDAGQYSC----RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIE 219
               I   + +  D G Y C     L +  S + +       D   +        + V  
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP----SDVMVAV 125

Query: 220 GEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278
           GE   +EC    G P PT+ W+           RI +            L I     +D 
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG--------KLMITYTRKSDA 177

Query: 279 GNYYCHGNNVA-TRNSQPNEAFVYVRVK 305
           G Y C G N+   R S+   A + V  +
Sbjct: 178 GKYVCVGTNMVGERESEV--AELTVLER 203

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWR-----IGNDTYFRSQGRIKLSEHPEKGTANSV 267
             L V +GE   L C   G P PT+EW      +  D       R+ L   P        
Sbjct: 17  SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL---PSGSLFFLR 73

Query: 268 LQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGKSF 309
           +     +  D G Y C   N      S   +A + V +    F
Sbjct: 74  IVHGRKSRPDEGVYVCVARNYLGEAVSH--DASLEVAILRDDF 114

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 89.6 bits (222), Expect = 3e-21
 Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 26/183 (14%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQY 181
               +C    +P P     I W K  +       + G   + +  S+ +      D G Y
Sbjct: 32  TVRFRCPAAGNPTP----SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNY 87

Query: 182 SCRLIDPKSTNTTPLAQADF--DVIMKPTAKLV------ETLTVIEGEKLRLECLVVGSP 233
           +C        N     +  +  DV+ +   + +         T + G  +   C V    
Sbjct: 88  TCV-----VENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA 142

Query: 234 PPTVEWR---IGNDTYFRSQGRIKLSEHPEKGT----ANSVLQIDEATMADRGNYYCHGN 286
            P ++W      N +     G   ++      +    A+  L++   +  D G Y C   
Sbjct: 143 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT 202

Query: 287 NVA 289
           N  
Sbjct: 203 NFI 205

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 60.3 bits (146), Expect = 7e-11
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
              +P     + L V     +R  C   G+P P++ W   N   FR + RI   +   + 
Sbjct: 13  YWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRHQ- 70

Query: 263 TANSVLQIDEATMADRGNYYCHGNNVA 289
                L ++    +DRGNY C   N  
Sbjct: 71  --QWSLVMESVVPSDRGNYTCVVENKF 95

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 91.5 bits (227), Expect = 5e-21
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 16/193 (8%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKD-SITIRKTTVDDA-GQ 180
              +KC + S        + W+    ++     E  G+        + IR+   +D    
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 179

Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAK--------LVETLTVIEGEKLRLECLVVGS 232
           Y CR     +  T   A     VI +P +         + + L ++    + L C   G 
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGF 239

Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN 292
           P P+  W    +   R Q    +  +      +  L I +A + D G Y C  NN     
Sbjct: 240 PAPSFRWYKFIEGTTRKQA---VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE 296

Query: 293 SQPNEAFVYVRVK 305
           S   E  + V   
Sbjct: 297 SV--ETVLTVTAP 307

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 90.4 bits (224), Expect = 1e-20
 Identities = 55/302 (18%), Positives = 93/302 (30%), Gaps = 53/302 (17%)

Query: 30  DTEIMEGAPINISCILTIFE-----QVKWQLNGR--NINQSSVDSGFAATAN-------- 74
              ++ G    I C++  F       V W  +        +  D  +    +        
Sbjct: 112 KEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREV 171

Query: 75  LTEDNF-KYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV-------PFT 126
             ED +  Y        +G  + S    R+          P+      +          +
Sbjct: 172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTIS 231

Query: 127 LKCNVT-SPPPGDDYQIVWYKGNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
           L C     P P       WYK  +  T  +A  L+ R+ Q   ++ I+   V+D+G+Y C
Sbjct: 232 LLCPAQGFPAP----SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 287

Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPPTVEWRIG 242
                 ++      +    V    +AK+   T TV  G      C   G+P  TV W   
Sbjct: 288 V---VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK- 343

Query: 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
           +                      SVL+I+     D+G Y C   N          A   +
Sbjct: 344 DGKAIGHS--------------ESVLRIESVKKEDKGMYQCFVRNDRESAE----ASAEL 385

Query: 303 RV 304
           ++
Sbjct: 386 KL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 70.7 bits (173), Expect = 7e-14
 Identities = 31/213 (14%), Positives = 61/213 (28%), Gaps = 28/213 (13%)

Query: 114 PKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK 172
                F       ++C  + +P P    +I+W + + +         R   S   +    
Sbjct: 11  TNRIDFSNSTGAEIECKASGNPMP----EIIWIRSDGTAVGDVP-GLRQISSDGKLVFPP 65

Query: 173 TTVDD------AGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLE 226
              +D      A  Y+C   +   +  +        V     A  V    VI G    ++
Sbjct: 66  FRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIK 124

Query: 227 CLV---VGSPPPTVEWRIGNDTYF----RSQGRIKLSEHPEKGTANSVLQIDEATMAD-R 278
           CL+   V      V W    +  +       G+  +         +  L I E    D  
Sbjct: 125 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP-------SGELHIREVGPEDGY 177

Query: 279 GNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY 311
            +Y C   +  T  ++ +     + +       
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSS 210

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 86.5 bits (214), Expect = 1e-20
 Identities = 33/181 (18%), Positives = 55/181 (30%), Gaps = 34/181 (18%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           TL CN  +       +  W+                 ++  S+ I     +D+G+Y C+ 
Sbjct: 23  TLTCNGNNFFEVSSTK--WFHNGS----------LSEETNSSLNIVNAKFEDSGEYKCQ- 69

Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
                           +V             V+EG+ L L C    +             
Sbjct: 70  ----HQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVY------KVI 119

Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRV 304
           Y++    +K          N  + I  AT+ D G YYC G        S+P    + + V
Sbjct: 120 YYKDGEALKYW------YENHNISITNATVEDSGTYYCTGKVWQLDYESEP----LNITV 169

Query: 305 K 305
            
Sbjct: 170 I 170

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 22/95 (23%)

Query: 216 TVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
            + +GE + L C         + +W       F +    +          NS L I  A 
Sbjct: 15  RIFKGENVTLTCNGNNFFEVSSTKW-------FHNGSLSE--------ETNSSLNIVNAK 59

Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
             D G Y C       +    +E  VY+ V     
Sbjct: 60  FEDSGEYKC-----QHQQVNESEP-VYLEVFSDWL 88

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 87.4 bits (216), Expect = 1e-20
 Identities = 30/191 (15%), Positives = 50/191 (26%), Gaps = 37/191 (19%)

Query: 126 TLKCNVTSPP-PGDDYQIVWYKGNKSITEATE------------------------LSGR 160
            L C  T  P       I W           +                         S  
Sbjct: 19  YLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSND 78

Query: 161 LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIE 219
           +     SI +    + D G Y C++            +    V++KP+        +   
Sbjct: 79  VKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN---KKFLLTVLVKPSGTRCFVDGSEEI 135

Query: 220 GEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278
           G   +L+C    GS P   EW+       +      +         + V+ +  A+    
Sbjct: 136 GNDFKLKCEPKEGSLPLQFEWQ-------KLSDSQTMPTPWLAEMTSPVISVKNASSEYS 188

Query: 279 GNYYCHGNNVA 289
           G Y C   N  
Sbjct: 189 GTYSCTVQNRV 199

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 29/119 (24%)

Query: 213 ETLTVIEGEKLRLECLVVGSP----PPTVEW--------------------RIGNDTYFR 248
           + +   +GE   L C    SP    P  +EW                    +I ++ Y  
Sbjct: 8   QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67

Query: 249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
            +GR+  + +  K + ++ + +    ++D G Y C                  + V  K
Sbjct: 68  LKGRVHFTSNDVK-SGDASINVTNLQLSDIGTYQCKVKKAP----GVANKKFLLTVLVK 121

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 88.9 bits (220), Expect = 1e-20
 Identities = 31/189 (16%), Positives = 57/189 (30%), Gaps = 13/189 (6%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
              L C +T P       +   +           +           IRK  V D+  Y C
Sbjct: 106 EAVLPCLITDPAL--KDSVSLMREGGRQV--LRKTVYFFSPWRGFIIRKAKVLDSNTYVC 161

Query: 184 R-LIDPKSTNTTPLAQADFDVIMKPTAKLVE--TLTVIEGEKLRLECLVVGSPPPTVEWR 240
           + +++ + + +T +      V  +P    +E   L  I GE  ++ C    +        
Sbjct: 162 KTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVIL 221

Query: 241 IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFV 300
              DT           ++  K      L ++     D G Y C  +N     +    A +
Sbjct: 222 KRGDTKLEIPLNSDFQDNYYKK--VRALSLNAVDFQDAGIYSCVASNDVGTRT----ATM 275

Query: 301 YVRVKGKSF 309
             +V     
Sbjct: 276 NFQVVESHH 284

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 77.3 bits (190), Expect = 2e-16
 Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 28/189 (14%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
             TL+C            + W    +   T   E  G       ++T R  T  + G Y 
Sbjct: 21  TVTLRCVSNGS-------VEWDGPISPYWTLDPESPGS------TLTTRNATFKNTGTYR 67

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPT--AKLVETLTVIEGEKLRLECLVVGSPP-PTVEW 239
           C  ++     +         V         L + +TV+EG++  L CL+       +V  
Sbjct: 68  CTELEDPMAGS---TTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSL 124

Query: 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAF 299
                     +     S             I +A + D   Y C       R S     +
Sbjct: 125 MREGGRQVLRKTVYFFSP-------WRGFIIRKAKVLDSNTYVCKTMV-NGRESTSTGIW 176

Query: 300 VYVRVKGKS 308
           + V      
Sbjct: 177 LKVNRVHPE 185

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 16/97 (16%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
             L V  GE + L C+  G    +VEW      Y+               +  S L    
Sbjct: 12  PELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPE----------SPGSTLTTRN 57

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
           AT  + G Y C         S      +YV+    S+
Sbjct: 58  ATFKNTGTYRCTELEDPMAGST--TIHLYVKDPAHSW 92

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 49.2 bits (117), Expect = 6e-07
 Identities = 20/168 (11%), Positives = 52/168 (30%), Gaps = 15/168 (8%)

Query: 30  DTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLT------EDNF 80
           +  ++EG    + C++T   + + V     G           F+             D+ 
Sbjct: 98  EVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSN 157

Query: 81  KYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV--PFTLKCNVTSPPPGD 138
            Y     +       + +++           I+ +             + C+ T+     
Sbjct: 158 TYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEV-- 215

Query: 139 DYQIVWYKGNK--SITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
            + ++  +G+    I   ++      +   ++++      DAG YSC 
Sbjct: 216 GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV 263

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 86.8 bits (214), Expect = 2e-20
 Identities = 37/216 (17%), Positives = 62/216 (28%), Gaps = 18/216 (8%)

Query: 97  SLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE 156
           S FI  ++   G   I       + +    + C  +         +             +
Sbjct: 4   SPFIASVSDQHGVVYIT----ENKNK-TVVIPCLGSISNL----NVSLCARYPEKRFVPD 54

Query: 157 LSGRLTQSKDSITIRKTTVDDAGQYSCR-LIDPKSTNTTP-LAQADFDVIMKPTAKLVET 214
            +     SK   TI    +  AG   C   I+ +S  +   +       I          
Sbjct: 55  GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHG 114

Query: 215 LTVIEGEKLRLECLVVGSPPPTVE--WRIGNDTYFRS---QGRIKLSEHPEKGTANSVLQ 269
           + +  GEKL L C         ++  W   +  +         +K     E     S L 
Sbjct: 115 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 174

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           ID  T +D+G Y C  ++           FV V   
Sbjct: 175 IDGVTRSDQGLYTCAASSGLMTKKN--STFVRVHED 208

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 88.7 bits (220), Expect = 2e-20
 Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 24/188 (12%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAGQY 181
           TL C VT  P P     + WY+  K I  A  L  R+ + K     + I   T DDA  Y
Sbjct: 23  TLVCKVTGHPKP----IVKWYRQGKEII-ADGLKYRIQEFKGGYHQLIIASVTDDDATVY 77

Query: 182 SCRLIDPKSTNTTP--LAQADFDVIMKP-TAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
             R  +   + +    L       I  P T + +  +  + GE + ++    G P P + 
Sbjct: 78  QVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVIT 137

Query: 239 WRIGNDTYFRSQGRIKLSEHPE---KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP 295
           W+ G D        I  + H +     +  S++  +     D G Y     N    + + 
Sbjct: 138 WQKGQD-------LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK- 189

Query: 296 NEAFVYVR 303
               + V 
Sbjct: 190 -TVELDVA 196

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 60.9 bits (148), Expect = 7e-11
 Identities = 21/91 (23%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           L V       L C V G P P V+W            + ++ E          L I   T
Sbjct: 14  LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG---YHQLIIASVT 70

Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
             D   Y     N     S    A + V V 
Sbjct: 71  DDDATVYQVRATNQGGSVS--GTASLEVEVP 99

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 27/173 (15%), Positives = 47/173 (27%), Gaps = 22/173 (12%)

Query: 30  DTEIMEGAPINISCILTIFEQ--VKWQLNGRNINQSSVDSGFAATANLT----------E 77
           +  +   +   + C +T   +  VKW   G+ I    +                     +
Sbjct: 13  NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDD 72

Query: 78  DNFKYSIHEAILESGYVQSSLFIPRMNAITGNYD-IEPKYKVFEYRV--PFTLKCNVT-S 133
           D   Y +  A  + G V  +  +        +                   ++K   +  
Sbjct: 73  DATVYQV-RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 131

Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSIT-IRKTTVDDAGQYSCRL 185
           P P     I W KG   I         +T+S  S+         DAG Y    
Sbjct: 132 PDP----VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 88.3 bits (219), Expect = 3e-20
 Identities = 54/302 (17%), Positives = 98/302 (32%), Gaps = 48/302 (15%)

Query: 30  DTEIMEGAPINISCILTIFE-----QVKWQLNGRNINQSS-----VDSGFAAT-----AN 74
           D   + G   +  C           +V W   G+ +N         D    A        
Sbjct: 15  DQIGVSGGVASFVCQ---ATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR 71

Query: 75  LTEDNFKYSIHEAILESGYVQSSLFI-----PRMNAITGNYDIEPKYKVFEYRVPFTLKC 129
              D   Y    A    G +     +      ++ +   N D+ P+ KV E     T+ C
Sbjct: 72  TPRDENVYEC-VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLC 130

Query: 130 NVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSCRLID 187
             + +P P    +I W+K    +  +   +GR+ Q +  ++ I  +   D G+Y C   +
Sbjct: 131 AASGNPDP----EITWFKDFLPVDPSAS-NGRIKQLRSGALQIESSEETDQGKYECVATN 185

Query: 188 PKSTNTTPLAQADFDVIMKPT--AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
                 +  A     V       + L  +  ++ G  + + C+ VGSP P V+W      
Sbjct: 186 SAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWM-QGAE 244

Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
               +  + +              ++   + D  NY C   +         EA   + VK
Sbjct: 245 DLTPEDDMPVGR----------NVLELTDVKDSANYTCVAMSSLGV----IEAVAQITVK 290

Query: 306 GK 307
             
Sbjct: 291 SL 292

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           +    + G      C   G P P V W         SQ    +       +A +VL+I  
Sbjct: 14  KDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVNSQRFETIE---FDESAGAVLRIQP 69

Query: 273 A-TMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
             T  D   Y C   N     +    A + V  +
Sbjct: 70  LRTPRDENVYECVAQNSVGEIT--VHAKLTVLRE 101

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 85.7 bits (212), Expect = 4e-20
 Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 34/182 (18%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           TLKC     P     Q  W+     I+              S  I   TVDD+G+Y C+ 
Sbjct: 26  TLKCQGAYSPEDQSTQ--WFHNESLISS----------QASSYFIDAATVDDSGEYRCQ- 72

Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
               +  +T       +V +             E + + L C    +            T
Sbjct: 73  ----TQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALH------KVT 122

Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR-NSQPNEAFVYVRV 304
           Y ++    K   H      NS   I +AT+ D G+Y+C G   +   +S+     V + +
Sbjct: 123 YLQNGKGRKYFHH------NSDFYIPKATLKDSGSYFCRGLVGSKNVSSET----VQITI 172

Query: 305 KG 306
             
Sbjct: 173 TQ 174

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 22/90 (24%)

Query: 216 TVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
            V+E + + L+C    SP   + +W       F ++  I         +  S   ID AT
Sbjct: 18  RVLEKDSVTLKCQGAYSPEDQSTQW-------FHNESLIS--------SQASSYFIDAAT 62

Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
           + D G Y C      T+ S  ++  V + V
Sbjct: 63  VDDSGEYRC-----QTQLSTLSDP-VQLEV 86

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 85.0 bits (210), Expect = 4e-20
 Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 49/198 (24%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-----------------RLTQSKDSI 168
            L C  +        Q  W   N+      + S                     Q    +
Sbjct: 14  ELTCTASQKKS---IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70

Query: 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECL 228
            I+   ++D+  Y C + D K      +    F +             +++G+ L L   
Sbjct: 71  IIKNLKIEDSDTYICEVEDQKEEVQLLV----FGLTANSDT------HLLQGQSLTLTLE 120

Query: 229 VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
                 P+V+ R               S   +       L + +  + D G + C     
Sbjct: 121 SPPGSSPSVQCR---------------SPRGKNIQGGKTLSVSQLELQDSGTWTC----T 161

Query: 289 ATRNSQPNEAFVYVRVKG 306
             +N +  E  + + V  
Sbjct: 162 VLQNQKKVEFKIDIVVLA 179

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 12/91 (13%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK----------- 261
           + +   +G+ + L C           W+  N           L++ P K           
Sbjct: 3   KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 62

Query: 262 -GTANSVLQIDEATMADRGNYYCHGNNVATR 291
               N  L I    + D   Y C   +    
Sbjct: 63  WDQGNFPLIIKNLKIEDSDTYICEVEDQKEE 93

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 85.4 bits (211), Expect = 5e-20
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 30/191 (15%)

Query: 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAG 179
           +V F ++    S       ++ +    K I E  +    + ++     + + K   +D G
Sbjct: 19  QVRFWMQAEKLSGNA----KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 74

Query: 180 QYSCRLIDPKSTNTT-----------PLAQADF---DVIMKPTAKLVETL--TVIEGEKL 223
            Y+ +L D K+TN +              +A+F   + I K     VE L   V     +
Sbjct: 75  TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV 134

Query: 224 RLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282
            L+C V      T + W             I + E  +       L I E +  D G Y 
Sbjct: 135 LLKCKVANIKKETHIVWYKDERE-------ISVDEKHDFKDGICTLLITEFSKKDAGIYE 187

Query: 283 CHGNNVATRNS 293
               +   ++ 
Sbjct: 188 VILKDDRGKDK 198

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 4/82 (4%)

Query: 213 ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
             + ++E  ++R        S    V +   N+       + K+      G     + ++
Sbjct: 10  LAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPKYKMHIDRNTGIIE--MFME 66

Query: 272 EATMADRGNYYCHGNNVATRNS 293
           +    D G Y     +    N 
Sbjct: 67  KLQDEDEGTYTFQLQDGKATNH 88

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 38/196 (19%)

Query: 30  DTEIMEGAPINISCILTIFE---QVKWQLNGRNINQSS------VDSGFAAT---ANLT- 76
             EI+E   +             +V +  N + I +          +          L  
Sbjct: 11  AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 70

Query: 77  EDNFKYSIHEAILESGYVQSSL--FIPRMNAITGNYDIEPKYKVFEYRVPF--------- 125
           ED   Y+  +         S++         +    + + +  + +    F         
Sbjct: 71  EDEGTYTF-QLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT 129

Query: 126 -----TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDA 178
                 LKC V +     +  IVWYK  + I+       +        ++ I + +  DA
Sbjct: 130 GECNVLLKCKVANIKK--ETHIVWYKDEREISV----DEKHDFKDGICTLLITEFSKKDA 183

Query: 179 GQYSCRLIDPKSTNTT 194
           G Y   L D +  + +
Sbjct: 184 GIYEVILKDDRGKDKS 199

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 84.5 bits (209), Expect = 6e-20
 Identities = 37/181 (20%), Positives = 62/181 (34%), Gaps = 34/181 (18%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           TLKC     P  +  Q  W+     I+              S  I   TV+D+G+Y C+ 
Sbjct: 26  TLKCQGAYSPEDNSTQ--WFHNESLISS----------QASSYFIDAATVNDSGEYRCQ- 72

Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
               +  +T       +V +             E + + L C    +            T
Sbjct: 73  ----TNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALH------KVT 122

Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR-NSQPNEAFVYVRV 304
           Y ++    K   H      NS   I +AT+ D G+Y+C G   +   +S+     V + +
Sbjct: 123 YLQNGKDRKYFHH------NSDFHIPKATLKDSGSYFCRGLVGSKNVSSET----VNITI 172

Query: 305 K 305
            
Sbjct: 173 T 173

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 16/73 (21%)

Query: 216 TVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           +V+E + + L+C    SP   + +W       F ++  I         +  S   ID AT
Sbjct: 18  SVLEKDSVTLKCQGAYSPEDNSTQW-------FHNESLIS--------SQASSYFIDAAT 62

Query: 275 MADRGNYYCHGNN 287
           + D G Y C  N 
Sbjct: 63  VNDSGEYRCQTNL 75

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 88.3 bits (219), Expect = 7e-20
 Identities = 38/206 (18%), Positives = 63/206 (30%), Gaps = 25/206 (12%)

Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEAT---ELSGRLTQSKD- 166
           I+ K +        TL C+    P P    +I W +     T       L GR+      
Sbjct: 5   IQLKNETTYENGQVTLVCDAEGEPIP----EITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 167 ---SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEK 222
              S+ I+   + D+G+Y C      S           D+   P            EG  
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCE---AASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNP 117

Query: 223 LRLECLVVGSPPPTVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
           + + C V  +PP ++ WR        ++   +K            +L+I   +  D G Y
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR----KMILEIAPTSDNDFGRY 173

Query: 282 YCHGNNVATRNSQPNEAFVYVRVKGK 307
            C   N              + +   
Sbjct: 174 NCTATNHIGTRF----QEYILALADV 195

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR------IGNDTYFRSQGRIKLSEHP 259
           +P    ++  T  E  ++ L C   G P P + W+         +      GRI++    
Sbjct: 1   QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 260 EKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
              +    L I +  ++D G Y C   +    +      ++ +   
Sbjct: 61  GSSS----LHIKDVKLSDSGRYDCEAASRIGGHQ--KSMYLDIEYA 100

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 85.0 bits (210), Expect = 9e-20
 Identities = 33/183 (18%), Positives = 52/183 (28%), Gaps = 26/183 (14%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATE--------LSGRLTQSKDSITIRKTT 174
           P  L C  +    P    ++ W       T               R+T     IT +  T
Sbjct: 21  PVKLSCAYSGFSSP----RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76

Query: 175 VDDAGQYSCRLIDPKSTNTTPLAQADF----DVIMKPT-AKLVETLTVIEGEKLRLECLV 229
            +D G Y+C       +     +  +      V++ P+   +    +   G +  L C  
Sbjct: 77  REDTGTYTCM-----VSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE 131

Query: 230 V-GSPPPTVEWRIGND--TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN 286
             GSPP    W              R   +           L  D  + +D G Y C   
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191

Query: 287 NVA 289
           N  
Sbjct: 192 NGY 194

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 66.5 bits (162), Expect = 4e-13
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 3/96 (3%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-RIGND--TYFRSQGRIKLSEHPEKGTANSVLQ 269
             + + E   ++L C   G   P VEW     D         +I  S         + + 
Sbjct: 12  PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGIT 71

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
               T  D G Y C  +     +    +  + V V 
Sbjct: 72  FKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP 107

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 87.8 bits (217), Expect = 1e-19
 Identities = 23/191 (12%), Positives = 47/191 (24%), Gaps = 28/191 (14%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL------SGRLTQSKDSITIRKTTVDD 177
           P  ++C          + + W   NK++ E          + R         +     +D
Sbjct: 244 PLWIRCKAVHVNH--GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301

Query: 178 AGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPP 234
            G Y+C      S+       A   ++ K         E   + + E+          P 
Sbjct: 302 TGYYTCS-----SSKHPS-QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ 355

Query: 235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
               W     +              +       +          G Y  H  N   + ++
Sbjct: 356 IRCTWTFSRKS---------FPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK 406

Query: 295 PNEAFVYVRVK 305
                + +R  
Sbjct: 407 --MFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 77.4 bits (190), Expect = 5e-16
 Identities = 26/166 (15%), Positives = 41/166 (24%), Gaps = 16/166 (9%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             TL+  V +P        +W   + S+           +   S+ I K T   AG+Y  
Sbjct: 65  SITLQVLVDAPGNI---SCLWVFKHSSLNCQ-PHFDLQNRGVVSMVILKMTETQAGEYLL 120

Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
            +    +  T         +       L          +  L C+    P P VEW    
Sbjct: 121 FIQSEATNYT---ILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEW---- 173

Query: 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
                        E            + E       +  C   N  
Sbjct: 174 --VLCDSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNEL 214

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 77.0 bits (189), Expect = 6e-16
 Identities = 39/311 (12%), Positives = 77/311 (24%), Gaps = 74/311 (23%)

Query: 30  DTEIMEGAPINISCILTIFE--QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA 87
             E+   A I +  ++         W     ++N               + +F       
Sbjct: 57  AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLN--------------CQPHFDLQNR-- 100

Query: 88  ILESGYVQSSLFIPRMNAI-TGNY---------DIEPKYKVFEYRVPF------------ 125
                    S+ I +M     G Y         +    + V                   
Sbjct: 101 ------GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKME 154

Query: 126 ---TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQY 181
               L C     P P     + W   +       E S  +   K+   + +         
Sbjct: 155 NQDALVCISESVPEP----IVEWVLCDSQGESCKEESPAVV-KKEEKVLHE---LFGTDI 206

Query: 182 SCRLIDPKSTNT--TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVE 238
            C      + N       +     + +     +  L +  GE L + C  V  +    + 
Sbjct: 207 RCC-----ARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLT 261

Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTA--NSVLQIDEATMADRGNYYCHGNNVATRNSQPN 296
           W +  +         ++S +    T        +      D G Y C  +   +++    
Sbjct: 262 WEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---- 316

Query: 297 EAFVYVRVKGK 307
            A V +  KG 
Sbjct: 317 -ALVTIVEKGF 326

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 73.2 bits (179), Expect = 1e-14
 Identities = 20/136 (14%), Positives = 35/136 (25%), Gaps = 14/136 (10%)

Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV 229
              ++V  +  Y      P+        Q+        T      + V     + L+ LV
Sbjct: 19  NNDSSVGKSSSYPMVSESPEDLGCALRPQS------SGTVYEAAAVEVDVSASITLQVLV 72

Query: 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
                 +  W     +    Q    L            + I + T    G Y     + A
Sbjct: 73  DAPGNISCLWVF-KHSSLNCQPHFDLQNRG-----VVSMVILKMTETQAGEYLLFIQSEA 126

Query: 290 TRNSQPNEAFVYVRVK 305
           T  +      V +R  
Sbjct: 127 TNYTI--LFTVSIRNT 140

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 86.3 bits (213), Expect = 2e-19
 Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 26/202 (12%)

Query: 126 TLKCNVTSPPPGDD--YQIVWYKGNKSITEATELSGRLTQSKD----------------- 166
           TL C +  P        Q+ W +  +S + A     +     +                 
Sbjct: 19  TLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRN 78

Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLR 224
            S+ +    V+D G Y+C  +     + +        V+ KP      + + +       
Sbjct: 79  ASLRMFGLRVEDEGNYTCLFVTFPQGSRS--VDIWLRVLAKPQNTAEVQKVQLTGEPVPM 136

Query: 225 LECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
             C+   G PP  + W                       T  S+  +  ++  D  N  C
Sbjct: 137 ARCVSTGGRPPAQITWHSDLGGM--PNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTC 194

Query: 284 HGNNVATRNSQPNEAFVYVRVK 305
              + +    Q     + V   
Sbjct: 195 KVEHESFEKPQLLTVNLTVYYP 216

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 81.7 bits (201), Expect = 6e-18
 Identities = 35/303 (11%), Positives = 73/303 (24%), Gaps = 67/303 (22%)

Query: 30  DTEIMEGAPINISCILT-------IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKY 82
                 G  + + C L           Q+ W  +G + + +        +     ++ + 
Sbjct: 9   QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSY---SESKRL 65

Query: 83  SIHEAILESGYVQSSLFIPR-------------MNAITGNYD--------IEPKYKVFEY 121
               A L +    +SL +               +    G+           +P+      
Sbjct: 66  EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 125

Query: 122 RV------PFTLKCNVTS--PPPGDDYQIVWYKGNKSITEATE---LSGRLTQSKDSITI 170
           +V          +C  T   PP     QI W+     +   ++                +
Sbjct: 126 KVQLTGEPVPMARCVSTGGRPPA----QITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181

Query: 171 RKTTVDDAGQYSCR-----LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRL 225
             ++  D    +C+        P+            +V +       +    +   +  L
Sbjct: 182 VPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY----DNNWYLGQNEATL 237

Query: 226 ECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
            C    +P PT   W               L          + L I            C+
Sbjct: 238 TCDARSNPEPTGYNWSTTMGP---------LPPFAV--AQGAQLLIRPVDKPINTTLICN 286

Query: 285 GNN 287
             N
Sbjct: 287 VTN 289

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 25/121 (20%)

Query: 202 DVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT-----VEW------------RIGND 244
           DV+++        +    G+ + L C +            + W                 
Sbjct: 1   DVVVQAP----TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQG 56

Query: 245 TYFRSQGRIKLSEHPEKGTA-NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
             +    R++           N+ L++    + D GNY C      T         +++R
Sbjct: 57  PSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCL---FVTFPQGSRSVDIWLR 113

Query: 304 V 304
           V
Sbjct: 114 V 114

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 82.3 bits (203), Expect = 8e-19
 Identities = 37/202 (18%), Positives = 62/202 (30%), Gaps = 33/202 (16%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEA--------TELSGRLTQSKDSITIRKTT 174
              L C  +    P    ++ W     S T             + R+T S   IT    T
Sbjct: 18  SIKLTCTYSGFSSP----RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73

Query: 175 VDDAGQYSCRLIDPKSTNTTPLAQADFD----VIMKPTAKLV-ETLTVIEGEKLRLECLV 229
             D G+Y+C       +        +      V++ P+   +    +V  G +  L C  
Sbjct: 74  RKDNGEYTCM-----VSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSE 128

Query: 230 V-GSPPPTVEW-----RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
             GSPP    W      +      +++  +  S   +    +  L  D  T  D G YYC
Sbjct: 129 HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID--PKSGDLIFDPVTAFDSGEYYC 186

Query: 284 HGNNVATRNSQPNEAFVYVRVK 305
              N     +       ++   
Sbjct: 187 QAQNGY--GTAMRSEAAHMDAV 206

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 66.5 bits (162), Expect = 3e-13
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT---YFRSQGRIKLSEHPEKGTANSVLQ 269
             + V E E ++L C   G   P VEW+    +         +I          ++S + 
Sbjct: 9   SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGIT 68

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
               T  D G Y C  +    +N    E  +++ V
Sbjct: 69  FSSVTRKDNGEYTCMVSEEGGQNYG--EVSIHLTV 101

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 84.8 bits (209), Expect = 9e-19
 Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 49/198 (24%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR-----------------LTQSKDSI 168
            L C  +        Q  W   N+      + S                     Q    +
Sbjct: 13  ELTCTASQKKS---IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69

Query: 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECL 228
            I+   ++D+  Y C + D K           F +             +++G+ L L   
Sbjct: 70  IIKNLKIEDSDTYICEVEDQKEEVQLL----VFGLTANSDT------HLLQGQSLTLTLE 119

Query: 229 VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV 288
                 P+V+ R         +G+               L + +  + D G + C     
Sbjct: 120 SPPGSSPSVQCR-------SPRGKNIQG--------GKTLSVSQLELQDSGTWTC----T 160

Query: 289 ATRNSQPNEAFVYVRVKG 306
             +N +  E  + + V  
Sbjct: 161 VLQNQKKVEFKIDIVVLA 178

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 62.1 bits (150), Expect = 4e-11
 Identities = 23/196 (11%), Positives = 51/196 (26%), Gaps = 40/196 (20%)

Query: 126 TLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
           TL         P     +                G+  Q   ++++ +  + D+G ++C 
Sbjct: 115 TLTLESPPGSSP----SVQCRSPR----------GKNIQGGKTLSVSQLELQDSGTWTCT 160

Query: 185 LIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGE-------------------KLRL 225
           +            +   D+++    K    +   EGE                   +L  
Sbjct: 161 V-----LQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW 215

Query: 226 ECLVVGSPPPTVEWRIGNDT-YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
           +     S    + + + N     +   +    +  +K   +  L       A  GN    
Sbjct: 216 QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLA 275

Query: 285 GNNVATRNSQPNEAFV 300
                 +  Q     V
Sbjct: 276 LEAKTGKLHQEVNLVV 291

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 58.7 bits (141), Expect = 6e-10
 Identities = 28/281 (9%), Positives = 72/281 (25%), Gaps = 47/281 (16%)

Query: 24  KITYFGDTEIMEGAPINISCILTIFEQ--VKWQLNGRNINQSS----------VDSG-FA 70
            +T   DT +++G  + ++          V+ +       Q             DSG + 
Sbjct: 99  GLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWT 158

Query: 71  ATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCN 130
            T    +   ++ I   +L      S ++      +  ++ +    +          +  
Sbjct: 159 CTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAE 218

Query: 131 VTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVD----DAGQYSCRLI 186
             +                S+   T+        K  + +           +G  +  L 
Sbjct: 219 R-ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL- 276

Query: 187 DPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY 246
             ++       + +  V+                 +  L C V G   P +       + 
Sbjct: 277 --EAKTGKLHQEVNLVVM------------RATQLQKNLTCEVWGPTSPKLML-----SL 317

Query: 247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
                  K+S+           +       + G + C  ++
Sbjct: 318 KLENKEAKVSKR---------EKAVWVLNPEAGMWQCLLSD 349

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 12/91 (13%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWR-------IGNDTYFRSQGRIKLSEHPE----- 260
           + +   +G+ + L C           W+       +GN   F ++G  KL++  +     
Sbjct: 2   KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 61

Query: 261 KGTANSVLQIDEATMADRGNYYCHGNNVATR 291
               N  L I    + D   Y C   +    
Sbjct: 62  WDQGNFPLIIKNLKIEDSDTYICEVEDQKEE 92

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 83.6 bits (206), Expect = 1e-18
 Identities = 46/303 (15%), Positives = 80/303 (26%), Gaps = 46/303 (15%)

Query: 24  KITYFGDTEIM-EGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLT-EDNFK 81
            I       I+  G  ++++CI    + V+W                             
Sbjct: 14  SIHPAQSELIVEAGDTLSLTCIDP--DFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGT 71

Query: 82  YS--IHEAILESGYVQ----SSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPP 135
           Y+      +  S YV     + LF+                   E      ++C +T P 
Sbjct: 72  YTCSNSNGLTSSIYVFVRDPAKLFLV-----------GLPLFGKEDS-DALVRCPLTDPQ 119

Query: 136 PGDDYQIVWYKGN-KSITEATELSGRLTQSKDSITIRK-TTVDDAGQYSCRLIDPKSTNT 193
                Q    + + KS+             K  ITI+            C        + 
Sbjct: 120 V---SQYSLIECDGKSLPTDLTFV---PNPKAGITIKNVKRAYHRLCVRCAA----QRDG 169

Query: 194 TPLAQADFDVIMKPTAKLV-------ETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDT 245
           T L    F + ++   K +        +  + +G+   + C +          W   N  
Sbjct: 170 TWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ 229

Query: 246 YFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
                     S H           L I  A + D G + C+ NN     +      + V 
Sbjct: 230 PQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV--TTTLKVV 287

Query: 304 VKG 306
            KG
Sbjct: 288 EKG 290

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 81.6 bits (201), Expect = 2e-18
 Identities = 40/187 (21%), Positives = 61/187 (32%), Gaps = 28/187 (14%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGN---------------KSITEATELSGRLTQSKD-SIT 169
            L  +             WYKGN                        SGR     + S+ 
Sbjct: 18  LLLVHNLPLAL---GAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74

Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV 229
            +  T+ D G Y+  + D     T    +      +      V   TV E + + L C +
Sbjct: 75  FQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC-L 133

Query: 230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH-GNNV 288
                  ++W   N    +   R+ LS++      NS+L+ID     D G Y C   N V
Sbjct: 134 SNDIGANIQWLF-NSQSLQLTERMTLSQN------NSILRIDPIKREDAGEYQCEISNPV 186

Query: 289 ATRNSQP 295
           + R S  
Sbjct: 187 SVRRSNS 193

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 11/99 (11%)

Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDT---------YFRSQGRIKLSEHPEKGT--A 264
            V E   + L    +        W  GN T            S        +  +    +
Sbjct: 10  QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
           N  L     TM D G Y     +   R +Q    F   +
Sbjct: 70  NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQ 108

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 80.6 bits (199), Expect = 2e-18
 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 28/186 (15%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--SITIRKTTVDDAGQ 180
           P  L C+V     P     I W K    +    +L   +++      ++++     DAG+
Sbjct: 19  PVKLNCSVEGMEEP----DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 74

Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSPPP-TVE 238
           Y C++ D   T  +        V   P   +  + L V      +L C  VG P P T+ 
Sbjct: 75  YWCQVEDGGETEIS--QPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIV 132

Query: 239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA-TRNSQPNE 297
           W  G         +I          + SVL +   T      + C  +N+    +S    
Sbjct: 133 WWRGTT-------KI-----GGPAPSPSVLNVTGVT--QSTMFSCEAHNLKGLASS--RT 176

Query: 298 AFVYVR 303
           A V+++
Sbjct: 177 ATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
             LTV +G+ ++L C V G   P ++W + G       Q  I +SE    G     L + 
Sbjct: 10  VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF----LSLK 65

Query: 272 EATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRV 304
               +D G Y+C   +   T  SQP   ++ V  
Sbjct: 66  SVERSDAGRYWCQVEDGGETEISQP--VWLTVEG 97

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 83.4 bits (205), Expect = 2e-18
 Identities = 39/208 (18%), Positives = 67/208 (32%), Gaps = 35/208 (16%)

Query: 124 PFTLKCNV--------TSPPPGDDYQIVWYKGNKSITEATELS-----GRLTQSKDSITI 170
           P  +KC +         S        ++WY   +       ++      R+++ KD +  
Sbjct: 24  PARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWF 83

Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA-----KLVETLTVIEGEKLRL 225
           R T ++D G Y+C L +    +         +V+ K +      KL      IE    R+
Sbjct: 84  RPTLLNDTGNYTCMLRNTTYCSK---VAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140

Query: 226 EC-----LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGN 280
            C         S  PT+ W           G  K+            L    A +++ GN
Sbjct: 141 TCPNVDGYFPSSVKPTITWY---------MGCYKIQNFNNVIPEGMNLSFLIALISNNGN 191

Query: 281 YYCHGNNVATRNSQPNEAFVYVRVKGKS 308
           Y C         +      + V+V G  
Sbjct: 192 YTCVVTYPENGRTFHLTRTLTVKVVGSP 219

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 78.0 bits (191), Expect = 2e-16
 Identities = 46/333 (13%), Positives = 90/333 (27%), Gaps = 57/333 (17%)

Query: 22  DGKITYFGDTEIMEGAPINISCILTIFE-------------QVKWQLNGRNINQSSVDSG 68
           D  +      ++ E  P  I C L                  + W    ++ +     + 
Sbjct: 8   DWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINF 67

Query: 69  FAATANLTEDNFKYSIHEAILE-SG-------------YVQSSLFIPRMNAITGNYDIEP 114
                 ++++         +L  +G              V   L + + ++   +    P
Sbjct: 68  RLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLP 127

Query: 115 KYKVFEYRVPFTLKCNVTS--PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK 172
            +K++       + C       P      I WY G   I         +     +++   
Sbjct: 128 VHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN----FNNVIPEGMNLSFLI 183

Query: 173 TTVDDAGQYSCRLIDPK-STNTTPLAQADFDVIMKPTAKLV---------ETLTVIEGEK 222
             + + G Y+C +  P+              V+  P   +                 GE+
Sbjct: 184 ALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE 243

Query: 223 LRLECLVV----GSPPPTVEWRIGNDTYFRSQGRIKLSE-----HPEKGTANSVLQIDEA 273
           L + C V           V W I           + ++E       E  T   +L I + 
Sbjct: 244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV 303

Query: 274 TMADRG-NYYCHGNNVATRNSQPNEAFVYVRVK 305
           T  D   +Y CH  +              V+ K
Sbjct: 304 TSEDLKRSYVCHARSAKGE----VAKAAKVKQK 332

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 50.3 bits (119), Expect = 4e-07
 Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 13/118 (11%)

Query: 213 ETLTVIEGEKLRLEC-----------LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK 261
             + V E E  R++C               S   T+ W          +           
Sbjct: 15  RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRI 74

Query: 262 GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAIHQ 319
                VL      + D GNY C   N    +       + V  K   F       +H+
Sbjct: 75  SKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKV--AFPLEVVQKDSCFNSPMKLPVHK 130

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 78.9 bits (194), Expect = 1e-17
 Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 28/185 (15%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-----------------TQSKDSI 168
           TL         G + ++ W+K      +                         + +   +
Sbjct: 10  TLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFL 69

Query: 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLEC 227
            +    +   G Y CR+   ++  T    Q    V+   T  +  E     +   L + C
Sbjct: 70  VVTAANISHDGNYLCRMKLGETEVT---KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTC 126

Query: 228 LVVGSPPPTVEWRIGNDTY---FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
            V   P P V+W +          + G +      + G+  SV               C 
Sbjct: 127 TVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE---KDGSL-SVAVDLSLPKPWHLPVTCV 182

Query: 285 GNNVA 289
           G N  
Sbjct: 183 GKNDK 187

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 17/106 (16%)

Query: 215 LTVIEGEKLRLECL---VVGSPPPTVEW-RIGNDTYFRSQGRIKL----SEHPEKGTA-- 264
           +T   GE++ L      V   P   V W ++G        GR+       E P +G    
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 265 -----NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
                   L +  A ++  GNY C      T  ++  +  + V   
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTK--QEHLSVVKP 104

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 79.2 bits (194), Expect = 2e-17
 Identities = 28/216 (12%), Positives = 46/216 (21%), Gaps = 52/216 (24%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD------------------- 166
            L C+           I W KG           G      +                   
Sbjct: 21  ELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLG 80

Query: 167 ----------SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA------- 209
                     ++ +      D G+Y C++          L      + +           
Sbjct: 81  RASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHV 140

Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIG--------NDTYFRSQGRIKLSEHPEK 261
              E + V EG  + + C         V W  G          TY     + +       
Sbjct: 141 STAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFS 200

Query: 262 G--------TANSVLQIDEATMADRGNYYCHGNNVA 289
                    +    L I  A + D G  +C      
Sbjct: 201 SEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQ 236

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 20/125 (16%), Positives = 35/125 (28%), Gaps = 30/125 (24%)

Query: 213 ETLTVIEGEKLRLECLVV---GSPPPTVEWR-------------------------IGND 244
             + V  G  + L C       + PP + W                          + +D
Sbjct: 10  TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69

Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH-GNNVATRNSQPNEAFVYVR 303
           +Y  S G            A + L++      D G Y+C             +   V ++
Sbjct: 70  SYKESFGDFLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128

Query: 304 VKGKS 308
           V G +
Sbjct: 129 VTGHT 133

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 76.1 bits (187), Expect = 9e-17
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 31/179 (17%)

Query: 124 PFTLKCNV--TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---------SITIRK 172
             TL+C +     PP    ++ W +  + +  A     ++   +D          + I  
Sbjct: 19  TGTLRCQLQVQGEPP----EVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITS 74

Query: 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVG 231
             + D GQY C +     T  +        +   P   +  E  TV       L C   G
Sbjct: 75  LQLSDTGQYQCLVFLGHQTFVS--QPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQG 132

Query: 232 SPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
            P P  + W          Q  + L+  P  G     L +         ++ C  +N  
Sbjct: 133 PPEPVDLLWL---------QDAVPLATAPGHGP-QRSLHVPGLN--KTSSFSCEAHNAK 179

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 213 ETLTVIEGEKLRLECLV-VGSPPPTVEWR-----IGNDTYFRSQGRIKLSEHPEKGTANS 266
             +T   G    L C + V   PP V W      +      ++Q  +   +  +     S
Sbjct: 10  GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLG-EDEQDDWIVVS 68

Query: 267 VLQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVK 305
            L+I    ++D G Y C       T  SQP   +V +   
Sbjct: 69  QLRITSLQLSDTGQYQCLVFLGHQTFVSQP--GYVGLEGL 106

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 77.5 bits (190), Expect = 2e-16
 Identities = 38/303 (12%), Positives = 73/303 (24%), Gaps = 65/303 (21%)

Query: 30  DTEIMEGAPINISCILT------IFEQVKWQLNGRNINQS----------SVDSGFAATA 73
                 G  + + C            QV WQ +     Q+          SV + +    
Sbjct: 23  SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERV 82

Query: 74  NLTED---NFKYSIHEAILE-----------------SGYVQSSLFIPRMNAITGNYDIE 113
                   +    +    LE                    +  ++     N I G   + 
Sbjct: 83  EFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVL 142

Query: 114 PKYKVFEYRVPFTLKCNVT--SPPPGDDYQIVWYKGNKSITEATEL--SGRLTQSKDSIT 169
              K  + +      C      PP      + W    K   E  E+              
Sbjct: 143 RAKKGQDDK-VLVATCTSANGKPPS----VVSWETRLKGEAEYQEIRNPNGTVTVISRYR 197

Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLV--ETLTVIEGEKLRL 225
           +  +        +C +            +     +V  +P   +   +    ++   ++L
Sbjct: 198 LVPSREAHQQSLACIV-----NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKL 252

Query: 226 ECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
            C    +PP T   W   N +         L +  E     ++        +  G Y C 
Sbjct: 253 TCKADANPPATEYHWTTLNGS---------LPKGVE-AQNRTLFFKGPINYSLAGTYICE 302

Query: 285 GNN 287
             N
Sbjct: 303 ATN 305

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 77.5 bits (190), Expect = 3e-16
 Identities = 30/204 (14%), Positives = 60/204 (29%), Gaps = 31/204 (15%)

Query: 126 TLKCNVTSPPPGDD-YQIVWYKGNKSITEA-------------TELSGRLTQSKD----- 166
            L C+  +P P     Q+ W K      +                   R+   +      
Sbjct: 33  VLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDG 92

Query: 167 SITIRKTTVDDAGQYSCRLI----DPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEK 222
           +I + +  ++D G Y C         + +       A     ++ T  ++      + + 
Sbjct: 93  TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152

Query: 223 LRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY 281
           L   C    G PP  V W          Q   ++       T  S  ++  +  A + + 
Sbjct: 153 LVATCTSANGKPPSVVSWETRLKGEAEYQ---EIRNPNGTVTVISRYRLVPSREAHQQSL 209

Query: 282 YCHGNNVATRNSQPNEAFVYVRVK 305
            C  N    R  +     + + V+
Sbjct: 210 ACIVNYHMDRFKES----LTLNVQ 229

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 20/109 (18%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPP----TVEW-------RIGNDTYFRSQGRIKLSEHPEK 261
           +++    G  + L C      P      V W       +     Y  S G   L+ + E+
Sbjct: 22  DSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRER 81

Query: 262 ------GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
                    +  +++    + D G Y C     AT  +   E+ + + V
Sbjct: 82  VEFLRPSFTDGTIRLSRLELEDEGVYICE---FATFPTGNRESQLNLTV 127

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 76.4 bits (187), Expect = 3e-16
 Identities = 25/206 (12%), Positives = 58/206 (28%), Gaps = 51/206 (24%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEAT--------------------ELSGRLTQSK 165
            + C V         ++ W         +                      L G    + 
Sbjct: 24  LMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHND 83

Query: 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRL 225
            S+ ++     D G Y+C +   +  N + + +   ++ + P       L V  G+  ++
Sbjct: 84  GSLLLQDVQKADEGIYTCEI---RLKNESMVMKKPVELWVLPEEP--RDLRVRVGDTTQM 138

Query: 226 ECLVVGSPPP---TVEWR---------------------IGNDTYFRSQGRIKLSEHPEK 261
            C +  +       V W                          +  R + R+ L+    +
Sbjct: 139 RCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISR 198

Query: 262 GTANSVLQIDEATMADRGNYYCHGNN 287
              +  +++     +D+G Y C    
Sbjct: 199 N--DGSIKLQTVKESDQGIYTCSIYV 222

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 49.5 bits (117), Expect = 5e-07
 Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 24/111 (21%)

Query: 214 TLTVIEGEKLRLECLV---VGSPPPTVEWRIGNDTYF-----------------RSQGRI 253
            L V  GE + + C+V          V+W    D                    R Q R 
Sbjct: 14  QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRS 73

Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
            L         +  L + +   AD G Y C             +  V + V
Sbjct: 74  HLVGDTFHN--DGSLLLQDVQKADEGIYTCEIRLKNESMVM--KKPVELWV 120

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 30/235 (12%), Positives = 70/235 (29%), Gaps = 56/235 (23%)

Query: 30  DTEIMEGAPINISCILTIFE-----QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSI 84
              +  G  + + C++   E     +V W  +    + S     + +  ++    F+   
Sbjct: 14  QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRS 73

Query: 85  HEAILESGYVQSSLFIPRMNAI-TGNY----------------------DIEPKYKVFEY 121
           H    ++ +   SL +  +     G Y                        EP+      
Sbjct: 74  HLV-GDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRV 132

Query: 122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA------------------------TEL 157
                ++C++ S       ++ W   + S TE                          +L
Sbjct: 133 GDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192

Query: 158 SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV 212
           +G ++++  SI ++     D G Y+C +   K  +          V+     + +
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESR---KTIVLHVVQDEFQRTI 244

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 12/98 (12%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ-----GRIKL-SEHPEKGTANS 266
           E  TV  G  + LEC         +E    +     +       R  L  E    G   +
Sbjct: 10  EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLG--KA 67

Query: 267 VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
           +  I    + D G Y C    +    +  +  ++ V+V
Sbjct: 68  LFHIPSVQVRDSGQYRC----LVICGAAWDYKYLTVKV 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 74.4 bits (182), Expect = 4e-15
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 18/171 (10%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
              L+C V          Q  W       +     SG L     ++    T+  +    +
Sbjct: 175 DVLLRCQVEGRGLE----QAGWILTELEQSATVMKSGGLPSLGLTL-ANVTSDLNRKNVT 229

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVET-LTVIEGEKLRLECLVVGSPPPTVEWRI 241
           C      + N   + +A+  V +  +        T +E     +   V G P P++ W  
Sbjct: 230 CW-----AEN--DVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLF 282

Query: 242 GNDTYFRSQGRIK---LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
            N +       I    L     +   +  L++++ T  + GNY     N  
Sbjct: 283 -NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 1e-08
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 8/78 (10%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
              +V  G+ + L C V G       W +              +     G  +  L +  
Sbjct: 166 PNASVDVGDDVLLRCQVEGRGLEQAGWILTE-------LEQSATVMKSGGLPSLGLTLAN 218

Query: 273 ATM-ADRGNYYCHGNNVA 289
            T   +R N  C   N  
Sbjct: 219 VTSDLNRKNVTCWAENDV 236

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 75.0 bits (183), Expect = 4e-15
 Identities = 45/282 (15%), Positives = 81/282 (28%), Gaps = 39/282 (13%)

Query: 35  EGAPINISCILTIFEQVKWQLNGR-NINQSSVDSGFAAT-ANLT-EDNFKYSIHEAILES 91
           +GA      +++    V  +  GR N+     +  F    A L+ +D+ +Y     I   
Sbjct: 40  QGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSR 99

Query: 92  GYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-- 149
           G       +    +       + K    +     T+ C   +       +   YK     
Sbjct: 100 GLSFD---VSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENA--QKRKSLYKQIGLY 154

Query: 150 -------SITEATELSGRLTQSKD-------SITIRKTTVDDAGQYSCRLIDPKSTNTTP 195
                  S       +GR+            S+ I +  + DAGQY C+       + + 
Sbjct: 155 PVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA---GDDSNSN 211

Query: 196 LAQADFDVIMKP----------TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT 245
              AD  V+             +      L        +  C         V        
Sbjct: 212 KKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKR 271

Query: 246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
               +GRI L+   + G+    + I      D G Y C  ++
Sbjct: 272 APAFEGRILLNPQDKDGS--FSVVITGLRKEDAGRYLCGAHS 311

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 72.7 bits (177), Expect = 2e-14
 Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 32/200 (16%)

Query: 120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD------SITIRKT 173
           E        C  +S    D   +V     K    A    GR+  +        S+ I   
Sbjct: 244 EVANVAKFLCRQSSGENCD---VVVNTLGK---RAPAFEGRILLNPQDKDGSFSVVITGL 297

Query: 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV--ETLTVIEGEKLRLECLVVG 231
             +DAG+Y C              QA    + + +        +  + G  + + C    
Sbjct: 298 RKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNR 357

Query: 232 SPPPTVEW----------------RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
               ++++                        + +GR+ L E P  GT    + +++ T 
Sbjct: 358 KESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGT--FTVILNQLTS 415

Query: 276 ADRGNYYCHGNNVATRNSQP 295
            D G Y+C  N      +  
Sbjct: 416 RDAGFYWCLTNGDTLWRTTV 435

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 65.0 bits (157), Expect = 7e-12
 Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 34/217 (15%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSIT----------EATELSGRLTQSKD------S 167
             ++ C           +  W +                 +++ +GR   +         
Sbjct: 17  SVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFV 76

Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV-ETLTVIEGEKLRLE 226
           + I + + DD+G+Y C L      +         +V   P      +  TV  G  + + 
Sbjct: 77  VNIAQLSQDDSGRYKCGL---GINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTIN 133

Query: 227 CLVVGSPPPTVEWR-------------IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
           C          +                         GRI+L      G     + I++ 
Sbjct: 134 CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGT-GQLLFSVVINQL 192

Query: 274 TMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310
            ++D G Y C   + +  N +  +  V        + 
Sbjct: 193 RLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYE 229

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 35/207 (16%), Positives = 62/207 (29%), Gaps = 34/207 (16%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSI------------TEATELSGRLT------QSK 165
              + C              W     +                 +  GRL+         
Sbjct: 348 SVAVLCPYNRKES--KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGT 405

Query: 166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRL 225
            ++ + + T  DAG Y C         TT        +  +P  K+   +T + GE L++
Sbjct: 406 FTVILNQLTSRDAGFYWCLTNGDTLWRTT---VEIKIIEGEPNLKVPGNVTAVLGETLKV 462

Query: 226 ECLVV----GSPPPTVEW--RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
            C              +W          + +G  K   + ++ +    L ++  T AD G
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG 522

Query: 280 NYYCHGNNVATRNSQPNEAF-VYVRVK 305
            Y+C       +     E   VYV V+
Sbjct: 523 WYWC----GVKQGHFYGETAAVYVAVE 545

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 44.6 bits (104), Expect = 3e-05
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 18/98 (18%)

Query: 213 ETLTVIEGEKLRLECLV---VGSPPPTVEW-------------RIGNDTYFRSQGRIKLS 256
           E +  +EG  + + C       +      W                     +  GR  L+
Sbjct: 8   EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67

Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
             PE GT   V+ I + +  D G Y C     +   S 
Sbjct: 68  NFPENGTF--VVNIAQLSQDDSGRYKCGLGINSRGLSF 103

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 12/129 (9%)

Query: 124 PFTLKCNVTSPPPGDD-YQIVWYKGNKSITEATELS-GRLTQSKD------SITIRKTTV 175
              + C+        + Y   W         + +    +   + D      S+T+   T 
Sbjct: 459 TLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTR 518

Query: 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP 235
            D G Y C +        T         + +  A     +++ + +    E  V+ S   
Sbjct: 519 ADEGWYWCGVKQGHFYGETAAVYV---AVEERKAAGSRDVSLAKADAAPDEK-VLDSGFR 574

Query: 236 TVEWRIGND 244
            +E +   D
Sbjct: 575 EIENKAIQD 583

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 70.8 bits (173), Expect = 9e-15
 Identities = 34/186 (18%), Positives = 51/186 (27%), Gaps = 22/186 (11%)

Query: 126 TLKCNV-TSPPPGDDYQIVWYKGNKSITE--------ATELSGRLTQSKD---SITIRKT 173
           TL C    S       +I W K  K +            E   R         SI I   
Sbjct: 13  TLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILAL 72

Query: 174 TVDDAGQYSCRLIDPKSTNTTPLAQA--DFDVIMKPTAKLVETLTVIEGEKLRLECLVVG 231
              D G Y C ++  +         A     V        +    +      R+ C   G
Sbjct: 73  RPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSG 132

Query: 232 -SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNV 288
             P P + W    +    +     +S+ PE      +S L      M    ++ C     
Sbjct: 133 GFPEPHLSWLENGEEL--NAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYG 187

Query: 289 ATRNSQ 294
             R +Q
Sbjct: 188 HLRVNQ 193

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 71.3 bits (174), Expect = 1e-14
 Identities = 22/198 (11%), Positives = 54/198 (27%), Gaps = 30/198 (15%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSIT-------------EATELSGRLTQSKD------ 166
            L C++      +  ++ W   +                 ++    GR +  +D      
Sbjct: 23  DLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGK 82

Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRL 225
            ++ I   T  D+G+Y C   D        +      +           +   +   + L
Sbjct: 83  AALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDL----HVDVKGYKDGGIHL 138

Query: 226 ECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
           EC   G  P P ++W         +     +++        + + +     +      C 
Sbjct: 139 ECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIM---RGSSGEGVSCT 195

Query: 285 GNNVATRNSQPNEAFVYV 302
             +          A + +
Sbjct: 196 IRSSLL--GLEKTASISI 211

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 73.0 bits (178), Expect = 1e-14
 Identities = 37/287 (12%), Positives = 80/287 (27%), Gaps = 24/287 (8%)

Query: 30  DTEIMEGAPINISCILT----IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH 85
              +  G  + ++C  +    +   ++  L  + +     +      +N+ ED+ +  + 
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDS-QP-MC 65

Query: 86  EAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWY 145
            +    G   +  F+          ++ P           TL+C V    P  +  +V  
Sbjct: 66  YSNCPDGQSTAKTFLTVYWTPE-RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLL 124

Query: 146 KGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR-------LIDPKSTNTTPLAQ 198
           +G K +     +         + T+          +SCR              NT+   Q
Sbjct: 125 RGEKELKREPAVGEPAEV---TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQ 181

Query: 199 ADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPP-PTVEWRIGNDTYFRSQGRIKLSE 257
               V+     +LV    +    +  + C + G  P    +       +     +     
Sbjct: 182 LQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV------HLALGDQRLNPT 235

Query: 258 HPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
                 + S       T  D G        +    SQ     V +  
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 68.7 bits (167), Expect = 3e-13
 Identities = 36/293 (12%), Positives = 75/293 (25%), Gaps = 62/293 (21%)

Query: 33  IMEGAPINISCILT-----IFEQVKWQLNGRNINQSSVDSGFAATANLT-----EDNFKY 82
           +       + C L         QV   L  + +N +      + +A  +     ED    
Sbjct: 200 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQ 259

Query: 83  SIH-EAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV----PFTLKCNVTSPPPG 137
            +    IL +   ++   +      T      P   + +  V      T+KC        
Sbjct: 260 RLTCAVILGNQSQETLQTV------TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAK- 312

Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR-LIDPKSTNTTPL 196
               +              +  +    +  + ++ T  D+   +SC   ++         
Sbjct: 313 ----VTLNG----------VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 358

Query: 197 AQADFDVIMKP---TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI 253
              +  V+  P           T  E  +    C   G+P P ++               
Sbjct: 359 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK------------ 406

Query: 254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
                 +      + +    T    G Y C   +     ++     V V V  
Sbjct: 407 ------DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTRE----VTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 30/204 (14%), Positives = 49/204 (24%), Gaps = 34/204 (16%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
           + P   +        + C+ +   P     +                  L    +     
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQPM---LLGIETPLPK-------KELLLPGNNRKVYE 53

Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVET--LTVIEGEKLRLECLV 229
            + V +  Q  C    P   +T   A+    V   P    +         G+ L L C V
Sbjct: 54  LSNVQEDSQPMCYSNCPDGQST---AKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV 110

Query: 230 VGSPPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC--- 283
            G  P    TV    G         +    E      A     +         N+ C   
Sbjct: 111 EGGAPRANLTVVLLRG--------EKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162

Query: 284 -----HGNNVATRNSQPNEAFVYV 302
                 G  +    S P +   +V
Sbjct: 163 LDLRPQGLELFENTSAPYQLQTFV 186

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 70.4 bits (172), Expect = 2e-14
 Identities = 32/199 (16%), Positives = 58/199 (29%), Gaps = 31/199 (15%)

Query: 126 TLKCNVTSPPPGD--DYQIVWYKGNKSI-----------TEATELSGRLTQSKD------ 166
           T++C        D     + W   +K+I            + +    R    KD      
Sbjct: 20  TIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGN 79

Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVET-LTVIEGEKLR 224
            ++ I    + DAG Y C +    +       +    V            +      +  
Sbjct: 80  AALQITDVKLQDAGVYRCMISYGGADY----KRITVKVNAPYNKINQRILVVDPVTSEHE 135

Query: 225 LECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYC 283
           L C   G P   V W   +      +     S+  EK     S L+I+  T      +YC
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTN---EIFYC 192

Query: 284 HGNNVATRNSQPNEAFVYV 302
               +     + + A + +
Sbjct: 193 TFRRLDP--EENHTAELVI 209

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 66.7 bits (162), Expect = 5e-14
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 201 FDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR-----IGNDTYFRSQGRIKL 255
           +DV++ P+      + +  GEKL L C         +++        +         +K 
Sbjct: 8   YDVVLSPS----HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 63

Query: 256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
               E     S L ID  T +D+G Y C  ++             +VRV  K F
Sbjct: 64  QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK----NSTFVRVHEKPF 113

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 12/91 (13%)

Query: 125 FTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD--------SITIRKTTVD 176
             L C   +          W   +        ++  L             ++TI   T  
Sbjct: 26  LVLNCTARTELNVG-IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 84

Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKP 207
           D G Y+C       T           V  KP
Sbjct: 85  DQGLYTCAASSGLMTKK---NSTFVRVHEKP 112

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 70.1 bits (171), Expect = 5e-14
 Identities = 35/290 (12%), Positives = 74/290 (25%), Gaps = 62/290 (21%)

Query: 35  EGAPINISCILT-----IFEQVKWQLNGRNINQSSVDSGFAATANLT-------EDNFKY 82
                 + C L         QV   L  + +N +      + +A  +       E   + 
Sbjct: 17  VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 76

Query: 83  SIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV----PFTLKCNVTSPPPGD 138
           +    IL +   ++         +T      P   + +  V      T+KC         
Sbjct: 77  TC-AVILGNQSQETLQ------TVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRA--- 126

Query: 139 DYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR-LIDPKSTNTTPLA 197
             ++                 +    +  + ++ T  D+   +SC   ++          
Sbjct: 127 --KVTLNGV----------PAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 174

Query: 198 QADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIK 254
             +  V+  P           T  E  +    C   G+P P ++                
Sbjct: 175 TRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK------------- 221

Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
                +      + +    T    G Y C   +     ++  E  V V  
Sbjct: 222 -----DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTR--EVTVNVLS 264

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 68.5 bits (167), Expect = 5e-14
 Identities = 28/186 (15%), Positives = 47/186 (25%), Gaps = 33/186 (17%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEAT--------------ELSGRLTQSKD-SITI 170
           TL      P       I W     S+                  +   RL  ++  S+ +
Sbjct: 17  TLPLEF--PAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74

Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV 230
               ++D G Y  ++    S   +         +          L      +L L C V 
Sbjct: 75  SNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVE 134

Query: 231 -GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
                 +  W    +T   SQ  + +S  P                    +Y C   N  
Sbjct: 135 DADDNVSFRWEALGNT-LSSQPNLTVSWDPRIS--------------SEQDYTCIAENAV 179

Query: 290 TRNSQP 295
           +  S  
Sbjct: 180 SNLSFS 185

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 68.6 bits (167), Expect = 7e-14
 Identities = 27/206 (13%), Positives = 64/206 (31%), Gaps = 24/206 (11%)

Query: 111 DIEPKYKVF-EYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI 168
           +  P+ +   +     +L C+ T    P       W     S       +     +  ++
Sbjct: 4   ETTPESRYLAQIGDSVSLTCSTTGCESP----FFSWRTQIDSPLNGKVTNEG---TTSTL 56

Query: 169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL---TVIEGEKLRL 225
           T+   +  +   Y C      +T  +   +    V +    K  E      +  G+ + +
Sbjct: 57  TMNPVSFGNEHSYLCT-----ATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITV 111

Query: 226 ECLVVGSPP---PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282
           +C V    P     ++     D   +SQ  ++ ++     T +  +              
Sbjct: 112 KCSVADVYPFDRLEIDLL-KGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLV 170

Query: 283 CH-GNNVATRNSQP--NEAFVYVRVK 305
           C    ++   +S P   +A   ++V 
Sbjct: 171 CRAKLHIDEMDSVPTVRQAVKELQVY 196

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 61.3 bits (148), Expect = 2e-11
 Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 12/97 (12%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
                  G+ + L C   G   P   WR   D+         L+         S L ++ 
Sbjct: 9   SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS--------PLNGKVTNEGTTSTLTMNP 60

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
            +  +  +Y C         S+  E  + V +     
Sbjct: 61  VSFGNEHSYLCTATC----ESRKLEKGIQVEIYSFPK 93

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 65.8 bits (161), Expect = 8e-14
 Identities = 22/95 (23%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E   V  GE + L   V G+ P T  W        +    +K+          S L I  
Sbjct: 15  EDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVENSEN----GSKLTILA 69

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
           A     G Y     N          A V + V  K
Sbjct: 70  ARQEHCGCYTLLVENKLGSRQ----AQVNLTVVDK 100

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
              L   VT + P        W K  K I E+  +    +++   +TI     +  G Y+
Sbjct: 24  SVELFGKVTGTQPI----TCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYT 79

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTA 209
             + +   +     AQ +  V+ KP  
Sbjct: 80  LLVENKLGSRQ---AQVNLTVVDKPDP 103

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 69.5 bits (169), Expect = 1e-13
 Identities = 45/298 (15%), Positives = 89/298 (29%), Gaps = 43/298 (14%)

Query: 30  DTEIMEGAPINISCILT------IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYS 83
               + G    ++  +             W  + +    ++  +        +E+   Y 
Sbjct: 11  KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--ATLTVADATSENAGSYK 68

Query: 84  IHEAILESGYVQSSLFIPRMNAITGNYDI-EPKYKVFEYRVPFTLKCNV-----TSPPPG 137
           +               +  M       +I EP++     +    L   V      +P   
Sbjct: 69  V-TVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADN 127

Query: 138 DDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA 197
            +    W KG   I    ++           TI++ T D  G Y+ ++      +    +
Sbjct: 128 YELHYSWSKGEDVIDTTQDI-----------TIQEFTADKNGVYTVKVWGESEDSAASAS 176

Query: 198 QADFDVIMKPTAKLVETLTVIEGEKLRLECLV--------VGSPPPTVEW-----RIGND 244
                  M     +VE+ TV  G ++ L  +V         G P  T+++     R G  
Sbjct: 177 TKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQL 236

Query: 245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
           +       +  +      T +  L  + AT  D   ++C    VA    Q  +  V V
Sbjct: 237 SPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWC----VAKLYQQIEDETVEV 290

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
              TV       L C+  GSP PT+ WR           RIK  E       N VLQI  
Sbjct: 16  VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE-------NGVLQIRY 68

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
           A + D G Y C  +  +   +    A++ V+  G 
Sbjct: 69  AKLGDTGRYTCIASTPSGEATW--SAYIEVQEFGV 101

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQY 181
            F L C  T SP P     I+W K    ++       R+ Q ++  + IR   + D G+Y
Sbjct: 25  TFVLSCVATGSPVP----TILWRKDGVLVSTQ---DSRIKQLENGVLQIRYAKLGDTGRY 77

Query: 182 SCR 184
           +C 
Sbjct: 78  TCI 80

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 12/165 (7%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
           P TL+C         +Y+   Y+  K+    T +  +    K    I   T +  G+Y C
Sbjct: 21  PVTLRCQ--GGQETQEYR--LYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRC 75

Query: 184 RLIDP---KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR 240
                   +S ++ PL        +KPT     +  V  G  + L+C    +    +  +
Sbjct: 76  YYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFILCK 135

Query: 241 IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
            G D + +       S+   +G++ ++  +   + + R  Y C+ 
Sbjct: 136 EGEDEHPQCLN----SQPHARGSSRAIFSVGPVSPSRRWWYRCYA 176

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 66.8 bits (163), Expect = 3e-13
 Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 16/163 (9%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
            ++C   +       Q++  K +        L     ++     I     + AG+Y C+ 
Sbjct: 27  KIQCQ--AIREAYLTQLMIIKNSTYREIGRRLK-FWNETDPEFVIDHMDANKAGRYQCQY 83

Query: 186 IDP--KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW-RIG 242
                +   +  L      +  KP       L ++ GE + L C     P       + G
Sbjct: 84  RIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEG 143

Query: 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
             +  + Q           G   +   +    +   G Y C+G
Sbjct: 144 ELSLPQHQS----------GEHPANFSLGPVDLNVSGIYRCYG 176

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 172 KTTVDDAGQYSCRLIDP---KSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLEC 227
            +    +G      I+    ++ +      A+    +KP   K +  + V+EG   R +C
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63

Query: 228 LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH---PEKGTANSVLQIDEATMADRGNYYCH 284
            V G P P V W       F+    +K S H         N  L I E    D   Y C 
Sbjct: 64  KVEGYPDPEVMW-------FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116

Query: 285 GNNVA 289
             N  
Sbjct: 117 AVNSL 121

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 14/67 (20%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTVDD 177
                C V   P P    +++W+K +  + E    S       D     S+TI +   DD
Sbjct: 58  AARFDCKVEGYPDP----EVMWFKDDNPVKE----SRHFQIDYDEEGNCSLTISEVCGDD 109

Query: 178 AGQYSCR 184
             +Y+C+
Sbjct: 110 DAKYTCK 116

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 66.0 bits (161), Expect = 4e-13
 Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 12/162 (7%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           T+ C         +Y+    K         +      ++K   +I   T D AG+Y C  
Sbjct: 23  TIWCQ--GTLEAREYR--LDKEESPAPWDRQNP-LEPKNKARFSIPSMTEDYAGRYRCYY 77

Query: 186 IDPKSTNTT--PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN 243
             P   +    PL         KPT   + +  V  G+ + L C    S  P   + +  
Sbjct: 78  RSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLC---QSRSPMDTFLLCK 134

Query: 244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
           +        ++     ++  A     +   T    G Y C  
Sbjct: 135 ERAAHPLLCLRSEHGAQQHQAE--FPMSPVTSVHGGTYRCFS 174

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 63.2 bits (154), Expect = 5e-13
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
              T+       L+C   G P P + W     T+     R  + E          LQI  
Sbjct: 16  ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE-------QGTLQIKN 68

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
             ++D G Y C   + +   S    A + V   G
Sbjct: 69  LRISDTGTYTCVATSSSGETSW--SAVLDVTESG 100

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSC 183
            LKC  T  P P     I W K   +         R T  +  ++ I+   + D G Y+C
Sbjct: 27  LLKCKATGDPLP----VISWLKEGFTFPGR---DPRATIQEQGTLQIKNLRISDTGTYTC 79

Query: 184 R 184
            
Sbjct: 80  V 80

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 62.8 bits (153), Expect = 7e-13
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 14/93 (15%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E+  V  G+ L+L C +      ++ W   +        R +++           +++ +
Sbjct: 11  ESFLVHPGDLLQLRCRLRD-DVQSINWLR-DGVQLAESNRTRIT--------GEEVEVQD 60

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           +  AD G Y C    V +  S  +  +  V V 
Sbjct: 61  SVPADSGLYAC----VTSSPSGSDTTYFSVNVS 89

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 13/102 (12%)

Query: 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD 166
           +G+  +E +  +        L+C +          I W +    + E    S R   + +
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDVQ----SINWLRDGVQLAE----SNRTRITGE 54

Query: 167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT 208
            + ++ +   D+G Y+C      +++ +      F V +   
Sbjct: 55  EVEVQDSVPADSGLYACV-----TSSPSGSDTTYFSVNVSDA 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 62.7 bits (153), Expect = 7e-13
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
             + +  G    LE   +G+P PT  W +  D+       + +          + +    
Sbjct: 10  RKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPELLVDAKSS----TTSIFFPS 64

Query: 273 ATMADRGNYYCHGNNVA 289
           A  AD GNY     N  
Sbjct: 65  AKRADSGNYKLKVKNEL 81

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
              L+ +   +P P       W  G+     A EL      S  SI        D+G Y 
Sbjct: 19  THNLEVDFIGAPDP----TATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74

Query: 183 CRLIDPKSTNTTPLAQADFDVIMK 206
            ++      N     +A F+VI++
Sbjct: 75  LKV-----KNELGEDEAIFEVIVQ 93

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 64.9 bits (158), Expect = 7e-13
 Identities = 28/194 (14%), Positives = 50/194 (25%), Gaps = 37/194 (19%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT--------ELSGRLTQSKD-SITIRKTT 174
              L          D   I W K +     A         +        K+ ++ I+   
Sbjct: 16  DINLDIPSF-QMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74

Query: 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDV-IMKPTAKLVETLTVIEGEKLRLECLVVGSP 233
            DD   Y   + D K  N     +  FD+ I +  +K   +          L C V+   
Sbjct: 75  TDDQDIYKVSIYDTKGKNV---LEKIFDLKIQERVSKPKIS---WTCINTTLTCEVMNGT 128

Query: 234 PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
            P +                           +  +   + T +    + C   N  ++ S
Sbjct: 129 DPELNLYQDGKHL----------------KLSQRVITHKWTTSLSAKFKCTAGNKVSKES 172

Query: 294 QPNEAFVYVRVKGK 307
               +   V    K
Sbjct: 173 ----SVEPVSCPEK 182

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 63.2 bits (154), Expect = 7e-13
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
             V+EG+ ++LEC +   PPP + W+  N+    +  RI L    +  T    L I +  
Sbjct: 25  KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY---QDNTGRVTLLIKDVN 81

Query: 275 MADRGNYYCHGNNVA 289
             D G Y     N A
Sbjct: 82  KKDAGWYTVSAVNEA 96

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTVDD 177
              L+C ++  PPP    ++ W + N+ +      + R++  +D     ++ I+     D
Sbjct: 32  SVKLECQISAIPPP----KLFWKRNNEMVQFN---TDRISLYQDNTGRVTLLIKDVNKKD 84

Query: 178 AGQYSCR 184
           AG Y+  
Sbjct: 85  AGWYTVS 91

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 65.6 bits (159), Expect = 1e-12
 Identities = 29/192 (15%), Positives = 55/192 (28%), Gaps = 38/192 (19%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNK-------------------SITEATELSGRLTQSKD 166
            L C  T       Y + W+  ++                   ++ +    S        
Sbjct: 19  ILDCTPTGTHDH--YMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ 76

Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL-----TVIEG 220
             + + +  V D   Y C  +   +  T   A A  +V  KP A  V         + + 
Sbjct: 77  GRLVLAEAQVGDERDYVCV-VRAGAAGTAE-ATARLNVFAKPEATEVSPNKGTLSVMEDS 134

Query: 221 EKLRLECLVV-GSPPPTVEW-----RIGNDTYFRSQGRIKLSEHPEKG---TANSVLQID 271
            +    C    G+P P + W     R+        +G +      E     +  S L + 
Sbjct: 135 AQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLR 194

Query: 272 EATMADRGNYYC 283
                   +++C
Sbjct: 195 LRKDDRDASFHC 206

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 48.3 bits (114), Expect = 9e-07
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPT-VEWRIGND--------TYFRSQGRIKLSEHPEKGT 263
             + V+ G+ + L+C   G+     +EW + +         +       ++++ H  +G 
Sbjct: 8   PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGR 67

Query: 264 A-------NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
           +          L + EA + D  +Y C    V    +   EA   + V  K
Sbjct: 68  SPPYQLDSQGRLVLAEAQVGDERDYVCV---VRAGAAGTAEATARLNVFAK 115

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 64.9 bits (157), Expect = 1e-12
 Identities = 34/216 (15%), Positives = 59/216 (27%), Gaps = 48/216 (22%)

Query: 115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTT 174
           K   ++      L C+  +        I W+K  K I   TE   +         +    
Sbjct: 11  KVYDYQEDGSVLLTCDAEAKN------ITWFKDGKMIGFLTEDKKKWN-------LGSNA 57

Query: 175 VDDAGQYSCR----------------LIDPKSTNTTPLAQADFDVIMKPTAKLVETL--- 215
            D  G Y C+                  D    +      A  D   K  +   E +   
Sbjct: 58  KDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGI 117

Query: 216 ------TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQ 269
                   I G  + L C     P   + W+  ND         K     E    + +  
Sbjct: 118 TQTPYKVSISGTTVILTCPQ--YPGSEILWQH-NDKNIGGDEDDKNIGSDE----DHLSL 170

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
            + + +   G Y C+       +      ++Y+R +
Sbjct: 171 KEFSELEQSGYYVCYPRGSKPED---ANFYLYLRAR 203

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 30/160 (18%)

Query: 50  QVKWQLNGRNINQSSV-------------DSGF---AATANLTEDNFKY----SIHEAIL 89
            + W  +G+ I   +                G      + N ++    Y    S  +A  
Sbjct: 31  NITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKK 90

Query: 90  ESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRV-----PFTLKCNVTSPPPGDDYQIVW 144
           ++     +         +   +         Y+V        L C           +I+W
Sbjct: 91  DAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGS-----EILW 145

Query: 145 YKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
              +K+I    +     +          + ++ +G Y C 
Sbjct: 146 QHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 185

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
            ++TV EGE  R  C   G P PTV W         +  R +++    K T     +I  
Sbjct: 22  RSMTVYEGESARFSCDTDGEPVPTVTWL-RKGQVLSTSARHQVTTTKYKST----FEISS 76

Query: 273 ATMADRGNYYCHGNNVA 289
              +D GNY     N  
Sbjct: 77  VQASDEGNYSVVVENSE 93

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
              C+    P P     + W +  + ++ +       T+ K +  I      D G YS  
Sbjct: 33  RFSCDTDGEPVP----TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 63.1 bits (153), Expect = 1e-12
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--------TA 264
            +     G  + L C  VGSP P ++W            ++      ++          A
Sbjct: 29  LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHA 88

Query: 265 NSVLQIDEATMADRGNYYCHGNNVATRNS 293
            S + ID     D G Y C  +N   RN 
Sbjct: 89  ASTISIDTLVEEDTGTYECRASNDPDRNH 117

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 18/73 (24%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATEL-------------SGRLTQSKDSITIR 171
            L C    SP P    +I W+   +   +                 +     +  +I+I 
Sbjct: 40  ELHCEAVGSPVP----EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID 95

Query: 172 KTTVDDAGQYSCR 184
               +D G Y CR
Sbjct: 96  TLVEEDTGTYECR 108

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 61.0 bits (148), Expect = 3e-12
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 213 ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
            + +V  G  +   C     SP  T+ W   ++    S+              N +L I 
Sbjct: 18  RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF----------NGILTIR 67

Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
               +D G Y C G+N+   +     A ++V+V
Sbjct: 68  NVQPSDAGTYVCTGSNMFAMDQG--TATLHVQV 98

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 11/61 (18%)

Query: 126 TLKCNVTS--PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
           T  C   S  P       +VW + +        L  R       +TIR     DAG Y C
Sbjct: 29  TFICTAKSKSPAY----TLVWTRLHNGK-----LPSRAMDFNGILTIRNVQPSDAGTYVC 79

Query: 184 R 184
            
Sbjct: 80  T 80

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 60.8 bits (148), Expect = 4e-12
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           LTV EG+  R++C V G P P + W++ +    R     K+    E G     L I+  T
Sbjct: 19  LTVQEGKLCRMDCKVSGLPTPDLSWQL-DGKPVRPDSAHKM-LVRENG--VHSLIIEPVT 74

Query: 275 MADRGNYYCHGNNVA 289
             D G Y C   N A
Sbjct: 75  SRDAGIYTCIATNRA 89

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAG 179
              + C V+  P P     + W    K +   +    ++   ++   S+ I   T  DAG
Sbjct: 26  LCRMDCKVSGLPTP----DLSWQLDGKPVRPDSAH--KMLVRENGVHSLIIEPVTSRDAG 79

Query: 180 QYSCR 184
            Y+C 
Sbjct: 80  IYTCI 84

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 60.4 bits (147), Expect = 5e-12
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 21/100 (21%)

Query: 197 AQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWR-----IGNDTYFRS 249
           +     + + P  ++ L +   VIEG+   L+C V G+P P + W      I        
Sbjct: 2   SSGSSGMEVAPSFSSVLKDC-AVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE 60

Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
            G              + L I +A   D G Y C   N  
Sbjct: 61  AG-------------VAELHIQDALPEDHGTYTCLAENAL 87

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
            F L+C+V  +P P    +I W    + I  A             + I+    +D G Y+
Sbjct: 28  DFVLQCSVRGTPVP----RITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYT 80

Query: 183 CR 184
           C 
Sbjct: 81  CL 82

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 63.0 bits (153), Expect = 6e-12
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 11/164 (6%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             T++C         +Y+    K        T+ +    ++K   +I   T   AG+Y C
Sbjct: 21  SVTIRCQ--GTLEAQEYR--LVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRC 75

Query: 184 RLIDPKSTNTT--PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
               P   +    PL         KPT   + +  V  GE + L+C         +    
Sbjct: 76  YYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEE 135

Query: 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
           G+     +      S+    G   ++  +   T + R    C+G
Sbjct: 136 GDHKLSWTLD----SQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 62.3 bits (151), Expect = 6e-12
 Identities = 23/179 (12%), Positives = 50/179 (27%), Gaps = 31/179 (17%)

Query: 123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITE------ATELSGRLTQSKD-SITIRKTTV 175
           +   +          D  ++ W +G+  + E          SG      +  + I+  T 
Sbjct: 14  INLNIPN---FQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP 235
           DD+G Y+  +     T          D+ +     + + +   E     L C V+     
Sbjct: 71  DDSGTYNVTVYSTNGTRIL---NKALDLRILE--MVSKPMIYWECSNATLTCEVLEGTDV 125

Query: 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ 294
            ++   G                  +      +         R  + C   N  ++ S+
Sbjct: 126 ELKLYQGK--------------EHLRSLRQKTMSYQWTN--LRAPFKCKAVNRVSQESE 168

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 59.7 bits (145), Expect = 7e-12
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 15/84 (17%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
            +  ++ G  L L+C+ VGSP P  +W                   P       +  +  
Sbjct: 11  TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNE--------------LPLTHETKKLYMVPY 56

Query: 273 ATMADRGNYYCH-GNNVATRNSQP 295
             +  +G Y+CH  N+  +++S+ 
Sbjct: 57  VDLEHQGTYWCHVYNDRDSQDSKK 80

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 45.4 bits (108), Expect = 9e-07
 Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 14/62 (22%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
              L+C    SP P       W+K    +T  T         K    +    ++  G Y 
Sbjct: 20  TLVLQCVAVGSPIP----HYQWFKNELPLTHET---------KKLYMVPYVDLEHQGTYW 66

Query: 183 CR 184
           C 
Sbjct: 67  CH 68

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 60.5 bits (147), Expect = 9e-12
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 202 DVIMKPT----AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSE 257
           ++   P       L +T     GE+L L     G P P V W  G      S+  ++ S+
Sbjct: 17  EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSD 76

Query: 258 HPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
                  ++V  + +A  +D G Y         +++    A + +RV  K
Sbjct: 77  F------DTVFFVRQAARSDSGEYELSVQIENMKDT----ATIRIRVVEK 116

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYS 182
              L       P P    Q+VW KG   + + + +  R +       +R+    D+G+Y 
Sbjct: 41  QLNLVVPFQGKPRP----QVVWTKGGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYE 95

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKP 207
             +      +T   A     V+ K 
Sbjct: 96  LSVQIENMKDT---ATIRIRVVEKA 117

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 63.7 bits (154), Expect = 1e-11
 Identities = 23/168 (13%), Positives = 43/168 (25%), Gaps = 15/168 (8%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             TL+C V    P  +  +V  +G K +     +         + T+          +SC
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV---TTTVLVRRDHHGANFSC 159

Query: 184 RLIDPKSTNTTPLAQA-----DFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPT 236
           R           L +           + P    +LV    +    +  + C + G  P +
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219

Query: 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
                    +     +           + S       T  D G     
Sbjct: 220 EAQ-----VHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLT 262

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 31/199 (15%), Positives = 50/199 (25%), Gaps = 32/199 (16%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
           + P   +        + C+ +   P     I      K +              +     
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELLLPGN---------NRKVYE 53

Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL--TVIEGEKLRLECLV 229
            + V +  Q  C    P   +T   A+    V   P    +  L      G+ L L C V
Sbjct: 54  LSNVQEDSQPMCYSNCPDGQST---AKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV 110

Query: 230 VGSPPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGT-ANSVLQIDEATMADRGNYYCHG 285
            G  P    TV    G            L   P  G  A     +         N+ C  
Sbjct: 111 EGGAPRANLTVVLLRGEKE---------LKREPAVGEPAEVTTTVLVRRDHHGANFSCR- 160

Query: 286 NNVATRNSQPNEAFVYVRV 304
                 + +P    ++   
Sbjct: 161 ---TELDLRPQGLELFENT 176

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E +++ EG   R++  V G P P V W + N    +S    K+    +       L  + 
Sbjct: 13  ENMSIDEGRFCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMIVSEK---GLHSLIFEV 68

Query: 273 ATMADRGNYYCHGNNVA 289
              +D G Y C   N A
Sbjct: 69  VRASDAGAYACVAKNRA 85

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD---SITIRKTTVDDAG 179
              +   V+  P P     + WY   +++        ++  S+    S+        DAG
Sbjct: 22  FCRMDFKVSGLPAP----DVSWYLNGRTVQSDDLH--KMIVSEKGLHSLIFEVVRASDAG 75

Query: 180 QYSCR 184
            Y+C 
Sbjct: 76  AYACV 80

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA-NSVL 268
            +    +        +   V G+P P ++W   N         I    H    T  +  L
Sbjct: 6   TITFLESPTSDHHWCIPFTVKGNPKPALQWFY-NGAILNESKYICTKIHVTNHTEYHGCL 64

Query: 269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
           Q+D  T  + G+Y     N   +    +E  +     G 
Sbjct: 65  QLDNPTHMNNGDYTLIAKNEYGK----DEKQISAHFMGW 99

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 10/69 (14%)

Query: 122 RVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTV 175
              + +   V  +P P     + W+     + E+  +  ++  +        + +   T 
Sbjct: 16  DHHWCIPFTVKGNPKP----ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH 71

Query: 176 DDAGQYSCR 184
            + G Y+  
Sbjct: 72  MNNGDYTLI 80

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQ 269
           ++V         +  +E +V G+PPPT+ W   N    R    I +  + E   +   L 
Sbjct: 10  RVVSLEEPELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESKIIHVEYYQEGEISEGCLL 68

Query: 270 IDEATMADRGNYYCHGNNVA 289
            ++ T  + GNY     N  
Sbjct: 69  FNKPTHYNNGNYTLIAKNPL 88

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 120 EYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEA----TELSGRLTQSKDSITIRKTT 174
           E R+   ++  V  +PPP     + W    + + E+     E       S+  +   K T
Sbjct: 18  ELRLEHCIEFVVRGNPPP----TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPT 73

Query: 175 VDDAGQYSCR 184
             + G Y+  
Sbjct: 74  HYNNGNYTLI 83

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 37/187 (19%), Positives = 58/187 (31%), Gaps = 18/187 (9%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             T+ C         +YQ   +                  +K    I       AGQYSC
Sbjct: 23  QVTICCQ--GNYGAVEYQ--LHFEGSLFAVDRPKP-PERINKVKFYIPDMNSRMAGQYSC 77

Query: 184 RLIDP--KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
                   S  +  L     ++   PT  +     VI GEK+   C +  +    +  + 
Sbjct: 78  IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKE 137

Query: 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301
           G  ++ +             G   +   +   T A RG Y C G+      S P+E  V 
Sbjct: 138 GRSSHVQRG----------YGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEP-VK 186

Query: 302 VRVKGKS 308
           + V G  
Sbjct: 187 LLVTGDI 193

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 14/110 (12%)

Query: 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
             Y+       S+   P        +  P  +    +   EG ++ + C V   P  T+ 
Sbjct: 1   ATYAA-----ASSALVPRG----SHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATIS 51

Query: 239 WRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
           W   G      +   IK+        + S L++   +  D GNY C   N
Sbjct: 52  WFRDGQLLPSSNYSNIKI----YNTPSASYLEVTPDSENDFGNYNCTAVN 97

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS--ITIRKTTVDDAGQ 180
              + C V   P       I W++  + +  +   + ++  +  +  + +   + +D G 
Sbjct: 35  QVNITCEVFAYPSA----TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90

Query: 181 YSCRL 185
           Y+C  
Sbjct: 91  YNCTA 95

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E  T   GE + + C   G+PPP + W       F+    +           N  L I  
Sbjct: 18  ENQTTSIGESIEVSCTASGNPPPQIMW-------FKDNETLVEDSGIVLKDGNRNLTIRR 70

Query: 273 ATMADRGNYYCHGNNVA 289
               D G Y C   +V 
Sbjct: 71  VRKEDEGLYTCQACSVL 87

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 11/64 (17%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGR--LTQSKDSITIRKTTVDDAGQ 180
              + C  + +PPP    QI+W+K N+++ E         L     ++TIR+   +D G 
Sbjct: 27  SIEVSCTASGNPPP----QIMWFKDNETLVE----DSGIVLKDGNRNLTIRRVRKEDEGL 78

Query: 181 YSCR 184
           Y+C+
Sbjct: 79  YTCQ 82

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 61.4 bits (148), Expect = 3e-11
 Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 42/208 (20%)

Query: 126 TLKCNVTSPPPG----DDYQIVWYKGNKSITEA-------------------TELSGRLT 162
            + C+ + P           + W++  +    A                     L G + 
Sbjct: 19  LVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQ 78

Query: 163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTN-TTPLAQADFDVIMKPTAKLVETL-TVIEG 220
           +   S++I    ++D G Y  R+   +    +    + + +V        +  L  +  G
Sbjct: 79  KKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG 138

Query: 221 EKLRLECLVV----GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA 276
              RL C +       PP T  W               LS    + T +S L +      
Sbjct: 139 RPTRLSCSLPGSCEAGPPLTFSWTGNA-----------LSPLDPETTRSSELTLTPRPED 187

Query: 277 DRGNYYCHGNNVATRNSQPNEAFVYVRV 304
              N  C       + +   E  V + V
Sbjct: 188 HGTNLTCQMKRQGAQVTT--ERTVQLNV 213

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 25/118 (21%)

Query: 213 ETLTVIEGEKLRLECLV-------VGSPPPTVEW-RIGNDTYF---------------RS 249
           +++TV EG  + + C           SPP  V W R G   Y+                +
Sbjct: 8   KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67

Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
           QGR +L    +K   +  L I +A M D G+Y+              +  + + V   
Sbjct: 68  QGRFRLLGDVQKKNCS--LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL 123

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 59.1 bits (143), Expect = 3e-11
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 197 AQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRI-GNDTYFRSQGRIK 254
           +     V   P     +T   + GEK +++C +  +PPP  + W    N     + GR  
Sbjct: 5   SSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYT 64

Query: 255 LSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
           +     +    S L I     AD    Y C   N    ++      + ++ +G  
Sbjct: 65  VETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDT----EIIRLKEQGSE 115

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 14/108 (12%)

Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
           V+          +    G    L C  V      V W   +     S  ++++       
Sbjct: 9   VVFAKEQPAHREVQAEAGASATLSC-EVAQAQTEVTWY-KDGKKLSSSSKVRVEAVGCTR 66

Query: 263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG 310
                L + +A  A+ G Y C                  ++V G+ FG
Sbjct: 67  R----LVVQQAGQAEAGEYSCEAGGQQLS--------FRLQVAGQCFG 102

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 12/65 (18%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAG 179
             TL C V         ++ WYK  K ++     S ++          + +++    +AG
Sbjct: 28  SATLSCEVAQAQT----EVTWYKDGKKLSS----SSKVRVEAVGCTRRLVVQQAGQAEAG 79

Query: 180 QYSCR 184
           +YSC 
Sbjct: 80  EYSCE 84

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 14/92 (15%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E+L V  G+ L+L C +      ++ W   +        R +++           +++ +
Sbjct: 17  ESLLVHPGDLLQLRCRLRD-DVQSINWLR-DGVQLVESNRTRIT--------GEEVEVRD 66

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
           +  AD G Y C  ++ +  ++     +  V V
Sbjct: 67  SIPADSGLYACVTSSPSGSDT----TYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
           +E +  +        L+C +          I W +    + E    S R   + + + +R
Sbjct: 14  VEVESLLVHPGDLLQLRCRLRDDVQ----SINWLRDGVQLVE----SNRTRITGEEVEVR 65

Query: 172 KTTVDDAGQYSCR 184
            +   D+G Y+C 
Sbjct: 66  DSIPADSGLYACV 78

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
            +V EG+ + +   V G P P V W          Q R       E G     L+I  A 
Sbjct: 15  QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA--EGGLCR--LRILAAE 70

Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
             D G Y C   N              + V+G+
Sbjct: 71  RGDAGFYTCKAVNEYGARQ----CEARLEVRGE 99

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 12/66 (18%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
              +   V   P P     + W +  + +        R  +  +     + I      DA
Sbjct: 22  DVIMSIRVQGEPKP----VVSWLRNRQPVRPD---QRRFAEEAEGGLCRLRILAAERGDA 74

Query: 179 GQYSCR 184
           G Y+C+
Sbjct: 75  GFYTCK 80

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
             + EG  +   C V G+P P + W               +    + GT    L    +T
Sbjct: 18  YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD-GTC--SLHTTAST 74

Query: 275 MADRGNYYCHGNNVA 289
           + D GNY     N  
Sbjct: 75  LDDDGNYTIMAANPQ 89

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 13/67 (19%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTVDD 177
           P T  C V  +P P    +I W+K  K I+     S   T  +D     S+    +T+DD
Sbjct: 25  PVTFTCRVAGNPKP----KIYWFKDGKQISPK---SDHYTIQRDLDGTCSLHTTASTLDD 77

Query: 178 AGQYSCR 184
            G Y+  
Sbjct: 78  DGNYTIM 84

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
            TV      +      G P PT  W   +       G+ KLSE          L+I +  
Sbjct: 16  TTVSSDSVAKFAVKATGEPRPTAIWT-KDGKAITQGGKYKLSEDKGGFF----LEIHKTD 70

Query: 275 MADRGNYYCHGNNVA 289
            +D G Y C   N A
Sbjct: 71  TSDSGLYTCTVKNSA 85

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 13/66 (19%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
                   T  P P      +W K  K+IT+     G+   S+D     + I KT   D+
Sbjct: 23  VAKFAVKATGEPRP----TAIWTKDGKAITQ----GGKYKLSEDKGGFFLEIHKTDTSDS 74

Query: 179 GQYSCR 184
           G Y+C 
Sbjct: 75  GLYTCT 80

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 57.1 bits (138), Expect = 9e-11
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
               V     ++  C   G+P PT+ W   N   F+ + RI   +   +   +  L ++ 
Sbjct: 16  RLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQ---HWSLIMES 71

Query: 273 ATMADRGNYYC 283
              +D+GNY C
Sbjct: 72  VVPSDKGNYTC 82

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQY 181
               +C    +P P     + W K  K   +   + G ++     S+ +      D G Y
Sbjct: 25  TVKFRCPAGGNPMP----TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 80

Query: 182 SCR 184
           +C 
Sbjct: 81  TCV 83

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 14/92 (15%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E   V  G  + L C V   P P + W        +    + L         + VL + E
Sbjct: 18  EGGAVAPGGTVTLTCEVPAQPSPQIHW-------MKDGVPLPLPP-------SPVLILPE 63

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
               D+G Y C   + +    +     + +  
Sbjct: 64  IGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 14/59 (23%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
           TL C V   P P    QI W K    +                + + +    D G YSC
Sbjct: 29  TLTCEVPAQPSP----QIHWMKDGVPLPL---------PPSPVLILPEIGPQDQGTYSC 74

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 42/186 (22%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGN-----------KSITEATELSGRLTQSKD--SITIRK 172
           TL       P     ++ W               K     +    R+   K   ++ I  
Sbjct: 18  TLTILKH--PLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYN 75

Query: 173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDV-IMKPTAKLVETLTVIEGEKLRLECLVVG 231
            + +D G Y  R++                + + +  +K +      E     L C V+ 
Sbjct: 76  VSKEDRGDYYMRMLHETEDQWK------ITMEVYEMVSKPMIY---WECSNATLTCEVLE 126

Query: 232 SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN-VAT 290
                ++   G   + RS  +  +S                     R  + C   N V+ 
Sbjct: 127 GTDVELKLYQGK-EHLRSLRQKTMSYQWTN---------------LRAPFKCKAVNRVSQ 170

Query: 291 RNSQPN 296
            +    
Sbjct: 171 ESEMEV 176

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 24/181 (13%), Positives = 47/181 (25%), Gaps = 39/181 (21%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------ATELSGRLTQSKD--SITIRKT 173
             T       P      +++W K    + E         +    R+       S+TI   
Sbjct: 12  NVTFHVPSNVPLK----EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL 67

Query: 174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSP 233
           T  D  +Y     +   T    L      V+   +  ++      E     L C V+   
Sbjct: 68  TSSDEDEYEMESPNITDTMKFFL-----YVLEMVSKPMI----YWECSNATLTCEVLEGT 118

Query: 234 PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS 293
              ++   G +                   +     +       R  + C   N  ++ S
Sbjct: 119 DVELKLYQGKEHL----------------RSLRQKTMSYQWTNLRAPFKCKAVNRVSQES 162

Query: 294 Q 294
           +
Sbjct: 163 E 163

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 13/107 (12%)

Query: 199 ADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLS 256
           +  D         KL     V +G K+RL    +      V+W         S  +    
Sbjct: 8   SSMDEKKSTAFQKKLEPAYQVSKGHKIRLTV-ELADHDAEVKWLKNGQEIQMSGSKYIFE 66

Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
               K T    L I + ++AD   Y C                ++V+
Sbjct: 67  SIGAKRT----LTISQCSLADDAAYQCVVGGEKC------STELFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 12/84 (14%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----S 167
           +EP Y+V +      L   +         ++ W K  + I  +     +          +
Sbjct: 22  LEPAYQVSK-GHKIRLTVELADHDA----EVKWLKNGQEIQMS---GSKYIFESIGAKRT 73

Query: 168 ITIRKTTVDDAGQYSCRLIDPKST 191
           +TI + ++ D   Y C +   K +
Sbjct: 74  LTISQCSLADDAAYQCVVGGEKCS 97

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP---EKGTANSVLQID 271
            TV +G        VVG P P  EW       +++  +I+ S+             L I 
Sbjct: 15  QTVGQGSDAHFRVRVVGKPDPECEW-------YKNGVKIERSDRIYWYWPEDNVCELVIR 67

Query: 272 EATMADRGNYYCHGNNVA 289
           + T  D  +      N+A
Sbjct: 68  DVTGEDSASIMVKAINIA 85

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 14/67 (20%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTVDD 177
               +  V   P P    +  WYK    I      S R+           + IR  T +D
Sbjct: 22  DAHFRVRVVGKPDP----ECEWYKNGVKIER----SDRIYWYWPEDNVCELVIRDVTGED 73

Query: 178 AGQYSCR 184
           +     +
Sbjct: 74  SASIMVK 80

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           + V EG      C +  +    V W + + T   +    ++   P       VL + +  
Sbjct: 23  VDVQEGSSATFRCRISPANYEPVHWFL-DKTPLHANELNEIDAQPGG---YHVLTLRQLA 78

Query: 275 MADRGNYYC 283
           + D G  Y 
Sbjct: 79  LKDSGTIYF 87

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 12/64 (18%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-----SITIRKTTVDDAGQ 180
           T +C ++         + W+     +      +              +T+R+  + D+G 
Sbjct: 32  TFRCRISPANYEP---VHWFLDKTPLHA----NELNEIDAQPGGYHVLTLRQLALKDSGT 84

Query: 181 YSCR 184
               
Sbjct: 85  IYFE 88

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 6/83 (7%)

Query: 208 TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSV 267
              L     V +G ++R     +  P   V+W   N    R   +        KG    +
Sbjct: 11  AKILDPAYQVDKGGRVRFVV-ELADPKLEVKWY-KNGQEIRPSTKYIFEH---KGC-QRI 64

Query: 268 LQIDEATMADRGNYYCHGNNVAT 290
           L I+   M D   YY    +   
Sbjct: 65  LFINNCQMTDDSEYYVTAGDEKC 87

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 13/84 (15%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----S 167
           ++P Y+V +          +  P      ++ WYK  + I      S +           
Sbjct: 14  LDPAYQVDKGG-RVRFVVELADPKL----EVKWYKNGQEIRP----STKYIFEHKGCQRI 64

Query: 168 ITIRKTTVDDAGQYSCRLIDPKST 191
           + I    + D  +Y     D K +
Sbjct: 65  LFINNCQMTDDSEYYVTAGDEKCS 88

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 35/166 (21%), Positives = 51/166 (30%), Gaps = 30/166 (18%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
           P TL+C    PP  D Y+    K + S            Q +  + I       AG+Y C
Sbjct: 24  PVTLRCQ--GPPGVDLYR--LEKLSSS----------RYQDQAVLFIPAMKRSLAGRYRC 69

Query: 184 RLIDPK--STNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
              +    S  +  L      V  KP+        V  G  + L+C          + R 
Sbjct: 70  SYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQC----------QTRY 119

Query: 242 GNDTYF--RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
           G D +   +               A+    I   T A  G Y C+ 
Sbjct: 120 GFDQFALYKEGDPAPYKNPERWYRAS--FPIITVTAAHSGTYRCYS 163

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 213 ETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
           +T+ V+EGE    EC++   S      W +       S  R + +    K      L + 
Sbjct: 16  KTMEVLEGESCSFECVLSHESASDPAMWTV-GGKTVGSSSRFQATRQGRKYI----LVVR 70

Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
           EA  +D G        + +      +A + VR +    
Sbjct: 71  EAAPSDAGEVVFSVRGLTS------KASLIVRERSGPS 102

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAG 179
             + +C ++          +W  G K++      S R   ++      + +R+    DAG
Sbjct: 25  SCSFECVLSHESA--SDPAMWTVGGKTVGS----SSRFQATRQGRKYILVVREAAPSDAG 78

Query: 180 QYSCR 184
           +    
Sbjct: 79  EVVFS 83

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 204 IMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263
           I+ P+ K    +  +  E++ L C  +  P   V W   +         + L +   + T
Sbjct: 14  IVYPSGK--VYVAAVRLERVVLTC-ELCRPWAEVRWT-KDGEEVVESPALLLQK---EDT 66

Query: 264 ANSVLQIDEATMADRGNYYCHGNNVATR 291
               L +    + D G Y C  ++ +  
Sbjct: 67  -VRRLVLPAVQLEDSGEYLCEIDDESAS 93

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
            L C +  P      ++ W K  + + E    S  L   K+     + +    ++D+G+Y
Sbjct: 32  VLTCELCRPWA----EVRWTKDGEEVVE----SPALLLQKEDTVRRLVLPAVQLEDSGEY 83

Query: 182 SCRLIDPKST 191
            C + D  ++
Sbjct: 84  LCEIDDESAS 93

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 55.4 bits (133), Expect = 5e-10
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWR-------IGNDTYFRSQGRIKLSEHPEKGTAN 265
           ET+TV EG+ L L+C+       +++W          N+       + +L  H       
Sbjct: 9   ETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSAN---Q 65

Query: 266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
             + +   T+ D G Y C   + +          V V V
Sbjct: 66  LSITVPNVTLQDEGVYKCLHYSDSVS-----TKEVKVIV 99

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 16/97 (16%)

Query: 126 TLKCNVTSPPPGDDYQIVW--------YKGNKSITEATELSGRLTQSKD-SITIRKTTVD 176
           TLKC  +      +  + W        +     + + ++       +   SIT+   T+ 
Sbjct: 20  TLKCVTSLRK---NSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQ 76

Query: 177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE 213
           D G Y C       +++    +    V+     +   
Sbjct: 77  DEGVYKCLH----YSDSVSTKEVKVIVLATMKGEFCR 109

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 12/95 (12%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           L V E       C     P  TV WR       R+ G+ + S+  E  T    L I    
Sbjct: 18  LQVEEKGTAVFTC-KTEHPAATVTWR-KGLLELRASGKHQPSQ--EGLTL--RLTISALE 71

Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
            AD   Y C      +R      A + V+ +    
Sbjct: 72  KADSDTYTCDIGQAQSR------AQLLVQGRRSGP 100

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 12/63 (19%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
              C    P       + W KG   +      SG+   S++     +TI      D+  Y
Sbjct: 27  VFTCKTEHPAA----TVTWRKGLLELRA----SGKHQPSQEGLTLRLTISALEKADSDTY 78

Query: 182 SCR 184
           +C 
Sbjct: 79  TCD 81

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 54.6 bits (132), Expect = 7e-10
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E   V  GE + L C +  +  P V W   +    R   +  +     +GT  ++L I  
Sbjct: 16  EDQWVAPGEDVELRCELSRAGTP-VHWL-KDRKAIRKSQKYDVV---CEGT-MAMLVIRG 69

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           A++ D G Y C      +       A ++V  K
Sbjct: 70  ASLKDAGEYTCEVEASKS------TASLHVEEK 96

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
            L+C ++         + W K  K+I +    S +     +     + IR  ++ DAG+Y
Sbjct: 27  ELRCELSRAGT----PVHWLKDRKAIRK----SQKYDVVCEGTMAMLVIRGASLKDAGEY 78

Query: 182 SCRLIDPKST 191
           +C +   KST
Sbjct: 79  TCEVEASKST 88

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 58.3 bits (141), Expect = 7e-10
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 24/170 (14%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           TL+C+       +++    YK ++               ++S  +   T   AG Y+CR 
Sbjct: 42  TLRCH--YRHRFNNFM--LYKEDRIHIP----IFHGRIFQESFNMSPVTTAHAGNYTCRG 93

Query: 186 IDPKSTNTT-----PLA---QADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTV 237
             P S         P+      +     KP+        V  GE++ L+C    S     
Sbjct: 94  SHPHSPTGWSAPSNPVVIMVTGNHR---KPSLLAHPGPLVKSGERVILQC---WSDIMFE 147

Query: 238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN 287
            + +  +   +   R+    H     AN    I    +A  G Y C+G+ 
Sbjct: 148 HFFLHKEGISKDPSRLVGQIHDGVSKAN--FSIGPMMLALAGTYRCYGSV 195

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 44/269 (16%), Positives = 67/269 (24%), Gaps = 28/269 (10%)

Query: 33  IMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLT----EDNFKYSIHEA 87
           +  G  + + C     F         R          F  + N++         Y+   +
Sbjct: 35  VPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGS 94

Query: 88  ILESGYVQSSLFIPRMNAITGNYD-----IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQI 142
              S    S+   P +  +TGN+        P   V        L+C   S    + +  
Sbjct: 95  HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGE-RVILQC--WSDIMFEHF-- 149

Query: 143 VWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS--TNTTPLAQA 199
             +K G                SK + +I    +  AG Y C      +    + P    
Sbjct: 150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPL 209

Query: 200 DFDVIMKPTAKLVETL---TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLS 256
           D  V        +       V  GE + L C    S       R G     R        
Sbjct: 210 DIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHLSREGGAHERRLP------ 263

Query: 257 EHPEKGTANSVLQIDEATMADRGNYYCHG 285
               K                 G Y C G
Sbjct: 264 -AVRKVNRTFQADFPLGPATHGGTYRCFG 291

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 55.0 bits (132), Expect = 9e-10
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 204 IMKPTAKLVETLTVIEGEKLRLECLVVGSP---PPTVEWRIGN--DTYFRSQGRIKLSEH 258
           I KP     +  TV  GE +     V        PT++W  G   D   ++   ++L E 
Sbjct: 11  IEKP-----QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65

Query: 259 PEKGT--ANSVLQIDEATMADRGNYYCHGNNVA 289
            E+ +      +QI +A     GNY C      
Sbjct: 66  FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKD 98

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 11/69 (15%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----------SITIRKTTV 175
           T    V +        I W+KG K +  A++    L   +            + I K   
Sbjct: 26  TFIAKVKAEDLLRKPTIKWFKG-KWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD 84

Query: 176 DDAGQYSCR 184
           + AG Y C 
Sbjct: 85  NFAGNYRCE 93

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 18/98 (18%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW-----RIGNDTYFRSQGRIKLSEHPEKGTANSV 267
           E   V  G+++ +    V      V W      +  +  F+++ R K     + G    +
Sbjct: 16  EDQQVFVGDRVEMAV-EVSEEGAQVMWMKNGVELTREDSFKARYRFK-----KDGK-RHI 68

Query: 268 LQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           L   +    DRG Y    N          EA + V  K
Sbjct: 69  LIFSDVVQEDRGRYQVITNGGQC------EAELIVEEK 100

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 8/63 (12%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
            +   V+        Q++W K    +T       R    KD     +       +D G+Y
Sbjct: 27  EMAVEVSEEGA----QVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRY 82

Query: 182 SCR 184
              
Sbjct: 83  QVI 85

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 204 IMKPTAKLVETLTVIEGEKLRLECLVVGSP---PPTVEWRIGN--DTYFRSQGRIKLSEH 258
           +M+P     +   V  G  +     V G+    PP V+W  G   D   +    ++L + 
Sbjct: 8   VMRP-----QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62

Query: 259 PEKGT--ANSVLQIDEATMADRGNYYCHGNN 287
            ++ +      L I +A  A  G+Y C  + 
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGSYRCEVST 93

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 46.5 bits (110), Expect = 6e-07
 Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 13/89 (14%)

Query: 107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD 166
            G + + P+          T    V          + W+KG     + +   G+  Q  D
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKW--VDLSSKVGQHLQLHD 61

Query: 167 SI-----------TIRKTTVDDAGQYSCR 184
           S             I        G Y C 
Sbjct: 62  SYDRASKVYLFELHITDAQPAFTGSYRCE 90

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
             LTV   E+   +C  V     T +W   N    R   RI +S     G     L ID+
Sbjct: 16  ADLTVKAAEQAVFKC-EVSDEKVTGKWY-KNGVEVRPSKRITIS---HVGR-FHKLVIDD 69

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
               D G+Y    +  A   S    A +   
Sbjct: 70  VRPEDEGDYTFVPDGYALSLS----AKLNFL 96

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 13/88 (14%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
             KC V+           WYK    +      S R+T S       + I     +D G Y
Sbjct: 27  VFKCEVSDEKV----TGKWYKNGVEVRP----SKRITISHVGRFHKLVIDDVRPEDEGDY 78

Query: 182 SCRLIDPKSTNTTPLAQADFDVIMKPTA 209
           +        + +  L   +  V   P++
Sbjct: 79  TFVPDGYALSLSAKLNFLEIKVS-GPSS 105

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEW-RIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
           K +E  T   GE++ LEC  V      V+W + G +     + R ++     +G    +L
Sbjct: 12  KQLEDTTAYCGERVELEC-EVSEDDANVKWFKNGEEIIPGPKSRYRIR---VEGK-KHIL 66

Query: 269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
            I+ AT AD   Y        +       A + V +K
Sbjct: 67  IIEGATKADAAEYSVMTTGGQS------SAKLSVDLK 97

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
            L+C V+         + W+K  + I        R     +     + I   T  DA +Y
Sbjct: 26  ELECEVSEDDA----NVKWFKNGEEIIP--GPKSRYRIRVEGKKHILIIEGATKADAAEY 79

Query: 182 SCRLIDPKST 191
           S      +S+
Sbjct: 80  SVMTTGGQSS 89

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 12/90 (13%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           LT    E++ L C  +        W   +         + +     K      L + EA 
Sbjct: 20  LTFTTSERVVLTC-ELSRVDFPATWY-KDGQKVEESELLVVKMDGRKHR----LILPEAK 73

Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
           + D G + C    V+          V V+ 
Sbjct: 74  VQDSGEFECRTEGVSA------FFGVTVQD 97

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 12/63 (19%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
            L C ++           WYK  + + E    S  L    D     + + +  V D+G++
Sbjct: 29  VLTCELSRVDF----PATWYKDGQKVEE----SELLVVKMDGRKHRLILPEAKVQDSGEF 80

Query: 182 SCR 184
            CR
Sbjct: 81  ECR 83

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWR-------IGNDTYFRSQGRIKLSEHPEKGT 263
           L + +TV+EG    L C V  +   +++W          +D       RI+L        
Sbjct: 12  LTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV-RASWHE 70

Query: 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
            +  + + + +++D G Y C    +  + S+   A++ V  
Sbjct: 71  LS--ISVSDVSLSDEGQYTCSLFTMPVKTSK---AYLTVLG 106

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 37/185 (20%), Positives = 58/185 (31%), Gaps = 18/185 (9%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             T+ C         +YQ   +                  +K    I       AGQYSC
Sbjct: 20  QVTICCQ--GNYGAVEYQ--LHFEGSLFAVDRPKPPE-RINKVKFYIPDMNSRMAGQYSC 74

Query: 184 RLIDP--KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI 241
                   S  +  L     ++   PT  +     VI GEK+   C +  +    +  + 
Sbjct: 75  IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKE 134

Query: 242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301
           G  ++ +             G   +   +   T A RG Y C G+      S P+E  V 
Sbjct: 135 GRSSHVQRG----------YGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEP-VK 183

Query: 302 VRVKG 306
           + V G
Sbjct: 184 LLVTG 188

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
             V  G+  R    V   P   V+W   N    +   +I  +     G     L+I +  
Sbjct: 18  HRVPCGQNTRFILNVQSKPTAEVKW-YHNGVELQESSKIHYTN--TSGV--LTLEILDCH 72

Query: 275 MADRGNYYCHGNNVA 289
             D G Y     N  
Sbjct: 73  TDDSGTYRAVCTNYK 87

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 13/66 (19%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
                 NV   P      ++ WY     + E    S ++  +      ++ I     DD+
Sbjct: 25  NTRFILNVQSKPTA----EVKWYHNGVELQE----SSKIHYTNTSGVLTLEILDCHTDDS 76

Query: 179 GQYSCR 184
           G Y   
Sbjct: 77  GTYRAV 82

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
            ++ V  G     E          V W+    +   +  +  L+    + T    L + E
Sbjct: 16  RSVEVAAGSPAVFEA-ETERAGVKVRWQ-RGGSDISASNKYGLATEGTRHT----LTVRE 69

Query: 273 ATMADRGNYYC 283
              AD+G+Y  
Sbjct: 70  VGPADQGSYAV 80

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 12/63 (19%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
             +            ++ W +G   I+     S +   + +    ++T+R+    D G Y
Sbjct: 27  VFEAETERAGV----KVRWQRGGSDISA----SNKYGLATEGTRHTLTVREVGPADQGSY 78

Query: 182 SCR 184
           +  
Sbjct: 79  AVI 81

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 6/76 (7%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           + V  GE    E   +  P    +W++       +    ++ E  +K      L +    
Sbjct: 15  VEVFVGETAHFEI-ELSEPDVHGQWKL-KGQPLAASPDCEIIEDGKKHI----LILHNCQ 68

Query: 275 MADRGNYYCHGNNVAT 290
           +   G       N  +
Sbjct: 69  LGMTGEVSFQAANTKS 84

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 12/63 (19%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
             +  ++ P         W    + +      S      +D     + +    +   G+ 
Sbjct: 24  HFEIELSEPDV----HGQWKLKGQPLAA----SPDCEIIEDGKKHILILHNCQLGMTGEV 75

Query: 182 SCR 184
           S +
Sbjct: 76  SFQ 78

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
               EG    L+C +  S    VEW+       R  GR  L +   +      LQI + +
Sbjct: 18  KEASEGATATLQCEL--SKVAPVEWK-KGPETLRDGGRYSLKQDGTRCE----LQIHDLS 70

Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
           +AD G Y C      T       A + VR     F
Sbjct: 71  VADAGEYSCMCGQERT------SATLTVRALPARF 99

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 13/63 (20%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
           TL+C ++   P     + W KG +++ +     GR +  +D     + I   +V DAG+Y
Sbjct: 27  TLQCELSKVAP-----VEWKKGPETLRD----GGRYSLKQDGTRCELQIHDLSVADAGEY 77

Query: 182 SCR 184
           SC 
Sbjct: 78  SCM 80

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 215 LTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
               EG  ++  C +      T V W         +  + +++   E G A  +L + + 
Sbjct: 11  AVGEEGGHVKYVCKIENYDQSTQVTWY-FGVRQLENSEKYEITY--EDGVA--ILYVKDI 65

Query: 274 TMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
           T  D G Y C   N    +S    ++  + VKG  
Sbjct: 66  TKLDDGTYRCKVVNDYGEDS----SYAELFVKGVR 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 12/66 (18%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDA 178
                C +          Q+ WY G + +      S +   + +     + ++  T  D 
Sbjct: 18  HVKYVCKIENYDQS---TQVTWYFGVRQLEN----SEKYEITYEDGVAILYVKDITKLDD 70

Query: 179 GQYSCR 184
           G Y C+
Sbjct: 71  GTYRCK 76

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR--SQGRIKLSEHPEKGTANSVLQID 271
            + V EG  ++  C   G PPP + W           S GR+ +         +  L++ 
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFP-------DGTLEVR 446

Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
            A + D G Y C   N    +S       ++ V+
Sbjct: 447 YAQVQDNGTYLCIAANAGGNDS----MPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSC 183
              C     PP     I+W    K +  A + +GRLT   D ++ +R   V D G Y C
Sbjct: 404 QFVCRADGDPPPA---ILWLSPRKHLVSA-KSNGRLTVFPDGTLEVRYAQVQDNGTYLC 458

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 51.6 bits (124), Expect = 9e-09
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           L V+EG    L C++     P V+W    +   R   +  L +  E       L +    
Sbjct: 18  LEVLEGGAATLRCVLSSVAAP-VKWC-YGNNVLRPGDKYSLRQ--EGAML--ELVVRNLR 71

Query: 275 MADRGNYYCHGNNVATR 291
             D G Y C   +  T 
Sbjct: 72  PQDSGRYSCSFGDQTTS 88

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
           TL+C ++S        + W  GN  +        + +  ++     + +R     D+G+Y
Sbjct: 27  TLRCVLSSVAA----PVKWCYGNNVLRP----GDKYSLRQEGAMLELVVRNLRPQDSGRY 78

Query: 182 SCR 184
           SC 
Sbjct: 79  SCS 81

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 10/95 (10%)

Query: 212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
                   G+ L + C         V     N+          +S        N  L   
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVR------NGDLFFK 306

Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
           +  + D G Y C+        +      V ++V  
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLS----VELKVYN 337

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 17/113 (15%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL 185
           T++C+            VW   +     +   +G ++     +  +K  V+D G Y+C  
Sbjct: 265 TIRCDTKQQGMTK----VWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTC-- 318

Query: 186 IDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE 238
               +   T       ++ +          T        L         P  E
Sbjct: 319 ---YAMGETFNETLSVELKVYNFTLHGHHDT--------LNAAADPWSHPQFE 360

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 27/118 (22%), Positives = 35/118 (29%), Gaps = 15/118 (12%)

Query: 190 STNTTPLAQADFDVIMKPTA--KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF 247
           S+ ++    A   V   P    + +      EG    L C +  S    VEW        
Sbjct: 2   SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWW-KGHETL 58

Query: 248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           R   R  L    + G     LQI      D G Y C      T       A + VR  
Sbjct: 59  RDGDRHSLR---QDGARCE-LQIRGLVAEDAGEYLCMCGKERT------SAMLTVRAM 106

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 13/63 (20%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAGQY 181
            L+C ++   P     + W+KG++++ +      R +  +D     + IR    +DAG+Y
Sbjct: 38  VLRCELSKMAP-----VEWWKGHETLRD----GDRHSLRQDGARCELQIRGLVAEDAGEY 88

Query: 182 SCR 184
            C 
Sbjct: 89  LCM 91

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 52.1 bits (124), Expect = 3e-08
 Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 38/207 (18%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
           + PK    E +    + C+ T   P    ++   +        T L+  L   +      
Sbjct: 7   VRPKKLAVEPKGSLEVNCSTTCNQP----EVGGLE--------TSLNKILLDEQAQWKHY 54

Query: 172 K-TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE----TLTVIEGEKLRLE 226
             + +       C       T +      + +V +    + V        V  G+   +E
Sbjct: 55  LVSNISHDTVLQCHF-----TCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIE 109

Query: 227 CLVVGSPPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYY 282
           C V    P    T+    GN+T             P    A +      A   D   N+ 
Sbjct: 110 CRVPTVEPLDSLTLFLFRGNETLHYET---FGKAAPAPQEATATFNS-TADREDGHRNFS 165

Query: 283 CH--------GNNVATRNSQPNEAFVY 301
           C         G N+  ++S P    +Y
Sbjct: 166 CLAVLDLMSRGGNIFHKHSAPKMLEIY 192

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGT---ANSV 267
           ET + I G  +   C    S     T  W   N+    ++         + G      ++
Sbjct: 18  ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTI 77

Query: 268 LQIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYV 302
           L++        G Y C  +N   +  S    A + +
Sbjct: 78  LRLRNVEFTSEGXYQCVISNHFGSSYSV--XAXLTI 111

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 50.6 bits (120), Expect = 4e-08
 Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 17/141 (12%)

Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG 231
           K T     +          T+    A AD ++    +       TV+ G  + L+C V  
Sbjct: 5   KETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKD 64

Query: 232 SPPPTVEWR--------IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
               +++W          G     R   RI+L            + I    +AD G Y C
Sbjct: 65  HEDSSLQWSNPAQQTLYFGEKRALRDN-RIQLVTSTPH---ELSISISNVALADEGEYTC 120

Query: 284 HGNNVATRNSQPNEAFVYVRV 304
               +  R      A   V V
Sbjct: 121 SIFTMPVR-----TAKSLVTV 136

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 4/78 (5%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH---PEKGTANSVLQID 271
           L V +GE   L C   G P PT+EW         +      S     P        +   
Sbjct: 19  LIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSHRMLLPSGSLFFLRIVHG 77

Query: 272 EATMADRGNYYCHGNNVA 289
             +  D G Y C   N  
Sbjct: 78  RKSRPDEGVYVCVARNYL 95

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 12/80 (15%)

Query: 112 IEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSI-TEATELSGRLTQSKD--- 166
             P   +     P TL C     P P     I WYKG + + T+  +             
Sbjct: 14  EHPSDLIVSKGEPATLNCKAEGRPTP----TIEWYKGGERVETDKDDPRSHRMLLPSGSL 69

Query: 167 ---SITIRKTTVDDAGQYSC 183
               I   + +  D G Y C
Sbjct: 70  FFLRIVHGRKSRPDEGVYVC 89

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 49.5 bits (118), Expect = 6e-08
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSIT---------EATELSGRLTQSKD-SITIRKTTV 175
            L+C+++S       Q+ W + ++ +           +     R+       +T++  TV
Sbjct: 22  ILQCHLSSTTA-QVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTV 80

Query: 176 DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK 210
           +D G+Y C          T   +   +V+    A+
Sbjct: 81  NDTGEYFCIYHTYPDGTYT--GRIFLEVLESSVAE 113

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPP--TVEWRIGND---TYFRSQGRIKLSEHPEK--GTAN 265
             ++  +G  + L+C +  +      V W   +          G        ++      
Sbjct: 11  GNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPG 70

Query: 266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
             L +   T+ D G Y+C      T         +++ V   S
Sbjct: 71  LGLTLQSLTVNDTGEYFCI---YHTYPDGTYTGRIFLEVLESS 110

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 15/97 (15%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF---RSQGRIKLSEHPEKGTANSVLQ 269
             L V EG    L+C    +   +V W   N T       + RI +         +  L 
Sbjct: 349 ADLNVTEGMAAELKC-RASTSLTSVSWITPNGTVMTHGAYKVRIAVLS-------DGTLN 400

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
               T+ D G Y C  +N     +    A   + V G
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTT----ASATLNVTG 433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSC 183
            LKC  ++        + W   N ++        R+    D ++     TV D G Y+C
Sbjct: 360 ELKCRASTSLT----SVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 51.9 bits (124), Expect = 8e-08
 Identities = 35/190 (18%), Positives = 54/190 (28%), Gaps = 32/190 (16%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITE-----ATELSGRLTQSKDS---------ITIR 171
            L C VTS  P     I W++G     E           R+T   +S         I+I 
Sbjct: 22  ILHCTVTSLIP--VGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISIS 79

Query: 172 KTTVDDAGQYSC-------RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLR 224
             T  DAG Y C          + KS   T L+          +              + 
Sbjct: 80  NITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATP---QHTVS 136

Query: 225 LECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGT--ANSVLQIDEATMADRGN 280
             C   G  P   T++W    +    S  +  +    E  +   +S  ++          
Sbjct: 137 FTCESHGFSPRDITLKWFKNGNE--LSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQ 194

Query: 281 YYCHGNNVAT 290
             C   +V  
Sbjct: 195 VICEVAHVTL 204

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 37/191 (19%), Positives = 51/191 (26%), Gaps = 20/191 (10%)

Query: 126 TLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
            L+C   S         + ++ G    T           SK + +I     D AG Y C 
Sbjct: 25  ILQCW--SDVRFQ--HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCY 80

Query: 185 LIDPKSTNTT-----PLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEW 239
                S         PL      +  KP+       TV+ GE + L C    S       
Sbjct: 81  GSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYDMYHLS 140

Query: 240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG--NNVATRNSQPNE 297
           R G     R            K                 G Y C G   +     S  ++
Sbjct: 141 REGEAHERRFS-------AGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSD 193

Query: 298 AFVYVRVKGKS 308
             + V V G  
Sbjct: 194 P-LLVSVTGNP 203

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 36/190 (18%)

Query: 126 TLKCNVTSPPPGD--DYQIVWYKGNK-----------------SITEATELSGRLTQSKD 166
           T+ CN+    P +     I W+  +                  +      +S    +S D
Sbjct: 22  TIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGD 81

Query: 167 -SITIRKTTVDDAGQYSCRLIDP--KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKL 223
            S+ +    +++AG+Y C ++    K+  T  L     +V+  P ++L+     ++  + 
Sbjct: 82  ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQL-----EVVASPASRLLLDQVGMKENED 136

Query: 224 RLECLVVGSPPP--TVEW-RIGNDTYFRSQ--GRIKLSEHPEKG----TANSVLQIDEAT 274
           +  C   G  P    + W +         +    +      +         S L+++ + 
Sbjct: 137 KYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQ 196

Query: 275 MADRGNYYCH 284
                 Y C 
Sbjct: 197 EDPGTVYQCV 206

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT--ELSGRLTQSKDSITIRKTTVDDAGQY 181
            FTL C V    P     +   +G + +   +      R   +  + T+     D    +
Sbjct: 106 NFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANF 165

Query: 182 SCR 184
           SCR
Sbjct: 166 SCR 168

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 48.5 bits (115), Expect = 4e-07
 Identities = 34/205 (16%), Positives = 54/205 (26%), Gaps = 29/205 (14%)

Query: 111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI 170
           D++P+    E      L C+   P P    +    + +            L +    I  
Sbjct: 6   DLQPRVAFVERGGSLWLNCSTNCPRP----ERGGLETSLRRNGTQRGLRWLARQLVDIR- 60

Query: 171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL--TVIEGEKLRLECL 228
                +   Q  C     + T     A+       +P    +  L      GE   L C 
Sbjct: 61  -----EPETQPVCFFRCARRTLQ---ARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCR 112

Query: 229 VVGSPPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH- 284
           V G+ P    T+    G     R        E P    A     +         N+ C  
Sbjct: 113 VPGAGPRASLTLTLLRGAQELIRRS---FAGEPPRARGAVLTATVLARREDHGANFSCRA 169

Query: 285 -------GNNVATRNSQPNEAFVYV 302
                  G  +   +S P E   + 
Sbjct: 170 ELDLRPHGLGLFENSSAPRELRTFS 194

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 16/97 (16%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS---QGRIKLSEHPEKGTANSVLQ 269
             L + EG    L+C     P  +V+W + N T         RI +         +  L 
Sbjct: 360 RDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLN-------DGTLN 410

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG 306
                ++D G Y C   NVA  ++    A  Y+ V  
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSN----ASAYLNVST 443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQYSC 183
            LKC            + W   N ++        R++   D ++      + D G Y+C
Sbjct: 371 ELKCRTPPMS-----SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
            TV  G+++ L+C +  + P    W   N    +   R+K+    +KG     L I  A 
Sbjct: 17  QTVNLGKEICLKCEISENIPGK--WTK-NGLPVQESDRLKVV---QKGR-IHKLVIANAL 69

Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
             D G+Y    +           A V+V  
Sbjct: 70  TEDEGDYVFAPDAYNVTLP----AKVHVIS 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 18/90 (20%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD----SITIRKTTVDDAG 179
              LKC ++   P       W K    + E    S RL   +      + I     +D G
Sbjct: 24  EICLKCEISENIP-----GKWTKNGLPVQE----SDRLKVVQKGRIHKLVIANALTEDEG 74

Query: 180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTA 209
            Y     D  +        A   VI  P++
Sbjct: 75  DYVFA-PDAYNVTLP----AKVHVISGPSS 99

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKG---------------NKSITEATE----LSGRLTQSKD 166
            L C+ T P  G    + W KG                +++T        L G L +   
Sbjct: 13  YLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDV 72

Query: 167 SITIRKTTVDDAGQYSCRLIDPKSTN 192
           S+ I+  T+DD G Y CR+  P   N
Sbjct: 73  SLIIKNVTLDDHGTYCCRIQFPGLMN 98

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 21/92 (22%)

Query: 212 VETLTVIEGEKLRLECLVVGSPPPT---VEWRI----------------GNDTYFRSQGR 252
           ++   V  G+   L C        T   + W                    +  ++   R
Sbjct: 1   MDGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSR 60

Query: 253 IKLSEHPEKGTANSVLQIDEATMADRGNYYCH 284
            +L     KG  +  L I   T+ D G Y C 
Sbjct: 61  YQLKGDLNKGDVS--LIIKNVTLDDHGTYCCR 90

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 24/196 (12%), Positives = 50/196 (25%), Gaps = 21/196 (10%)

Query: 126 TLKCNVTSPPPGDDYQIVWYK-GNKSIT--EATELSGRLTQSKDSITIRKTTVDDAGQYS 182
            +   V + P G     +W   G+ + T   A         +   +     T    G  +
Sbjct: 95  NVYVKVNNGPLG---NPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLA 151

Query: 183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIG 242
                                 ++      + + V  G+    +C  +G         + 
Sbjct: 152 I-----DEVKVLGHPCTRTPHFLRI-----QNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201

Query: 243 -NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY 301
             D        IK++         +   +   T  D G Y C            N A + 
Sbjct: 202 GIDVRDAPLKEIKVTSSRRF---IASFNVVNTTKRDAGKYRCMIRTEGGV-GISNYAELV 257

Query: 302 VRVKGKSFGYDRVEAI 317
           V+         ++ ++
Sbjct: 258 VKEPPVPIAPPQLASV 273

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 46.9 bits (111), Expect = 6e-07
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 213 ETLTVIEGEKLRLECL---VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT---ANS 266
            ++ +    ++   C+   V G P P++ W   N +       I              + 
Sbjct: 5   ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 267 VLQIDEATMADRGNYYC 283
            L++++ T  + GNY  
Sbjct: 64  CLRLNQPTHVNNGNYTL 80

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 12/67 (17%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSI-------TEATELSGRLTQSKDSITIRKTTVDD 177
            +  +V   P P     + W      +       TE  E +   T     + + + T  +
Sbjct: 19  CIPFSVDGQPAP----SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVN 74

Query: 178 AGQYSCR 184
            G Y+  
Sbjct: 75  NGNYTLL 81

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 47.4 bits (112), Expect = 9e-07
 Identities = 28/203 (13%), Positives = 47/203 (23%), Gaps = 34/203 (16%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
           + P   +        + C+ +   P     I      K +              +     
Sbjct: 4   VSPSKVILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELLL---------PGNNRKVYE 53

Query: 172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETL--TVIEGEKLRLECLV 229
            + V +  Q  C        +    A+    V   P    +  L      G++L L C V
Sbjct: 54  LSNVQEDSQPMCYSN---CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQV 110

Query: 230 VGSPPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC--- 283
            G  P    TV    G     R               A     +          + C   
Sbjct: 111 EGGAPRAQLTVVLLRGEKELKREP--------AVGEPAEVTTTVLVRRDHHGAQFSCRTE 162

Query: 284 -----HGNNVATRNSQPNEAFVY 301
                 G  +    S P +   +
Sbjct: 163 LDLRPQGLELFENTSAPYQLQTF 185

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 33/215 (15%), Positives = 58/215 (26%), Gaps = 58/215 (26%)

Query: 113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK 172
             +YKV        L C + S        + W K  + + +              + ++ 
Sbjct: 5   NIEYKVSISGTSVELTCPLDSDEN-----LKWEKNGQELPQK---------HDKHLVLQD 50

Query: 173 TT-VDDAGQYSCR-----------------LIDPKSTNTTPLAQADFDVIMKPTAKLVET 214
            + V+D+G Y C                    D    +      A  D   K  ++  + 
Sbjct: 51  FSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKA 110

Query: 215 LTVI------EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
             ++          + L C   G    T++W        +    I      +        
Sbjct: 111 KNLVQVDGSRGDGSVLLTC---GLTDKTIKW-------LKDGSIISPLNATKN-----TW 155

Query: 269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
            +       RG Y C G       S P +  VY R
Sbjct: 156 NLGNNAKDPRGTYQCQGAK---ETSNPLQ--VYYR 185

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 35/178 (19%)

Query: 36  GAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYS------------ 83
           G  + ++C L   E +KW+ NG+ + Q           +  ED+  Y             
Sbjct: 14  GTSVELTCPLDSDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYL 73

Query: 84  ------IHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPF----TLKCNVTS 133
                       +    +            G+   + K  V            L C +T 
Sbjct: 74  YLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTD 133

Query: 134 PPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST 191
                   I W K    I+        L  +K++  +     D  G Y C+     S 
Sbjct: 134 KT------IKWLKDGSIISP-------LNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 20/89 (22%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSIT-------------EATELSGRLTQSKD------ 166
            L C ++        ++ WY+   S               +A E  GR    K+      
Sbjct: 25  ELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGK 84

Query: 167 -SITIRKTTVDDAGQYSCRLIDPKSTNTT 194
            ++ I+     D G Y+C   D       
Sbjct: 85  VALRIQNVRFSDEGGYTCFFRDHSYQEEA 113

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 213 ETLTVIEGEKLRLECLVVGSP---PPTVEWRIGN--DTYFRSQGRIKLSEHPEKGTANSV 267
           ++++V  G+   +   V G      PT++W  G   +   +S  R    E     +    
Sbjct: 20  DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79

Query: 268 --LQIDEATMADRGNYYCHGNNVATRNS 293
             L I +  + DRG Y        T +S
Sbjct: 80  VELHIGKVVLGDRGYYRLEVKAKDTCDS 107

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 9/76 (11%)

Query: 213 ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
             LT + G+ + L C  V      TV W +              S           L + 
Sbjct: 14  GVLTSLPGDSVTLTCPGVEPEDNATVHWVLR--------KPAAGSHPSRWAGMGRRLLLR 65

Query: 272 EATMADRGNYYCHGNN 287
              + D GNY C+   
Sbjct: 66  SVQLHDSGNYSCYRAG 81

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 26/183 (14%), Positives = 44/183 (24%), Gaps = 30/183 (16%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             TL C    P    +  + W     +         R       + +R   + D+G YSC
Sbjct: 23  SVTLTCPGVEPED--NATVHWVLRKPAAGS---HPSRWAGMGRRLLLRSVQLHDSGNYSC 77

Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIG 242
                      P       V + P             E+ +L C           EW   
Sbjct: 78  YRAG------RPAGTVHLLVDVPP-------------EEPQLSCFRKSPLSNVVCEWGPR 118

Query: 243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
           +        +  L     + +     Q       +   + C        +S      V +
Sbjct: 119 STPS--LTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYI---VSM 173

Query: 303 RVK 305
            V 
Sbjct: 174 CVA 176

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 9/100 (9%)

Query: 190 STNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS 249
              +   A  D                V EG+     C V+ S PP V W        + 
Sbjct: 467 QEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTW-------HKD 519

Query: 250 QGRIKLSEHPEKGTANSV--LQIDEATMADRGNYYCHGNN 287
              +K S    K    +   L I+     D+G Y     N
Sbjct: 520 DRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 126 TLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
              C V  S PP     + W+K ++ + ++ +   R   +   +TI +   DD G+Y+ R
Sbjct: 501 NFYCRVIASSPP----VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 556

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 23/92 (25%)

Query: 126 TLKCNVTSP-PPGDDYQIVWYK----------------GNKSITEATELSGRLTQSKD-- 166
           TL C+  S     DD    W                  G   I E      R+    D  
Sbjct: 18  TLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPS 77

Query: 167 ----SITIRKTTVDDAGQYSCRLIDPKSTNTT 194
               SI I      D G ++C + +P      
Sbjct: 78  WKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGK 109

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 25/116 (21%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPP----TVEW-------------------RIGNDTYFRS 249
             +    G ++ L C    S       +  W                   +   D     
Sbjct: 7   REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTF 66

Query: 250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           + RI+    P     +  + I     +D G + C   N      + ++  +YV  K
Sbjct: 67  KERIQWVGDPSWKDGS--IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 43.4 bits (102), Expect = 8e-06
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 21/87 (24%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATE-------------------LSGRLTQSKD 166
           TL C  ++          W +G    +                       L G +++   
Sbjct: 16  TLPCTYSTYR--GITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDV 73

Query: 167 SITIRKTTVDDAGQYSCRLIDPKSTNT 193
           S+TI  +   D+G Y CR+  P   N 
Sbjct: 74  SLTIENSVESDSGLYCCRVEIPGWFND 100

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 40.7 bits (95), Expect = 8e-05
 Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 19/85 (22%)

Query: 216 TVIEGEKLRLECLVVGSPPP-TVEW----------------RIGNDTYFRSQGRIKLSEH 258
             + G  + L C         T  W                  G+   ++   R  L  H
Sbjct: 8   KGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGH 67

Query: 259 PEKGTANSVLQIDEATMADRGNYYC 283
             +G  +  L I+ +  +D G Y C
Sbjct: 68  ISEGDVS--LTIENSVESDSGLYCC 90

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 45.8 bits (108), Expect = 9e-06
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 12/169 (7%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSI-----TEATELSGRLTQSKDSITIRKTTVDDAGQ 180
            L C V+   PG   QI W +  + +     T +T   G L  ++  +T+ +        
Sbjct: 28  QLLCLVSGYTPGT-IQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT 86

Query: 181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE--TLTVIEGEKLRLECLVVGSPPP--- 235
           Y+C++     T      +         +A L       +   +   + CLVV   P    
Sbjct: 87  YTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGT 146

Query: 236 -TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
             + W   +        R +  +     T  S L +      +   Y C
Sbjct: 147 VQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQC 195

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 15/93 (16%)

Query: 213 ETLTVIEGEKLRLECLVVGSPP-PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
             + V  G   +L C +  +    +V+WR G DT   +          +  T  SVL + 
Sbjct: 15  PVVAVALGASRQLTCRLACADRGASVQWR-GLDTSLGAV---------QSDTGRSVLTVR 64

Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
            A+++  G   C G+       +  +  V + V
Sbjct: 65  NASLSAAGTRVCVGSC----GGRTFQHTVQLLV 93

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 14/120 (11%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
              L C +     G    + W   + S+      +GR       +T+R  ++  AG   C
Sbjct: 24  SRQLTCRLACADRGAS--VQWRGLDTSLGAVQSDTGRSV-----LTVRNASLSAAGTRVC 76

Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP---TVEWR 240
                  T           V   P    V    ++ G+   + C      P     + + 
Sbjct: 77  VGSCGGRTFQ---HTVQLLVYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFS 132

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 34/169 (20%), Positives = 48/169 (28%), Gaps = 23/169 (13%)

Query: 126 TLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCR 184
            L+C   S    + +    ++ G  + T           SK + +I + T D AG Y C 
Sbjct: 26  ILQCW--SDVMFEHFL--LHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCY 81

Query: 185 LIDPKSTNTT-----PLA---QADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT 236
                S         PL       ++   KP+       TV+ GE + L C    S    
Sbjct: 82  GSVTHSPYQVSAPSDPLDIVIIGLYE---KPSLSAQPGPTVLAGENVTLSCSSRSSYDMY 138

Query: 237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG 285
              R G     R            K                 G Y C G
Sbjct: 139 HLSREGEAHERRLP-------AGPKVNGTFQADFPLGPATHGGTYRCFG 180

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 30/207 (14%), Positives = 50/207 (24%), Gaps = 29/207 (14%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDD----YQIVWYKGNKSITEATELSGRLTQSKDS 167
           I P+  V +    FT  C +              IVW   + +I +        T S  S
Sbjct: 8   ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTAS--S 65

Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLEC 227
           +T       +  Q +C ++         +        + P             +   L C
Sbjct: 66  VTFTDIASLN-IQLTCNIL-TFGQLEQNVYGITIISGLPP------------EKPKNLSC 111

Query: 228 LVVGSPPPTVEWRIGNDT--------YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG 279
           +V        EW  G +T                      ++ T  S             
Sbjct: 112 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 171

Query: 280 NYYCHGNNVA-TRNSQPNEAFVYVRVK 305
             +    N      S         +VK
Sbjct: 172 EVWVEAENALGKVTSDHINFDPVYKVK 198

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 18/96 (18%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITE-------------ATELSGRLTQSKD-----S 167
            ++C            + W   + S +                +  GRL  S       S
Sbjct: 20  KIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGDVS 79

Query: 168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203
           + I    +DD   Y+C +          +     ++
Sbjct: 80  LQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIEL 115

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 20/79 (25%)

Query: 126 TLKCNVTSPPPGDDY--QIVWYKGNKSITEAT---------ELSGRLTQSKD-------- 166
           TL C +  P     +  Q+ W +  +S + A            S RL             
Sbjct: 19  TLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRN 78

Query: 167 -SITIRKTTVDDAGQYSCR 184
            S+ +    V+D G Y+C 
Sbjct: 79  ASLRMFGLRVEDEGNYTCL 97

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 21/113 (18%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPT-----VEWR------------IGNDTYFRSQGRIKL 255
             +    G+ + L C +            + W                   +    R++ 
Sbjct: 8   TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67

Query: 256 SEHPEKGTANSV-LQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
                     +  L++    + D GNY C      T         +++RV  K
Sbjct: 68  VAARLGAELRNASLRMFGLRVEDEGNYTCL---FVTFPQGSRSVDIWLRVLAK 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 41/290 (14%), Positives = 81/290 (27%), Gaps = 75/290 (25%)

Query: 2   SMIHLCLSLLAIFVHQSISADGKITYFGDTEIM-EGAPINISCILTIFEQVKWQLNGRNI 60
           ++I   L++L    ++          F    +    A I    +L++     W  +    
Sbjct: 357 TIIESSLNVLEPAEYRK--------MFDRLSVFPPSAHIPTI-LLSLI----WF-DVIKS 402

Query: 61  NQSSVDSGFAATANLTEDN--FKYSIHEAILESGYVQSSLFIPRMNAITGNYDIEPKYKV 118
           +   V +     + + +       SI    LE            ++       ++     
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLE--LKVKLENEYALHRSI----VD----- 451

Query: 119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKG----NKSITEATELSGRLTQSKDSITIRKTT 174
             Y +P T   +   PP  D Y    + G    N    E   L             R   
Sbjct: 452 -HYNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTL------------FRMVF 497

Query: 175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEK--LRLECLVVGS 232
           +D       R ++ K  + +    A        +  ++ TL  ++  K  +         
Sbjct: 498 LDF------RFLEQKIRHDSTAWNA--------SGSILNTLQQLKFYKPYICDND----- 538

Query: 233 PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY 282
             P  E  +     F  +    L           +L+I  A MA+    +
Sbjct: 539 --PKYERLVNAILDFLPKIEENLICSKYT----DLLRI--ALMAEDEAIF 580

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 14/81 (17%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKG----------NKSITEATELSGRLT--QSKDSITIRKT 173
           TL  + +   P +  Q+ W+             KS    ++  GR+       ++ I K 
Sbjct: 23  TLNISES--LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKV 80

Query: 174 TVDDAGQYSCRLIDPKSTNTT 194
             +D   Y  R++        
Sbjct: 81  QKEDNSTYIMRVLKKTGNEQE 101

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 25/96 (26%)

Query: 126 TLKCNVTSPPP-----------------GDDYQIVWYKGNKSITE-ATELSGRLTQSKD- 166
            L C  T  P                    D  I+ Y G+K   +   +L GR+  + + 
Sbjct: 24  YLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSND 83

Query: 167 ------SITIRKTTVDDAGQYSCRLIDPKSTNTTPL 196
                 SI +    + D G Y C++          +
Sbjct: 84  LKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKI 119

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A Length = 475

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 12/186 (6%)

Query: 110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS--ITEATELSGRLTQSKDS 167
               P  +         L C +T           W   +    +    E       S  S
Sbjct: 250 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSS 309

Query: 168 -ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE--TLTVIEGEKLR 224
            +       +    ++C    P+S        +      +P   L+   +  +   E + 
Sbjct: 310 VLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVT 369

Query: 225 LECLVVGSPPP--TVEWRIGN-----DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD 277
           L CL  G  P    V W  G+     + Y     R + S+        S+L++       
Sbjct: 370 LTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKK 429

Query: 278 RGNYYC 283
              + C
Sbjct: 430 GDTFSC 435

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae} Length = 135

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 13/110 (11%), Positives = 25/110 (22%), Gaps = 30/110 (27%)

Query: 114 PKYKVFEYR-VPFTLKCNVTSPPPGDDYQIVWYKGNKSITE------------------- 153
              +V  +      L C+           I W KG                         
Sbjct: 10  THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 69

Query: 154 -------ATELSGRLT---QSKDSITIRKTTVDDAGQYSCRLIDPKSTNT 193
                    +  GR +    +  ++ +      D G+Y C++        
Sbjct: 70  SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 119

>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1 Length = 119

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 25/111 (22%)

Query: 213 ETLTVIEGEKLRLEC-------------LVVGSPPPTVEW-----RIGNDTYFRSQGRIK 254
           E   + EG+ L ++C               +       +      R   +++    GRI 
Sbjct: 7   EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 66

Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           L ++ + G     +++    + D G Y C                ++ R++
Sbjct: 67  LEDYHDHGLLR--VRMVNLQVEDSGLYQC-----VIYQPPKEPHMLFDRIR 110

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 20/78 (25%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATE-------------------LSGRLTQSKD 166
           TL C   S   G    + W  G    +                       L G +++   
Sbjct: 16  TLPCIY-STHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNV 74

Query: 167 SITIRKTTVDDAGQYSCR 184
           S+TI  T V D G Y C 
Sbjct: 75  SLTIENTVVGDGGPYCCV 92

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 20/89 (22%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPP--TVEWRI----------------GNDTYFRSQGRIK 254
             +  + G  + L C+          + W +                G     +   R +
Sbjct: 5   TAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQ 64

Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYC 283
           L  +  +G  +  L I+   + D G Y C
Sbjct: 65  LKGNISEGNVS--LTIENTVVGDGGPYCC 91

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 32/91 (35%)

Query: 126 TLKCNVTSPPPGDD-YQIVWYKGN----------------KSITEATELSGRLTQSKD-- 166
            L C++  P PG     + W + +                 S       S RL+      
Sbjct: 21  ELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQ 80

Query: 167 -------------SITIRKTTVDDAGQYSCR 184
                        ++ +   TV+D G Y+C 
Sbjct: 81  STGQDTEAELQDATLALHGLTVEDEGNYTCE 111

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 20/174 (11%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI----TIRKTTVDDAGQY 181
            L C +T           W   +   +       R      S+           +    +
Sbjct: 23  NLTCTLTGLRDASGVTFTWTPSSGK-SAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTF 81

Query: 182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLV----ETLTVIEGEKLRLECLVVG-SPPP- 235
           +C    P+S        +      +P   L+    E L     E + L CL  G SP   
Sbjct: 82  TCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELA--LNELVTLTCLARGFSPKDV 139

Query: 236 TVEWRIGNDTYFRSQGRIKLSEHPEKGTAN------SVLQIDEATMADRGNYYC 283
            V W          +  +  +   E           S+L++          + C
Sbjct: 140 LVRWLQ-GSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSC 192

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 16/171 (9%)

Query: 126 TLKCNVTS-PPPGDDYQIVWYKGNKSITEATELSGRLTQSKD------SITIRKTTVDDA 178
            + C V        D QI W+  N  +  A   +              ++ I+       
Sbjct: 259 IVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT-HREDYNSTLRVVSALPIQHQDWMSG 317

Query: 179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT----VIEGEKLRLECLVVGSPP 234
            ++ C++ +       P+ +          A  V  L      +  +++ L C+V    P
Sbjct: 318 KEFKCKVNNKDLP--APIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMP 375

Query: 235 P--TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC 283
               VEW     T    +    + +        S L++++    +R +Y C
Sbjct: 376 EDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSC 426

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 20/78 (25%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEATE-------------------LSGRLTQSKD 166
           TL C+           + W KG+   ++                      L G++   + 
Sbjct: 15  TLPCHY-LSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEV 73

Query: 167 SITIRKTTVDDAGQYSCR 184
           S+TI  T   D+G Y CR
Sbjct: 74  SLTISNTNRGDSGVYCCR 91

>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1 Length = 127

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 25/111 (22%)

Query: 213 ETLTVIEGEKLRLEC-------------LVVGSPPPTVEWRIGNDTYFRS-----QGRIK 254
           E   + EG+ L ++C               +       +     +   ++      GRI 
Sbjct: 12  EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRII 71

Query: 255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           L ++ + G     +++    + D G Y C                ++ R++
Sbjct: 72  LEDYHDHGLLR--VRMVNLQVEDSGLYQC-----VIYQPPKEPHMLFDRIR 115

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1 Length = 117

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 18/87 (20%)

Query: 213 ETLTVIEGEKLRLEC--------------LVVGSPPPTVEWRIGNDTYFRS--QGRIKLS 256
           E +  +EG  + + C                           I ++ Y  S   GR  L+
Sbjct: 8   EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67

Query: 257 EHPEKGTANSVLQIDEATMADRGNYYC 283
             PE GT   V+ I + +  D G Y C
Sbjct: 68  NFPENGTF--VVNIAQLSQDDSGRYKC 92

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N Length = 113

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGN--KSITEATELSGRLTQSKD------SITIRKTTVDD 177
           T+ C +            WY+    +   E+    GR  ++ +      S+ I   TV+D
Sbjct: 19  TINCVLRDASYALGS-TCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVED 77

Query: 178 AGQYSCRLIDPKSTNTTPLAQADFDV 203
            G Y C L          L  + +  
Sbjct: 78  GGTYRCGLGVAGGYCDYALCSSRYAE 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	100.0
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	100.0
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	100.0
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	100.0
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	100.0
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	100.0
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.98
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.98
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.98
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.97
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.97
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.97
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.97
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.97
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.97
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.97
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.97
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.97
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.97
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.97
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.97
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.97
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.97
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.96
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.96
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.96
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.96
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.96
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.96
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.96
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.96
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.95
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.95
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.95
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.95
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.95
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.95
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.94
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.94
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.94
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.94
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.94
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.94
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.94
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.94
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.94
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.94
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.94
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.94
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.94
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.93
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.93
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.93
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.93
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.93
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.93
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.93
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.93
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.93
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.93
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.93
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.93
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.93
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.92
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.92
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.92
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.92
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.92
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.92
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.92
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.92
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.92
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.92
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.92
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.92
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.92
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.92
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.92
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.91
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.91
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.91
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.91
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.91
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.91
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.91
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.91
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.91
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.9
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.9
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.9
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.9
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.9
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.9
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.9
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.9
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.9
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.9
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.9
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.89
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.89
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.89
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.89
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.89
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.89
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.89
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.89
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.88
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.88
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.88
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.88
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.87
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.87
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.87
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.87
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.87
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.86
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.86
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.86
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.86
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.86
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.86
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.86
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.86
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.86
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.86
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.85
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.85
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.85
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.85
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.85
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.85
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.85
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.85
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.85
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.85
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.85
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.84
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.84
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.84
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.84
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.84
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.84
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.84
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.84
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.84
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.84
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.84
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.84
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.84
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.84
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.84
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.84
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.83
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.83
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.83
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.83
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.83
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.83
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.83
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.83
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.83
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.83
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.82
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.82
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.82
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.82
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.82
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.82
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.82
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.82
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.82
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.82
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.82
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.82
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.82
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.82
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.82
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.82
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.81
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.81
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.81
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.81
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.81
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.81
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.81
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.81
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.81
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.81
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.81
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.81
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.81
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.8
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.8
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.8
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.8
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.8
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.8
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.8
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.8
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.8
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.8
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.8
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.8
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.8
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.8
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.8
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.8
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.8
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.8
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.79
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.79
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.79
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.79
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.79
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.79
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.79
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.79
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.79
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.79
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.79
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.78
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.78
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.78
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.78
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.78
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.78
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.78
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.78
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.78
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.78
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.78
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.78
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.78
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.78
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.78
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.77
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.77
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.77
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.77
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.77
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.77
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.77
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.77
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.77
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.76
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.76
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.76
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.76
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.76
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.76
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.76
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.76
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.76
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.76
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.76
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.75
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.75
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.75
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.75
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.75
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.75
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.74
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.74
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.74
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.74
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.74
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.73
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.73
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.73
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.73
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.73
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.73
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.73
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.72
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.72
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.72
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.72
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.72
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.72
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.72
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.72
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.72
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.72
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.72
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.71
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.71
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.71
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.71
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.71
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.71
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.71
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.71
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.71
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.71
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.7
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.7
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.7
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.7
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.7
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.69
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.69
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.69
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.69
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.69
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.69
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.69
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.68
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.68
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.68
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.68
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.68
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.68
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.68
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.67
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.67
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.67
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.67
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.66
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.66
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.66
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.66
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.66
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.65
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.65
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.64
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.64
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.64
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.64
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.64
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.64
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.64
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.64
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.64
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.63
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.63
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.63
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.63
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.63
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.63
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.63
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.63
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.62
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.62
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.62
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.62
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.62
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.62
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.62
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.62
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.62
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.62
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.62
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.61
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.61
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.61
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.61
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.6
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.6
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.6
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.6
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.59
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.59
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.59
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.59
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.59
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.58
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.58
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.58
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.58
1he7_A	126	High affinity nerve growth factor receptor; transf	99.57
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.57
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.57
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.57
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.57
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.57
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.57
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.56
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.56
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.56
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.55
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.55
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.55
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.55
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.55
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.55
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.55
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.54
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.54
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.54
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.53
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.52
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.52
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.52
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.52
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.51
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.51
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.51
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.51
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.51
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.5
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.5
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.5
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.5
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.5
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.49
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.49
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.49
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.49
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.49
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.48
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.48
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.48
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.46
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.46
2ens_A	96	Advanced glycosylation END product-specific recept	99.46
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.46
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.45
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.45
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.45
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.45
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.45
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.44
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.44
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.43
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.43
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.42
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.42
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.42
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.42
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.41
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.4
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.4
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.39
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.39
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.39
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.39
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.38
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.37
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.37
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.37
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.37
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.36
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.36
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.35
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.35
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.35
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.34
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.34
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.34
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.34
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.34
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.34
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.33
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.33
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.33
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	99.33
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.33
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.33
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.32
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.31
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.3
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.3
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.3
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.3
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.3
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.3
2ens_A	96	Advanced glycosylation END product-specific recept	99.3
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.3
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.29
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	99.29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.29
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.29
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.29
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.29
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.29
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.29
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.28

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=2.4e-35  Score=241.18  Aligned_cols=259  Identities=17%  Similarity=0.345  Sum_probs=195.9

Q ss_pred             eEEEeeceEEecCCcEEEEEEec--cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeec
Q psy15235         24 KITYFGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLF   99 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~   99 (323)
                      ....+.++.+.+|++++|.|.+.  +.+.++|+++|..+...   ..  +..........|.|.+++.  +|.|+|.+.+
T Consensus         8 ~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~---~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            8 FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG---GN--YKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             EEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSS---SS--EEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCC---Cc--EEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            33456678899999999999954  56799999999877653   11  2222334556777777654  9999999988


Q ss_pred             cCCccceeeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----ecee
Q psy15235        100 IPRMNAITGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKD  166 (323)
Q Consensus       100 ~~~~~~~~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~  166 (323)
                      ..+.......+.+         .+....+..|+.+.|.|.+.+.+   .+.+.|++++..+..    ..++.    ....
T Consensus        83 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~  155 (284)
T 2rik_A           83 VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP---EIKVLWYKDETEIQE----SSKFRMSFVESVA  155 (284)
T ss_dssp             TTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSS---CCEEEEEETTEECCC----SSSEEEEEETTEE
T ss_pred             CCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeC---CCEEEEEECCEECcC----CCcEEEEEcCCEE
Confidence            7665433333322         12233477899999999999887   789999999998876    33332    4567


Q ss_pred             EEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCee
Q psy15235        167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT  245 (323)
Q Consensus       167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~  245 (323)
                      .|.|.+++.+|+|.|+|.+ .+..  +.....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..
T Consensus       156 ~L~i~~~~~~d~G~Y~C~a-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~  232 (284)
T 2rik_A          156 VLEMYNLSVEDSGDYTCEA-HNAA--GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE  232 (284)
T ss_dssp             EEEECSCCGGGCEEEEEEE-ECSS--CEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEE
T ss_pred             EEEECCCCcccCEEEEEEE-EcCC--CceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEE
Confidence            8999999999999999999 7763  345667788888888766 34456788999999999999999999999999998


Q ss_pred             eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      +... .++.+..  .+  ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|++
T Consensus       233 ~~~~-~~~~~~~--~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~~  284 (284)
T 2rik_A          233 LRSG-KKYKIMS--EN--FLTSIHILNVDSADIGEYQCKASNDVGS----YTCVGSITLKA  284 (284)
T ss_dssp             ECBT-TTEEEEE--ET--TEEEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEECC
T ss_pred             CcCC-CCEEEEE--cC--CEEEEEEcCCCcccCEEEEEEEEeCCCc----eeEEEEEEEcC
Confidence            8644 3333331  01  2478999999999999999999999966    77888888763

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=1.8e-34  Score=236.74  Aligned_cols=262  Identities=19%  Similarity=0.260  Sum_probs=191.4

Q ss_pred             EEeeceEEecCCcEEEEEEecc---CceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeec
Q psy15235         26 TYFGDTEIMEGAPINISCILTI---FEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLF   99 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~~~---~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~   99 (323)
                      ..+.+..+.+|++++|.|.+.+   .+.+.|++ +|..+...   ...............|.|.+++.  +|.|+|.+.+
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   83 (291)
T 1qz1_A            7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA   83 (291)
T ss_dssp             EESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSS---CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccC---CceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEc
Confidence            3566788999999999999543   47999999 77666543   11222222334566777777654  9999999998


Q ss_pred             cCCcc-ceeeee--------eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEE
Q psy15235        100 IPRMN-AITGNY--------DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSIT  169 (323)
Q Consensus       100 ~~~~~-~~~~~~--------~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~  169 (323)
                      ..+.. .....+        ...+....+.+|+.+.|.|.+.+.+   .+.+.|++++..+..  ....++. .....|.
T Consensus        84 ~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p---~~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~  158 (291)
T 1qz1_A           84 EDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL---PPTIIWKHKGRDVIL--KKDVRFIVLSNNYLQ  158 (291)
T ss_dssp             TTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSS---CCEEEEEETTSCSST--TCCTTEEECTTSCEE
T ss_pred             CCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCC---CCEEEEEECCEEccc--CCCceEEEccCCcEE
Confidence            76432 111122        2244455578899999999999987   679999999987754  1123333 4456899


Q ss_pred             EeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeee---ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeee
Q psy15235        170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY  246 (323)
Q Consensus       170 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~  246 (323)
                      |.++..+|+|.|+|.+ .+..+.......+.+.|..+|.+...   ....+.+|+.+.|.|.+.|+|.|.+.|++++..+
T Consensus       159 i~~~~~~d~G~Y~C~a-~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~  237 (291)
T 1qz1_A          159 IRGIKKTDEGTYRCEG-RILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPI  237 (291)
T ss_dssp             ETTCCGGGCEEEEEEE-EEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEEC
T ss_pred             EccCccccCeEEEEEE-EecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEEC
Confidence            9999999999999999 65533333445667777777766532   2446778999999999999999999999999987


Q ss_pred             eccC---CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        247 FRSQ---GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       247 ~~~~---~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ....   .++....      ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.+
T Consensus       238 ~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~~  290 (291)
T 1qz1_A          238 ENEEEDDEKHIFSD------DSSELTIRNVDKNDEAEYVCIAENKAGE----QDASIHLKVFA  290 (291)
T ss_dssp             CCC--CCSSEEECT------TSCEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEEC
T ss_pred             cCCCCCCcceEEcC------CCcEEEEEecChhcCEEEEEEEEeCCCc----eEEEEEEEEEc
Confidence            6543   2333331      3578999999999999999999999966    78888888865

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.6e-33  Score=250.58  Aligned_cols=259  Identities=17%  Similarity=0.366  Sum_probs=196.1

Q ss_pred             eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCc
Q psy15235         28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRM  103 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~  103 (323)
                      +....+.+|++++|.|.+  .|.+.++|+|+|..+...   ..  +..........|.|.++..  +|.|+|.+.|..+.
T Consensus       204 p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~---~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  278 (570)
T 3b43_A          204 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG---GN--YKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK  278 (570)
T ss_dssp             CCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTT---SS--EEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEE
T ss_pred             CceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCC---Cc--EEEEEECCEEEEEEcccCcccCEEEEEEEECCCCc
Confidence            345668899999999994  466799999999877543   11  1222234455677777654  99999999988776


Q ss_pred             cceeeeeee--CC-------ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEE
Q psy15235        104 NAITGNYDI--EP-------KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITI  170 (323)
Q Consensus       104 ~~~~~~~~~--~~-------~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i  170 (323)
                      ......+.+  .|       ....+.+|+.+.|.|.+.+.|   .+.+.|++++..+..    ..++.    .....|.|
T Consensus       279 ~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P---~p~v~W~k~~~~l~~----~~~~~~~~~~~~~~L~i  351 (570)
T 3b43_A          279 DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP---EIKVLWYKDETEIQE----SSKFRMSFVESVAVLEM  351 (570)
T ss_dssp             EEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSS---SCEEEEEETTEECCC----SSSEEEEEETTEEEEEE
T ss_pred             EEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCC---CCEEEEeECCEECCC----CCcEEEEEECCEEEEEE
Confidence            544333333  11       122367899999999999988   789999999998876    33332    45578999


Q ss_pred             eeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc
Q psy15235        171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS  249 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~  249 (323)
                      .+++.+|+|.|+|.| .|..+  .......|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...
T Consensus       352 ~~v~~~D~G~Y~C~a-~N~~g--~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~  428 (570)
T 3b43_A          352 YNLSVEDSGDYTCEA-HNAAG--SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG  428 (570)
T ss_dssp             ESCCGGGCEEEEEEE-EBTTB--CCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSS
T ss_pred             CCCCcccCEEEEEEE-EeCCC--EEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCC
Confidence            999999999999999 77743  45667788888888766 444566788999999999999999999999999988643


Q ss_pred             CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                       .++.+..  .+  ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|..+|..
T Consensus       429 -~~~~~~~--~~--~~~~L~i~~v~~~D~G~Y~C~A~N~~G~----~~~~~~l~v~~~P~~  480 (570)
T 3b43_A          429 -KKYKIMS--EN--FLTSIHILNVDSADIGEYQCKASNDVGS----DTCVGSITLKAPPRF  480 (570)
T ss_dssp             -SSEEEEE--ET--TEEEEEECSCCGGGCEEEEEEEECSSCE----EEEEEEEEECCCCEE
T ss_pred             -CCEEEEE--cC--CEEEEEECCCChhhCEEEEEEEEECCCe----EEEEEEEEeccCCcc
Confidence             3444331  01  2468999999999999999999999965    777888888776653

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.1e-33  Score=251.26  Aligned_cols=252  Identities=18%  Similarity=0.300  Sum_probs=193.1

Q ss_pred             eEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCccce
Q psy15235         31 TEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMNAI  106 (323)
Q Consensus        31 ~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~~~  106 (323)
                      ..+.+|+.+.|.|.+  .|.+.+.|+|+|..+....   .  +..........|.|.+++  |+|.|+|.+.|..+....
T Consensus       301 ~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~---~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~  375 (570)
T 3b43_A          301 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS---K--FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS  375 (570)
T ss_dssp             CCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSS---S--EEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEE
T ss_pred             cEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCC---c--EEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEE
Confidence            457899999999994  5678999999998876641   1  122233445567777665  499999999998776543


Q ss_pred             eeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeee
Q psy15235        107 TGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTT  174 (323)
Q Consensus       107 ~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~  174 (323)
                      ...+.+        .+....+.+|+.+.|.|.+.+.|   .+.|.|++++..+..    +.++.    .....|.|.++.
T Consensus       376 ~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~i~~v~  448 (570)
T 3b43_A          376 STSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTP---PFQVSWHKDKRELRS----GKKYKIMSENFLTSIHILNVD  448 (570)
T ss_dssp             EEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSS---SCCCEEEETTEECCS----SSSEEEEEETTEEEEEECSCC
T ss_pred             EEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCC---CCEEEEEECCEECcC----CCCEEEEEcCCEEEEEECCCC
Confidence            333332        34444567899999999999988   789999999998876    44443    234689999999


Q ss_pred             cCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCee
Q psy15235        175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI  253 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~  253 (323)
                      .+|+|.|+|.| .|..+  .......|.|..+|.+. .+....+..|+.+.|.|.+.|.|++.+.|++++..+.....++
T Consensus       449 ~~D~G~Y~C~A-~N~~G--~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~  525 (570)
T 3b43_A          449 SADIGEYQCKA-SNDVG--SDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNI  525 (570)
T ss_dssp             GGGCEEEEEEE-ECSSC--EEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTE
T ss_pred             hhhCEEEEEEE-EECCC--eEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeE
Confidence            99999999999 78744  34556778888888765 3445667889999999999999999999999987665444444


Q ss_pred             eeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       254 ~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      .+..  .+  ...+|.|.+++.+|+|.|+|.|.|..|.    .+..+.|.|.
T Consensus       526 ~~~~--~~--~~~~L~i~~~~~~d~G~Y~C~a~N~~G~----~~~~a~L~V~  569 (570)
T 3b43_A          526 WISY--SE--NIATLQFSRAEPANAGKYTCQIKNEAGT----QECFATLSVL  569 (570)
T ss_dssp             EECC--CS--SEEEEEESSCCTTCCEEEEEEEECSSCE----EEEEEEECCB
T ss_pred             EEEE--CC--CEEEEEECcCCHHHCEEEEEEEEECCcE----EEEEEEEEEe
Confidence            4431  11  3578999999999999999999999966    8888888775

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=231.71  Aligned_cols=264  Identities=21%  Similarity=0.344  Sum_probs=174.5

Q ss_pred             EEEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec---ccCcceEEEeec
Q psy15235         25 ITYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA---ILESGYVQSSLF   99 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~G~Y~C~~~~   99 (323)
                      +..+.+..+.+|++++|.|.+  .|.+.++|+++|..+...    +.............|.|.++   .|+|.|+|.+.+
T Consensus        10 ~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~----~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n   85 (304)
T 2yd9_A           10 IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ----RFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN   85 (304)
T ss_dssp             EECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT----TEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEEC
T ss_pred             eecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC----ceEEEEecCCCceEEEEecccccCCCeEEEEEEEC
Confidence            345677889999999999995  466799999999887543    22211112223366777766   459999999998


Q ss_pred             cCCcccee---------------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-e
Q psy15235        100 IPRMNAIT---------------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-Q  163 (323)
Q Consensus       100 ~~~~~~~~---------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~  163 (323)
                      ..+.....               +.+...+....+..|+.+.|.|.+.+.+   .+.+.|++++..+..... ..++. .
T Consensus        86 ~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p---~~~v~W~k~~~~~~~~~~-~~~~~~~  161 (304)
T 2yd9_A           86 SVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP---DPEITWFKDFLPVDPSAS-NGRIKQL  161 (304)
T ss_dssp             SSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSS---CCEEEEEETTEECCGGGG-TTSEEEC
T ss_pred             CCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCC---CCeEEEEECCEECcCCCC-cceEEeC
Confidence            76653222               2222244445577899999999999988   689999999988765211 12332 4


Q ss_pred             ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE---ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEE
Q psy15235        164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI---MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEW  239 (323)
Q Consensus       164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~---~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W  239 (323)
                      ....|.|.+++.+|+|.|+|.+ .|..+... .....+.|.   .+|.+. .+....+.+|+.+.|.|.+.|+|.|.+.|
T Consensus       162 ~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~-~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W  239 (304)
T 2yd9_A          162 RSGALQIESSEETDQGKYECVA-TNSAGVRY-SSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW  239 (304)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEE-EETTEEEE-CCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEE
T ss_pred             CCeEEEEccCCcccCEEEEEEE-EeCCCCEE-eccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEE
Confidence            4568999999999999999999 66633221 112344443   356555 33455688999999999999999999999


Q ss_pred             EECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235        240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDR  313 (323)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~  313 (323)
                      ++++..+..... ..        .....|.|.++  +|+|.|+|.|.|..|.    ....+.|.|.+.+....+
T Consensus       240 ~~~~~~l~~~~~-~~--------~~~~~L~i~~~--~d~G~Y~C~a~N~~G~----~~~~~~l~V~~~~~~~~~  298 (304)
T 2yd9_A          240 MQGAEDLTPEDD-MP--------VGRNVLELTDV--KDSANYTCVAMSSLGV----IEAVAQITVKSLPKAGTK  298 (304)
T ss_dssp             EETTEECSCSSS-CC--------BSEEEEEECSC--CSCEEEEEEEEETTEE----EEEEEEEC----------
T ss_pred             EECCEECCCccc-cc--------CCcEEEEEccc--ccCEEEEEEEEeCCCc----EEEEEEEEEecCcccccc
Confidence            999988754321 11        12445666665  6899999999999966    888999999888766543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=231.82  Aligned_cols=262  Identities=18%  Similarity=0.283  Sum_probs=185.1

Q ss_pred             EeeceEEecCCcEEEEEEecc-CceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCC
Q psy15235         27 YFGDTEIMEGAPINISCILTI-FEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPR  102 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~  102 (323)
                      .+.++.+.+|++++|.|.+.+ ++.+.|++ +|..+...     ..+..........|.|.+++.  +|.|+|.+.+..+
T Consensus        10 ~~~~~~v~~G~~v~l~C~~~~~p~~v~W~~~~g~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g   84 (291)
T 2wim_A           10 SLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST-----QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG   84 (291)
T ss_dssp             SCSEEEEETTCCEEEEEEEESCCSEEECBCTTCCBCCCB-----TTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             eccceEecCCCcEEEEEEEeCCCCceEEECCCCcCccCC-----CcEEEecCCCEEEEEEccCCcccCEEEEEEEecccC
Confidence            346678999999999999543 34899999 66655443     112223334456677776654  9999999988765


Q ss_pred             ccc-eeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEee
Q psy15235        103 MNA-ITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRK  172 (323)
Q Consensus       103 ~~~-~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~  172 (323)
                      ... ....+.+        .+....+.+|+.+.|.|.+.+.+   .+.+.|++++..+..  ....++. .....|.|.+
T Consensus        85 ~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~  159 (291)
T 2wim_A           85 QTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP---APAVSWLYHNEEVTT--ISDNRFAMLANNNLQILN  159 (291)
T ss_dssp             CEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSS---CCEEEEECC----CB--CCCSSEEECTTSCEEETT
T ss_pred             ceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCC---CCEEEEEECCccccc--cCCceEEEccCCCEEEEe
Confidence            531 1112221        33445578899999999999887   689999999887653  1133443 4456799999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeec---eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS  249 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~  249 (323)
                      +..+|+|.|+|.+ .+..+.......+.+.+..+|.+..+.   ...+.+|+.+.|.|.+.|+|.+.+.|++++..+...
T Consensus       160 v~~~d~G~Y~C~~-~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  238 (291)
T 2wim_A          160 INKSDEGIYRCEG-RVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN  238 (291)
T ss_dssp             CCGGGCEEEEEEE-EETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCT
T ss_pred             cchhhCEEEEEEE-EECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCC
Confidence            9999999999999 665433334455677777777665333   345678999999999999999999999999987644


Q ss_pred             CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                       .++.+..      ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.+.+..
T Consensus       239 -~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~----~~~~~~l~v~~~~~~  288 (291)
T 2wim_A          239 -EKYILKG------SNTELTVRNIINSDGGPYVCRATNKAGE----DEKQAFLQVFVQHHH  288 (291)
T ss_dssp             -TTEEECS------TTCEEEEESCCSTTCEEEEEEEEETTEE----EEEEEEEEC------
T ss_pred             -ccEEEcC------CccEEEEeeCCcccCEEEEEEEEECCCc----eeeeEEEEEEEeccc
Confidence             3333321      3578999999999999999999999966    888999988877654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=5.3e-33  Score=236.90  Aligned_cols=249  Identities=19%  Similarity=0.280  Sum_probs=183.1

Q ss_pred             ceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccce
Q psy15235         30 DTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAI  106 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~~  106 (323)
                      .+.+.+|+.+.|.|..   .+.+.+.|++++..+...    ...+ .....+.+.|......|+|.|+|.+.+..+....
T Consensus       111 ~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~  185 (384)
T 3kld_A          111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD----NRRF-VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKV  185 (384)
T ss_dssp             CEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCS----SSEE-ECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEE
T ss_pred             ceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEee----ccEE-EEcCCCcEEEeecCHHHCceEEEEEeccccccee
Confidence            4678899999999973   356799999998765432    1111 1222344444444445599999999986543211


Q ss_pred             ------------------eeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEEecee
Q psy15235        107 ------------------TGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLTQSKD  166 (323)
Q Consensus       107 ------------------~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~~~~  166 (323)
                                        .+.+.+ .+....+.+|+.+.|.|.+.+.|   .+.+.|+++ +..+..    ..+......
T Consensus       186 ~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P---~p~i~W~k~~~~~~~~----~~~~~~~~~  258 (384)
T 3kld_A          186 LGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP---VPTILWRRADGKPIAR----KARRHKSNG  258 (384)
T ss_dssp             ECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEES---CCEEEEEETTCCCCCT----TCEECTTSC
T ss_pred             eCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecC---CCcEEEEeCCCccccc----cceecCCCc
Confidence                              112222 34445577899999999999988   789999995 445543    223334566


Q ss_pred             EEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCee
Q psy15235        167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT  245 (323)
Q Consensus       167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~  245 (323)
                      .|.|.+++.+|+|.|+|.| .|..+  .......|.|..+|.+. .+....+..|+.+.|.|.+.|.|.|.+.|+++|..
T Consensus       259 ~L~I~~v~~~D~G~Y~C~a-~N~~G--~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~  335 (384)
T 3kld_A          259 ILEIPNFQQEDAGSYECVA-ENSRG--KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP  335 (384)
T ss_dssp             EEEECSCCGGGCEEEEEEE-EETTE--EEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEE
T ss_pred             EEEECCCChhhCEEEEEEE-EcCCC--eEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEE
Confidence            8999999999999999999 77733  34556677887777654 45567788999999999999999999999999998


Q ss_pred             eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      +.. ..++.+.        ..+|.|.++..+|+|.|+|.|.|..|.    ....+.|.|..
T Consensus       336 l~~-~~~~~~~--------~~~L~i~~v~~~D~G~Y~C~A~N~~G~----~~~~a~L~V~~  383 (384)
T 3kld_A          336 LLT-RDRIQIE--------QGTLNITIVNLSDAGMYQCVAENKHGV----IFSSAELSVIA  383 (384)
T ss_dssp             CCC-BTTEEEE--------TTEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEEEEC-
T ss_pred             CCC-CccEEEe--------CCEEEEeecChhhCEEEEEEEEeCCce----EEeceEEEEec
Confidence            864 3444444        468999999999999999999999966    78888888764

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=3.2e-33  Score=239.84  Aligned_cols=257  Identities=22%  Similarity=0.314  Sum_probs=189.3

Q ss_pred             eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc-
Q psy15235         28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN-  104 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~-  104 (323)
                      +....+.+|+++.|.|.+  .+.+.+.|+++|..+..........   ....+.+.|......|+|.|+|.+.+..+.. 
T Consensus       128 ~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~  204 (403)
T 3laf_A          128 TESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVV---VLPSGALQISRLQPGDSGVYRCSARNPASTRT  204 (403)
T ss_dssp             CCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEE---ECTTSCEEECSCCGGGCEEEEEEEECSSCCCB
T ss_pred             CCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEE---EcCCceEEEcccccccCEEEEEEEEcCCCcee
Confidence            345678899999999994  4667999999998875431111111   1123334444344455999999998865442 


Q ss_pred             --ceeee------------eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEE
Q psy15235        105 --AITGN------------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSIT  169 (323)
Q Consensus       105 --~~~~~------------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~  169 (323)
                        .....            +...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+...   ..++. .....|.
T Consensus       205 ~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~~~~~~~~---~~~~~~~~~~~L~  278 (403)
T 3laf_A          205 GNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYP---PPSFTWLRGEEVIQLR---SKKYSLLGGSNLL  278 (403)
T ss_dssp             CCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEES---CCEEEEEETTEECCCS---SSSEEEETTTEEE
T ss_pred             ccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCC---CCeEEEEECCeeccCC---CceEEECCccEEE
Confidence              11111            11133344577899999999999987   6799999999887641   22232 4556899


Q ss_pred             EeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec
Q psy15235        170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR  248 (323)
Q Consensus       170 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~  248 (323)
                      |.++..+|+|.|+|.+ .|..  +.....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..
T Consensus       279 i~~~~~~d~G~Y~C~a-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~  355 (403)
T 3laf_A          279 ISNVTDDDSGTYTCVV-TYKN--ENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP  355 (403)
T ss_dssp             ECSCCGGGCEEEEEEE-EETT--EEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCC
T ss_pred             EeCCCHHHCEEEEEEE-EcCC--CceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCC
Confidence            9999999999999999 6663  345677788888888665 44456678899999999999999999999999988764


Q ss_pred             cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235        249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      . .+..+.       ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.++|
T Consensus       356 ~-~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~~P~  403 (403)
T 3laf_A          356 S-DYFQIV-------GGSNLRILGVVKSDEGFYQCVAENEAGN----AQSSAQLIVPKPA  403 (403)
T ss_dssp             S-SSEEEE-------TTTEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEEECCCC-
T ss_pred             C-CcEEEe-------cCccEEEeccccccCEEEEEEEEcCCce----EEEEEEEEEeCCC
Confidence            4 333333       3678999999999999999999999966    8888999888754

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=100.00  E-value=6.4e-33  Score=229.98  Aligned_cols=266  Identities=14%  Similarity=0.185  Sum_probs=181.6

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc--Cc-----eEEEEEcCccceeec----------cCcceEEEee---eeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI--FE-----QVKWQLNGRNINQSS----------VDSGFAATAN---LTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~--~~-----~v~W~~~g~~~~~~~----------~~~~~~~~~~---~~~~~~~l   82 (323)
                      ..+..|..+.+..|++|+|.|.+..  .+     .++|+|+|.......          ...+..+...   ....+.+|
T Consensus         2 Vvv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL   81 (313)
T 4fqp_A            2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASL   81 (313)
T ss_dssp             CEEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCE
T ss_pred             eEEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEE
Confidence            3456677888999999999999542  22     589999876432210          0011111100   11233456


Q ss_pred             EEeecc--cCcceEEEeecc-CCccceeeeeee--CCcee------EEecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235         83 SIHEAI--LESGYVQSSLFI-PRMNAITGNYDI--EPKYK------VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI  151 (323)
Q Consensus        83 ~i~~~~--~~G~Y~C~~~~~-~~~~~~~~~~~~--~~~~~------~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~  151 (323)
                      .|.+++  |+|.|+|.+.+. .+.......+.+  .|...      .+..++.+.+.|.+.+..|  .+.+.|++++..+
T Consensus        82 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P--~~~i~W~~~~~~~  159 (313)
T 4fqp_A           82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRP--PAQITWHSDLGGM  159 (313)
T ss_dssp             EECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBS--CCEEEEEETTCCE
T ss_pred             EECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccC--CcEEEeecCCccc
Confidence            666655  599999988543 233222222222  22222      2445788889998764433  6899999998876


Q ss_pred             cccccccCcEE-------eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeee--eceeEEeeCCe
Q psy15235        152 TEATELSGRLT-------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKL--VETLTVIEGEK  222 (323)
Q Consensus       152 ~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~g~~  222 (323)
                      ..    ..+..       .....|.|.+...+|+|.|+|.+ .|..+.......+.|.|..+|.+.+  .....+.+|+.
T Consensus       160 ~~----~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a-~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~  234 (313)
T 4fqp_A          160 PN----TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKV-EHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNE  234 (313)
T ss_dssp             EE----EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEE-ECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCC
T ss_pred             cc----cceeeeecccccccceeeeecccccccCeeEEEEE-EccCcCccceeeeecccccCCccccccccceeecCCCe
Confidence            54    11111       22346888889999999999999 7776565666777788888887653  33445667899


Q ss_pred             EEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        223 LRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       223 ~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                      ++|.|.+.|+|.| .+.|++++..+...   ...        .+.+|.|.+++.+|+|.|+|.|.|..|.    ....+.
T Consensus       235 v~l~C~~~g~P~p~~v~W~~~~~~l~~~---~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~  299 (313)
T 4fqp_A          235 ATLTCDARSNPEPTGYNWSTTMGPLPPF---AVA--------QGAQLLIRPVDKPINTTLICNVTNALGA----RQAELT  299 (313)
T ss_dssp             EEEEEEEEEESCCCEEEEEETTBSCCTT---EEE--------ETTEEEECCCSSCCEEEEEEEEECSSCE----EEEEEE
T ss_pred             EEEEEEecCCCCCcEEEEEECCEECCCc---eEE--------eCCEEEECcCChhhCEEEEEEEEeCCCc----EEEEEE
Confidence            9999999999998 69999999877432   111        2578999999999999999999999965    888899


Q ss_pred             EEEcceecC
Q psy15235        302 VRVKGKSFG  310 (323)
Q Consensus       302 l~v~~~~~~  310 (323)
                      |.|.++|+.
T Consensus       300 l~V~~~PP~  308 (313)
T 4fqp_A          300 VQVKEGPPH  308 (313)
T ss_dssp             EEEECCC--
T ss_pred             EEEEeCCCC
Confidence            999887764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=228.86  Aligned_cols=260  Identities=18%  Similarity=0.200  Sum_probs=178.2

Q ss_pred             ceEEEeeceEEecCCcEEEEEEec---cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEe
Q psy15235         23 GKITYFGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSS   97 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~   97 (323)
                      +.+..+.+..+.+|++++|.|.+.   +.+.+.|+++|..+....   .  +  ....+...|.|.+++.  +|.|+|.+
T Consensus         8 P~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~---~--~--~~~~~~~~L~i~~~~~~d~G~Y~C~~   80 (317)
T 2y25_A            8 PHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE---K--H--DFKDGICTLLITEFSKKDAGIYEVIL   80 (317)
T ss_dssp             CEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSC---C---------CCEEEEETTCCSTTCSCEEEEE
T ss_pred             CcEeeeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCC---c--E--EEECCeEEEEEccCCcccCeEEEEEE
Confidence            344455568899999999999943   457999999998876531   1  1  1124456777776655  99999999


Q ss_pred             eccCCccceeeeeeeC--------CceeEEecCCcEEEEEEeec---------CCCCCCceEEEEECCeeccccccccCc
Q psy15235         98 LFIPRMNAITGNYDIE--------PKYKVFEYRVPFTLKCNVTS---------PPPGDDYQIVWYKGNKSITEATELSGR  160 (323)
Q Consensus        98 ~~~~~~~~~~~~~~~~--------~~~~~~~~g~~v~l~C~~~~---------~~~~~~~~i~W~~~~~~~~~~~~~~~~  160 (323)
                      .+..+.......+.+.        +....+..|+.+.|.|.+.+         ..|  .+.+.|++++..+..    ..+
T Consensus        81 ~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p--~~~i~W~~~~~~~~~----~~~  154 (317)
T 2y25_A           81 KDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVE--DLKVNWSHNGSAIRY----SDR  154 (317)
T ss_dssp             ESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCS--SCEEEEEESSSBCCC----CSS
T ss_pred             ECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCC--CcEEEEEECCEECCC----CCC
Confidence            8877654333333221        01111234555555555544         333  689999999998876    444


Q ss_pred             EE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe--------------------cceee--eece
Q psy15235        161 LT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM--------------------KPTAK--LVET  214 (323)
Q Consensus       161 ~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~--------------------~p~~~--~~~~  214 (323)
                      +.    .....|.|.+++.+|+|.|+|.+ .|..+  .....+.+.+..                    +|.+.  .+..
T Consensus       155 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  231 (317)
T 2y25_A          155 VKTGVTGEQIWLQINEPTPNDKGKYVMEL-FDGKT--GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV  231 (317)
T ss_dssp             EEEEECSSEEEEEEESCCGGGCEEEEEEE-ECSSC--EEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSE
T ss_pred             eEEeccCCEEEEEECcCCcccCeeEEEEE-EeCCc--eEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCcc
Confidence            43    34456999999999999999999 67632  233344443321                    12222  2335


Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ  294 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~  294 (323)
                      ..+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++.+..  .. .....|.|.+++.+|+|.|+|.|.|..|.   
T Consensus       232 ~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~--~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~---  304 (317)
T 2y25_A          232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD-DHCNLKF--EA-GRTAYFTINGVSTADSGKYGLVVKNKYGS---  304 (317)
T ss_dssp             EEEETTSBBCEEEEEECSSCCEEEEEESSSEECCC-SSEEECC--BT-TTEEEEEEBSCCSTTCEEEEEEEEETTEE---
T ss_pred             EEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCC-CcEEEEE--cC-CCEEEEEECCCCHHHCEEEEEEEEeCCCe---
Confidence            67889999999999999999999999999888643 3444431  11 12469999999999999999999999976   


Q ss_pred             CceeEEEEEEcc
Q psy15235        295 PNEAFVYVRVKG  306 (323)
Q Consensus       295 ~~~~~~~l~v~~  306 (323)
                       ....+.|.|..
T Consensus       305 -~~~~~~l~V~~  315 (317)
T 2y25_A          305 -ETSDFTVSVFI  315 (317)
T ss_dssp             -EEEEEEEEEEC
T ss_pred             -EEEEEEEEEEc
Confidence             77788887764

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=221.71  Aligned_cols=248  Identities=10%  Similarity=0.089  Sum_probs=178.2

Q ss_pred             ceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCcc
Q psy15235         30 DTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRMN  104 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~~  104 (323)
                      .+.+.+|+.+.|.|..   .|.+.++|+|+|..+...   .+  +..........|.|.+++.  +|.|+|.+.+..+..
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~---~~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~   84 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDS---PR--LEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA   84 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTC---TT--EEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCC
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCC---CC--EEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcE
Confidence            4668899999999983   477899999999887643   11  2223345556788877655  999999998865543


Q ss_pred             c-e------------------eeeeeeCC-ceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccccCcEE-
Q psy15235        105 A-I------------------TGNYDIEP-KYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLT-  162 (323)
Q Consensus       105 ~-~------------------~~~~~~~~-~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-  162 (323)
                      . .                  .|.+...+ ....+.+|+.+.|.|.+. +.+   .+.+.|++++..+..    ..++. 
T Consensus        85 ~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p---~~~v~W~~~~~~i~~----~~~~~~  157 (312)
T 2y23_A           85 SSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSG---NAKVNYIFNEKEIFE----GPKYKM  157 (312)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCS---SCEEEEEETTEEECS----SSSCEE
T ss_pred             EEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCC---CCEEEEEECCEECee----CCcEEE
Confidence            2 1                  11111211 144577899999999998 666   789999999998876    34333 


Q ss_pred             -----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE---------------------ecceeeeeceeE
Q psy15235        163 -----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI---------------------MKPTAKLVETLT  216 (323)
Q Consensus       163 -----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~  216 (323)
                           .....|.|.+++.+|+|.|+|.+ .+.    .......+.+.                     .+|.+..+....
T Consensus       158 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  232 (312)
T 2y23_A          158 HIDRNTGIIEMFMEKLQDEDEGTYTFQL-QDG----KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE  232 (312)
T ss_dssp             EEETTTTEEEEEESCCCGGGCEEEEEEE-ESS----SCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEE
T ss_pred             EEccCCCEEEEEEccCCcccCEeEEEEE-EeC----CceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEE
Confidence                 23355999999999999999999 543    12333333331                     124443333467


Q ss_pred             EeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCC
Q psy15235        217 VIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQP  295 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~  295 (323)
                      +.+|+.+.|.|.+.+.|++ .+.|++++..+... .++.+..      ....|.|.+++.+|+|.|+|.|.|..|.    
T Consensus       233 v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~-~~~~~~~------~~~~L~I~~v~~~d~G~Y~C~a~N~~G~----  301 (312)
T 2y23_A          233 VTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFKD------GICTLLITEFSKKDAGIYEVILKDDRGK----  301 (312)
T ss_dssp             EETTTEEEEEEEEESCCSSCEEEEEETTEEEEEE-CCC----------CEEEEEECSCSGGGCEEEEEEEESTTCC----
T ss_pred             EeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCC-CcEEEEC------CEEEEEECcCCHHHCEEEEEEEEcCCCc----
Confidence            8899999999999999988 99999999988643 3333221      3579999999999999999999999966    


Q ss_pred             ceeEEEEEEc
Q psy15235        296 NEAFVYVRVK  305 (323)
Q Consensus       296 ~~~~~~l~v~  305 (323)
                      ....+.|.++
T Consensus       302 ~~~~~~l~i~  311 (312)
T 2y23_A          302 DKSRLKLVDE  311 (312)
T ss_dssp             EEEEEEECSC
T ss_pred             eeeeeEEEec
Confidence            7777777654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=4.1e-32  Score=232.91  Aligned_cols=272  Identities=19%  Similarity=0.255  Sum_probs=191.0

Q ss_pred             hccCCceEEEeeceEEecCCcEEEEEEec---cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEe-----eccc
Q psy15235         18 SISADGKITYFGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH-----EAIL   89 (323)
Q Consensus        18 ~~~~~~~i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~-----~~~~   89 (323)
                      .......+..|.++.+.+|++++|.|.+.   +.+.+.|+|+|..+.... ......   ..++.+.+...     ...|
T Consensus        18 ~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~-~~~~~~---~~~~~l~i~~~~~~~~~~~D   93 (403)
T 3laf_A           18 GRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGM-DDRKQQ---LPNGSLLIQNILHSRHHKPD   93 (403)
T ss_dssp             -CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTS-CTTEEE---CTTSCEEECSCCCBTTBCSS
T ss_pred             CceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCC-cccEEE---ecCCcEEEeeeeccCCCCCc
Confidence            34455555677888999999999999953   457899999998876431 111111   11333322221     2336


Q ss_pred             CcceEEEeeccCCcc----cee------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC
Q psy15235         90 ESGYVQSSLFIPRMN----AIT------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG  159 (323)
Q Consensus        90 ~G~Y~C~~~~~~~~~----~~~------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~  159 (323)
                      +|.|+|.+.+.....    ...      +.+...+....+.+|+++.|.|.+.+.+   .+.+.|++++..+..... ..
T Consensus        94 ~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~-~~  169 (403)
T 3laf_A           94 EGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDP---MPTIHWQKNQQDLNPIPG-DS  169 (403)
T ss_dssp             CEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSS---CCEEEEEESSSBCCCCTT-CC
T ss_pred             ceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccC---CCeEEEEECCEeccccCC-ce
Confidence            999999998543221    111      1111234445678899999999998887   679999999987753111 22


Q ss_pred             cEE-eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEeccee-------eeeceeEEeeCCeEEEEEEEec
Q psy15235        160 RLT-QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA-------KLVETLTVIEGEKLRLECLVVG  231 (323)
Q Consensus       160 ~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~-------~~~~~~~~~~g~~~~l~C~~~g  231 (323)
                      +.. .....|.|.++..+|+|.|+|.+ .+..+. .......+.|...|.+       ..+....+.+|+.+.|.|.+.+
T Consensus       170 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~n~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  247 (403)
T 3laf_A          170 RVVVLPSGALQISRLQPGDSGVYRCSA-RNPAST-RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSG  247 (403)
T ss_dssp             SEEECTTSCEEECSCCGGGCEEEEEEE-ECSSCC-CBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEE
T ss_pred             EEEEcCCceEEEcccccccCEEEEEEE-EcCCCc-eeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCC
Confidence            222 45668999999999999999999 665332 2334566777665432       1334566789999999999999


Q ss_pred             CCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        232 SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       232 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      +|.+.+.|++++..+.....++...       ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|..+|..
T Consensus       248 ~p~~~~~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~  315 (403)
T 3laf_A          248 YPPPSFTWLRGEEVIQLRSKKYSLL-------GGSNLLISNVTDDDSGTYTCVVTYKNEN----ISASAELTVLVPPWF  315 (403)
T ss_dssp             ESCCEEEEEETTEECCCSSSSEEEE-------TTTEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEEEEEEE
T ss_pred             CCCCeEEEEECCeeccCCCceEEEC-------CccEEEEeCCCHHHCEEEEEEEEcCCCc----eEEEEEEEEECCCcE
Confidence            9999999999999887655555554       3678999999999999999999999865    677778888766543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=216.73  Aligned_cols=239  Identities=19%  Similarity=0.278  Sum_probs=174.3

Q ss_pred             EeeceEEecCCcEEEEEEec--cCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCc
Q psy15235         27 YFGDTEIMEGAPINISCILT--IFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRM  103 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~--~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~  103 (323)
                      .+....+.+|+.+.|.|.+.  +.+ .++|+++|..+...             ...+.|......|+|.|+|.+.+....
T Consensus         7 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------------~~~l~i~~~~~~d~G~Y~C~~~~~~~s   73 (262)
T 3rjd_A            7 QPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------------TPSYRITSASVNDSGEYRCQRGLSGRS   73 (262)
T ss_dssp             SSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------------SSEEEESSCCGGGCEEEEEEESSSCCC
T ss_pred             CCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------------CCeEEEecCCcccCeEEEEEEecCCcc
Confidence            34557899999999999953  445 89999999877653             333333334445599999999876655


Q ss_pred             cceeeeeee-----CCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCC
Q psy15235        104 NAITGNYDI-----EPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDD  177 (323)
Q Consensus       104 ~~~~~~~~~-----~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  177 (323)
                      ......+..     .+....+.+|+.+.|.|.+ .+.+   .+.+.|++++..+..        ......|.|.+++.+|
T Consensus        74 ~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p---~~~v~W~~~g~~~~~--------~~~~~~l~i~~~~~~d  142 (262)
T 3rjd_A           74 DPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKL---VYNVLYYRNGKAFKF--------FHWNSNLTILKTNISH  142 (262)
T ss_dssp             CCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCC---CEEEEEEETTEEEEE--------EEECCCEEESSCCGGG
T ss_pred             ccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCC---CceEEEEECCccccc--------cCCCCeEEEEECChhh
Confidence            433322221     2333446789999999999 4555   789999999988754        1235679999999999


Q ss_pred             CeeEEEEEEcCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCC-Cc----EEEEECCeeeecc
Q psy15235        178 AGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPP-PT----VEWRIGNDTYFRS  249 (323)
Q Consensus       178 ~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~----~~W~~~~~~~~~~  249 (323)
                      +|.|+|.+ .+..  ......+.|.|..   +|.+.......+.+|+.+.|.|.+.+.|. +.    +.|++++..+...
T Consensus       143 ~G~Y~C~~-~n~~--~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~  219 (262)
T 3rjd_A          143 NGTYHCSG-MGKH--RYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR  219 (262)
T ss_dssp             CEEEEEEE-ESSS--EEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE
T ss_pred             CEEEEEEE-eCCC--CccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc
Confidence            99999999 6763  3455566777764   55666555667889999999999999875 43    7899999877532


Q ss_pred             CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      .             ....|+|.++..+|+|.|+|.|.|..|.. ...+..+.|.|++
T Consensus       220 ~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~-~~~s~~~~l~V~G  262 (262)
T 3rjd_A          220 N-------------TSSEYQILTARREDSGLYWCEAATEDGNV-LKRSPELELQVLG  262 (262)
T ss_dssp             E-------------SCCEEEESSCCGGGCEEEEEEEEETTSSC-EEECCCEEECEEC
T ss_pred             C-------------CCceEEEEEechhhCeEEEEEEEcccCce-EEecCCeEEEEeC
Confidence            1             35789999999999999999999999751 1234556666543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=100.00  E-value=2.7e-33  Score=231.71  Aligned_cols=265  Identities=12%  Similarity=0.190  Sum_probs=179.7

Q ss_pred             eeceEEecCCcEEEEEEec---cCceEEEEEcCccceeec-------------cCcceEEEeeeeCCeEEEEEeecc--c
Q psy15235         28 FGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSS-------------VDSGFAATANLTEDNFKYSIHEAI--L   89 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~--~   89 (323)
                      +..+.+.+|++++|.|.+.   +.+.++|+|++.......             ...++....+...+...|.|.+++  |
T Consensus         6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD   85 (308)
T ss_dssp             CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred             CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence            4467899999999999843   335799999765433210             001111111222334556676665  4


Q ss_pred             CcceEEEeeccCCc-cceeeeee--e--------CCceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccc
Q psy15235         90 ESGYVQSSLFIPRM-NAITGNYD--I--------EPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATEL  157 (323)
Q Consensus        90 ~G~Y~C~~~~~~~~-~~~~~~~~--~--------~~~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~  157 (323)
                      +|.|+|.+.+.... ......+.  .        .+.......|+.+.|.|.+. +.|   .+.|.|++++..+......
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P---~~~i~W~~~~~~~~~~~~~  162 (308)
T 4fom_A           86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKP---VAHIDWEGDLGEMESTTTS  162 (308)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBS---CCEEEECCCSSBCCEEEEE
T ss_pred             CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcC---CceEEEEECCcccccccce
Confidence            99999999775332 21111111  1        22222344688999999864 556   7899999999877541110


Q ss_pred             -cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeee--eceeEEeeCCeEEEEEEEecCCC
Q psy15235        158 -SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKL--VETLTVIEGEKLRLECLVVGSPP  234 (323)
Q Consensus       158 -~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~g~~~~l~C~~~g~p~  234 (323)
                       ..........|.|..+..+|+|.|+|.+ .|..+.......+.|.|..+|.+..  .....+..|+.++|.|.+.|+|+
T Consensus       163 ~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a-~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~  241 (308)
T 4fom_A          163 FPNETATIISQYKLFPTRFARGRRITCVV-KHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPP  241 (308)
T ss_dssp             CTTSCEEEEEEEEECCCGGGTTCEEEEEE-ECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESC
T ss_pred             eeeecccccccceEEeeeecCCccEEEEE-EccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCC
Confidence             0111133457899999999999999999 7776555566677777887776652  23455667899999999999998


Q ss_pred             C-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        235 P-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       235 ~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      | .+.|++++..+...   ....       ....|.|.+++.+|+|.|+|.|.|..|.    .+..+.|.|.++|..
T Consensus       242 p~~v~W~k~~~~~~~~---~~~~-------~~~~l~i~~v~~~d~G~Y~C~A~N~~G~----~~~~~~l~V~~~P~~  304 (308)
T 4fom_A          242 PFKSVWSRLDGQWPDG---LLAS-------DNTLHFVHPLTFNYSGVYICKVTNSLGQ----RSDQKVIYISDPPHH  304 (308)
T ss_dssp             EEEEECCBSSSCCCSS---CBCS-------TTEEECCSCCCSCCCSEEEEEEEETTEE----EEEEEECCEECCC--
T ss_pred             CcEEEEEECCeECCCc---EEEc-------CCeEEEECCCChhhCEEEEEEEEeCCCc----EEEEEEEEEEcCCCC
Confidence            8 69999998876422   1111       3566778999999999999999999976    888899999888753

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=100.00  E-value=6.8e-32  Score=221.34  Aligned_cols=250  Identities=14%  Similarity=0.139  Sum_probs=174.7

Q ss_pred             eeceEEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCccc
Q psy15235         28 FGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMNA  105 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~~  105 (323)
                      +....+.+|++++|.|.+.+  .++|++++..+...          ....  ..|.|.+++  |+|.|+|.+.+ .....
T Consensus        19 ~~~~~v~~G~~v~l~C~~~~--~i~W~~~~~~~~~~----------~~~~--~~L~i~~~~~~d~G~Y~C~~~n-g~~~~   83 (290)
T 2o26_X           19 QSELIVEAGDTLSLTCIDPD--FVRWTFKTYFNEMV----------ENKK--NEWIQEKAEATRTGTYTCSNSN-GLTSS   83 (290)
T ss_dssp             SSEEEEETTSCEEEEEECTT--EEEEEEECSSSCEE----------EECS--SEEEETTCCGGGCEEEEEEESS-SCEEE
T ss_pred             CCeEEEcCCCcEEEEECCCC--cEEEecCCcceeee----------cCCC--ceEEEeccCHHhCeEEEEEeeC-CccEE
Confidence            45677999999999999776  99999999877211          1112  455565554  59999999988 22222


Q ss_pred             eeeeee------eCCceeEEecCCcEEEEEEeecCCCCCC-ceEEEE-ECCeeccccccccCcEE-eceeEEEEeeeecC
Q psy15235        106 ITGNYD------IEPKYKVFEYRVPFTLKCNVTSPPPGDD-YQIVWY-KGNKSITEATELSGRLT-QSKDSITIRKTTVD  176 (323)
Q Consensus       106 ~~~~~~------~~~~~~~~~~g~~v~l~C~~~~~~~~~~-~~i~W~-~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~  176 (323)
                      ....+.      ..+....+.+|+.+.|.|.+.+ +   . +.+.|+ ++|..+..    ..++. .....|.|.++..+
T Consensus        84 ~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p---~~~~v~W~~~~g~~l~~----~~~~~~~~~~~L~i~~v~~~  155 (290)
T 2o26_X           84 IYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-P---QVSQYSLIECDGKSLPT----DLTFVPNPKAGITIKNVKRA  155 (290)
T ss_dssp             EEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-C---SCEEEEEEETTSCCCCT----TCEEEEETTTEEEEESCCGG
T ss_pred             EEEEEeCCCcccccccceEEecCCeEEEeCcCCC-C---CCceEEEEeCCCcCCCC----CCceeeCCCCCEEEecccHH
Confidence            222111      1233345678999999999985 5   5 899995 57777765    44544 44568999999999


Q ss_pred             CCe-eEEEEEEcCCCCCCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecCCCCc-EEEEECCeee---
Q psy15235        177 DAG-QYSCRLIDPKSTNTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTY---  246 (323)
Q Consensus       177 d~G-~y~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~---  246 (323)
                      |+| .|+|.+ .|.. ....+..+.|.|.    .+|.+. .+....+.+|+.+.|.|.+.|.|.|. +.|++++..+   
T Consensus       156 d~G~~Y~C~a-~n~~-~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~  233 (290)
T 2o26_X          156 YHRLCVRCAA-QRDG-TWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHI  233 (290)
T ss_dssp             GTTCEEEEEE-EETT-EEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEEC
T ss_pred             HCCCEEEEEE-EECC-ceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccc
Confidence            999 999999 6652 2223345667766    466665 33455788999999999999999996 9999998773   


Q ss_pred             -eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235        247 -FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       247 -~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                       ..........  .......+.|+|.+++.+|+|.|+|.|.|..|.    ....+.|.|.++|
T Consensus       234 ~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~~P  290 (290)
T 2o26_X          234 AQVKHNSWHRG--DFNYERQETLTISSARVDDSGVFMCYANNTFGS----ANVTTTLKVVEKG  290 (290)
T ss_dssp             CCEECCEEEEE--TTEEEEEEEEEESSCCSSSCEEEEEEEECSSCE----EEEEEEECC----
T ss_pred             eeecccccccC--ceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCc----EEEEEEEEEEeCC
Confidence             2111111100  000113678999999999999999999999966    7888888887765

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.5e-31  Score=227.77  Aligned_cols=249  Identities=21%  Similarity=0.258  Sum_probs=183.4

Q ss_pred             eceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc-
Q psy15235         29 GDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN-  104 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~-  104 (323)
                      .+..+.+|++++|.|..   .+.+.+.|++++..+... .. .... .....+.+.|......|+|.|+|.+.+..+.. 
T Consensus       109 ~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~-~~-~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~  185 (382)
T 1cs6_A          109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIP-AD-GRRF-VSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT  185 (382)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCC-CC-SSEE-ECTTTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             CceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccc-cC-ceEE-EecCceEEEEEeeCcccCeeEEEEEEEcccccc
Confidence            35678999999999983   466899999998775432 11 1111 11223344443334455999999998765211 


Q ss_pred             --------ce----------eeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEece
Q psy15235        105 --------AI----------TGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK  165 (323)
Q Consensus       105 --------~~----------~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~  165 (323)
                              .+          .|.+.. .+....+..|+.++|.|.+.+.+   .+.+.|++++..+..      ++....
T Consensus       186 ~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p---~~~i~W~~~~~~~~~------~~~~~~  256 (382)
T 1cs6_A          186 KSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNP---VPQIKWRKLDGSQTS------KWLSSE  256 (382)
T ss_dssp             EEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEES---CCEEEEEECCSCCSC------CCSBSS
T ss_pred             ceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCC---CCEEEEEECCccccc------EEecCC
Confidence                    01          222222 34455678899999999999987   689999998876542      122456


Q ss_pred             eEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCe
Q psy15235        166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND  244 (323)
Q Consensus       166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~  244 (323)
                      ..|.|.++..+|+|.|+|.+ .|..  +.......|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|+++|.
T Consensus       257 ~~L~i~~~~~~d~G~Y~C~a-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~  333 (382)
T 1cs6_A          257 PLLHIQNVDFEDEGTYECEA-ENIK--GRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ  333 (382)
T ss_dssp             SEEEECSCCGGGCEEEEEEE-EETT--EEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTE
T ss_pred             cEEEEccCChhhCEEEEEEE-EcCC--CeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCE
Confidence            78999999999999999999 6663  335667778888777655 4446678899999999999999999999999999


Q ss_pred             eeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        245 TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      .+... .++.+.        ...|+|.++..+|+|.|+|.|.|..|.    ....+.|.|.
T Consensus       334 ~~~~~-~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~  381 (382)
T 1cs6_A          334 PLASQ-NRIEVS--------GGELRFSKLVLEDSGMYQCVAENKHGT----VYASAELTVQ  381 (382)
T ss_dssp             ECCCC-SSEEEE--------TTEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEEEEE
T ss_pred             ECCCC-ceEEEE--------CCEEEECcCCcccCEEEEEEEEeCCCe----EEEEEEEEEe
Confidence            88643 444444        468999999999999999999999966    7788888775

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=100.00  E-value=3.7e-33  Score=233.47  Aligned_cols=272  Identities=15%  Similarity=0.248  Sum_probs=135.2

Q ss_pred             CceEEEeeceEEecCCcEEEEEEec---cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEee
Q psy15235         22 DGKITYFGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSL   98 (323)
Q Consensus        22 ~~~i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~   98 (323)
                      .+.+..+.+..+.+|++++|.|.+.   |.+.+.|+++|..+...    .. +  ....+.+.|......|+|.|+|.+.
T Consensus         9 ~p~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~----~~-~--~~~~~~L~i~~v~~~D~G~Y~C~a~   81 (334)
T 1ry7_B            9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS----ER-V--LVGPQRLQVLNASHEDSGAYSCRQR   81 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCc----cc-E--EeccceEEEeecccccCEEEEEEEE
Confidence            3445557778899999999999954   34799999999877653    11 1  1123334444444455999999998


Q ss_pred             ccCCccceeeeeee----------------------------------CCceeEEecCCcEEEEEEeecCCCCCCceEEE
Q psy15235         99 FIPRMNAITGNYDI----------------------------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVW  144 (323)
Q Consensus        99 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W  144 (323)
                      +. +.......+.+                                  .+....+.+|+.++|.|.+.+.+   .+.+.|
T Consensus        82 n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p---~~~v~W  157 (334)
T 1ry7_B           82 LT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNP---TPSISW  157 (334)
T ss_dssp             --------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSS---CCEEEC
T ss_pred             eC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCC---CCeEEE
Confidence            76 33211111111                                  11224577899999999999887   689999


Q ss_pred             EECCeeccccccccC-cEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec----ceee--eeceeEE
Q psy15235        145 YKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK----PTAK--LVETLTV  217 (323)
Q Consensus       145 ~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~----p~~~--~~~~~~~  217 (323)
                      ++++..+........ ........|.|.+++.+|+|.|+|.+ .|..+  .....+.|.|...    |.+.  .+....+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~  234 (334)
T 1ry7_B          158 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV-ENKFG--SIRQTYTLDVLERSPHRPILQAGLPANQTA  234 (334)
T ss_dssp             CBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEE-EETTE--EEEEEEEEEEECCCCSSCBCCTTCSCCEEE
T ss_pred             EECCEECcccccccceecccceEEEEECCCCcccCEEEEEEE-EeCCC--CEEEEEEEEEecCCCCCCceEecCCCceEE
Confidence            999988765211111 11145568999999999999999999 66633  3455666777652    3333  3456778


Q ss_pred             eeCCeEEEEEEEecCCCCcEEEEE----CCeeeeccCCe-eeeecCCC---CCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        218 IEGEKLRLECLVVGSPPPTVEWRI----GNDTYFRSQGR-IKLSEHPE---KGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~-~~~~~~~~---~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+|+.+.|.|.+.|+|.+.+.|++    +|..+...... ..+.....   .......|.|.+++.+|+|.|+|.|.|..
T Consensus       235 ~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  314 (334)
T 1ry7_B          235 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI  314 (334)
T ss_dssp             ESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESS
T ss_pred             eCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCC
Confidence            899999999999999999999999    66665433221 11110000   00123589999999999999999999999


Q ss_pred             cCCCCCceeEEEEEEcceecCc
Q psy15235        290 TRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      |.    ....+.|.|.+.++++
T Consensus       315 G~----~~~~~~l~V~~~~~~~  332 (334)
T 1ry7_B          315 GF----SHHSAWLVVLPAEEEL  332 (334)
T ss_dssp             CC----EEEEEEEEEECSCCC-
T ss_pred             Ce----EEEEEEEEEEECCCCc
Confidence            65    8889999998877654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=100.00  E-value=5.1e-33  Score=234.09  Aligned_cols=269  Identities=16%  Similarity=0.196  Sum_probs=154.0

Q ss_pred             EeeceEEecCCcEEEEEEecc-------------CceEEEEEcCcccee--ecc--CcceEEEeeeeCCeEEEEEeeccc
Q psy15235         27 YFGDTEIMEGAPINISCILTI-------------FEQVKWQLNGRNINQ--SSV--DSGFAATANLTEDNFKYSIHEAIL   89 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~~-------------~~~v~W~~~g~~~~~--~~~--~~~~~~~~~~~~~~~~l~i~~~~~   89 (323)
                      ....+.+.+|+++.|.|.+.+             .+.++|++++.....  ...  .....  .....+.+.|......|
T Consensus        13 ~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~D   90 (349)
T 4dep_C           13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENR--ISKEKDVLWFRPTLLND   90 (349)
T ss_dssp             CCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGC--EEEETTEEEESSCCGGG
T ss_pred             eeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCce--EeecCCEEEEccCChhh
Confidence            346688999999999999543             389999998853221  100  01111  12234444444444456


Q ss_pred             CcceEEEeeccCCccceeeeeee--C----------CceeEEecCCcEEEEEEe-----ecCCCCCCceEEEEECCeecc
Q psy15235         90 ESGYVQSSLFIPRMNAITGNYDI--E----------PKYKVFEYRVPFTLKCNV-----TSPPPGDDYQIVWYKGNKSIT  152 (323)
Q Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~--~----------~~~~~~~~g~~v~l~C~~-----~~~~~~~~~~i~W~~~~~~~~  152 (323)
                      +|.|+|.+.+..+.......+.+  .          +....+..|+.+.|.|.+     .+.+   .+.+.|++++..+.
T Consensus        91 ~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p---~~~v~W~k~~~~l~  167 (349)
T 4dep_C           91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSV---KPTITWYMGCYKIQ  167 (349)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTS---CCEEEEEETTEECC
T ss_pred             CEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCC---CceEEEeeCCEECC
Confidence            99999999987665543333333  1          223456789999999975     5556   78999999999886


Q ss_pred             ccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCC--CceeeeeEEEe------cceeeeecee---EEeeCC
Q psy15235        153 EATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT--PLAQADFDVIM------KPTAKLVETL---TVIEGE  221 (323)
Q Consensus       153 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~~~~l~v~~------~p~~~~~~~~---~~~~g~  221 (323)
                      .    ..++......|.|.+++.+|+|.|+|.+ .+..+...  ....+.|.|..      +|.+..+...   .+.+|+
T Consensus       168 ~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~  242 (349)
T 4dep_C          168 N----FNNVIPEGMNLSFLIALISNNGNYTCVV-TYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGE  242 (349)
T ss_dssp             S----CSSEEEETTEEEEESCCGGGCEEEEEEE-EEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--------------
T ss_pred             C----ccceeecCCEEEEeeeeecCCcEEEEEE-EEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCC
Confidence            5    4555545578999999999999999999 66532222  24555666655      4555543322   678899


Q ss_pred             eEEEEEEEe----cCCCCcEEEEECCeeeeccCCeeeeec-----CCCCCCcceeEEEeecCcCCC-eEEEEEEeecccC
Q psy15235        222 KLRLECLVV----GSPPPTVEWRIGNDTYFRSQGRIKLSE-----HPEKGTANSVLQIDEATMADR-GNYYCHGNNVATR  291 (323)
Q Consensus       222 ~~~l~C~~~----g~p~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~L~i~~v~~~d~-G~y~C~a~n~~g~  291 (323)
                      .+.|.|.+.    |.|.+.+.|++++..+.....++.+..     ...+.....+|+|.++..+|. |.|+|.|.|..|.
T Consensus       243 ~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~  322 (349)
T 4dep_C          243 ELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGE  322 (349)
T ss_dssp             --CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCE
T ss_pred             cEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCc
Confidence            999999998    568899999999988765223332210     001111356699999999999 9999999999965


Q ss_pred             CCCCceeEEEEEEcceec
Q psy15235        292 NSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       292 ~~~~~~~~~~l~v~~~~~  309 (323)
                          ....+.|.|...++
T Consensus       323 ----~~~~~~l~v~~~~p  336 (349)
T 4dep_C          323 ----VAKAAKVKQKVPAP  336 (349)
T ss_dssp             ----EEEECC--------
T ss_pred             ----EEEEEEEeeecCCC
Confidence                77888888866433

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=100.00  E-value=3.2e-32  Score=225.91  Aligned_cols=263  Identities=15%  Similarity=0.150  Sum_probs=179.7

Q ss_pred             eceEEecCCcEEEEEEec--c-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCCc
Q psy15235         29 GDTEIMEGAPINISCILT--I-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPRM  103 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~--~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~  103 (323)
                      ..+.+.+|+++.|.|.+.  + .+.++|+|+|..+..........   ....+  .|.|.++  .|+|.|+|.+.+..+.
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~---~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~   87 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRI---HQHKE--KLWFVPAKVEDSGHYYCVVRNSSYC   87 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSS---EECSS--BEECTTCCGGGCSCCEECCCSSSCC
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcE---eccCC--eEEECCCChhhCEEEEEEEeCCceE
Confidence            357789999999999843  3 56999999987544321111111   11233  4555554  4599999999987665


Q ss_pred             cceeeeeee---CCc---------eeEEecCCcEEEEEEe------ecCCCCCCceEEEEECCeeccccccccCcEEece
Q psy15235        104 NAITGNYDI---EPK---------YKVFEYRVPFTLKCNV------TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK  165 (323)
Q Consensus       104 ~~~~~~~~~---~~~---------~~~~~~g~~v~l~C~~------~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~  165 (323)
                      ......+.+   .|.         ...+..|+.+.|.|.+      .+.|   .+.+.|++++..+...   ..++....
T Consensus        88 ~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p---~~~i~W~k~~~~l~~~---~~~~~~~~  161 (315)
T 1itb_B           88 LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNE---LPKLQWYKDCKPLLLD---NIHFSGVK  161 (315)
T ss_dssp             CCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTC---CCCCEEEETTEECCCC---SSSEEEET
T ss_pred             EEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCC---CCEEEEEECCEECCCc---cceEeecC
Confidence            433333221   221         1347789999999998      6666   6899999999988641   23444556


Q ss_pred             eEEEEeeeecCCCeeEEEEEEcCCCCCCC-CceeeeeEEE-----ecceeeeece--eEEeeCCeEEEEEEEecCCCCcE
Q psy15235        166 DSITIRKTTVDDAGQYSCRLIDPKSTNTT-PLAQADFDVI-----MKPTAKLVET--LTVIEGEKLRLECLVVGSPPPTV  237 (323)
Q Consensus       166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-~~~~~~l~v~-----~~p~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~~  237 (323)
                      ..|.|.++..+|+|.|+|.+..+..+... ....+.+.+.     .+|.+..+..  ..+.+|+.+.|.|.+.|.|.|.+
T Consensus       162 ~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i  241 (315)
T 1itb_B          162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA  241 (315)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred             ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence            68999999999999999999314432211 1233333333     3566654333  46789999999999999999999


Q ss_pred             EEEECCeeeeccCC-----eeeeecCCCC--CCcceeEEEeecCcCC-CeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        238 EWRIGNDTYFRSQG-----RIKLSEHPEK--GTANSVLQIDEATMAD-RGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       238 ~W~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      .|+++|..+.....     +.........  ....+.|.|.++..+| +|.|+|.|.|..|.    ....+.|.|+.
T Consensus       242 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~----~~~~~~l~v~~  314 (315)
T 1itb_B          242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI----DAAYIQLIYPV  314 (315)
T ss_dssp             EEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCC----EEEEEEEECCC
T ss_pred             EEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCc----eeEEEEEEecC
Confidence            99999998865432     1111100000  0124589999999999 99999999999966    88888888764

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=100.00  E-value=4.6e-31  Score=216.23  Aligned_cols=254  Identities=16%  Similarity=0.178  Sum_probs=175.9

Q ss_pred             eceEEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCccce
Q psy15235         29 GDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMNAI  106 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~~~  106 (323)
                      ..+.+.+|++++|.|.+.+  .+.|++++......          ........|.|.+++  |+|.|+|.+.+..+....
T Consensus        12 ~~~~v~~G~~v~L~C~~~~--~v~W~~~~~~~~~~----------~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   79 (289)
T 3ejj_X           12 PELVVEPGETVTLRCVSNG--SVEWDGPISPYWTL----------DPESPGSTLTTRNATFKNTGTYRCTELEDPMAGST   79 (289)
T ss_dssp             SEEEECTTCCEEEEEECSS--CCEEECSCSSSSEE----------CCCSSCCEEEESSCCGGGCEEEEEECCC-----CE
T ss_pred             ceEEECCCCCEEEEEEeCC--cEEEccCCCceEEE----------eccCCccEEEEeeeccccCEEEEEEEeccCCccee
Confidence            5577899999999999765  59999876543221          112333456666554  599999999876554433


Q ss_pred             eeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-eceeEEEEeeeec
Q psy15235        107 TGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-QSKDSITIRKTTV  175 (323)
Q Consensus       107 ~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~  175 (323)
                      ...+.+         .+....+.+|+.+.|.|.+.+.++  ...+.|++ ++..+..    ..++. .....|.|.++..
T Consensus        80 ~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~--~~~v~W~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~  153 (289)
T 3ejj_X           80 TIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPAL--KDSVSLMREGGRQVLR----KTVYFFSPWRGFIIRKAKV  153 (289)
T ss_dssp             EEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGG--GGSEEEEEGGGEECCT----TCCEEEETTTEEEESSCCG
T ss_pred             EEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCc--ceEEEEEecCCeecCC----CccEEECCCCCEEEeeccc
Confidence            323222         334455788999999999998662  33599987 6666654    44544 4556799999999


Q ss_pred             CCCeeEEEEEEcCCCCCCCCceeeeeEEE----ecceeeee-ceeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeecc
Q psy15235        176 DDAGQYSCRLIDPKSTNTTPLAQADFDVI----MKPTAKLV-ETLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRS  249 (323)
Q Consensus       176 ~d~G~y~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~~~-~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~  249 (323)
                      +|+|.|+|.+..+.  .......+.|.|.    .+|.+... ....+.+|+.+.|.|.+.+ .|.+.+.|++++..+...
T Consensus       154 ~d~G~Y~C~a~~~~--~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~  231 (289)
T 3ejj_X          154 LDSNTYVCKTMVNG--RESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP  231 (289)
T ss_dssp             GGCEEEEEEEEETT--EEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCC
T ss_pred             ccCEEEEEEEEeCC--CccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeecc
Confidence            99999999993243  3345566777777    46666643 3445578999999999988 788999999999877532


Q ss_pred             CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      .... ..  .........|.|.+++.+|+|.|+|.|.|..|.    ...++.|.+.+++.
T Consensus       232 ~~~~-~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~s~~L~~~~~~~  284 (289)
T 3ejj_X          232 LNSD-FQ--DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT----RTATMNFQVVESHH  284 (289)
T ss_dssp             EEEE-EC--SSSEEEEEEEEESSCCSSSCEEEEEEEECSSCE----EEEEEEEECC----
T ss_pred             CCcc-cc--cceEEeeEEEEEEeecccCCEEEEEEEEcCCCC----ccccEEEEEEeccc
Confidence            1111 00  111113688999999999999999999999965    88999998887764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=100.00  E-value=8.2e-31  Score=218.75  Aligned_cols=259  Identities=16%  Similarity=0.203  Sum_probs=178.4

Q ss_pred             eeceEEecCCcEEEEEEec-----------cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCc-ceEE
Q psy15235         28 FGDTEIMEGAPINISCILT-----------IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILES-GYVQ   95 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~-----------~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G-~Y~C   95 (323)
                      ...+.+.+|+++.|.|.+.           +.+.++|+|++..+....   ..     ...+.+.|.-....|+| .|+|
T Consensus        36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~---~~-----~~~~~L~i~~v~~~D~Gs~Y~C  107 (329)
T 3oq3_B           36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLN---RR-----VKNGDLWIANYTSNDSHRRYLC  107 (329)
T ss_dssp             EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECS---TT-----EETTEEEESSCCGGGGGCCEEE
T ss_pred             cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccC---ce-----eecceEEEcCCChHhCCCcEEE
Confidence            3567799999999999932           446899999998776531   11     12444444444445699 9999


Q ss_pred             EeeccCCccceeee-eee--CCcee------EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEecee
Q psy15235         96 SSLFIPRMNAITGN-YDI--EPKYK------VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD  166 (323)
Q Consensus        96 ~~~~~~~~~~~~~~-~~~--~~~~~------~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~  166 (323)
                      .+.+..+....... ..+  .+...      .+.+|+.+.|.|.+.+.|+  .+.+.|++++..+..   ...++...+.
T Consensus       108 ~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~--~~~i~W~k~~~~l~~---~~~~~~~~~~  182 (329)
T 3oq3_B          108 TVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKH--YNNITWYKNNQELII---DGTKYSQSGQ  182 (329)
T ss_dssp             EEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCC--CCEEEEEETTEECCC---SSSSEEEETT
T ss_pred             EEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCC--CceEEEEECCccCCC---CCceEecCCC
Confidence            99987654221111 111  22211      1445999999999998763  379999999998853   1345544468


Q ss_pred             EEEEeeeecCCCeeEEEEEEcCC--CCCCCCc--eeeeeEEEecc----eeeeeceeEEeeCCeEEEEEEEecCC---CC
Q psy15235        167 SITIRKTTVDDAGQYSCRLIDPK--STNTTPL--AQADFDVIMKP----TAKLVETLTVIEGEKLRLECLVVGSP---PP  235 (323)
Q Consensus       167 ~l~i~~~~~~d~G~y~C~~~~~~--~~~~~~~--~~~~l~v~~~p----~~~~~~~~~~~~g~~~~l~C~~~g~p---~~  235 (323)
                      .|.|.++..+|+|.|+|.+ .|.  .+.....  ..+.|.|..+|    .+..+....+.+|+.+.|.|.+.|.|   .+
T Consensus       183 ~L~I~~v~~~D~G~Y~C~a-~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~  261 (329)
T 3oq3_B          183 NLIIHNPELEDSGRYDCYV-HYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDD  261 (329)
T ss_dssp             EEEECSCCGGGCEEEEEEE-EECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTC
T ss_pred             EEEEeecChhhCEEEEEEE-EecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCC
Confidence            8999999999999999999 654  3232222  23567776654    22255567888999999999999998   67


Q ss_pred             -cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe-EEEEEEeecccCCCCCceeEEEEEE
Q psy15235        236 -TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       236 -~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                       .+.|++++..+...+.+...............|+|.+++.+|.| .|+|.|.|..|.    ....+.|.|
T Consensus       262 i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~----~~~~~~l~v  328 (329)
T 3oq3_B          262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD----KTLTTTVVL  328 (329)
T ss_dssp             CEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCE----EEEEEEEEE
T ss_pred             cEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCc----eEEEEEEEe
Confidence             88999999875333222111100111124688999999999999 999999999965    777777765

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=5.4e-31  Score=226.47  Aligned_cols=254  Identities=12%  Similarity=0.143  Sum_probs=167.9

Q ss_pred             ceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcccee
Q psy15235         30 DTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAIT  107 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~~~  107 (323)
                      +..+..|+.+.|.|.  +.|.|.++|++++..+.........  ...  .....+   ...++|.|+|.+.|..+.....
T Consensus       148 p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~--~~~--~~~~~l---~~~d~G~Y~C~A~N~~G~~~~~  220 (423)
T 3qs7_E          148 PYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPA--VVK--KEEKVL---HELFGTDIRCCARNELGRECTR  220 (423)
T ss_dssp             EEEEECSSSSCEEEEEEESSCCEEEEEEC---------------CEE--ECCSEE---CCCCSSCEEEEEECSSCEEEEE
T ss_pred             CcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccc--ccc--ccceEE---ecccCeEEEEEEEcCCCCccee
Confidence            344567999999999  5678999999988754321000000  000  111111   3456999999999887654321


Q ss_pred             -eeeee------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc------cCcEEeceeEEEEeeee
Q psy15235        108 -GNYDI------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL------SGRLTQSKDSITIRKTT  174 (323)
Q Consensus       108 -~~~~~------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~  174 (323)
                       ..+.+      .+....+.+|+.+.|.|.+.+.+|  .+.|.|++++..+.....+      ..+.......|.|.++.
T Consensus       221 ~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p--~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  298 (423)
T 3qs7_E          221 LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH--GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA  298 (423)
T ss_dssp             CEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSS--CCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCC
T ss_pred             eEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCC--CcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecC
Confidence             22222      333456788999999999998443  6899999999877541111      11112334579999999


Q ss_pred             cCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeee---ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC
Q psy15235        175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV---ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG  251 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~  251 (323)
                      .+|+|.|+|.| .|.     ....+.|.|..+|.+...   ....+.+|+.+.|.|.+.|+|.|.+.|+++|..+.....
T Consensus       299 ~~D~G~Y~C~A-~N~-----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~  372 (423)
T 3qs7_E          299 RNDTGYYTCSS-SKH-----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK  372 (423)
T ss_dssp             TTTCEEEEEEE-TTE-----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCC
T ss_pred             HHHCEEEEEEE-ecC-----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccc
Confidence            99999999999 765     567778888888876532   245677899999999999999999999999998864421


Q ss_pred             eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        252 RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       252 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      ..  .       ....+.+.....+|+|.|+|.|.|..|.    ...++.|.|.++|.+.
T Consensus       373 ~~--~-------~~~~~~~~~~~~~D~G~YtC~A~N~~G~----~~~s~~L~v~~~p~~~  419 (423)
T 3qs7_E          373 GL--D-------NGYSISKFCNHKHQPGEYIFHAENDDAQ----FTKMFTLNIRSGTKHH  419 (423)
T ss_dssp             BC--S-------SSSEEEEECCCTTCCSCEEEEEEETTEE----EEEEEEEC--------
T ss_pred             cc--c-------CCcEEEEEecccccCEEEEEEEEcCCce----EEEEEEEEEecCCccc
Confidence            00  0       1122323556778999999999999966    8999999999988764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.4e-30  Score=222.85  Aligned_cols=254  Identities=20%  Similarity=0.283  Sum_probs=183.2

Q ss_pred             eceEEecCCcEEEEEEe---ccCceEEEEEcCccceeec---cCcceEEEeeeeCCeEEEEEeecccCc---ceEEEeec
Q psy15235         29 GDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSS---VDSGFAATANLTEDNFKYSIHEAILES---GYVQSSLF   99 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~G---~Y~C~~~~   99 (323)
                      .+..+.+|+.+.|.|.+   .|.+.+.|++++.......   ..... +.. ...+.+.+......|.|   .|+|.+.+
T Consensus       108 ~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~-~~~~~L~i~~v~~~d~G~~~~Y~C~a~n  185 (395)
T 1bih_A          108 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR-ITA-GPDGNLYFTIVTKEDVSDIYKYVCTAKN  185 (395)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTT-EEE-CTTSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             cceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccccccccccc-EEE-cCCCcEEEEEEeeccCCCceEEEEEEEe
Confidence            35667899999999993   4678999999862111110   00111 111 12445555555556689   99999998


Q ss_pred             cCCccceeeee---ee----------------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc
Q psy15235        100 IPRMNAITGNY---DI----------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR  160 (323)
Q Consensus       100 ~~~~~~~~~~~---~~----------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~  160 (323)
                      ..+........   ..                .+....+.+|+.+.|.|.+.+.+   .+.+.|+++|..+...  ...+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p---~~~i~W~~~g~~~~~~--~~~~  260 (395)
T 1bih_A          186 AAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP---MGYPNYFKNGKDVNGN--PEDR  260 (395)
T ss_dssp             TTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSS---CCCCEEEETTEECCCC--TTSS
T ss_pred             cccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCC---CCeEEEEECCEEcCCC--Ccee
Confidence            77663221110   00                12334577899999999999888   6789999999887641  1223


Q ss_pred             EE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeec-e-eEEeeCCeEEEEEEEecCCC
Q psy15235        161 LT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE-T-LTVIEGEKLRLECLVVGSPP  234 (323)
Q Consensus       161 ~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~-~~~~~g~~~~l~C~~~g~p~  234 (323)
                      +.    .....|.|.++..+|+|.|+|.+ .|..+. .....+.|.|..+|.+...+ . ..+.+|+.+.|.|.+.|+|.
T Consensus       261 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~-~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~  338 (395)
T 1bih_A          261 ITRHNRTSGKRLLFKTTLPEDEGVYTCEV-DNGVGK-PQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPA  338 (395)
T ss_dssp             EESCSSSTTSEEEESSCCGGGCEEEEEEE-CCSSSS-CEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESC
T ss_pred             EEEEecCCCceEEEccCChhhCEEEEEEE-EeCCCC-ceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccC
Confidence            32    23347999999999999999999 776433 12337788888888777433 3 67889999999999999999


Q ss_pred             CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        235 PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       235 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      |.+.|++++..+..  .++.+.        ...|+|.++..+|+|.|+|.|.|..|.    ....+.|.|.
T Consensus       339 p~v~W~~~g~~~~~--~~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~  395 (395)
T 1bih_A          339 PNVVWSHNAKPLSG--GRATVT--------DSGLVIKGVKNGDKGYYGCRATNEHGD----KYFETLVQVN  395 (395)
T ss_dssp             CCCEEEETTEECCS--SSEEEE--------TTEEEESSCCSTTCEEEEEEEEETTEE----EEEEEEEEEC
T ss_pred             CeeEEEECCEECCC--CceEEE--------CCEEEEeeCCcccCEEEEEEEEccCCC----ceEEEEEEEC
Confidence            99999999998753  355544        348999999999999999999999966    7778888763

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=3.3e-31  Score=227.33  Aligned_cols=253  Identities=18%  Similarity=0.270  Sum_probs=182.2

Q ss_pred             eceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeeccCCcc
Q psy15235         29 GDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLFIPRMN  104 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~~~~~~  104 (323)
                      .+..+.+|+.++|.|.+   .+.+.+.|++++......    ...... ...+.+.+......| +|.|+|.+.+..+..
T Consensus       124 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~----~~~~~~-~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~  198 (404)
T 3p3y_A          124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ----DKRVSQ-GHNGDLYFSNVMLQDMQTDYSCNARFHFTHT  198 (404)
T ss_dssp             CCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCC----CSSEEE-CTTSCEEESSCCSGGGSSCBEEEEECTTTCC
T ss_pred             CCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCC----CCcEEE-cCCCcEEEEeeeeccCCcceEEEEEeccccc
Confidence            34678899999999984   466799999987544332    111111 123344333333445 599999998765432


Q ss_pred             c-----eeeeeee-------C---------CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC-cEE
Q psy15235        105 A-----ITGNYDI-------E---------PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-RLT  162 (323)
Q Consensus       105 ~-----~~~~~~~-------~---------~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~  162 (323)
                      .     +...+..       .         +....+..|+.+.|.|.+.+.+   .+.+.|++++..+..    .. ++.
T Consensus       199 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p---~~~v~W~~~~~~~~~----~~~~~~  271 (404)
T 3p3y_A          199 IQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVP---TPDIAWYKKGGDLPS----DKAKFE  271 (404)
T ss_dssp             EEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSS---CCEEEEEETTBCCCT----TTEEEE
T ss_pred             eeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCC---CCcEEEEECCEECCC----Cccccc
Confidence            1     1111110       1         1224477899999999999987   679999999988765    22 333


Q ss_pred             eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEE
Q psy15235        163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRI  241 (323)
Q Consensus       163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~  241 (323)
                      .....|.|.++..+|+|.|+|.+ .|..+  .....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++
T Consensus       272 ~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~  348 (404)
T 3p3y_A          272 NFNKALRITNVSEEDSGEYFCLA-SNKMG--SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV  348 (404)
T ss_dssp             GGGTEEEESSCCGGGCEEEEEEE-ECSSC--EEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEE
T ss_pred             ccCceEEEccCCHhHCEEEEEEE-EeCCC--cEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEE
Confidence            55678999999999999999999 77743  35667788888888665 4445778899999999999999999999999


Q ss_pred             CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      +|..+..........      ..+..|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.+
T Consensus       349 ~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~d  403 (404)
T 3p3y_A          349 NGEPLQSAPPNPNRE------VAGDTIIFRDTQISSRAVYQCNTSNEHGY----LLANAFVSVLD  403 (404)
T ss_dssp             TTEEGGGSCCCTTEE------EETTEEEESSCCSSCCCEEEEEEEETTEE----EEEEEEEEEC-
T ss_pred             CCEecCCCCCCceEE------ecCCEEEEeecCHHHCEEEEEEEEeCCCc----EEEEEEEEEEe
Confidence            999886543211111      02568999999999999999999999966    77888887754

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.98  E-value=7.7e-31  Score=223.55  Aligned_cols=261  Identities=18%  Similarity=0.272  Sum_probs=172.9

Q ss_pred             EEeeceEE---ecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEe-ecccCcceEEEeec
Q psy15235         26 TYFGDTEI---MEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH-EAILESGYVQSSLF   99 (323)
Q Consensus        26 ~~~~~~~v---~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~G~Y~C~~~~   99 (323)
                      ..|.+..+   .+|+++.|.|.  +.|.+.++|+|+|..+....   .  ......++.+.+... ...|+|.|+|.+.|
T Consensus        10 ~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~---~--~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N   84 (384)
T 3kld_A           10 QEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM---D--FRYSVVDGSLLINNPNKTQDAGTYQCIATN   84 (384)
T ss_dssp             ECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC---------CEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred             eCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCC---C--ccEEEECCEEEEcCCCCcccCEEEEEEEEc
Confidence            34444444   58999999999  46788999999998886531   1  112223454433322 33569999999998


Q ss_pred             cCCcc-----ceeeeeee-----CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc-EE-eceeE
Q psy15235        100 IPRMN-----AITGNYDI-----EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR-LT-QSKDS  167 (323)
Q Consensus       100 ~~~~~-----~~~~~~~~-----~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~-~~~~~  167 (323)
                      ..+..     .+...+..     ......+.+|+.+.|.|......|  .+.+.|++++.++..    ..+ +. .....
T Consensus        85 ~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~----~~~~~~~~~~~~  158 (384)
T 3kld_A           85 SFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSG--ELSYAWIFNEYPSYQ----DNRRFVSQETGN  158 (384)
T ss_dssp             TTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEES--CEEEEEEETTEECCC----SSSEEECTTTCC
T ss_pred             CcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCC--CeEEEEEECCCCCEe----eccEEEEcCCCc
Confidence            76542     12111111     122345778999999997654333  679999999987654    333 22 44567


Q ss_pred             EEEeeeecCCCeeEEEEEEcCCCCCCC-CceeeeeEEE-------ecceee--eeceeEEeeCCeEEEEEEEecCCCCcE
Q psy15235        168 ITIRKTTVDDAGQYSCRLIDPKSTNTT-PLAQADFDVI-------MKPTAK--LVETLTVIEGEKLRLECLVVGSPPPTV  237 (323)
Q Consensus       168 l~i~~~~~~d~G~y~C~~~~~~~~~~~-~~~~~~l~v~-------~~p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~  237 (323)
                      |.|.++..+|+|.|+|.+ .|..+... ......+.+.       ..|.+.  .+....+.+|+.+.|.|.+.|+|.|.+
T Consensus       159 L~I~~v~~~D~G~Y~C~a-~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i  237 (384)
T 3kld_A          159 LYIAKVEKSDVGNYTCVV-TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI  237 (384)
T ss_dssp             EEESSCCGGGCEEEEEEE-EETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEE
T ss_pred             EEEeecCHHHCceEEEEE-ecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcE
Confidence            999999999999999999 66533211 0111122221       123322  344566888999999999999999999


Q ss_pred             EEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       238 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      .|++++........+.. .       ....|.|.+++.+|+|.|+|.|.|..|.    ......|.|...|..
T Consensus       238 ~W~k~~~~~~~~~~~~~-~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l~v~~~P~~  298 (384)
T 3kld_A          238 LWRRADGKPIARKARRH-K-------SNGILEIPNFQQEDAGSYECVAENSRGK----NVAKGQLTFYAQPNW  298 (384)
T ss_dssp             EEEETTCCCCCTTCEEC-T-------TSCEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEEEEEEE
T ss_pred             EEEeCCCccccccceec-C-------CCcEEEECCCChhhCEEEEEEEEcCCCe----EEEEEEEEEecCCcc
Confidence            99996543222222211 1       3578999999999999999999999976    667777777766643

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.98  E-value=7.9e-31  Score=223.84  Aligned_cols=248  Identities=21%  Similarity=0.283  Sum_probs=177.2

Q ss_pred             eceEEecCCcEEEEEEecc-----CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccC-cceEEEeecc
Q psy15235         29 GDTEIMEGAPINISCILTI-----FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILE-SGYVQSSLFI  100 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~~-----~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~-G~Y~C~~~~~  100 (323)
                      .+..+.+|+.++|.|.+..     .+.+.|++++..+.............. ..+  .|.|.++  .|+ |.|+|.+.+.
T Consensus       111 ~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~--~L~i~~v~~~d~~G~Y~C~~~n~  187 (388)
T 2v5m_A          111 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL-PSG--ELHIREVGPEDGYKSYQCRTKHR  187 (388)
T ss_dssp             CCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC-TTS--CEEESSCCGGGGGCCEEEEEEET
T ss_pred             cceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEc-cCC--cEEEecCCccccCeeEEEEeccC
Confidence            4567889999999999542     278999999887654311111111111 133  3555554  457 9999999876


Q ss_pred             CCcc--------ceeee---------ee-eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--cccccCc
Q psy15235        101 PRMN--------AITGN---------YD-IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--ATELSGR  160 (323)
Q Consensus       101 ~~~~--------~~~~~---------~~-~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~  160 (323)
                      .+..        .+...         +. .......+.+|+.++|.|.+.+.|   .+.|.|++++..+..  ......+
T Consensus       188 ~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~  264 (388)
T 2v5m_A          188 LTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP---APSFRWYKFIEGTTRKQAVVLNDR  264 (388)
T ss_dssp             TTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEES---CCEEEEEEECTTSSCEEECCCSSS
T ss_pred             CCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCC---CCEEEEEecCCCCcccccccccCc
Confidence            4221        11111         00 012233467899999999999887   689999997543321  1112344


Q ss_pred             EEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEE
Q psy15235        161 LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEW  239 (323)
Q Consensus       161 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W  239 (323)
                      +......|.|.++..+|+|.|+|.+ .|..+  .....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|
T Consensus       265 ~~~~~~~L~i~~v~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W  341 (388)
T 2v5m_A          265 VKQVSGTLIIKDAVVEDSGKYLCVV-NNSVG--GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW  341 (388)
T ss_dssp             EEEETTEEEESSCCGGGCEEEEEEE-ECSSC--EEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEE
T ss_pred             eecccCEEEECcCCHHHCeEEEEEE-ecCCC--ceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEE
Confidence            4445678999999999999999999 77743  35667778888877665 44466788999999999999999999999


Q ss_pred             EECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        240 RIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      +++|..+...               .+.|.|.++..+|+|.|+|.|.|..|.    ....+.|.|
T Consensus       342 ~~~g~~i~~~---------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V  387 (388)
T 2v5m_A          342 MKDGKAIGHS---------------ESVLRIESVKKEDKGMYQCFVRNDRES----AEASAELKL  387 (388)
T ss_dssp             EETTEECSCC---------------SSEEEESSCCGGGCEEEEEEEECSSCE----EEEEEEEEE
T ss_pred             EECCEECccC---------------CCEEEEecCChhhCEEEEEEEEcCCCc----EEEEEEEEe
Confidence            9999887422               468999999999999999999999965    778888776

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.98  E-value=2.7e-30  Score=229.07  Aligned_cols=269  Identities=15%  Similarity=0.137  Sum_probs=189.2

Q ss_pred             EeeceEEecCCcEEEEEEec--cCceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeecccCc-ceEEEeeccCC
Q psy15235         27 YFGDTEIMEGAPINISCILT--IFEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAILES-GYVQSSLFIPR  102 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G-~Y~C~~~~~~~  102 (323)
                      .+.+..+.+|++++|.|.+.  +.+.++|++ +|..+...     ..+... ..+.+.+......|+| .|+|.+.+..+
T Consensus       120 ~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~-----~~~~~~-~~~~L~i~~~~~~d~G~~Y~C~a~n~~~  193 (524)
T 2ec8_A          120 VDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKD-----LRFIPD-PKAGIMIKSVKRAYHRLCLHCSVDQEGK  193 (524)
T ss_dssp             CCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSS-----CEEEEE-TTTEEEEESCCGGGTTCEEEEEEC----
T ss_pred             cccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCC-----CceeEC-CCccEEEeccchhhCCceEEEEEEECCc
Confidence            34557789999999999954  337999998 77666543     112222 1344444444455599 99999987644


Q ss_pred             cc---c----------eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeec--cccc--cccCc-EEe
Q psy15235        103 MN---A----------ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSI--TEAT--ELSGR-LTQ  163 (323)
Q Consensus       103 ~~---~----------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~--~~~~--~~~~~-~~~  163 (323)
                      ..   .          ..|.+...+....+.+|+.++|.|.+.+.+   .+ .+.|++++..+  ....  ..... ...
T Consensus       194 ~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p---~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  270 (524)
T 2ec8_A          194 SVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVS---SSVYSTWKRENSQTKLQEKYNSWHHGDFNYE  270 (524)
T ss_dssp             CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESS---TTCEEEEEETTCSCCCCEEEEEEECSSSCEE
T ss_pred             eEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCC---CcEEEEEEeCCCCCccccccccccccCCccc
Confidence            32   1          112333344555688999999999999877   45 49999999873  2200  00000 114


Q ss_pred             ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeec----eeEEeeCCeEEEEEEEecCCCCc-EE
Q psy15235        164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE----TLTVIEGEKLRLECLVVGSPPPT-VE  238 (323)
Q Consensus       164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~----~~~~~~g~~~~l~C~~~g~p~~~-~~  238 (323)
                      ....|.|.++..+|+|.|+|.+ .|..+  .....+.|.|..+|.+...+    ...+.+|+.+.|.|.+.|+|.|. +.
T Consensus       271 ~~~~L~I~~~~~~D~G~Y~C~a-~n~~g--~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~  347 (524)
T 2ec8_A          271 RQATLTISSARVNDSGVFMCYA-NNTFG--SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQ  347 (524)
T ss_dssp             EEEEEEESSCCTTTCEEEEEEE-ECSSC--EEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEE
T ss_pred             eEEEEEECCCCHHHCEEEEEEE-EecCC--ceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEE
Confidence            4678999999999999999999 77633  34557788888888776432    57788999999999999999998 99


Q ss_pred             EEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      |++++..+.....++..............|.|.++..+|+|.|+|.|.|..|.    ....+.|.|..+|...
T Consensus       348 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~~P~i~  416 (524)
T 2ec8_A          348 WIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN----AAIAFNVYVNTKPEIL  416 (524)
T ss_dssp             EESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE----EEEEEEEEECEEEEEE
T ss_pred             EEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCce----EEEEEEEEEecCCeEe
Confidence            99999888655434333311111123578999999999999999999999965    7888899998777544

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=229.17  Aligned_cols=252  Identities=12%  Similarity=0.121  Sum_probs=173.0

Q ss_pred             ceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcccee
Q psy15235         30 DTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAIT  107 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~~~  107 (323)
                      +.....|+.+.|.|.  +.|.|.++|++++..+.....  .........     .......|+|.|+|.+.|..+.....
T Consensus       148 p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~d~G~Y~C~A~N~~G~~~~~  220 (527)
T 3qs9_E          148 PYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKE--ESPAVVKKE-----EKVLHELFGTDIRCCARNELGRECTR  220 (527)
T ss_dssp             EEEEECSSSSCEEEEEEESSCCEEEEEEC---------------CEEEC-----CSEECCCCSSCEEEEEECSSCEEEEE
T ss_pred             CcEEecCCceEEEEEEceecCCeEEEEECCCCCccccc--cCCcEEEEe-----eeeccccCCEEEEEEEEeCCCcccce
Confidence            334567888999999  567899999998766532200  000000000     11122456999999999877665332


Q ss_pred             -eeeee------CCceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccc------cCcEEeceeEEEEeee
Q psy15235        108 -GNYDI------EPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATEL------SGRLTQSKDSITIRKT  173 (323)
Q Consensus       108 -~~~~~------~~~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~  173 (323)
                       ..+.+      .+....+.+|+.+.|.|.+. +.+   .+.|+|++++..+......      ..+.......|.|.++
T Consensus       221 ~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v  297 (527)
T 3qs9_E          221 LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH---GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV  297 (527)
T ss_dssp             CEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSS---CCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSC
T ss_pred             EEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCC---CeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccC
Confidence             22222      34455688899999999997 766   7899999999877551111      0111133456999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeec---eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ  250 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~  250 (323)
                      +.+|+|.|+|.| .|.     ....+.|.|..+|.+....   ...+.+|+.+.|.|.+.|+|.|.+.|+++|..+....
T Consensus       298 ~~~DsG~Y~C~a-~N~-----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~  371 (527)
T 3qs9_E          298 ARNDTGYYTCSS-SKH-----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ  371 (527)
T ss_dssp             CGGGCEEEEEEE-TTE-----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBC
T ss_pred             CcccCeEEEEEE-EeC-----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCc
Confidence            999999999999 765     5667788888877665322   3567789999999999999999999999999886443


Q ss_pred             CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      . ...        ....|.|.+++.+|+|.|+|.|.|..|.    ....+.|.|..+|..
T Consensus       372 ~-~~~--------~~~~L~I~~v~~~D~G~YtC~A~N~~g~----~~~~~~L~V~~~P~i  418 (527)
T 3qs9_E          372 K-GLD--------NGYSISKFCNHKHQPGEYIFHAENDDAQ----FTKMFTLNIRRKPQV  418 (527)
T ss_dssp             C-BCS--------SSSEEEEECCCTTCCSCEEEEEEETTEE----EEEEEEEC--CCCEE
T ss_pred             c-ccc--------CCcEEEEecCCcccCEEEEEEEEeCCCc----EEEEEEEEEecCCeE
Confidence            2 111        3578999999999999999999999966    777888888866643

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.97  E-value=5.6e-31  Score=222.79  Aligned_cols=253  Identities=11%  Similarity=0.074  Sum_probs=174.1

Q ss_pred             ceEEecCCcEEEEEEe--ccCceEEEEEcCccceeecc---------CcceEEEeee---eCCeEEEEEeecc--cCcce
Q psy15235         30 DTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSV---------DSGFAATANL---TEDNFKYSIHEAI--LESGY   93 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~---------~~~~~~~~~~---~~~~~~l~i~~~~--~~G~Y   93 (323)
                      .+.+.+|++++|.|.+  .+.+.+.|+|++..+.....         .....+....   ..+...|.|.+++  |+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            3678999999999995  46689999999865332100         0001111111   2345556666655  49999


Q ss_pred             EEEeeccCCccceeee-eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEee
Q psy15235         94 VQSSLFIPRMNAITGN-YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK  172 (323)
Q Consensus        94 ~C~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~  172 (323)
                      +|.+.+..+...+.+. +.+.+. ..+.+|++++|.|.+.+.+   .+.+.|++++..+.          .....|.|.+
T Consensus        83 ~C~~~n~~~~~~l~V~~~~~~~~-~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~----------~~~~~L~i~~  148 (363)
T 1wio_A           83 ICEVEDQKEEVQLLVFGLTANSD-THLLQGQSLTLTLESPPGS---SPSVQCRSPRGKNI----------QGGKTLSVSQ  148 (363)
T ss_dssp             EEEETTEEEEEEEEEEEEEESSC-SSEESBSCEEEEEECCTTC---CCCEEEECSSSCEE----------EESSEEEECS
T ss_pred             EEEEEECCCcEEEEEEeCCCCCc-eEEecCCCEEEEEEcCCCC---CCeEEEEcCCCccc----------ccceEEEEee
Confidence            9999877544333322 222333 3467899999999998876   78999999876553          3567899999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEec-----CCCCcEEEEECCeeee
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG-----SPPPTVEWRIGNDTYF  247 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~~~~~  247 (323)
                      +..+|+|.|+|.+ .+.  .......+.+.|..+|...  ....+.+|+.+.|.|.+.+     +|.|.+.|+++|..+.
T Consensus       149 v~~~d~G~Y~C~a-~~~--~~~~~~~~~l~v~~~p~~~--~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~  223 (363)
T 1wio_A          149 LELQDSGTWTCTV-LQN--QKKVEFKIDIVVLAFQKAS--SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSS  223 (363)
T ss_dssp             BCGGGCEECEEEE-EET--TEEEEECCEECEECCSCSE--EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCC
T ss_pred             CChhcCCEEEEEE-ecC--CCeEEEEEEEEEecCCCCC--CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCcc
Confidence            9999999999999 555  2233444555665544432  4556788999999998877     7788999999998765


Q ss_pred             cc-------CCeeeeecCCC------CCCcceeEEEeecCcCCCeEEEEEEeec--ccCCCCCceeEEEEEEc
Q psy15235        248 RS-------QGRIKLSEHPE------KGTANSVLQIDEATMADRGNYYCHGNNV--ATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       248 ~~-------~~~~~~~~~~~------~~~~~~~L~i~~v~~~d~G~y~C~a~n~--~g~~~~~~~~~~~l~v~  305 (323)
                      ..       +.++.+.....      .......|+|.++..+|+|.|+|.|.|.  .|.    ....+.|.|.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~----~~~~~~l~V~  292 (363)
T 1wio_A          224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK----LHQEVNLVVM  292 (363)
T ss_dssp             CCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCC----EEEEEEEEEE
T ss_pred             ceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCe----EEEEEeEEEE
Confidence            42       34443321000      0112458999999999999999999999  865    6666666665

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.97  E-value=5.2e-30  Score=220.35  Aligned_cols=259  Identities=13%  Similarity=0.109  Sum_probs=162.9

Q ss_pred             EEeeceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccC
Q psy15235         26 TYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIP  101 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~  101 (323)
                      ..+.++.|.+|+++.|.|.  +.|.+.+.|++++..+......      .........|.|.+++.  +|.|+|.+.+..
T Consensus        53 ~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~------~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~  126 (423)
T 3qs7_E           53 YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF------DLQNRGVVSMVILKMTETQAGEYLLFIQSEA  126 (423)
T ss_dssp             ---CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--
T ss_pred             eccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCcccee------ccccceEEEEEEeecCcccCEEEEEEEEcCC
Confidence            3445788999999999999  4567899999988766542110      01112334577777654  999999999987


Q ss_pred             CccceeeeeeeC-------CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc-ccCcEEeceeEEEEeee
Q psy15235        102 RMNAITGNYDIE-------PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-LSGRLTQSKDSITIRKT  173 (323)
Q Consensus       102 ~~~~~~~~~~~~-------~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~  173 (323)
                      +.......+.+.       ........|+.+.|.|.+.|.|   .+.|+|++++..+..... ...........     +
T Consensus       127 g~~~~~~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P---~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~-----l  198 (423)
T 3qs7_E          127 TNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP---EPIVEWVLCDSQGESCKEESPAVVKKEEKV-----L  198 (423)
T ss_dssp             CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESS---CCEEEEEEC-------------CEEECCSE-----E
T ss_pred             CcEEEEEEEEEecCccccccCCcEeccCCceEEEEEEeeec---CCeEEEEECCCCCccccccccccccccceE-----E
Confidence            765444444442       2223355688889999999988   789999998875432000 00011111111     1


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeeccCCe
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQGR  252 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~  252 (323)
                      ...|+|.|+|.| .|..+... ...+.|.|..+|.. .+....+.+|+.+.|.|.+.| .|.+.+.|++++..+.... .
T Consensus       199 ~~~d~G~Y~C~A-~N~~G~~~-~~~~~l~V~~~p~~-~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~-~  274 (423)
T 3qs7_E          199 HELFGTDIRCCA-RNELGREC-TRLFTIDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN-Y  274 (423)
T ss_dssp             CCCCSSCEEEEE-ECSSCEEE-EECEEEESSSCCCS-STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGG-E
T ss_pred             ecccCeEEEEEE-EcCCCCcc-eeeEEEEEecCCcc-CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccc-e
Confidence            568999999999 77743321 23455666555544 233667889999999999998 6779999999998775321 1


Q ss_pred             eeeecC-CC-CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        253 IKLSEH-PE-KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       253 ~~~~~~-~~-~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      +..... .. ......+|.|.+++.+|+|.|+|.|.|.       ....+.|.|..+|.
T Consensus       275 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~-------~~~~~~L~V~~~p~  326 (423)
T 3qs7_E          275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-------PSQSALVTIVEKGF  326 (423)
T ss_dssp             EEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE-------EEEEEEEEEESSCE
T ss_pred             eecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC-------CCceEEEEEEeCCc
Confidence            100000 00 0113467999999999999999999987       23566666665543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.97  E-value=1.8e-29  Score=229.05  Aligned_cols=234  Identities=21%  Similarity=0.320  Sum_probs=173.7

Q ss_pred             eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCCc
Q psy15235         28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPRM  103 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~  103 (323)
                      +....+.+|+.+.|.|.+  .|.+.++|+++|..+...              .  .|.|.++  .|+|.|+|.+.+..+.
T Consensus       388 ~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~--------------~--~L~i~~~~~~d~G~Y~C~a~n~~g~  451 (642)
T 1e07_A          388 PSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT--------------Q--ELFISNITEKNSGLYTCQANNSASG  451 (642)
T ss_pred             CCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCC--------------c--eEEEccCChhhCeEEEEEEEcCCCC
Confidence            345678899999999994  567899999998766542              1  2444444  4599999999987654


Q ss_pred             cc----eeeeeee---C-----CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEE
Q psy15235        104 NA----ITGNYDI---E-----PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSIT  169 (323)
Q Consensus       104 ~~----~~~~~~~---~-----~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~  169 (323)
                      ..    +...+..   .     .....+.+|+.++|.|.+.+ +   .+.+.|+++|..+..    ..++.  .....|.
T Consensus       452 ~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-~---~~~i~W~~~g~~l~~----~~~~~~~~~~~~L~  523 (642)
T 1e07_A          452 HSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA-Q---NTTYLWWVNGQSLPV----SPRLQLSNGNRTLT  523 (642)
T ss_pred             CcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC-C---CcEEEEEECCEeCCC----CCcEEEcCCCcEEE
Confidence            32    1111111   1     11233668999999999984 4   679999999998876    45554  3456899


Q ss_pred             EeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecce-ee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235        170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF  247 (323)
Q Consensus       170 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~-~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~  247 (323)
                      |.++..+|+|.|+|.+ .|..+. ..+..+.|.|..+|. +. .+....+.+|+.+.|.|.+.|.|++.+.|+++|..+.
T Consensus       524 i~~v~~~d~G~Y~C~a-~n~~g~-~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~  601 (642)
T 1e07_A          524 LFNVTRNDARAYVCGI-QNSVSA-NRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ  601 (642)
T ss_pred             EeecChhcCceEEEEe-EcCCCC-ccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECc
Confidence            9999999999999999 676433 233457788876543 32 3456778899999999999999999999999998764


Q ss_pred             ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      .                ...|.|.++..+|+|.|+|.|.|..|.  .+.+..+.|.|.
T Consensus       602 ~----------------~~~L~i~~~~~~d~G~Y~C~a~N~~G~--~~~s~~l~V~v~  641 (642)
T 1e07_A          602 H----------------TQVLFIAKITPNNNGTYACFVSNLATG--RNNSIVKSITVS  641 (642)
T ss_pred             c----------------CceEEECcccccCCeEEEEEEEecccC--cceeEEEEEEEc
Confidence            2                357999999999999999999999977  334444444443

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.97  E-value=1.1e-30  Score=231.56  Aligned_cols=249  Identities=15%  Similarity=0.177  Sum_probs=177.9

Q ss_pred             eceEEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCCccce
Q psy15235         29 GDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPRMNAI  106 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~~~~  106 (323)
                      ....+.+|++++|.|.+.+  .++|++++..+. .          .  .....|.|.++  .|+|.|+|.+.+  +. ..
T Consensus        44 ~~~~v~~G~~v~l~C~~~~--~v~W~~~~~~~~-~----------~--~~~~~L~I~~~~~~D~G~Y~C~a~n--g~-~~  105 (524)
T 2ec8_A           44 SDLIVRVGDEIRLLCTDPG--FVKWTFEILDET-N----------E--NKQNEWITEKAEATNTGKYTCTNKH--GL-SN  105 (524)
T ss_dssp             SEEECCTTSCEEEEEECTT--EEEEEEESSSCC-E----------E--ECSSEEEESSCCSTTCEEEEEEETT--SC-EE
T ss_pred             ceEEEeCCCeEEEEEeCCc--eEEEcCCCcccc-c----------c--CccceEEEcccchhhCEEEEEeecC--Cc-ce
Confidence            4567899999999999776  999999998662 1          1  22344555555  459999999988  21 22


Q ss_pred             eeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-eceeEEEEeeeecC
Q psy15235        107 TGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-QSKDSITIRKTTVD  176 (323)
Q Consensus       107 ~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~  176 (323)
                      ...+.+        .+....+.+|+.++|.|.+.+.+   .+.+.|++ +|..+..    ..++. .....|.|.+++.+
T Consensus       106 ~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~---~~~v~W~~~~g~~l~~----~~~~~~~~~~~L~i~~~~~~  178 (524)
T 2ec8_A          106 SIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE---VTNYSLKGCQGKPLPK----DLRFIPDPKAGIMIKSVKRA  178 (524)
T ss_dssp             EEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCC---CSCEEEECSSSCCCCS----SCEEEEETTTEEEEESCCGG
T ss_pred             EEEEEECCCCcccccccceEEEcCCeEEEECcCCCCc---cceEEEEccCCcCcCC----CCceeECCCccEEEeccchh
Confidence            222222        23334477899999999998855   58999998 7877765    45554 45668999999999


Q ss_pred             CCe-eEEEEEEcCCCCCCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecCCCCc-EEEEECCeee--e
Q psy15235        177 DAG-QYSCRLIDPKSTNTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTY--F  247 (323)
Q Consensus       177 d~G-~y~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~--~  247 (323)
                      |+| .|+|.+ .+..+. ..+..+.|.|.    .+|.+. .+....+.+|+.+.|.|.+.|.|.+. +.|++++..+  .
T Consensus       179 d~G~~Y~C~a-~n~~~~-~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~  256 (524)
T 2ec8_A          179 YHRLCLHCSV-DQEGKS-VLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ  256 (524)
T ss_dssp             GTTCEEEEEE-C----C-CCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCC
T ss_pred             hCCceEEEEE-EECCce-EEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccc
Confidence            999 999999 666322 23446777776    466665 34456789999999999999998886 9999999873  2


Q ss_pred             ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      .. .+..+.. .........|.|.++..+|+|.|+|.|.|..|.    ....+.|.|..+|..
T Consensus       257 ~~-~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~  313 (524)
T 2ec8_A          257 EK-YNSWHHG-DFNYERQATLTISSARVNDSGVFMCYANNTFGS----ANVTTTLEVVDKGFI  313 (524)
T ss_dssp             EE-EEEEECS-SSCEEEEEEEEESSCCTTTCEEEEEEEECSSCE----EEEEEEEEEESSCEE
T ss_pred             cc-ccccccc-CCccceEEEEEECCCCHHHCEEEEEEEEecCCc----eEEEEEEEEeccCce
Confidence            11 1111110 001124689999999999999999999999865    667888888766544

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.97  E-value=9.3e-30  Score=212.54  Aligned_cols=268  Identities=12%  Similarity=0.139  Sum_probs=173.4

Q ss_pred             CceEEEeeceEEecCCcEEEEEEecc------CceEEEEEcCccceee----c---------cCcceEEEeeeeCCeEEE
Q psy15235         22 DGKITYFGDTEIMEGAPINISCILTI------FEQVKWQLNGRNINQS----S---------VDSGFAATANLTEDNFKY   82 (323)
Q Consensus        22 ~~~i~~~~~~~v~~G~~v~L~C~~~~------~~~v~W~~~g~~~~~~----~---------~~~~~~~~~~~~~~~~~l   82 (323)
                      ...+..+.++.+.+|++++|.|.+..      .+.+.|++++......    .         ...++....+.......|
T Consensus        15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L   94 (331)
T 3u83_A           15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTI   94 (331)
T ss_dssp             ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCE
T ss_pred             cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceE
Confidence            33455667788999999999999432      3479999965321110    0         011111111222334456


Q ss_pred             EEeecc--cCcceEEEeec-cCCccceeeeeee----------CCceeEEecC---CcEEEEEE-eecCCCCCCceEEEE
Q psy15235         83 SIHEAI--LESGYVQSSLF-IPRMNAITGNYDI----------EPKYKVFEYR---VPFTLKCN-VTSPPPGDDYQIVWY  145 (323)
Q Consensus        83 ~i~~~~--~~G~Y~C~~~~-~~~~~~~~~~~~~----------~~~~~~~~~g---~~v~l~C~-~~~~~~~~~~~i~W~  145 (323)
                      .|.+++  |+|.|+|.+.. ..+.......+.+          .+....+.+|   +.++|.|. ..+.|   .+.+.|+
T Consensus        95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p---~~~i~W~  171 (331)
T 3u83_A           95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKP---PSVVSWE  171 (331)
T ss_dssp             EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBS---CCEEEEE
T ss_pred             EEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcC---CceEEEE
Confidence            666654  49999999543 3333222222222          2222335567   77999998 67777   7899999


Q ss_pred             ECCeeccc--cccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeee--eceeEEeeCC
Q psy15235        146 KGNKSITE--ATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKL--VETLTVIEGE  221 (323)
Q Consensus       146 ~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~g~  221 (323)
                      +++.....  ..............|.|.++..+|+|.|+|.+ .+..  ......+.|.|..+|.+..  +....+.+|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~--~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~  248 (331)
T 3u83_A          172 TRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIV-NYHM--DRFKESLTLNVQYEPEVTIEGFDGNWYLQRM  248 (331)
T ss_dssp             ESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEE-EETT--EEEEEEEECCEEEEEEEEEECCCSCCBTTCC
T ss_pred             cCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEE-ecCC--CcceeeEEEEEecCCeEEEecCCCceEeCCC
Confidence            96332211  00001111123456888888999999999999 6663  3356777888888786653  2234577899


Q ss_pred             eEEEEEEEecCCCCc-EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEe-ecCcCCCeEEEEEEeecccCCCCCceeE
Q psy15235        222 KLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID-EATMADRGNYYCHGNNVATRNSQPNEAF  299 (323)
Q Consensus       222 ~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~-~v~~~d~G~y~C~a~n~~g~~~~~~~~~  299 (323)
                      .+.|.|.+.|+|.|. +.|++++..+...   ...        ...+|.|. ++..+|+|.|+|.|.|..|.    ....
T Consensus       249 ~~~l~C~~~g~p~p~~i~W~~~~~~~~~~---~~~--------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~----~~~~  313 (331)
T 3u83_A          249 DVKLTCKADANPPATEYHWTTLNGSLPKG---VEA--------QNRTLFFKGPINYSLAGTYICEATNPIGT----RSGQ  313 (331)
T ss_dssp             CEEEEEEEEEESCCCEEEEEETTBSCCTT---EEE--------ETTEEEECSCCCGGGCEEEEEEEEETTEE----EEEE
T ss_pred             eEEEEEeCcCCCCCCEEEEEECCCccccc---cee--------cCcEEEEeCCCccccCeEEEEEEEecccc----ceEE
Confidence            999999999999998 9999999877432   112        25789999 99999999999999999966    7889


Q ss_pred             EEEEEcceecC
Q psy15235        300 VYVRVKGKSFG  310 (323)
Q Consensus       300 ~~l~v~~~~~~  310 (323)
                      +.|.|.+++..
T Consensus       314 ~~l~V~~~~~~  324 (331)
T 3u83_A          314 VEVNITEAAAL  324 (331)
T ss_dssp             EEECCBC----
T ss_pred             EEEEEeccchh
Confidence            99999887654

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.97  E-value=2.1e-30  Score=222.32  Aligned_cols=261  Identities=19%  Similarity=0.286  Sum_probs=180.6

Q ss_pred             eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEe--ec--ccCcceEEEeeccC
Q psy15235         28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH--EA--ILESGYVQSSLFIP  101 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~--~~--~~~G~Y~C~~~~~~  101 (323)
                      +.+..+.+|++++|.|.+  .|.+.++|+|+|..+......   ........+.+.+.+.  ++  .|+|.|+|.+.+..
T Consensus        24 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~---~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~  100 (404)
T 3p3y_A           24 AKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP---RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKF  100 (404)
T ss_dssp             CTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCS---SCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSS
T ss_pred             CccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCC---cceEecCCceEEEEeccCCCCccCCEEEEEEEEcCC
Confidence            566789999999999994  466799999999877543111   1111122343433321  33  45999999999876


Q ss_pred             Cccc-eeeeeee---------CCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEE
Q psy15235        102 RMNA-ITGNYDI---------EPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSIT  169 (323)
Q Consensus       102 ~~~~-~~~~~~~---------~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~  169 (323)
                      +... ....+.+         ......+.+|+.++|.|.+ .+.+   .+.+.|++++.....   ...++. .....|.
T Consensus       101 g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p---~~~v~W~~~~~~~~~---~~~~~~~~~~~~l~  174 (404)
T 3p3y_A          101 GTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLP---SPVIFWMSSSMEPIT---QDKRVSQGHNGDLY  174 (404)
T ss_dssp             CEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSS---CCEEEEECTTSCBCC---CCSSEEECTTSCEE
T ss_pred             CeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCC---CCeEEEeCCCccccC---CCCcEEEcCCCcEE
Confidence            5542 2222222         1223457789999999998 5555   689999998754332   133443 4566899


Q ss_pred             EeeeecCC-CeeEEEEEEcCCCCCC-CCceeeeeEEEec-------ceeee----eceeEEeeCCeEEEEEEEecCCCCc
Q psy15235        170 IRKTTVDD-AGQYSCRLIDPKSTNT-TPLAQADFDVIMK-------PTAKL----VETLTVIEGEKLRLECLVVGSPPPT  236 (323)
Q Consensus       170 i~~~~~~d-~G~y~C~~~~~~~~~~-~~~~~~~l~v~~~-------p~~~~----~~~~~~~~g~~~~l~C~~~g~p~~~  236 (323)
                      |.++..+| +|.|+|.+ .+..+.. .....+.+.+...       |.+..    +....+.+|+.+.|.|.+.|+|.+.
T Consensus       175 i~~v~~~d~~G~Y~C~a-~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~  253 (404)
T 3p3y_A          175 FSNVMLQDMQTDYSCNA-RFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPD  253 (404)
T ss_dssp             ESSCCSGGGSSCBEEEE-ECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCE
T ss_pred             EEeeeeccCCcceEEEE-EeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCc
Confidence            99999999 59999999 6653321 2233455555432       22221    1245688899999999999999999


Q ss_pred             EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       237 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      +.|++++..+......+..        ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|..+|..
T Consensus       254 v~W~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~  315 (404)
T 3p3y_A          254 IAWYKKGGDLPSDKAKFEN--------FNKALRITNVSEEDSGEYFCLASNKMGS----IRHTISVRVKAAPYW  315 (404)
T ss_dssp             EEEEETTBCCCTTTEEEEG--------GGTEEEESSCCGGGCEEEEEEEECSSCE----EEEEEEEEEEEEEEE
T ss_pred             EEEEECCEECCCCcccccc--------cCceEEEccCCHhHCEEEEEEEEeCCCc----EEEEEEEEEeCCCee
Confidence            9999999887644333222        3678999999999999999999999965    778888888877643

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.97  E-value=1.4e-29  Score=210.13  Aligned_cols=266  Identities=17%  Similarity=0.157  Sum_probs=165.5

Q ss_pred             CceEEEeeceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeecc
Q psy15235         22 DGKITYFGDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFI  100 (323)
Q Consensus        22 ~~~i~~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~  100 (323)
                      .+.+.......+.+|++++|.|.+.+ .+.+.|+|+|..+....       ........+.|.-....|+|.|+|.+.+.
T Consensus        24 ~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~-------~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~   96 (316)
T 3vh8_G           24 KPFLSAWPSAVVPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIF-------HGRIFQESFNMSPVTTAHAGNYTCRGSHP   96 (316)
T ss_dssp             CCEEEEESCSEEETTSCEEEEEEBTTBCCSEEEEESSCSSSCHH-------HHCCBSSCEEECSCCGGGCEEEEEEEBCS
T ss_pred             CCEeeccCCCccCCCCCEEEEEEccCCCceEEEEeCCCccceee-------cCCcceEEEEECCCCcccCeEEEEEEEcC
Confidence            44454444467889999999999543 57899999998754420       00112344444444455699999998753


Q ss_pred             CCc-------cceee---------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--
Q psy15235        101 PRM-------NAITG---------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--  162 (323)
Q Consensus       101 ~~~-------~~~~~---------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--  162 (323)
                      ...       ..+..         .+...+... +.+|+.++|.|.+.+ +   .+.+.|++++..+..... .....  
T Consensus        97 ~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~-~---~~~~~w~k~g~~~~~~~~-~~~~~~~  170 (316)
T 3vh8_G           97 HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSDI-M---FEHFFLHKEGISKDPSRL-VGQIHDG  170 (316)
T ss_dssp             SSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEESS-C---CSEEEEEETTCCSCCEEE-ECEEETT
T ss_pred             CCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCCC-C---CcEEEEEECCCcccccee-eeeecCC
Confidence            211       11111         111222222 678999999999954 3   468999999987643100 11111  


Q ss_pred             eceeEEEEeeeecCCCeeEEEEEEcCCCCC---CCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCc
Q psy15235        163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTN---TTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPT  236 (323)
Q Consensus       163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~---~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~  236 (323)
                      .....|.|.+++.+|+|.|+|.+ .|..+.   ...+..+.|.|..   +|.+...+...+.+|+.++|.|.+. .|.+.
T Consensus       171 ~~~~~L~i~~v~~~D~G~Y~C~a-~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~-~~~~~  248 (316)
T 3vh8_G          171 VSKANFSIGPMMLALAGTYRCYG-SVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR-SSYDM  248 (316)
T ss_dssp             EEEEEEEECSCCGGGCEEEEEEE-ECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEES-SCCSE
T ss_pred             CceEEEEECCCChhhCceEEEEE-ecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECC-CCCcE
Confidence            35678999999999999999999 666432   1224556666653   4566655555678999999999997 47789


Q ss_pred             EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEccee
Q psy15235        237 VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKGKS  308 (323)
Q Consensus       237 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~~~  308 (323)
                      +.|+++|..+........    ...+.....|.|.+++  |+|.|+|.|.|..+.. ....+..+.|.|.++|
T Consensus       249 ~~W~k~g~~~~~~~~~~~----~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          249 YHLSREGGAHERRLPAVR----KVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             EEEEETTSSCCEEEECEE----CTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred             EEEEECCCcCCCceecee----ccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence            999999976642211111    1111134789999999  9999999999977531 2346778888888876

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=9.7e-30  Score=212.13  Aligned_cols=268  Identities=12%  Similarity=0.158  Sum_probs=160.3

Q ss_pred             eeceEEecCCcEEEEEEec---cCceEEEEEcCccceeec--cC----cceEEEeee---eCCeEEEEEeecc--cCcce
Q psy15235         28 FGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSS--VD----SGFAATANL---TEDNFKYSIHEAI--LESGY   93 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~--~~----~~~~~~~~~---~~~~~~l~i~~~~--~~G~Y   93 (323)
                      +.++.+.+|++++|.|.+.   |.+.++|+|++.......  ..    .+.....+.   ......|.|.+++  |+|.|
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   89 (327)
T 2wng_A           10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTY   89 (327)
T ss_dssp             CSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEE
T ss_pred             CCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEE
Confidence            5678899999999999954   457899999886543210  00    011111110   0334456666665  59999


Q ss_pred             EEEeeccCCcc-------ceeeeeeeCCce-------eEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc---
Q psy15235         94 VQSSLFIPRMN-------AITGNYDIEPKY-------KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE---  156 (323)
Q Consensus        94 ~C~~~~~~~~~-------~~~~~~~~~~~~-------~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~---  156 (323)
                      +|.+.+..+..       .....+...+..       ..+.+|+.+.|.|.+.+.+|. ...+.|+++|..+.....   
T Consensus        90 ~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~-~~~v~W~k~g~~l~~~~~~~~  168 (327)
T 2wng_A           90 YCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPR-DITLKWFKNGNELSDFQTNVD  168 (327)
T ss_dssp             EEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSS-CCEEEEEETTEECCCEEEEEE
T ss_pred             EEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCC-CcEEEEEECCEEccccccccc
Confidence            99998865431       111111111111       225679999999999987741 139999999988865110   


Q ss_pred             ---ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC-CCceeeee--EEEecceeeeeceeEEeeCCeEEEEEEEe
Q psy15235        157 ---LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT-TPLAQADF--DVIMKPTAKLVETLTVIEGEKLRLECLVV  230 (323)
Q Consensus       157 ---~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l--~v~~~p~~~~~~~~~~~~g~~~~l~C~~~  230 (323)
                         ....+ .....|.|.....+|.|.|+|.+ .|..+.. .......+  .+..+|.+...... +.+|+.+.|.|.+.
T Consensus       169 ~~~~~~~~-~~~s~L~i~~~~~d~~g~Y~C~a-~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~-~~~G~~v~l~C~~~  245 (327)
T 2wng_A          169 PVGESVSY-SIHSTAKVVLTREDVHSQVICEV-AHVTLQGDPLRGTANLSETIRVPPTLEVTQQP-VRAENQVNVTCQVR  245 (327)
T ss_dssp             CSSCCSCE-EEEEEEEEECCTTGGGCEEEEEE-ECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC-CSSTTCCEEEEEEE
T ss_pred             cccCCCce-EEEEEEEEechhcCcCceEEEEE-eccccCCCcccceEEeccccCCCCEEEEecCC-cCCCCcEEEEEEEc
Confidence               00111 22345777777677789999999 6764331 12223333  45567776644333 77899999999999


Q ss_pred             cC-CCC-cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEE
Q psy15235        231 GS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVR  303 (323)
Q Consensus       231 g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~  303 (323)
                      |. |++ .+.|++||..+.......... ..++ ....+.|.|.++..+|.|.|+|.|.|..|.   .....+.+.
T Consensus       246 g~~p~~~~v~W~k~g~~l~~~~~~~~~~-~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~---~~s~~~~~~  317 (327)
T 2wng_A          246 KFYPQRLQLTWLENGNVSRTETASTVTE-NKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQP---AVSKSHDLK  317 (327)
T ss_dssp             EEBSSCEEEEEEETTEEEEEEECCSCEE-CTTSCEEEEEEEEC-------CCEEEEEEEETTCC---CEEEEEECC
T ss_pred             cccCCCcEEEEEECCeEccCcccCceEE-CCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCC---CchhheEEE
Confidence            85 444 799999999876431111111 0111 112367999999999999999999999965   244444443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=201.74  Aligned_cols=255  Identities=13%  Similarity=0.135  Sum_probs=161.6

Q ss_pred             eceEEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeee-CCeEEEEEeecc--cCcceEEEeeccCCc--
Q psy15235         29 GDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLT-EDNFKYSIHEAI--LESGYVQSSLFIPRM--  103 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~--~~G~Y~C~~~~~~~~--  103 (323)
                      ..+.+.+|++++|.|.+.+.  ++|++++..+...       ...... .....|.|.+++  |+|.|+|.+.+..+.  
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~--v~W~~~~~~~~~~-------~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~   78 (289)
T 3mjg_X            8 PELVLNVSSTFVLTCSGSAP--VVWERMSQEPPQE-------MAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLET   78 (289)
T ss_dssp             SEEECCTTCCEEEEEEESSC--CEEEBTTBCCSEE-------EEECTTSCEEEEEEECSCCGGGCEEEEEECCC------
T ss_pred             CeEEEeCCCcEEEEEeccce--EEEECCCCCcccc-------eeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCc
Confidence            34678999999999997765  9999999887432       111111 113456666655  499999999886644  


Q ss_pred             -cceeeeeeeC-Cc--------e---eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEE
Q psy15235        104 -NAITGNYDIE-PK--------Y---KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI  170 (323)
Q Consensus       104 -~~~~~~~~~~-~~--------~---~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i  170 (323)
                       ......+.+. +.        .   ..+.+|+.+.|.|.+. .+   .+.+.|++++.....    ...+... ..+. 
T Consensus        79 ~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p---~~~v~w~~~~~~~~~----~~~~~~~-~~~~-  148 (289)
T 3mjg_X           79 DERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DP---QLVVTLHEKKGDVAL----PVPYDHQ-RGFS-  148 (289)
T ss_dssp             CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CT---TSCEEEEESSCCSCC----CCCEETT-TEEE-
T ss_pred             CcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CC---CceEEEEeCCCCCcc----ceeecCC-cCee-
Confidence             1222222221 11        1   4477899999999998 45   568888886522221    1111111 1111 


Q ss_pred             eeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe--cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235        171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM--KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF  247 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~--~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~  247 (323)
                         ...|+|.|+|.+ .+..+. .....+.+.|..  +|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++....
T Consensus       149 ---~~~d~G~Y~C~a-~n~~~~-~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~  223 (289)
T 3mjg_X          149 ---GIFEDRSYICKT-TIGDRE-VDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESG  223 (289)
T ss_dssp             ---ECCCSSEEEEEE-EETTEE-EECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSS
T ss_pred             ---eeccCcEEEEEE-EeCCce-eeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCC
Confidence               357999999999 544221 223334566654  45444 3345678899999999999999999999998776543


Q ss_pred             ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      ....................|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l~v~~~~~~~  283 (289)
T 3mjg_X          224 RLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND----HQDEKAINITVVESGH  283 (289)
T ss_dssp             CCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTT----EEEEEEEEEEEEC---
T ss_pred             CcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCC----ceeEEEEEEEEEecCc
Confidence            21111111100101224689999999999999999999999966    7888888887776553

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.97  E-value=1.3e-28  Score=223.41  Aligned_cols=250  Identities=16%  Similarity=0.228  Sum_probs=179.9

Q ss_pred             eceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccc-e
Q psy15235         29 GDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNA-I  106 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~-~  106 (323)
                      ....+..|+++.|.|.+.+ ++.+.|+++|..+...     ..+......+.+.|.-....|+|.|+|.+.+..+... .
T Consensus       297 ~~~~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~  371 (642)
T 1e07_A          297 NSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVS-----PRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD  371 (642)
T ss_pred             CceeEecCCcEEEEEECCCCCccEEEEECCccCCCc-----CCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCccee
Confidence            3344566888999999543 3689999999887553     1122222234444444444559999999998766431 1


Q ss_pred             eeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCC
Q psy15235        107 TGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDD  177 (323)
Q Consensus       107 ~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  177 (323)
                      ...+.+         .+....+..|+.++|.|.+.+.|   .+.+.|+++|..+..           ...|.|.++..+|
T Consensus       372 ~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~i~W~~~g~~~~~-----------~~~L~i~~~~~~d  437 (642)
T 1e07_A          372 PVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNP---PAQYSWLIDGNIQQH-----------TQELFISNITEKN  437 (642)
T ss_pred             eEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccC---CCeEEEEECCEEcCC-----------CceEEEccCChhh
Confidence            111111         23334567899999999999988   689999999988754           3569999999999


Q ss_pred             CeeEEEEEEcCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeee
Q psy15235        178 AGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIK  254 (323)
Q Consensus       178 ~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~  254 (323)
                      +|.|+|.| .|..+....+..+.+.|..   +|.+.......+.+|+.+.|.|.+. .|.+.+.|++++..+... .++.
T Consensus       438 ~G~Y~C~a-~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~-~~~~  514 (642)
T 1e07_A          438 SGLYTCQA-NNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNGQSLPVS-PRLQ  514 (642)
T ss_pred             CeEEEEEE-EcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECC-CCCcEEEEEECCEeCCCC-CcEE
Confidence            99999999 7876555555556666654   4566555566788999999999998 478899999999988643 4444


Q ss_pred             eecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       255 ~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      +..      ....|+|.++..+|+|.|+|.|.|..|.   .....+.|.|...|.
T Consensus       515 ~~~------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~---~~s~~~~l~V~~~p~  560 (642)
T 1e07_A          515 LSN------GNRTLTLFNVTRNDARAYVCGIQNSVSA---NRSDPVTLDVLYGPD  560 (642)
T ss_pred             EcC------CCcEEEEeecChhcCceEEEEeEcCCCC---ccCCCEEEEEEeCCC
Confidence            431      2568999999999999999999999965   123356777765544

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.97  E-value=5.9e-29  Score=231.63  Aligned_cols=256  Identities=17%  Similarity=0.280  Sum_probs=181.9

Q ss_pred             ceEEecCCcEEEEEEe--ccCceEEEEEcCcccee--eccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccc
Q psy15235         30 DTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQ--SSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNA  105 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~  105 (323)
                      ...+.+|+++.|.|.+  .|.+.+.|+|++.....  .......   .....+.+.|.-....|+|.|+|.+.+..+...
T Consensus       257 ~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~  333 (816)
T 3dmk_A          257 MKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDR---VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES  333 (816)
T ss_dssp             EEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSS---EEEETTEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             ceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCc---eEeccceEEECCCCHhHCEEEEEEEEcCCCceE
Confidence            4567899999999994  46789999996543322  1111111   112244444444444559999999998776543


Q ss_pred             eeeeee--------eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCC
Q psy15235        106 ITGNYD--------IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDD  177 (323)
Q Consensus       106 ~~~~~~--------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  177 (323)
                      ....+.        ..+....+..|++++|.|.+.+.+   .+.+.|+++|..+..          ....|.|.+++.+|
T Consensus       334 ~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~v~W~k~g~~~~~----------~~~~L~i~~v~~~d  400 (816)
T 3dmk_A          334 VETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNP---IKTVSWMKDGKAIGH----------SESVLRIESVKKED  400 (816)
T ss_dssp             EEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEEC---CCEEEEEETTEECSC----------CSSEEEESSCCGGG
T ss_pred             EEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccC---CCEEEEEECCEECCC----------CCCEEEEcCCCHHH
Confidence            222222        244455577899999999999887   789999999998865          34679999999999


Q ss_pred             CeeEEEEEEcCCCCCCCCceeeeeEEE---ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCee
Q psy15235        178 AGQYSCRLIDPKSTNTTPLAQADFDVI---MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI  253 (323)
Q Consensus       178 ~G~y~C~~~~~~~~~~~~~~~~~l~v~---~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~  253 (323)
                      +|.|+|.+ .+..+  .......+.|.   .+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++
T Consensus       401 ~G~Y~C~a-~n~~g--~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~-~~~  476 (816)
T 3dmk_A          401 KGMYQCFV-RNDRE--SAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN-DRY  476 (816)
T ss_dssp             CEEEEEEE-ECSSC--EEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSC-TTE
T ss_pred             CEEEEEEE-ECCCC--cEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCC-CCc
Confidence            99999999 67633  23344445543   355555 344567889999999999999999999999999887643 233


Q ss_pred             eeec-CCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        254 KLSE-HPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       254 ~~~~-~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      .... ....+...+.|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.+.|.
T Consensus       477 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~  529 (816)
T 3dmk_A          477 QVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGV----AEHSAKLNVYGLPY  529 (816)
T ss_dssp             EEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEE----EEEEEEEEECSSCE
T ss_pred             ccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCe----EEEEEEEEEecCCe
Confidence            2211 0112223567999999999999999999999966    77888888887663

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=3.3e-29  Score=214.24  Aligned_cols=266  Identities=16%  Similarity=0.222  Sum_probs=176.7

Q ss_pred             EeeceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccC
Q psy15235         27 YFGDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIP  101 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~  101 (323)
                      .+.++.+.+|+.++|.|.+   .+.+.++|+|+|..+.....    ........+  .|.|.++  .|+|.|+|.+.+..
T Consensus        12 ~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~----~~~~~~~~~--~L~i~~~~~~D~G~Y~C~a~n~~   85 (395)
T 1bih_A           12 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH----NAALRKDEG--SLVFLRPQASDEGHYQCFAETPA   85 (395)
T ss_dssp             CCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT----TEEECTTSC--CEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccc----eEEEecCCc--eEEEecCCCCCCcEEEEEEEeCC
Confidence            3566789999999999994   35689999999988766411    111122233  4555554  45999999998865


Q ss_pred             Cccc-----eeeeeeeCC----ceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECC---eeccccccccCcEE-eceeE
Q psy15235        102 RMNA-----ITGNYDIEP----KYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGN---KSITEATELSGRLT-QSKDS  167 (323)
Q Consensus       102 ~~~~-----~~~~~~~~~----~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~---~~~~~~~~~~~~~~-~~~~~  167 (323)
                      +...     +...+...+    ....+.+|+.+.|.|.+ .+.+   .+.+.|++++   .+.........++. .....
T Consensus        86 g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (395)
T 1bih_A           86 GVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYP---KPLITWKKRLSGADPNADVTDFDRRITAGPDGN  162 (395)
T ss_dssp             EEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEES---CCEEEEEEEETTSCGGGCCCCCCTTEEECTTSC
T ss_pred             CeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCC---CCeEEEEecCCCcCcccccccccccEEEcCCCc
Confidence            4431     111111122    22335689999999996 6666   6899999986   22211111133443 44568


Q ss_pred             EEEeeeecCCCe---eEEEEEEcCCCCCCCCceee-eeEEEe----------cceeeeeceeEEeeCCeEEEEEEEecCC
Q psy15235        168 ITIRKTTVDDAG---QYSCRLIDPKSTNTTPLAQA-DFDVIM----------KPTAKLVETLTVIEGEKLRLECLVVGSP  233 (323)
Q Consensus       168 l~i~~~~~~d~G---~y~C~~~~~~~~~~~~~~~~-~l~v~~----------~p~~~~~~~~~~~~g~~~~l~C~~~g~p  233 (323)
                      |.|.++..+|+|   .|+|.+ .+..+........ .+.+..          .|.+ .+....+.+|+.+.|.|.+.|+|
T Consensus       163 L~i~~v~~~d~G~~~~Y~C~a-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~G~~v~l~C~~~g~p  240 (395)
T 1bih_A          163 LYFTIVTKEDVSDIYKYVCTA-KNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAKAGDVTMIYCMYGSNP  240 (395)
T ss_dssp             EEEEEECGGGCCSSEEEEEEE-ECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE-ECCSEEEETTSCEEEEEEEECSS
T ss_pred             EEEEEEeeccCCCceEEEEEE-EecccceEEEeeeEEecccccccccccCCcCcee-cCCceEEECCCcEEEEEEeccCC
Confidence            999999999999   999999 6764332111111 111111          2222 23456788999999999999999


Q ss_pred             CCcEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee-EEEEEEcceecCc
Q psy15235        234 PPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA-FVYVRVKGKSFGY  311 (323)
Q Consensus       234 ~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~-~~~l~v~~~~~~~  311 (323)
                      .+.+.|++++..+.... .++...    .......|.|.++..+|+|.|+|.|.|..|.    ... .+.|.|..+|...
T Consensus       241 ~~~i~W~~~g~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~~l~V~~~P~~~  312 (395)
T 1bih_A          241 MGYPNYFKNGKDVNGNPEDRITRH----NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK----PQKHSLKLTVVSAPKYE  312 (395)
T ss_dssp             CCCCEEEETTEECCCCTTSSEESC----SSSTTSEEEESSCCGGGCEEEEEEECCSSSS----CEEEEEEEEEEEEEEEE
T ss_pred             CCeEEEEECCEEcCCCCceeEEEE----ecCCCceEEEccCChhhCEEEEEEEEeCCCC----ceEEEEEEEEEcCCccc
Confidence            99999999998875432 222211    1113458999999999999999999999865    444 7888887776543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=207.87  Aligned_cols=257  Identities=16%  Similarity=0.165  Sum_probs=172.0

Q ss_pred             eeceEEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCccc
Q psy15235         28 FGDTEIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRMNA  105 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~~~  105 (323)
                      +..+.+.+|++++|.|.+.+.  +.|++++......          ........|.|.+++.  +|.|+|.+.+..+...
T Consensus        11 ~~~~~v~~G~~v~L~C~~~~~--v~W~~~~~~~~~~----------~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~   78 (292)
T 4dkd_C           11 VPELVVKPGATVTLRCVGNGS--VEWDGPPSPHWTL----------YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGS   78 (292)
T ss_dssp             CSSCEECTTCCEEEEEECSSC--CCBCCCCCSSCEE----------CCBTTEEEEEESSCCGGGCSCEEECCCC----CC
T ss_pred             CCeEEEcCCCcEEEEEcCCCc--eEEccCCCCceEE----------eccCceEEEEEcccccccCEEEEEEEccCCCCcc
Confidence            356789999999999997664  9999765432211          1223345677776654  9999999987654433


Q ss_pred             eeeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEE-eceeEEEEeeee
Q psy15235        106 ITGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLT-QSKDSITIRKTT  174 (323)
Q Consensus       106 ~~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~-~~~~~l~i~~~~  174 (323)
                      ....+.+         .+....+.+|+.+.|.|.+.+..+  .+.+.|+++ +..+..    ..++. .....|.|.++.
T Consensus        79 ~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~~~~~----~~~~~~~~~~~L~i~~~~  152 (292)
T 4dkd_C           79 AAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL--EAGVSLVRVRGRPLMR----HTNYSFSPWHGFTIHRAK  152 (292)
T ss_dssp             EEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGG--GSSEEEEEGGGCCCCS----SCCEECCSSSCCEETTCC
T ss_pred             eEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCc--ceeEEEEecCCCcccc----CCcccccCCceEEECCCC
Confidence            2222222         333445778999999999987331  268999997 555544    34443 334559999999


Q ss_pred             cCCCeeEEEEEEcCCCCCCCCceeeeeEEEe----cceeeee-ceeEEeeCCeEEEEEEEecCCC-CcEEEEECCeeeec
Q psy15235        175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIM----KPTAKLV-ETLTVIEGEKLRLECLVVGSPP-PTVEWRIGNDTYFR  248 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----~p~~~~~-~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~~~~~~~~  248 (323)
                      .+|+|.|+|.+ .+..+. ..+..+.|.|..    +|.+... ....+.+|+.+.|.|.+.+.|+ +.+.|++++..+..
T Consensus       153 ~~d~G~Y~C~a-~n~~~~-~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~  230 (292)
T 4dkd_C          153 FIQSQDYQCSA-LMGGRK-VMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAI  230 (292)
T ss_dssp             GGGCSEEEEEE-CSTTSC-EECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCC
T ss_pred             HHHCeEEEEEE-EeCCCc-eeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCccccc
Confidence            99999999999 665322 234567788876    6766643 3445578999999999988765 46889888876543


Q ss_pred             cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      ... ....  .......+.|+|.++..+|+|.|+|.|.|..|.    ....+.|.|.++....
T Consensus       231 ~~~-~~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~~~~~~  286 (292)
T 4dkd_C          231 PQQ-SDFH--NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGK----HSTSMFFRVVESAGNS  286 (292)
T ss_dssp             CBE-EEEE--TTEEEEEEEEEESSCCTTSCEEEEEEEECSSCE----EEEEEEECC-------
T ss_pred             Ccc-ceec--cceeeeEEEEEECccChhcCeEEEEEEecCCCC----ceeEEEEEEeeCCCcc
Confidence            221 1111  000113468999999999999999999999965    8888999888876554

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=5.6e-31  Score=220.71  Aligned_cols=264  Identities=15%  Similarity=0.231  Sum_probs=179.1

Q ss_pred             EEEeeceEEecCCcEEEEEEec---------cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEE
Q psy15235         25 ITYFGDTEIMEGAPINISCILT---------IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQ   95 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~---------~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C   95 (323)
                      ...+..+.+.+|++++|.|.+.         +.+.+.|+++|..+..........   ....+.+.|......|+|.|+|
T Consensus        22 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C   98 (339)
T 3o4o_C           22 GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM---WAQDGALWLLPALQEDSGTYVC   98 (339)
T ss_dssp             EECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCE---EEETTEEEESSBCTTCCEEEEC
T ss_pred             CcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccE---EeeCCeEEECCCCcccCEEEEE
Confidence            3445678899999999999964         346899999998753321111111   1234444444444455999999


Q ss_pred             EeeccCCccceeeeeee--CC--------ceeEEecCCcEEEEEE-----eecCCCCCCceEEEEECCeeccccccccCc
Q psy15235         96 SSLFIPRMNAITGNYDI--EP--------KYKVFEYRVPFTLKCN-----VTSPPPGDDYQIVWYKGNKSITEATELSGR  160 (323)
Q Consensus        96 ~~~~~~~~~~~~~~~~~--~~--------~~~~~~~g~~v~l~C~-----~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~  160 (323)
                      .+.+..+.......+.+  .+        ....+..|+.+.|.|.     +.+.+   .+.+.|++++..+...   ..+
T Consensus        99 ~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p---~~~v~W~k~g~~~~~~---~~~  172 (339)
T 3o4o_C           99 TTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKT---DVKIQWYKDSLLLDKD---NEK  172 (339)
T ss_dssp             CEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSS---CCCBCCEESSCBCCTT---CSS
T ss_pred             EEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCC---CceEEEecCCeeCCCC---Cce
Confidence            99987665443333333  11        1235778999999999     67766   6899999999888651   234


Q ss_pred             EE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCC--CceeeeeEEEe-----cceee-eeceeEEeeCCeEEEEEEE-
Q psy15235        161 LT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT--PLAQADFDVIM-----KPTAK-LVETLTVIEGEKLRLECLV-  229 (323)
Q Consensus       161 ~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~~~~l~v~~-----~p~~~-~~~~~~~~~g~~~~l~C~~-  229 (323)
                      +.  .....|.|.++..+|+|.|+|.+ .|..+...  ....+.|.|..     +|.+. .+....+.+|+.+.|.|.+ 
T Consensus       173 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~  251 (339)
T 3o4o_C          173 FLSVRGTTHLLVHDVALEDAGYYRCVL-TFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVF  251 (339)
T ss_dssp             EEECTTSSEEEESSCCGGGCEEEEEEE-ECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEE
T ss_pred             eEEcCCcceEEEcccCHhhCeEEEEEE-EECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEE
Confidence            44  33458999999999999999999 67643322  34456666653     34444 3334567889999999999 


Q ss_pred             --ecCC-CCcEEEEECCeeeeccC--------CeeeeecCCCC-CCcceeEEEeecCcCCC-eEEEEEEeecccCCCCCc
Q psy15235        230 --VGSP-PPTVEWRIGNDTYFRSQ--------GRIKLSEHPEK-GTANSVLQIDEATMADR-GNYYCHGNNVATRNSQPN  296 (323)
Q Consensus       230 --~g~p-~~~~~W~~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~L~i~~v~~~d~-G~y~C~a~n~~g~~~~~~  296 (323)
                        .|+| .+.+.|++++..+....        .++...  ..+ ....+.|.|.+++.+|. |.|+|.|.|..|.    .
T Consensus       252 ~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~----~  325 (339)
T 3o4o_C          252 LGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYS--ENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF----Q  325 (339)
T ss_dssp             ESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECC--CSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEE----E
T ss_pred             CCCCCCCCceEEEEECCeecccccccccceecceEEec--ccCceEEEEEEEEEEechhhcCccEEEEEEeccCc----e
Confidence              8998 78999999987754221        111111  111 01123899999999997 9999999999976    5


Q ss_pred             eeEEEEEE
Q psy15235        297 EAFVYVRV  304 (323)
Q Consensus       297 ~~~~~l~v  304 (323)
                      ...+.+.+
T Consensus       326 ~~~~~~~~  333 (339)
T 3o4o_C          326 TLRTTVKE  333 (339)
T ss_dssp             CCBCCCCC
T ss_pred             EEEEEhhH
Confidence            55554443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.97  E-value=1.3e-28  Score=199.07  Aligned_cols=231  Identities=15%  Similarity=0.174  Sum_probs=162.8

Q ss_pred             ceEEecCCcEEEEEEec---cCc--eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEe---ecccCc--ceEEEeec
Q psy15235         30 DTEIMEGAPINISCILT---IFE--QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIH---EAILES--GYVQSSLF   99 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~~---~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~G--~Y~C~~~~   99 (323)
                      +..+.+|++++|.|.+.   |.+  .++|+++|..+...         .......+.+...   ...|+|  .|+|.+.+
T Consensus        12 ~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~---------~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n   82 (265)
T 2oz4_A           12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT---------VTYGNDSFSAKASVSVTAEDEGTQRLTCAVIL   82 (265)
T ss_dssp             CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE---------EEECSSEEEEEEEEEECGGGCEEEEEEEEEEE
T ss_pred             CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce---------EeeCCCeEEEEeecccccccCCcceEEEEEec
Confidence            34789999999999954   334  99999999877652         1122333333333   446666  59999998


Q ss_pred             cCCccceeeeeee--CC------ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEe
Q psy15235        100 IPRMNAITGNYDI--EP------KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR  171 (323)
Q Consensus       100 ~~~~~~~~~~~~~--~~------~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~  171 (323)
                      ..+.......+.+  .+      ....+.+|+.++|.|.+.  +   .+.+.|  +|..+..    .    .....|.|.
T Consensus        83 ~~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p---~~~i~W--~g~~~~~----~----~~~~~l~i~  147 (265)
T 2oz4_A           83 GNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--P---RAKVTL--NGVPAQP----L----GPRAQLLLK  147 (265)
T ss_dssp             TTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--T---TSEEEE--SSCSSSC----C----SSEECCEEE
T ss_pred             CCCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--C---CCEEEE--CCEEccC----C----CCcEEEEEc
Confidence            7665433333333  11      122366799999999998  4   689999  7777643    1    234568888


Q ss_pred             eeecCCCeeEEEEEEcCCCCCC-CCceeeeeEEEecceeee---eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTNT-TPLAQADFDVIMKPTAKL---VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF  247 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~~p~~~~---~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~  247 (323)
                      .+..+|+|.|+|.+..+..+.. .....+.|.|..+|.+..   +....+.+|+.+.|.|.+.|+|.|.+.|++++..+.
T Consensus       148 ~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~  227 (265)
T 2oz4_A          148 ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL  227 (265)
T ss_dssp             CCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEEC
T ss_pred             cccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccC
Confidence            8999999999999932331221 123667788888876652   335678999999999999999999999999987322


Q ss_pred             ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      .                ...+  ..++.+|+|.|+|.|.|..|.    ....+.|.|..
T Consensus       228 ~----------------~g~~--~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~~  264 (265)
T 2oz4_A          228 P----------------IGES--VTVTRDLEGTYLCRARSTQGE----VTREVTVNVLS  264 (265)
T ss_dssp             C----------------TTSC--EECCGGGCEEEEEEEEETTEE----EEEEEEEEEEC
T ss_pred             C----------------CCcE--EEeehhhCeEEEEEEECCCCc----EEEEEEEEEec
Confidence            1                1122  247889999999999999966    78888888864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.97  E-value=1.1e-28  Score=229.83  Aligned_cols=247  Identities=20%  Similarity=0.288  Sum_probs=186.3

Q ss_pred             eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCCc
Q psy15235         28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPRM  103 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~  103 (323)
                      +....+.+|++++|.|.+  .|.+.++|+++|..+...             ..  .|.|.++  .|+|.|+|.+.+..+.
T Consensus       350 ~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~-------------~~--~L~i~~v~~~d~G~Y~C~a~n~~g~  414 (816)
T 3dmk_A          350 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------------ES--VLRIESVKKEDKGMYQCFVRNDRES  414 (816)
T ss_dssp             SSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------------SS--EEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCC-------------CC--EEEEcCCCHHHCEEEEEEEECCCCc
Confidence            345678899999999994  567899999999877553             22  3555554  4599999999987665


Q ss_pred             cceeeeeee-----------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---------e
Q psy15235        104 NAITGNYDI-----------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---------Q  163 (323)
Q Consensus       104 ~~~~~~~~~-----------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---------~  163 (323)
                      ......+.+           .+....+.+|+.+.|.|.+.+.|   .+.+.|+++|..+..    ..++.         .
T Consensus       415 ~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p---~p~v~W~~~g~~l~~----~~~~~~~~~~~~~~~  487 (816)
T 3dmk_A          415 AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNP---TPEISWELDGKKIAN----NDRYQVGQYVTVNGD  487 (816)
T ss_dssp             EEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSS---CCEEEEEETTEECCS----CTTEEEEEEECTTSC
T ss_pred             EEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCC---CCEEEEEECCEECCC----CCCcccccEEecCCC
Confidence            432222221           22334467899999999999988   789999999998866    33332         1


Q ss_pred             ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECC
Q psy15235        164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN  243 (323)
Q Consensus       164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~  243 (323)
                      ....|.|.++..+|+|.|+|.+ .|..  +.......|.|..+|.+.......+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus       488 ~~~~L~i~~v~~~d~G~Y~C~a-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~  564 (816)
T 3dmk_A          488 VVSYLNITSVHANDGGLYKCIA-KSKV--GVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDN  564 (816)
T ss_dssp             EEEEEEESSCCTTTCEEEEEEE-EETT--EEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETT
T ss_pred             cEEEEEEeeccccCCEEEEEEE-EECC--CeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECC
Confidence            2346999999999999999999 6763  335667788888888777666778889999999999999998899999999


Q ss_pred             eeeeccCCeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      ..+... .+....       ...+|.|.++. .+|+|.|+|.|.|..|.   .....+.|.|...|..
T Consensus       565 ~~l~~~-~~~~~~-------~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~---~~~~~~~v~v~~~p~~  621 (816)
T 3dmk_A          565 RALPIN-RKQKVF-------PNGTLIIENVERNSDQATYTCVAKNQEGY---SARGSLEVQVMVLPRI  621 (816)
T ss_dssp             EESCCS-TTEEEC-------TTSEEEESSCCHHHHCEEEEEEEEESSSC---EEEEEEEEEEECCCCC
T ss_pred             eEcccC-CceEEe-------cCCeEEEEecCccccCEEEEEEEEECCCc---eeeeeEEEEEecCCcc
Confidence            887543 333333       35689999998 68999999999999864   2455667777665544

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.97  E-value=2.6e-29  Score=214.04  Aligned_cols=259  Identities=17%  Similarity=0.275  Sum_probs=176.0

Q ss_pred             EeeceEE---ecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec-ccCcceEEEeecc
Q psy15235         27 YFGDTEI---MEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA-ILESGYVQSSLFI  100 (323)
Q Consensus        27 ~~~~~~v---~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~G~Y~C~~~~~  100 (323)
                      .|.+..+   .+|+.++|.|.+  .|.+.+.|+|+|..+.... ...  +  ....+.+.+..... .|+|.|+|.+.+.
T Consensus        10 ~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~-~~~--~--~~~~~~L~i~~~~~~~D~G~Y~C~a~n~   84 (382)
T 1cs6_A           10 QPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP-DSR--Y--RLVAGDLVISNPVKAKDAGSYQCVATNA   84 (382)
T ss_dssp             CCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCST-TSS--E--EEETTEEEEESCCHHHHCEEEEEEEEET
T ss_pred             CCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCC-Ccc--E--EeeCCeEEEecccccccCEEEEEEEEcC
Confidence            3444554   689999999994  4678999999998876531 111  1  12244444433332 5699999999986


Q ss_pred             CCcc-----ceeeeeee-----CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-E-eceeEE
Q psy15235        101 PRMN-----AITGNYDI-----EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-T-QSKDSI  168 (323)
Q Consensus       101 ~~~~-----~~~~~~~~-----~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~-~~~~~l  168 (323)
                      .+..     .+.+....     .+....+.+|+.++|.|.+....|  .+.+.|++++..+...  .+.+. . .....|
T Consensus        85 ~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p--~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~L  160 (382)
T 1cs6_A           85 RGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYP--ALSYRWLLNEFPNFIP--ADGRRFVSQTTGNL  160 (382)
T ss_dssp             TEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEES--CCEEEEEESSTTCBCC--CCSSEEECTTTCCE
T ss_pred             CcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCC--CcEEEEEECCCccccc--cCceEEEecCceEE
Confidence            5532     11111111     233455788999999998654333  6799999998765321  12222 2 345689


Q ss_pred             EEeeeecCCCeeEEEEEEcCCCCCCCC---ceeeeeEEE------ecceee--eeceeEEeeCCeEEEEEEEecCCCCcE
Q psy15235        169 TIRKTTVDDAGQYSCRLIDPKSTNTTP---LAQADFDVI------MKPTAK--LVETLTVIEGEKLRLECLVVGSPPPTV  237 (323)
Q Consensus       169 ~i~~~~~~d~G~y~C~~~~~~~~~~~~---~~~~~l~v~------~~p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~  237 (323)
                      .|.+++.+|+|.|+|.+ .+..+....   .....+.+.      .+|.+.  .+....+.+|+.+.|.|.+.|.|.+.+
T Consensus       161 ~i~~~~~~d~G~Y~C~~-~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i  239 (382)
T 1cs6_A          161 YIAKTEASDLGNYSCFA-TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI  239 (382)
T ss_dssp             EESSCCGGGCEEEEEEE-EEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEE
T ss_pred             EEEeeCcccCeeEEEEE-EEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEE
Confidence            99999999999999999 555321111   222334432      244443  244667889999999999999999999


Q ss_pred             EEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       238 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      .|++++..+..   ...        .....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|..+|..
T Consensus       240 ~W~~~~~~~~~---~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~  297 (382)
T 1cs6_A          240 KWRKLDGSQTS---KWL--------SSEPLLHIQNVDFEDEGTYECEAENIKGR----DTYQGRIIIHAQPDW  297 (382)
T ss_dssp             EEEECCSCCSC---CCS--------BSSSEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEEEEEEE
T ss_pred             EEEECCccccc---EEe--------cCCcEEEEccCChhhCEEEEEEEEcCCCe----EEEEEEEEEecCCCc
Confidence            99998876532   111        13678999999999999999999999966    677788888776654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.96  E-value=4.4e-29  Score=213.03  Aligned_cols=263  Identities=15%  Similarity=0.210  Sum_probs=175.0

Q ss_pred             ceEEecCCcEEEEEEe--ccCceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeeccc------CcceEEEeecc
Q psy15235         30 DTEIMEGAPINISCIL--TIFEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL------ESGYVQSSLFI  100 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~--~~~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~------~G~Y~C~~~~~  100 (323)
                      .+.+.+|+.++|.|.+  .|.+.++|++ +|..+....  ....   ...++.+.|......|      +|.|+|.+.+.
T Consensus        13 ~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~--~~~~---~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~   87 (388)
T 2v5m_A           13 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP--GLRQ---ISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQ   87 (388)
T ss_dssp             EEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBT--TTBE---ECSTTEEEECCCCGGGCCHHHHEEEEEEEEEET
T ss_pred             eEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCC--CceE---EcCCceEEecccChhhccccccCceEEEEEEcc
Confidence            3568899999999994  5678999999 777765431  1111   1234444433333344      89999999987


Q ss_pred             CCcc---ceeeeee------eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc-cccccCcEE-eceeEEE
Q psy15235        101 PRMN---AITGNYD------IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-ATELSGRLT-QSKDSIT  169 (323)
Q Consensus       101 ~~~~---~~~~~~~------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-~~~~~~~~~-~~~~~l~  169 (323)
                      .+..   .+.....      ..+....+.+|+.++|.|.+.+.++...+.+.|++++..+.. ......++. .....|.
T Consensus        88 ~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~  167 (388)
T 2v5m_A           88 FGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH  167 (388)
T ss_dssp             TEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEE
T ss_pred             CCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEE
Confidence            6542   1111111      133445578899999999998865311379999999876533 112233443 4456899


Q ss_pred             EeeeecCCC-eeEEEEEEcCCCCCCC--CceeeeeEEEec-----ceee--eeceeEEeeCCeEEEEEEEecCCCCcEEE
Q psy15235        170 IRKTTVDDA-GQYSCRLIDPKSTNTT--PLAQADFDVIMK-----PTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEW  239 (323)
Q Consensus       170 i~~~~~~d~-G~y~C~~~~~~~~~~~--~~~~~~l~v~~~-----p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W  239 (323)
                      |.+++.+|+ |.|+|.+ .+..+...  ......+.|..+     |...  ......+.+|+.+.|.|.+.|+|.+.+.|
T Consensus       168 i~~v~~~d~~G~Y~C~~-~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W  246 (388)
T 2v5m_A          168 IREVGPEDGYKSYQCRT-KHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRW  246 (388)
T ss_dssp             ESSCCGGGGGCCEEEEE-EETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEE
T ss_pred             EecCCccccCeeEEEEe-ccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEE
Confidence            999999999 9999999 55422211  111234555543     2111  12235578899999999999999999999


Q ss_pred             EECCeeee-----ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        240 RIGNDTYF-----RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       240 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      ++++....     ....++..        ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|..+|..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~  310 (388)
T 2v5m_A          247 YKFIEGTTRKQAVVLNDRVKQ--------VSGTLIIKDAVVEDSGKYLCVVNNSVGG----ESVETVLTVTAPLSA  310 (388)
T ss_dssp             EEECTTSSCEEECCCSSSEEE--------ETTEEEESSCCGGGCEEEEEEEECSSCE----EEEEEEEEEEEEEEE
T ss_pred             EecCCCCcccccccccCceec--------ccCEEEECcCCHHHCeEEEEEEecCCCc----eeEEEEEEEeCCCcc
Confidence            99754321     11122222        2578999999999999999999999965    677788888776553

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.96  E-value=7.3e-28  Score=213.40  Aligned_cols=272  Identities=17%  Similarity=0.179  Sum_probs=172.0

Q ss_pred             eEEEeeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceeecc-------CcceEEEeeeeCCeEEEEEeeccc--C
Q psy15235         24 KITYFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQSSV-------DSGFAATANLTEDNFKYSIHEAIL--E   90 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~--~   90 (323)
                      .+..+..+.+.+|++++|.|.+.  +.+.+.|+|++  ..+.....       .....+..........|.|.+++.  +
T Consensus         3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (523)
T 2rcj_C            3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE   82 (523)
T ss_pred             ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence            34556778899999999999954  56899999964  22221100       001112233345566788887765  9


Q ss_pred             cceEEEeeccCCcc-------cee--------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc
Q psy15235         91 SGYVQSSLFIPRMN-------AIT--------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT  155 (323)
Q Consensus        91 G~Y~C~~~~~~~~~-------~~~--------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~  155 (323)
                      |.|+|.+.+..+..       .+.        |.+.+.+....+.+|+.++|.|.+.+.+|. .+.|+|+++|..+....
T Consensus        83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~  161 (523)
T 2rcj_C           83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPG-AVTVAWKADGSPVKAGV  161 (523)
T ss_pred             EEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCC-ceEEEEecCCCCCCCce
Confidence            99999998864321       111        112222222234568999999999988742 24999999998876411


Q ss_pred             cccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE----EEecceee-eeceeEEeeCCeEE
Q psy15235        156 ELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD----VIMKPTAK-LVETLTVIEGEKLR  224 (323)
Q Consensus       156 ~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~----v~~~p~~~-~~~~~~~~~g~~~~  224 (323)
                      .......      .....|.|.++..+|+|.|+|.+ .|..+..  ...+.+.    +..+|.+. ..+...+.+|+.+.
T Consensus       162 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a-~n~~~~~--~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~  238 (523)
T 2rcj_C          162 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQV-THEGSTV--EKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAA  238 (523)
T ss_pred             EeccccccCCCCEEEEEEEEEechhcCCCceEEEEE-EecCccc--ccceeeeecCCCCcCCEEEecCCCcccccCCceE
Confidence            1100000      12346999999999999999999 6764332  2222221    12345444 33344567899999


Q ss_pred             EEEEEecC-CCC-cEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        225 LECLVVGS-PPP-TVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       225 l~C~~~g~-p~~-~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                      |.|.+.|. |.| .+.|++++..+.... .+....  .......+.|.|.++..+| |.|+|.|.|..|.    ....+.
T Consensus       239 l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~--~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~----~~~~~~  311 (523)
T 2rcj_C          239 LGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQS--SGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKR  311 (523)
T ss_pred             EEEEEeceeCCCeEEEEecCCcccceEeCCcEecC--CCcEEEEEEEEechhhcCC-ceEEEEEEeCCCC----cceEEe
Confidence            99999886 877 899999997653211 111100  0011134689999999999 9999999999966    444555


Q ss_pred             EEEcc
Q psy15235        302 VRVKG  306 (323)
Q Consensus       302 l~v~~  306 (323)
                      |.|..
T Consensus       312 l~v~~  316 (523)
T 2rcj_C          312 VEPLS  316 (523)
T ss_pred             cCCCc
Confidence            54443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.96  E-value=5.3e-28  Score=213.18  Aligned_cols=258  Identities=13%  Similarity=0.101  Sum_probs=163.3

Q ss_pred             eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCc
Q psy15235         28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRM  103 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~  103 (323)
                      +.++.|.+|++++|.|.+  .+...+.|++++..+.....     +. ....+...|.|.+++.  +|.|+|.+.+..+.
T Consensus        55 ~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~-----~~-~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~  128 (527)
T 3qs9_E           55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH-----FD-LQNRGVVSMVILKMTETQAGEYLLFIQSEATN  128 (527)
T ss_dssp             -CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB-----C------CEEEEEESSCCSSSCSEEEEEEEC--CE
T ss_pred             eeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccc-----cC-CCcceEEEEEECcCChhhCeeEEEEEEecccc
Confidence            346889999999999995  34568999999876544210     00 1113445677877665  99999999987766


Q ss_pred             cceeeeeeeCC-------ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecC
Q psy15235        104 NAITGNYDIEP-------KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVD  176 (323)
Q Consensus       104 ~~~~~~~~~~~-------~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  176 (323)
                      ......+.+.+       .......++.+.|.|.+.|.|   .+.|.|++++..+..    ...............+..+
T Consensus       129 ~~~~~~v~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P---~P~i~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  201 (527)
T 3qs9_E          129 YTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP---EPIVEWVLCDSQGES----CKEESPAVVKKEEKVLHEL  201 (527)
T ss_dssp             EEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESS---CCEEEEEEC-----------------CEEECCSEECCC
T ss_pred             EEEEEEEEECCceeeccCCCcEEecCCceEEEEEEceec---CCeEEEEECCCCCcc----ccccCCcEEEEeeeecccc
Confidence            54433333321       122345578889999999998   799999998876532    1111111112223334578


Q ss_pred             CCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeeeccCCeeee
Q psy15235        177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKL  255 (323)
Q Consensus       177 d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~  255 (323)
                      |+|.|+|.| .|..+... ...+.|.|..+|.. .+....+.+|+.+.|.|.+. |.|.+.+.|++++..+.... .+..
T Consensus       202 d~G~Y~C~A-~N~~G~~~-~~~~~l~V~~~p~~-~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~-~~~~  277 (527)
T 3qs9_E          202 FGTDIRCCA-RNELGREC-TRLFTIDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN-YFEM  277 (527)
T ss_dssp             CSSCEEEEE-ECSSCEEE-EECEEEESSSCCCC-SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGG-EEEE
T ss_pred             CCEEEEEEE-EeCCCccc-ceEEEEEEeccCcc-CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCc-eeee
Confidence            999999999 77643322 23356666666655 34467788999999999996 89999999999998765331 1111


Q ss_pred             ecCCCC--CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        256 SEHPEK--GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       256 ~~~~~~--~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      ......  .....+|.|.+++.+|+|.|+|.|.|.       ....+.|.|..+|.
T Consensus       278 ~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~-------~~~~~~L~V~~~p~  326 (527)
T 3qs9_E          278 STYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-------PSQSALVTIVEKGF  326 (527)
T ss_dssp             EEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE-------EEEEEEEEEC--CE
T ss_pred             eeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC-------CCceEEEEEEccCc
Confidence            100000  113467999999999999999999987       23566677766543

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.96  E-value=3.4e-28  Score=205.70  Aligned_cols=224  Identities=11%  Similarity=0.067  Sum_probs=157.5

Q ss_pred             eceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccce
Q psy15235         29 GDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAI  106 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~~  106 (323)
                      ....+.+|++++|.|.+  .|.+.++|+++|..+...             ...+.|......|+|.|+|.+.+..+....
T Consensus       104 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~  170 (363)
T 1wio_A          104 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG-------------GKTLSVSQLELQDSGTWTCTVLQNQKKVEF  170 (363)
T ss_dssp             SCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEE-------------SSEEEECSBCGGGCEECEEEEEETTEEEEE
T ss_pred             CceEEecCCCEEEEEEcCCCCCCeEEEEcCCCccccc-------------ceEEEEeeCChhcCCEEEEEEecCCCeEEE
Confidence            33468899999999994  466899999988655322             333444444445699999999876554433


Q ss_pred             eeeeee-----CCceeEEecCCcEEEEEEeec-----CCCCCCceEEEEECCeeccccc----cccCcEE----------
Q psy15235        107 TGNYDI-----EPKYKVFEYRVPFTLKCNVTS-----PPPGDDYQIVWYKGNKSITEAT----ELSGRLT----------  162 (323)
Q Consensus       107 ~~~~~~-----~~~~~~~~~g~~v~l~C~~~~-----~~~~~~~~i~W~~~~~~~~~~~----~~~~~~~----------  162 (323)
                      ...+.+     .+....+.+|+.+.|.|.+.+     .|   .+.+.|+++|..+....    ....++.          
T Consensus       171 ~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P---~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (363)
T 1wio_A          171 KIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTG---SGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKL  247 (363)
T ss_dssp             CCEECEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCE---EEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCC
T ss_pred             EEEEEEecCCCCCCceEEecCCEEEEEEEEecccccCCC---ceeEEEecCCCCccceEEEEEecCCeeeccccccchhh
Confidence            333332     223345778999999998877     55   68999999998765310    0012221          


Q ss_pred             ----eceeEEEEeeeecCCCeeEEEEEEcCC--CCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCc
Q psy15235        163 ----QSKDSITIRKTTVDDAGQYSCRLIDPK--STNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT  236 (323)
Q Consensus       163 ----~~~~~l~i~~~~~~d~G~y~C~~~~~~--~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~  236 (323)
                          .....|.|.++..+|+|.|+|.| .|.  .+  .....+.|.|..            ..|+.+.|.|.+.|.|+|.
T Consensus       248 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~n~~~~g--~~~~~~~l~V~~------------v~g~~~~l~C~~~g~p~p~  312 (363)
T 1wio_A          248 QMGKKLPLHLTLPQALPQYAGSGNLTL-ALEAKTG--KLHQEVNLVVMR------------ATQLQKNLTCEVWGPTSPK  312 (363)
T ss_dssp             BCCSSSSCEEEESSBCGGGCEEEEEEE-CBTTTTC--CEEEEEEEEEEE------------ECCCSSSEEEEEESSCCTT
T ss_pred             hcccCCceEEEEccCCcCcCcEEEEEE-EEhhhcC--eEEEEEeEEEEE------------ecCCCeeEEEEEccccCCC
Confidence                11448999999999999999999 676  43  344455555541            1289999999999998887


Q ss_pred             --EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        237 --VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       237 --~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                        +.|++++..+..                ...|.|.++..+|+|.|+|.|.|.. .    ......|.|
T Consensus       313 ~~i~W~~~~~~~~~----------------~~~l~i~~v~~~d~G~Y~C~a~~~~-~----~~~~~~~~V  361 (363)
T 1wio_A          313 LMLSLKLENKEAKV----------------SKREKAVWVLNPEAGMWQCLLSDSG-Q----VLLESNIKV  361 (363)
T ss_dssp             CCEEEECSSSSCSE----------------EESSSEEEESSCCSEEEEEEECSSS-S----CCEEEEEEE
T ss_pred             ccEEEEeCCCceee----------------eeeeeeeeeccccceeEEEEEecCC-e----EEEecceEe
Confidence              999999976642                3557789999999999999999644 2    445555544

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.96  E-value=1.1e-26  Score=208.74  Aligned_cols=267  Identities=16%  Similarity=0.229  Sum_probs=177.5

Q ss_pred             eceEEecCCcEEEEEEe-ccC---ceEEEE-EcCccce---eec------cCcceEEEeeeeCCeEEEEEeeccc--Ccc
Q psy15235         29 GDTEIMEGAPINISCIL-TIF---EQVKWQ-LNGRNIN---QSS------VDSGFAATANLTEDNFKYSIHEAIL--ESG   92 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~-~~~---~~v~W~-~~g~~~~---~~~------~~~~~~~~~~~~~~~~~l~i~~~~~--~G~   92 (323)
                      ..+.+.+|+.+.|.|.+ .+.   +.+.|+ ++|....   ...      ...+..+......+.+.|.|.+++.  +|.
T Consensus       225 ~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~  304 (585)
T 2ocw_A          225 ELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGR  304 (585)
T ss_pred             ceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEE
Confidence            34567899999999994 333   678897 7774322   110      0111111111225555677777654  999


Q ss_pred             eEEEeeccCCccc----eeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceE----EEEE--CCe--ecc
Q psy15235         93 YVQSSLFIPRMNA----ITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQI----VWYK--GNK--SIT  152 (323)
Q Consensus        93 Y~C~~~~~~~~~~----~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i----~W~~--~~~--~~~  152 (323)
                      |+|.+.+......    ....+.+        .+....+.+|+.+.|.|.+.+.+   .+.+    +|++  +|.  .+.
T Consensus       305 Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p---~p~i~~w~~W~~~~~g~~~~l~  381 (585)
T 2ocw_A          305 YLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE---SKSIKYWCLWEGAQNGRCPLLV  381 (585)
T ss_pred             EEEEEEcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCC---CccEEEEEEEEccCCCCCceee
Confidence            9999998533221    2222222        33444577899999999999887   5655    8999  876  443


Q ss_pred             cc-----ccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe-cceeeeeceeEEeeC
Q psy15235        153 EA-----TELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM-KPTAKLVETLTVIEG  220 (323)
Q Consensus       153 ~~-----~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~g  220 (323)
                      ..     .....++.      .....|.|.+++.+|+|.|+|.+ +..   ......+.|.|.. +|.+..+....+.+|
T Consensus       382 ~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~---g~~~~~~~l~V~~~~p~~~~~~~~~v~~G  457 (585)
T 2ocw_A          382 DSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGD---TLWRTTVEIKIIEGEPNLKVPGNVTAVLG  457 (585)
T ss_pred             eecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCC---CccceeEEEEEecCccccccCCceeEecC
Confidence            21     11123332      12245999999999999999988 433   3346677777766 455556667789999


Q ss_pred             CeEEEEEEEe----cCCCCcEEEEECCeeeeccCCe-----eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        221 EKLRLECLVV----GSPPPTVEWRIGNDTYFRSQGR-----IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       221 ~~~~l~C~~~----g~p~~~~~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +.+.|.|.+.    +.|.+.+.|+++|..+......     +...   ........|+|.++..+|+|.|+|.|.|..|.
T Consensus       458 ~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  534 (585)
T 2ocw_A          458 ETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNC---DENSRLVSLTLNLVTRADEGWYWCGVKQGHFY  534 (585)
T ss_pred             CcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEe---cCcccEEEEEECCCCcccCeEEEEEeEeCCCc
Confidence            9999999996    6677899999999876533211     1111   01113479999999999999999999999965


Q ss_pred             CCCCceeEEEEEEccee
Q psy15235        292 NSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       292 ~~~~~~~~~~l~v~~~~  308 (323)
                         .....+.|.|.++|
T Consensus       535 ---~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          535 ---GETAAVYVAVEERK  548 (585)
T ss_pred             ---cEEEEEEEEEEeee
Confidence               13355889998887

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.96  E-value=1.1e-26  Score=201.27  Aligned_cols=252  Identities=14%  Similarity=0.185  Sum_probs=163.5

Q ss_pred             EeeceEEecCCcEEEEEEeccC------ceEEEEEcC--ccceee---------ccCcceEEEeeeeCCeEEEEEeeccc
Q psy15235         27 YFGDTEIMEGAPINISCILTIF------EQVKWQLNG--RNINQS---------SVDSGFAATANLTEDNFKYSIHEAIL   89 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~~~------~~v~W~~~g--~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~   89 (323)
                      .+..+.+.+|++++|.|.+.+.      +.+.|+|++  ..+...         ....+  +......+...|.|.+++.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~   84 (438)
T 1qgc_4            7 SPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDR--FSGSGSRTDFTLTIDPVEA   84 (438)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTT--EEEEEETTEEEEEESSCCG
T ss_pred             cCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCc--EEEEccCCcEEEEeCCCcC
Confidence            3677889999999999995533      379999963  332210         01111  2223345667788887754


Q ss_pred             --CcceEEEeeccCCcc---ceeeeeee---CCceeEE------ecCCcEEEEEEeecCCCCCCc-eEEEEECCeecccc
Q psy15235         90 --ESGYVQSSLFIPRMN---AITGNYDI---EPKYKVF------EYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEA  154 (323)
Q Consensus        90 --~G~Y~C~~~~~~~~~---~~~~~~~~---~~~~~~~------~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~  154 (323)
                        +|.|+|.+.+..+..   .....+..   .|.+...      .+|+.++|.|.+.+.+|  .+ .|.|+++|..+...
T Consensus        85 ~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p--~~~~v~W~k~g~~~~~~  162 (438)
T 1qgc_4           85 DDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYP--KDINVKWKIDGSERQNG  162 (438)
T ss_dssp             GGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS--SCEEEEEEETTEEECTT
T ss_pred             cCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccC--CCcEEEEEECCEEcCCC
Confidence              999999998865421   11111111   2332221      24789999999988443  45 99999999887652


Q ss_pred             cc--------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeE
Q psy15235        155 TE--------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKL  223 (323)
Q Consensus       155 ~~--------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~  223 (323)
                      ..        .+..+ .....|.|.++..+|+|.|+|.+ .|..+..    .+.+.+..   .+.+..+....+.+|+.+
T Consensus       163 ~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a-~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~G~~v  236 (438)
T 1qgc_4          163 VLNSWTDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THKTSTS----PIVKSFNRNECEVMLVESGGGLVKPGGSL  236 (438)
T ss_dssp             EEEEEECCCTTTCCE-EEEEEEEEEHHHHHTCCEEEEEE-EETTCSS----CEEEEEETTC-CCEEEEECCEEECTTCCE
T ss_pred             ceeccccccCCCCcE-EEEEEEEEeCcccCCCCeEEEEE-EecccCC----ceecccccccceeEEecCCceEEecCCcE
Confidence            00        01111 22457999999999999999999 6663321    23333332   233444556778899999


Q ss_pred             EEEEEEecCC--CCcEEEEEC--Ceeeec----------------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        224 RLECLVVGSP--PPTVEWRIG--NDTYFR----------------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       224 ~l~C~~~g~p--~~~~~W~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      .|.|.+.|.|  .+.+.|+++  +..+..                ...++.+..  ........|.|.+++.+|+|.|+|
T Consensus       237 ~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C  314 (438)
T 1qgc_4          237 KLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISR--DNAKNTLYLQMSSLRSADTAMYYC  314 (438)
T ss_dssp             EEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEE--ETTTTEEEEEECSCCGGGCCEEEE
T ss_pred             EEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEe--ecCCCeEEEEECCCChhhCEEEEE
Confidence            9999999988  678999996  443320                123444431  111135689999999999999999


Q ss_pred             EEeeccc
Q psy15235        284 HGNNVAT  290 (323)
Q Consensus       284 ~a~n~~g  290 (323)
                      .|.|..|
T Consensus       315 ~a~n~~~  321 (438)
T 1qgc_4          315 VRREDGG  321 (438)
T ss_dssp             EECCSSS
T ss_pred             EEEccCC
Confidence            9999554

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.96  E-value=1.5e-26  Score=207.78  Aligned_cols=275  Identities=15%  Similarity=0.202  Sum_probs=182.4

Q ss_pred             eeceEEecCCcEEEEEEec---cCceEEEEEcCccceeec----------cCcceEEEe-eeeCCeEEEEEeeccc--Cc
Q psy15235         28 FGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSS----------VDSGFAATA-NLTEDNFKYSIHEAIL--ES   91 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~----------~~~~~~~~~-~~~~~~~~l~i~~~~~--~G   91 (323)
                      +....+.+|+.++|.|.+.   +.+.+.|+|++.......          ...+..+.. ....+.+.|.|.+++.  +|
T Consensus       119 ~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G  198 (585)
T 2ocw_A          119 TKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAG  198 (585)
T ss_pred             CccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCe
Confidence            4567789999999999954   346799999876532210          011111111 1123445677777654  99


Q ss_pred             ceEEEeeccCCccceeeeeee---CCceeEEecCCcEEEEEEeecCCCCCCceEEEE-ECCee---cccc-----ccccC
Q psy15235         92 GYVQSSLFIPRMNAITGNYDI---EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWY-KGNKS---ITEA-----TELSG  159 (323)
Q Consensus        92 ~Y~C~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~-~~~~~---~~~~-----~~~~~  159 (323)
                      .|+|.+.+..+.......+.+   .|....+.+|+.++|.|.+.+.+|. .+.+.|+ ++|..   +...     .....
T Consensus       199 ~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~~~~~~~-~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~  277 (585)
T 2ocw_A          199 QYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVAN-VAKFLCRQSSGENCDVVVNTLGKRAPAFEG  277 (585)
T ss_pred             EEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEcCCCCCC-ceEEEEEeCCCCCcceEEeCCCcCCcccCC
Confidence            999999987766544444444   4555567889999999997443321 2789997 77732   1110     01133


Q ss_pred             cEE------eceeEEEEeeeecCCCeeEEEEEEcCCCCCCC--CceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEe
Q psy15235        160 RLT------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT--PLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVV  230 (323)
Q Consensus       160 ~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~  230 (323)
                      ++.      .....|.|.+++.+|+|.|+|.+ .|......  ....+.|.|..+|.+. .+....+.+|+.+.|.|.+.
T Consensus       278 ~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a-~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~  356 (585)
T 2ocw_A          278 RILLNPQDKDGSFSVVITGLRKEDAGRYLCGA-HSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYN  356 (585)
T ss_pred             ceEeeccCCCcEEEEEEccCChhhCEEEEEEE-EcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecC
Confidence            332      12237999999999999999999 66522211  1267778888877665 44466788999999999999


Q ss_pred             cCCCCcE----EEEE--CCe--eeecc--------CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235        231 GSPPPTV----EWRI--GND--TYFRS--------QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ  294 (323)
Q Consensus       231 g~p~~~~----~W~~--~~~--~~~~~--------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~  294 (323)
                      +.|.+.+    .|++  ++.  .+...        ..++.+.....+  ...+|+|.+++.+|+|.|+|.| |..|.   
T Consensus       357 ~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~--g~~~L~I~~v~~~D~G~Y~C~a-n~~g~---  430 (585)
T 2ocw_A          357 RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGN--GTFTVILNQLTSRDAGFYWCLT-NGDTL---  430 (585)
T ss_pred             CCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCC--cEEEEEECCCChhhCEEEEEcc-cCCCc---
Confidence            9998876    7999  886  44322        233433311111  2346999999999999999999 87755   


Q ss_pred             CceeEEEEEEcceecCc
Q psy15235        295 PNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       295 ~~~~~~~l~v~~~~~~~  311 (323)
                       ....+.|.|...++.+
T Consensus       431 -~~~~~~l~V~~~~p~~  446 (585)
T 2ocw_A          431 -WRTTVEIKIIEGEPNL  446 (585)
T ss_pred             -cceeEEEEEecCcccc
Confidence             6777888887654443

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.96  E-value=4.6e-27  Score=208.29  Aligned_cols=252  Identities=14%  Similarity=0.195  Sum_probs=161.4

Q ss_pred             eceEEecCCcEEEEEEecc--C--ceEEEEEcCccceeeccCcceEEEeeeeCCe----EEEEEeecc--cCcceEEEee
Q psy15235         29 GDTEIMEGAPINISCILTI--F--EQVKWQLNGRNINQSSVDSGFAATANLTEDN----FKYSIHEAI--LESGYVQSSL   98 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~~--~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~--~~G~Y~C~~~   98 (323)
                      ....+.+|+.++|.|.+.+  .  +.++|+|+|..+.......   ......++.    ..|.|.++.  |+|.|+|.+.
T Consensus       122 ~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  198 (523)
T 2rcj_C          122 PSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT---KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT  198 (523)
T ss_pred             CcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec---cccccCCCCEEEEEEEEEechhcCCCceEEEEEE
Confidence            3345678999999999543  2  3899999998876531100   000011221    246666654  5999999999


Q ss_pred             ccCCccceeee------------eeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeecccccc-----ccCc
Q psy15235         99 FIPRMNAITGN------------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATE-----LSGR  160 (323)
Q Consensus        99 ~~~~~~~~~~~------------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~-----~~~~  160 (323)
                      +..+.......            +...+....+.+|+.+.|.|.+.+..|  .+ .|.|++++..+.....     .++.
T Consensus       199 n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P--~p~~v~W~k~g~~~~~~~~~~~~~~~g~  276 (523)
T 2rcj_C          199 HEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP--QPVTVSWNSGALTSGVHTFPAVLQSSGL  276 (523)
T ss_pred             ecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeC--CCeEEEEecCCcccceEeCCcEecCCCc
Confidence            87655322211            111111122467999999999988733  45 8999999977542100     0111


Q ss_pred             EEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eec-ee-EEeeCCeEEEEEEEecCCC---
Q psy15235        161 LTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVE-TL-TVIEGEKLRLECLVVGSPP---  234 (323)
Q Consensus       161 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~-~~-~~~~g~~~~l~C~~~g~p~---  234 (323)
                      + .....|.|.++..+| |.|+|.| .|..+.  ......+.+...|.+. .++ .. .+.+|+.+.|.|.+.|.|+   
T Consensus       277 ~-~~~s~L~i~~~~~~d-G~Y~C~a-~n~~g~--~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~  351 (523)
T 2rcj_C          277 Y-SLSSVVTVPSSSLGT-QTYICNV-NHKPSN--TKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDP  351 (523)
T ss_pred             E-EEEEEEEechhhcCC-ceEEEEE-EeCCCC--cceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCC
Confidence            1 224589999999999 9999999 777443  3344455554455443 222 22 2678999999999998753   


Q ss_pred             -CcEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        235 -PTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       235 -~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                       +.+.|+++|..+........... ..+. ...+.|.|.++..+|+|.|+|.|.|..|.
T Consensus       352 ~~~v~W~k~g~~l~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  409 (523)
T 2rcj_C          352 QVKFNWYVDGVQVHNAKTKPREQQ-YNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALP  409 (523)
T ss_pred             ceEEEEEECCeEccCCccCCceec-CCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCC
Confidence             48999999998764432111110 1111 13467999999999999999999998765

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=3.9e-26  Score=198.60  Aligned_cols=254  Identities=12%  Similarity=0.116  Sum_probs=159.8

Q ss_pred             EeeceEEecCCcEEEEEEec--cCc---eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeec
Q psy15235         27 YFGDTEIMEGAPINISCILT--IFE---QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLF   99 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~--~~~---~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~   99 (323)
                      .+.+..+.+|++++|.|.+.  +.+   .++|+|+|..+.......        ......|.|..+  .|+|.|+|.+.+
T Consensus        92 ~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~--------~~~~~~L~i~~~~~~d~G~Y~C~a~n  163 (450)
T 1z7z_I           92 APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG--------EPAEVTTTVLVRRDHHGANFSCRTEL  163 (450)
T ss_dssp             CCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT--------TTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             cCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc--------cccceEEEEEeeccccCceEEEEEEc
Confidence            34557789999999999954  445   899999998887642110        122234555544  449999999998


Q ss_pred             cCCccc--------eeeeeee------CCce---eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235        100 IPRMNA--------ITGNYDI------EPKY---KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT  162 (323)
Q Consensus       100 ~~~~~~--------~~~~~~~------~~~~---~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~  162 (323)
                      ..+...        ....+.+      .|..   ..+.+|+.++|.|.+.+.+|...+.+.|++++..+..    .....
T Consensus       164 ~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~----~~~~~  239 (450)
T 1z7z_I          164 DLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYG  239 (450)
T ss_dssp             ECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC----EEEEE
T ss_pred             ccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc----eEEec
Confidence            754321        1111111      2333   5578899999999999984321369999999988764    11111


Q ss_pred             eceeEEE-EeeeecCCCe--eEEEEEEcCCCCCCCCceeeeeEEEe--cceeeeeceeEEeeCCeEEEEEEEecCCCCcE
Q psy15235        163 QSKDSIT-IRKTTVDDAG--QYSCRLIDPKSTNTTPLAQADFDVIM--KPTAKLVETLTVIEGEKLRLECLVVGSPPPTV  237 (323)
Q Consensus       163 ~~~~~l~-i~~~~~~d~G--~y~C~~~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~  237 (323)
                      .....+. ..++..+|+|  .|+|.+ .|..  ........|.|..  +|.+... ...+.+|+.++|.|.+.  |.+.+
T Consensus       240 ~~~~~~~~~~~v~~~d~G~~~Y~C~a-~n~~--g~~~~~~~l~V~~~~~p~i~~~-~~~v~~G~~v~l~C~~~--p~p~i  313 (450)
T 1z7z_I          240 NDSFSAKASVSVTAEDEGTQRLTCAV-ILGN--QSQETLQTVTIYSFPAPNVILT-KPEVSEGTEVTVKCEAH--PRAKV  313 (450)
T ss_dssp             TTEEEEEEEEECCGGGCEEEEEEEEE-EETT--EEEEEEEEEEEECCCCCEEEES-CSEEETTCEEEEEEEC--------
T ss_pred             CCceeEEEEEEeEhhhCCcEEEEEEE-ccCC--ccEEEEEEEEEecCCCCeEecC-CeeEeCCCcEEEEEecC--CCCEe
Confidence            1111111 2267899999  999999 6663  3344566677766  5555533 45788999999999997  88899


Q ss_pred             EEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235        238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDR  313 (323)
Q Consensus       238 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~  313 (323)
                      .|  +|..+...+             ....|.|.++..+|+|.|+|.|.|..|.........+.|.|..+|.....
T Consensus       314 ~W--~g~~~~~~~-------------~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~  374 (450)
T 1z7z_I          314 TL--NGVPAQPLG-------------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDER  374 (450)
T ss_dssp             ------------C-------------CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCST
T ss_pred             EE--CCEEcCCCC-------------ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeec
Confidence            99  676652111             24579999999999999999999876421112457788888877765543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.95  E-value=2.9e-27  Score=196.76  Aligned_cols=244  Identities=14%  Similarity=0.220  Sum_probs=149.5

Q ss_pred             CcEEEEEEec---c-CceEEEEEcCccceeeccCcceEEEeeeeCCeE----EEEEeecc--cCcceEEEeeccCCccce
Q psy15235         37 APINISCILT---I-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNF----KYSIHEAI--LESGYVQSSLFIPRMNAI  106 (323)
Q Consensus        37 ~~v~L~C~~~---~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~--~~G~Y~C~~~~~~~~~~~  106 (323)
                      +++.|.|.+.   | .+.|+|+|+|..+......  ....  ..++.+    .|.+....  |+|.|+|.+.+..+....
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~--~~~~--~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  100 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLST--ASTT--QEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED  100 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEE--EEEE--EETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceec--CCcC--ccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcce
Confidence            6999999953   2 3689999999887643100  0001  112222    34455443  589999999986544322


Q ss_pred             e-----------eeeee-CCceeEEecCCcEEEEEEeecCCCCCCc---eEEEEECC-eeccccc-----cccCcEEece
Q psy15235        107 T-----------GNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDY---QIVWYKGN-KSITEAT-----ELSGRLTQSK  165 (323)
Q Consensus       107 ~-----------~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~---~i~W~~~~-~~~~~~~-----~~~~~~~~~~  165 (323)
                      .           +.+.+ .|....+..|++++|.|.+.+.+|  .+   .|.|++++ ..+....     ..+.++ ...
T Consensus       101 ~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P--~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~-~~~  177 (323)
T 2wqr_A          101 STKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAP--SKGTVQLTWSRASGKPVNHSTRKEEKQRNGTL-TVT  177 (323)
T ss_dssp             EECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECC--CSSCCEEEEEETTCCCCCCCCCEEEECTTSCE-EEE
T ss_pred             eeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCC--CCCceEEEEEECCCcccccccCCCccCCCCCE-EEE
Confidence            1           11111 222223557999999999988654  34   99999975 4332200     111222 234


Q ss_pred             eEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE----Eecceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEE
Q psy15235        166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV----IMKPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVE  238 (323)
Q Consensus       166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v----~~~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~  238 (323)
                      ..|.|.++..+|+|.|+|.+ .|....  ......+.+    ..+|.+.+ +.......|+.++|.|.+.|. |++ .+.
T Consensus       178 ~~L~I~~~~~~D~G~Y~C~a-~n~~~~--~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~  254 (323)
T 2wqr_A          178 STLPVGTRDWIEGETYQCRV-THPHLP--RALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQ  254 (323)
T ss_dssp             EEEECCHHHHHTTCCEEEEE-ECTTSS--SCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECHHHccCCCCEEEEE-ECCCCC--CCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEE
Confidence            57999999999999999999 666321  222223221    24555542 222122239999999999884 544 799


Q ss_pred             EEECCeeeeccCCeeee-ecCCCC-CCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        239 WRIGNDTYFRSQGRIKL-SEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       239 W~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      |+++|..+......... ....++ ....+.|.|..+..+|+|.|+|.|.|..+
T Consensus       255 W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  308 (323)
T 2wqr_A          255 WLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA  308 (323)
T ss_dssp             EEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTS
T ss_pred             EEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCC
Confidence            99999987543111100 000111 12346899999999999999999999884

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.95  E-value=6.8e-30  Score=236.61  Aligned_cols=265  Identities=17%  Similarity=0.272  Sum_probs=0.0

Q ss_pred             EEecCCcEEEEEEe--ccCce-EEEEEcCccceeec------------------------------cCcceEEEeeeeCC
Q psy15235         32 EIMEGAPINISCIL--TIFEQ-VKWQLNGRNINQSS------------------------------VDSGFAATANLTED   78 (323)
Q Consensus        32 ~v~~G~~v~L~C~~--~~~~~-v~W~~~g~~~~~~~------------------------------~~~~~~~~~~~~~~   78 (323)
                      .+.+|+.++|.|.+  .|.+. ++|++++.......                              ..............
T Consensus       434 ~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~  513 (772)
T 3v2a_R          434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT  513 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceE
Confidence            37899999999994  45565 99999743211000                              00000011111123


Q ss_pred             eEEEEEeecccCcceEEEeeccCCccceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCee
Q psy15235         79 NFKYSIHEAILESGYVQSSLFIPRMNAITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS  150 (323)
Q Consensus        79 ~~~l~i~~~~~~G~Y~C~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~  150 (323)
                      ...|.+.++.++|.|+|.+.|..+.......+.+        .+. ..+.+|+.+.|.|.+.+.+   .+.+.|++++..
T Consensus       514 ~~~L~i~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p---~~~v~W~k~~~~  589 (772)
T 3v2a_R          514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTADRST---FENLTWYKLGPQ  589 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEeecccCeEEEEEEEccccccceeEEEEEECCceeeccCC-cccccCCceEEEEeccCCC---CCCcEEEEcCCc
Confidence            3577777787899999999987665432222222        222 2356799999999999887   689999998876


Q ss_pred             ccccccccC-----------------cE-E--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE--Eecce
Q psy15235        151 ITEATELSG-----------------RL-T--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV--IMKPT  208 (323)
Q Consensus       151 ~~~~~~~~~-----------------~~-~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v--~~~p~  208 (323)
                      +........                 .+ .  .....|.|.++..+|+|.|+|.| .|..+.........+.|  ..+|.
T Consensus       590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~~~~~~s~~~~l~v~~~~~P~  668 (772)
T 3v2a_R          590 PLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA-QDRKTKKRHCVVRQLTVLERVAPT  668 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEE-EeCCCCeEEEEEEeecccccCCCE
Confidence            543100000                 00 0  12345999999999999999999 77533333223334444  55676


Q ss_pred             ee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        209 AK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       209 ~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      +. .+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.... ++.+..      ..++|+|.++..+|+|.|+|.|.|
T Consensus       669 ~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~-~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N  741 (772)
T 3v2a_R          669 ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS-GIVLKD------GNRNLTIRRVRKEDEGLYTCQACS  741 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCC-CeEEcC------CCcEEEECcCCHHHCEEEEEEEEe
Confidence            65 3445668899999999999999999999999998886443 332221      357899999999999999999999


Q ss_pred             cccCCCCCceeEEEEEEcceecCcC
Q psy15235        288 VATRNSQPNEAFVYVRVKGKSFGYD  312 (323)
Q Consensus       288 ~~g~~~~~~~~~~~l~v~~~~~~~~  312 (323)
                      ..|.    ....+.|.|.++|...-
T Consensus       742 ~~G~----~~~~~~l~V~~~p~~~~  762 (772)
T 3v2a_R          742 VLGC----AKVEAFFIIEGAQEKTN  762 (772)
T ss_dssp             -------------------------
T ss_pred             CCcc----eeEEEEEEEECCCCccc
Confidence            9966    77889999998877653

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=4.6e-26  Score=198.16  Aligned_cols=246  Identities=12%  Similarity=0.131  Sum_probs=165.0

Q ss_pred             EeeceEEecCCcEEEEEEec-cCceE-----EEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeec
Q psy15235         27 YFGDTEIMEGAPINISCILT-IFEQV-----KWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLF   99 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~-~~~~v-----~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~   99 (323)
                      .|....+.+|++++|.|.+. +.+.+     .|+|++..+...              ....|.|.++++ +| |+|.+.+
T Consensus         5 ~P~~~~v~~G~~v~L~C~~~gp~p~~~~~~~~w~k~~~~~~~~--------------~~~~l~i~~v~~d~g-Y~C~a~~   69 (450)
T 1z7z_I            5 SPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGN--------------NRKVYELSNVQEDSQ-PMCYSNC   69 (450)
T ss_dssp             ESSEEEEETTEEEEEEEECCSSCCCEEEECSSSCEEECCSSTT--------------TEEEEEEEEECSCBC-CEEEEEE
T ss_pred             CCCceEEecCCcEEEEEEccCCCcccccccceeeecceEecCC--------------CceEEEEEecccCCe-eEEEEeC
Confidence            45678899999999999954 56777     899987644321              112455555544 77 9999975


Q ss_pred             cCCccceeeeee---------eCCceeEEecCCcEEEEEEeecCCCCCCc---eEEEEECCeeccccccccCcEE-ecee
Q psy15235        100 IPRMNAITGNYD---------IEPKYKVFEYRVPFTLKCNVTSPPPGDDY---QIVWYKGNKSITEATELSGRLT-QSKD  166 (323)
Q Consensus       100 ~~~~~~~~~~~~---------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~---~i~W~~~~~~~~~~~~~~~~~~-~~~~  166 (323)
                      ..+.......+.         ..+....+.+|+.++|.|.+.+.+   .+   .|.|+|++..+..    ..... ....
T Consensus        70 ~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~---~~~~~~v~W~k~g~~l~~----~~~~~~~~~~  142 (450)
T 1z7z_I           70 PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGA---PRANLTVVLLRGEKELKR----EPAVGEPAEV  142 (450)
T ss_dssp             TTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCB---CGGGEEEEEEETTEEEEE----EECCTTTEEE
T ss_pred             CCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCC---CCcCcEEEEeeCCEEeec----ccccccccce
Confidence            443322111111         133334577899999999999987   45   8999999998865    21111 3356


Q ss_pred             EEEEeeeecCCCeeEEEEEEcCCCCCCC------CceeeeeEEEec----ceeeeeceeEEeeCCeEEEEEEEecC-C--
Q psy15235        167 SITIRKTTVDDAGQYSCRLIDPKSTNTT------PLAQADFDVIMK----PTAKLVETLTVIEGEKLRLECLVVGS-P--  233 (323)
Q Consensus       167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~------~~~~~~l~v~~~----p~~~~~~~~~~~~g~~~~l~C~~~g~-p--  233 (323)
                      .|.|.++..+|+|.|+|.+ .|..+...      ......+.|...    |.+..  ...+.+|+.+.|.|.+.|. |  
T Consensus       143 ~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~--~~~v~~G~~v~l~C~~~g~~P~~  219 (450)
T 1z7z_I          143 TTTVLVRRDHHGANFSCRT-ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS--PRVLEVDTQGTVVCSLDGLFPVS  219 (450)
T ss_dssp             EEEEECCSSCSSCEEEEEE-EEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC--CSEEETTSEEEEEEEEESCTTGG
T ss_pred             EEEEEeeccccCceEEEEE-EcccCCCCceEEeeccCccceeeeccCCCCCEecC--ceeEEeCCcEEEEEEeeCCCCCC
Confidence            8999999999999999999 66533211      113334444432    22222  2568899999999999998 7  


Q ss_pred             CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe--EEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        234 PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG--NYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       234 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G--~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      .+.+.|++++..+..   +....  .  ......+.+ ++..+|.|  .|+|.|.|..|.    ....+.|.|...+.
T Consensus       220 ~~~~~W~~~~~~~~~---~~~~~--~--~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~----~~~~~~l~V~~~~~  285 (450)
T 1z7z_I          220 EAQVHLALGDQRLNP---TVTYG--N--DSFSAKASV-SVTAEDEGTQRLTCAVILGNQS----QETLQTVTIYSFPA  285 (450)
T ss_dssp             GCEEEEEETTEECCC---EEEEE--T--TEEEEEEEE-ECCGGGCEEEEEEEEEEETTEE----EEEEEEEEEECCCC
T ss_pred             ceEEEEeCCCEeCCc---eEEec--C--CceeEEEEE-EeEhhhCCcEEEEEEEccCCcc----EEEEEEEEEecCCC
Confidence            679999999988753   22222  0  001112222 78999999  999999999865    66677777776443

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.95  E-value=1.7e-26  Score=200.50  Aligned_cols=261  Identities=15%  Similarity=0.181  Sum_probs=161.2

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e-----------ccCcceEEEeeeeCCeEEEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S-----------SVDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~-----------~~~~~~~~~~~~~~~~~~l~   83 (323)
                      .+..+.++.+.+|++|+|.|.+.+    .+.+.|+|+.  ..+..   .           ....+..+..+...+...|.
T Consensus         3 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (444)
T 1igt_B            3 KLQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQ   82 (444)
T ss_dssp             EEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEE
Confidence            456677889999999999999542    4689999953  32211   0           01122222222234567788


Q ss_pred             Eeecc--cCcceEEEeeccCCcc---ceeeeeee------CCceeE------EecCCcEEEEEEeecCCCCCCc-eEEEE
Q psy15235         84 IHEAI--LESGYVQSSLFIPRMN---AITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-QIVWY  145 (323)
Q Consensus        84 i~~~~--~~G~Y~C~~~~~~~~~---~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~i~W~  145 (323)
                      |.+++  |+|.|+|.+.+..+..   .....+.+      .|....      +.+|+.++|.|.+.+..|  .+ .|.|+
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~v~W~  160 (444)
T 1igt_B           83 MSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP--EPVTLTWN  160 (444)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBS--SCCEEEEG
T ss_pred             ECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeC--CCcEEEEe
Confidence            88776  4999999998764321   00011111      122221      257999999999988643  44 99999


Q ss_pred             ECCeeccccc----cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE------------------
Q psy15235        146 KGNKSITEAT----ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV------------------  203 (323)
Q Consensus       146 ~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v------------------  203 (323)
                      +++..+....    ...+.+ .....|.|.++..+| |.|+|.+ .|..+..  .....+.+                  
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-g~Y~C~a-~n~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~  235 (444)
T 1igt_B          161 SGSLSSGVHTFPAVLQSDLY-TLSSSVTVTSSTWPS-QSITCNV-AHPASST--KVDKKIEPRGPTIKPCPPCKCPAPNL  235 (444)
T ss_dssp             GGTBCTTEEECCCEEETTEE-EEEEEEEECSTTTTT-SCCEEEE-EETTTTE--EEEEECCCCCCSCCCCCCCSCCCSCC
T ss_pred             cCCCCCCeEecCccccCCcE-EEEEEEEEchhhcCC-CeEEEEE-EeCCCCc--ceEEEeccCCCCcccCCccccCCccc
Confidence            9987642100    001122 223568898888888 9999999 6664332  12222211                  


Q ss_pred             Eeccee-eeeceeE--EeeCCeEEEEEEEecCC----CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235        204 IMKPTA-KLVETLT--VIEGEKLRLECLVVGSP----PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA  276 (323)
Q Consensus       204 ~~~p~~-~~~~~~~--~~~g~~~~l~C~~~g~p----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  276 (323)
                      ..+|.+ ..++...  +.+|+.++|.|.+.|.|    .+.+.|++++..+...................+.|.|.+++.+
T Consensus       236 ~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  315 (444)
T 1igt_B          236 LGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWM  315 (444)
T ss_dssp             CCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHH
T ss_pred             CCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhc
Confidence            113443 2232222  47899999999998874    3589999999876532211111100000113568999999999


Q ss_pred             CCeEEEEEEeecccC
Q psy15235        277 DRGNYYCHGNNVATR  291 (323)
Q Consensus       277 d~G~y~C~a~n~~g~  291 (323)
                      |.|.|+|.|.|..|.
T Consensus       316 d~G~Y~C~a~n~~~~  330 (444)
T 1igt_B          316 SGKEFKCKVNNKDLP  330 (444)
T ss_dssp             TTCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEcCCCC
Confidence            999999999999865

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.95  E-value=9e-26  Score=176.24  Aligned_cols=184  Identities=21%  Similarity=0.340  Sum_probs=141.3

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeec-CCCee
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTV-DDAGQ  180 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~-~d~G~  180 (323)
                      .|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+..   ...++.     .....|.|.++.. +|+|.
T Consensus         6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p---~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~   79 (212)
T 2yd1_A            6 PPEIIRKPQNQGVRVGGVASFYCAARGDP---PPSIVWRKNGKKVSG---TQSRYTVLEQPGGISILRIEPVRAGRDDAP   79 (212)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEEETTEECCT---TSTTEEEEEETTTEEEEEESSCCTTTTCSE
T ss_pred             CCEEEcCCCceEEecCCEEEEEEEEccCC---CCeEEEEECCEECCC---CcceeEEEEcCCCeEEEEEEecCCCCcCce
Confidence            45556667777788999999999999887   679999999988862   134443     2336899999999 99999


Q ss_pred             EEEEEEcCCCCCCCCceeeeeEEEec-------ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCe
Q psy15235        181 YSCRLIDPKSTNTTPLAQADFDVIMK-------PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR  252 (323)
Q Consensus       181 y~C~~~~~~~~~~~~~~~~~l~v~~~-------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~  252 (323)
                      |+|.+ .+..+. .....+.|.|...       |.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....+
T Consensus        80 Y~C~~-~n~~g~-~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~  157 (212)
T 2yd1_A           80 YECVA-ENGVGD-AVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR  157 (212)
T ss_dssp             EEEEE-ECSSSC-EEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTT
T ss_pred             EEEEE-EeCCCC-eEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCe
Confidence            99999 666322 1456677777764       5454 333566788999999999999999999999999988765555


Q ss_pred             eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee-EEEEEEcceecC
Q psy15235        253 IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA-FVYVRVKGKSFG  310 (323)
Q Consensus       253 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~-~~~l~v~~~~~~  310 (323)
                      +...        ...|.|.++..+|+|.|+|.|.|..|.    ... .+.|.|.+....
T Consensus       158 ~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~G~----~~s~~~~l~V~~~~~~  204 (212)
T 2yd1_A          158 YSLK--------DGFLQIENSREEDQGKYECVAENSMGT----EHSKATNLYVKVRRVG  204 (212)
T ss_dssp             EEEE--------TTEEEECSCCGGGCEEEEEEEEETTEE----EECCCEEEEEEC---C
T ss_pred             EEcc--------CCeEEEccCChhhCEEEEEEeecCCCc----eeEEEEEEEEEecccc
Confidence            5544        468999999999999999999999976    443 477878776543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.94  E-value=1.9e-26  Score=193.49  Aligned_cols=262  Identities=16%  Similarity=0.198  Sum_probs=156.0

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee--------------ccCcceEEEeeeeCCeEEEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS--------------SVDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~--------------~~~~~~~~~~~~~~~~~~l~   83 (323)
                      .+..+.++.+.+|++++|.|.+.+    .+.+.|+|+  |..+...              ....+..+..+...+...|.
T Consensus         3 ~l~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (344)
T 1za6_B            3 QLVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVE   82 (344)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             eeeCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEE
Confidence            456677788999999999999542    478999996  4433210              01122222222224567788


Q ss_pred             Eeecc--cCcceEEEeeccCCccceeeeeee------CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCe
Q psy15235         84 IHEAI--LESGYVQSSLFIPRMNAITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK  149 (323)
Q Consensus        84 i~~~~--~~G~Y~C~~~~~~~~~~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~  149 (323)
                      |.+++  |+|.|+|.+.+..........+.+      .|.+..      +..|+.++|.|.+.+.+|. .+.|.|++++.
T Consensus        83 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W~k~g~  161 (344)
T 1za6_B           83 LSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PVTVSWNSGAL  161 (344)
T ss_dssp             ECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSS-CCCEEETTTTB
T ss_pred             ECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECC-CeEEEEecCCc
Confidence            88776  499999999874322111111111      112211      3479999999999987431 26999999987


Q ss_pred             ecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE----------------------
Q psy15235        150 SITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD----------------------  202 (323)
Q Consensus       150 ~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~----------------------  202 (323)
                      .+...     ...++++ .....|.|.++..+| |.|+|.+ .|..+.......+.+.                      
T Consensus       162 ~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-G~Y~C~a-~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~  238 (344)
T 1za6_B          162 TSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGG  238 (344)
T ss_dssp             CTTEEECCCEECTTSCE-EEEEEEEEETTHHHH-BCEEEEE-EEGGGTEEEEEEECCCCC--------------------
T ss_pred             cCceeECCCeECCCCCE-EEEEEEEEcHHHcCC-CcEEEEE-EeCCCCccceEeecccccccccccCCCCCCccccccCC
Confidence            64210     0012222 223478898888878 9999999 6653221111111111                      


Q ss_pred             EEecceeeeec-eeEEeeCCeEEEEEEEecC-C-CCcEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCC
Q psy15235        203 VIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADR  278 (323)
Q Consensus       203 v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~  278 (323)
                      +..+|.+.+.. ......|..+.|.|.+.|. | .+.+.|++||..+.... ........++. ...+.|.|.....+|.
T Consensus       239 ~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~-~~~~~~~~~g~~~~~s~l~i~~~~~~~~  317 (344)
T 1za6_B          239 QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK-TTPPVLDSDGSFFLYSKLTVDKSRWQQG  317 (344)
T ss_dssp             CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEE-ECCCEECTTSCEEEEEEEEECHHHHHTT
T ss_pred             CCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcE-ecceEECCCCcEEEEEEEEEChHHccCC
Confidence            12345444221 1112346679999999885 4 35899999998775321 11111001111 1245677887777889


Q ss_pred             eEEEEEEeeccc
Q psy15235        279 GNYYCHGNNVAT  290 (323)
Q Consensus       279 G~y~C~a~n~~g  290 (323)
                      |.|+|.|.|...
T Consensus       318 g~YtC~a~~~~l  329 (344)
T 1za6_B          318 NVFSCSVMHEAL  329 (344)
T ss_dssp             CEEEEEEECTTS
T ss_pred             CeEEEEEEcCCC
Confidence            999999999873

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.94  E-value=3.6e-25  Score=182.57  Aligned_cols=235  Identities=13%  Similarity=0.103  Sum_probs=160.0

Q ss_pred             EEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccC
Q psy15235         26 TYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIP  101 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~  101 (323)
                      ..+.++.+.+|++++|.|.+  .+.+.+.|+++|..+....   ..........+...|.|.+++.  +|.|+|.+.+..
T Consensus         9 ~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~   85 (305)
T 2nzi_A            9 EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG---LKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQG   85 (305)
T ss_dssp             ECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCS---SSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred             ecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCC---CeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCC
Confidence            34577889999999999994  4668999999998776531   1122222345556777777665  999999999876


Q ss_pred             Cccceeeeeee-------------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----ec
Q psy15235        102 RMNAITGNYDI-------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QS  164 (323)
Q Consensus       102 ~~~~~~~~~~~-------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~  164 (323)
                      +.......+.+             .+....+..|+.+.|.|.+.+.+   .+.+.|++++..+..    ..++.    ..
T Consensus        86 g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~~~~~~----~~~~~~~~~~~  158 (305)
T 2nzi_A           86 GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP---DPVITWQKGQDLIDN----NGHYQVIVTRS  158 (305)
T ss_dssp             EEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEES---CCEEEEEESSSBCCS----SSSCEEEECSS
T ss_pred             CCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCC---CCEEEEEECCEECCC----CCcEEEEEcCC
Confidence            65433222222             11234467899999999999988   789999999988765    44443    35


Q ss_pred             eeEEEEee-eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE--------------
Q psy15235        165 KDSITIRK-TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV--------------  229 (323)
Q Consensus       165 ~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~--------------  229 (323)
                      ...|.|.+ +..+|+|.|+|.+ .|..+  .....+.|.|..+|............+..+.|.|..              
T Consensus       159 ~~~l~i~~~~~~~d~G~Y~C~a-~N~~G--~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v  235 (305)
T 2nzi_A          159 FTSLVFPNGVERKDAGFYVVCA-KNRFG--IDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIV  235 (305)
T ss_dssp             EEEEEETTCCCSTTCEEEEEEE-EETTE--EEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEE
T ss_pred             ceEEEEecCCccCccEEEEEEE-EeCCC--ceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEE
Confidence            67899999 9999999999999 77743  345566677765543211111112235556666654              


Q ss_pred             ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        230 VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       230 ~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...+.+...|.+.+..                  ....|+|.++...+.|.|+|.|.|..|.
T Consensus       236 ~~~~~~~~~w~~~~~~------------------~~~~~~i~~l~~~~~y~~~~~A~N~~G~  279 (305)
T 2nzi_A          236 EKCATTAERWLRVGQA------------------RETRYTVINLFGKTSYQFRVIAENKFGL  279 (305)
T ss_dssp             EEEETTSCCEEEEEEE------------------SSSEEEECSCCSSCEEEEEEEEEETTEE
T ss_pred             EEecCCCCccEECccc------------------cCceEEecCCCCCCeEEEEEEEEeCCcc
Confidence            2222333333332211                  1467999999999999999999999987

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.94  E-value=2.6e-26  Score=198.97  Aligned_cols=250  Identities=16%  Similarity=0.240  Sum_probs=160.6

Q ss_pred             ecCCcEEEEEEe---ccCc-eEEEEEcCccceeeccCcceEEEeee-eCC----eEEEEEeecc--cCcceEEEeeccCC
Q psy15235         34 MEGAPINISCIL---TIFE-QVKWQLNGRNINQSSVDSGFAATANL-TED----NFKYSIHEAI--LESGYVQSSLFIPR  102 (323)
Q Consensus        34 ~~G~~v~L~C~~---~~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~-~~~----~~~l~i~~~~--~~G~Y~C~~~~~~~  102 (323)
                      .+|+.+.|.|.+   .|.+ .++|+++|..+.....   ....... .++    ...|.|.++.  |+|.|+|.+.+..+
T Consensus       129 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  205 (438)
T 1qgc_4          129 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL---NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  205 (438)
T ss_dssp             HHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE---EEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             ccCCceEEEEEEccccCCCcEEEEEECCEEcCCCce---eccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEeccc
Confidence            468999999994   3455 8999999987654300   0000000 011    2356666655  49999999998776


Q ss_pred             ccceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccC
Q psy15235        103 MNAITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSG  159 (323)
Q Consensus       103 ~~~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~  159 (323)
                      ...+...+..        .+....+.+|+.++|.|.+.+.+.. .+.+.|+++  +..+..             ......
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~  284 (438)
T 1qgc_4          206 TSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFN-RCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKG  284 (438)
T ss_dssp             SSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGG-GSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTT
T ss_pred             CCceecccccccceeEEecCCceEEecCCcEEEEEEEcccccC-CcEEEEEECCCCCCcEEEEEEeecCCceecCcccCC
Confidence            6433222221        2334457889999999999987621 368999996  443321             011234


Q ss_pred             cEE------eceeEEEEeeeecCCCeeEEEEEEcCCCCC---CCCceeeeeEEEe----cceee-eeceeEEeeCCeEEE
Q psy15235        160 RLT------QSKDSITIRKTTVDDAGQYSCRLIDPKSTN---TTPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRL  225 (323)
Q Consensus       160 ~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~---~~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l  225 (323)
                      ++.      .....|.|.+++.+|+|.|+|.+ .|..+.   ........+.|..    +|.+. .++...+.+|+.++|
T Consensus       285 r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L  363 (438)
T 1qgc_4          285 RFTISRDNAKNTLYLQMSSLRSADTAMYYCVR-REDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTL  363 (438)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCCEEEEEE-CCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEE
T ss_pred             cEEEEeecCCCeEEEEECCCChhhCEEEEEEE-EccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEE
Confidence            544      12458999999999999999999 763221   1122344566652    44443 333444668999999


Q ss_pred             EEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        226 ECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       226 ~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .|.+.|. |.+ .+.|++++..+...... .+.. .......+.|+|.++..+| |.|+|.|.|..|.
T Consensus       364 ~C~~~g~~P~~~~v~W~~~g~~~~~~~~~-~~~~-~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~  428 (438)
T 1qgc_4          364 GCLVKGYFPEPVTVTWNSGSLSSGVHTFP-AVLQ-SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  428 (438)
T ss_dssp             EEEEESCBSSCCEEEEGGGTCCSSEEECC-CEEE-TTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGT
T ss_pred             EEEeccccCCCcEEEEecCCCCCceeecC-cccc-CCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCC
Confidence            9999987 887 89999998775421100 0010 1001124579999999989 9999999999965

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.94  E-value=2.3e-25  Score=171.36  Aligned_cols=184  Identities=21%  Similarity=0.302  Sum_probs=139.2

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+........+..  .....|.|.+++.+|+|.|+|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFP---VPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK   81 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecC---CCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            45555566777788999999999998877   679999999988765221112222  4567899999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEEE---ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235        185 LIDPKSTNTTPLAQADFDVI---MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE  260 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v~---~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  260 (323)
                      + .+..+  .......+.|.   .+|.+. .+....+..|+.+.|.|.+.|+|.+.+.|++++..+... .++.+..  .
T Consensus        82 ~-~n~~~--~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~~--~  155 (194)
T 2a38_A           82 A-TNGSG--QATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS-LDFQISQ--E  155 (194)
T ss_dssp             E-EETTE--EEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEE--E
T ss_pred             E-EcCCc--eEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCC-CcEEEEE--c
Confidence            9 66632  34455566666   355544 334567889999999999999999999999999988643 3343331  1


Q ss_pred             CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      +  ...+|.|.++..+|.|.|+|.|.|..|.    ....+.|.|+
T Consensus       156 ~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~  194 (194)
T 2a38_A          156 G--DLYSLLIAEAYPEDSGTYSVNATNSVGR----ATSTAELLVQ  194 (194)
T ss_dssp             T--TEEEEEEEEECGGGCEEEEEEEEETTEE----EEEEEEEEEC
T ss_pred             C--CEEEEEECCCChhcCeEEEEEEEeCCCc----eEEEEEEEEC
Confidence            1  2458999999999999999999999966    7777777764

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.94  E-value=7.9e-25  Score=167.86  Aligned_cols=178  Identities=24%  Similarity=0.356  Sum_probs=135.6

Q ss_pred             eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +...+...+...|+.++|.|.+.+.++. .+.+.|++++..+..    .... .....|.|.+++.+|+|.|+|.+ .+.
T Consensus         6 i~~~~~~~v~~~G~~v~l~C~~~~~~~~-~~~v~W~~~~~~~~~----~~~~-~~~~~L~i~~~~~~d~G~Y~C~~-~n~   78 (190)
T 2wv3_A            6 IVTSEEVIIRDSLLPVTLQCNLTSSSHT-LMYSYWTKNGVELTA----TRKN-ASNMEYRINKPRAEDSGEYHCVY-HFV   78 (190)
T ss_dssp             EEECCCEECCCSSSCEEEEEEEEECSSC-EEEEEEEETTEECTT----CCBC-CSEEEEEESSCCGGGCEEEEEEE-EET
T ss_pred             ccccceEEEccCCceEEEEEEeccCCCC-ceEEEEEECCEECcc----cceE-eccEEEEEecCCcccCEEEEEEE-EeC
Confidence            3334444444449999999999887721 379999999998865    2222 35678999999999999999999 555


Q ss_pred             CCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEE--CCeeeec--cCCeeeeecCCCCCCc
Q psy15235        190 STNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRI--GNDTYFR--SQGRIKLSEHPEKGTA  264 (323)
Q Consensus       190 ~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~~~~--~~~~~~~~~~~~~~~~  264 (323)
                         ......+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++  ++..+..  ...++.+..  .+  .
T Consensus        79 ---~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~--~~--~  151 (190)
T 2wv3_A           79 ---SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN--KE--N  151 (190)
T ss_dssp             ---TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEE--CS--S
T ss_pred             ---CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEec--CC--C
Confidence               345677888888888776 3445678899999999999999999999999  7766542  334554441  11  2


Q ss_pred             ceeEEEeecC-cCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        265 NSVLQIDEAT-MADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       265 ~~~L~i~~v~-~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      ..+|.|.++. .+|+|.|+|.|.|..|.    ....+.|.|.
T Consensus       152 ~~~L~i~~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~  189 (190)
T 2wv3_A          152 YTELNIVNLQITEDPGEYECNATNSIGS----ASVSTVLRVR  189 (190)
T ss_dssp             EEEEEECSCCTTTSCEEEEEEEECSSCE----EEEEEEEEEE
T ss_pred             eeEEEEEeccccCCCEEEEEEEEecCCc----ceeEEEEEEE
Confidence            4689999999 79999999999999966    7777777764

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.94  E-value=8.1e-25  Score=168.64  Aligned_cols=182  Identities=20%  Similarity=0.325  Sum_probs=141.3

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+..    ..++.    .....|.|.++..+|+|.|+
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   79 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRP---LPDIKWYRFGKELIQ----SRKYKMSSDGRTHTLTVMTEEQEDEGVYT   79 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEES---CCEEEEEETTEEECC----CSSEEEEESSSEEEEEEECCSGGGCEEEE
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCC---CCEEEEEECCEECCC----CccEEEEeCCCEEEEEEecCCccCCEEEE
Confidence            45555566667788999999999998877   679999999998866    44443    33458999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEecceee----eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecC
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIMKPTAK----LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH  258 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~----~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~  258 (323)
                      |.+ .+..  ........+.|..+|.+.    .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++.+.. 
T Consensus        80 C~~-~n~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~-  154 (197)
T 3lcy_A           80 CIA-TNEV--GEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS-ENITIEN-  154 (197)
T ss_dssp             EEE-ECSS--CEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEE-
T ss_pred             EEE-ECCC--CceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCC-CceEEEE-
Confidence            999 6663  334556677777766544    234556788999999999999999999999999888643 3443331 


Q ss_pred             CCCCCcceeEEEeecCc-CCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235        259 PEKGTANSVLQIDEATM-ADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       259 ~~~~~~~~~L~i~~v~~-~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                         ......|.|.++.. +|+|.|+|.|.|..|.    ....+.|.|.++
T Consensus       155 ---~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~k  197 (197)
T 3lcy_A          155 ---TEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT----VDAILDVEIQDK  197 (197)
T ss_dssp             ---CSSEEEEEESSCCHHHHCEEEEEEEECSSCE----EEEEEEEEEECC
T ss_pred             ---cCCEEEEEEccccchhhCceEEEEEEcCcCc----eEEEEEEEEecC
Confidence               01247899999985 8999999999999965    788888888764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.94  E-value=4.1e-25  Score=170.44  Aligned_cols=182  Identities=21%  Similarity=0.328  Sum_probs=140.4

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y  181 (323)
                      .|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+...   ..++.     .....|.|.+++.+|+|.|
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   77 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHP---KPIVKWYRQGKEIIAD---GLKYRIQEFKGGYHQLIIASVTDDDATVY   77 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEEETTEECCCC---SSSEEEEEETTTEEEEEECSCCGGGCSEE
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecC---CCEEEEEECCEECccC---CCcEEEEEcCCCEEEEEECcCCHHhCEEE
Confidence            34555566667788999999999999877   6899999999887641   22332     2334899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEEecceeeee------ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeee
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLV------ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKL  255 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~------~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~  255 (323)
                      +|.+ .+..  ......+.|.|..+|.+..+      ....+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++.+
T Consensus        78 ~C~~-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~  153 (197)
T 2j8h_A           78 QVRA-TNQG--GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQV  153 (197)
T ss_dssp             EEEE-EETT--EEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSS-SSCEE
T ss_pred             EEEE-EECC--CceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecC-CCEEE
Confidence            9999 6663  33466777778776655422      3456788999999999999999999999999888633 34443


Q ss_pred             ecCCCCCCcceeEEEee-cCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        256 SEHPEKGTANSVLQIDE-ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       256 ~~~~~~~~~~~~L~i~~-v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ..  .  .....|.|.+ +..+|+|.|+|.|.|..|.    ....+.|.|.+
T Consensus       154 ~~--~--~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~d  197 (197)
T 2j8h_A          154 IV--T--RSFTSLVFPNGVERKDAGFYVVCAKNRFGI----DQKTVELDVAD  197 (197)
T ss_dssp             EE--C--SSEEEEECTTCCCGGGCEEEEEEEEETTEE----EEEEEEEEEEC
T ss_pred             EE--c--CCceEEEEeCCCCcccCEeEEEEEEeCCCc----EeEEEEEEEeC
Confidence            31  1  1357899999 9999999999999999966    78888888753

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.9e-25  Score=171.04  Aligned_cols=181  Identities=20%  Similarity=0.355  Sum_probs=133.3

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      +.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+..  ....++. .....|.|.+++.+|+|.|+|.+ 
T Consensus         3 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-   76 (189)
T 2v5t_A            3 LTFREVVSPQEFKQGEDAEVVCRVSSSP---APAVSWLYHNEEVTT--ISDNRFAMLANNNLQILNINKSDEGIYRCEG-   76 (189)
T ss_dssp             CEEEECCSSEEEETTSCEEECCEEECSS---CCEEEEEC-----CB--CCCTTEEECTTSCEEETTCCGGGCEEEEEEE-
T ss_pred             ceeeccCCCEEEeCCCcEEEEEEEcCCC---CCEEEEEECCcccee--ccCCeEEEecCCCEEEeeCCHhHCcEEEEEE-
Confidence            3444566667788999999999999877   689999999887653  1234444 44567999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEecceeeeec---eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235        187 DPKSTNTTPLAQADFDVIMKPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT  263 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
                      .+..+.......+.+.+..+|.+....   ...+.+|+.+.|.|.+.|.|.+.+.|++++..+... .++....      
T Consensus        77 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~------  149 (189)
T 2v5t_A           77 RVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKG------  149 (189)
T ss_dssp             EETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCS-SSEEEET------
T ss_pred             EEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCC-CcEEEec------
Confidence            555333333455667777777665322   345678999999999999999999999999987644 3333331      


Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      ....|+|.++..+|+|.|+|.|.|..|.    ....+.|.|.
T Consensus       150 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~  187 (189)
T 2v5t_A          150 SNTELTVRNIINSDGGPYVCRATNKAGE----DEKQAFLQVF  187 (189)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEE
T ss_pred             CCCEEEEcCCChhhCeeEEEEEEeCCCc----eeEEEEEEEE
Confidence            3578999999999999999999999976    6666666654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.94  E-value=7.2e-24  Score=180.79  Aligned_cols=252  Identities=12%  Similarity=0.137  Sum_probs=166.1

Q ss_pred             ceEEEeeceEEecCCcEEEEEEe--ccCceEEEEEc--CccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCIL--TIFEQVKWQLN--GRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQS   96 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~   96 (323)
                      +.+..+.+..+.+|+++.|.|.+  .|.+.++|+|+  |..+..........+......+...|.|.+++  |+|.|+|.
T Consensus         2 P~i~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   81 (389)
T 2jll_A            2 PHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE   81 (389)
T ss_dssp             CEEEECCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEE
T ss_pred             CeEEecCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEE
Confidence            34556777889999999999994  46789999998  76665432111122223333455667777665  49999999


Q ss_pred             eeccCCccceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----ec
Q psy15235         97 SLFIPRMNAITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QS  164 (323)
Q Consensus        97 ~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~  164 (323)
                      +.+..+.......+.+        .+....+..|+.+.|.|.+.+.|   .+.+.|++++..+....  ..++.    ..
T Consensus        82 a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~i~W~~~g~~l~~~~--~~~~~~~~~~~  156 (389)
T 2jll_A           82 AASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNP---PASIHWRRDKLVLPAKN--TTNLKTYSTGR  156 (389)
T ss_dssp             EECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEES---CCEEEEEETTEESSCTT--CTTEEEEECSS
T ss_pred             EEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecC---CCeEEEEECCccCCccc--CceEEEeccCC
Confidence            9987766432222222        33334577899999999999988   78999999999886521  11332    34


Q ss_pred             eeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEe----cCCCC--cEE
Q psy15235        165 KDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV----GSPPP--TVE  238 (323)
Q Consensus       165 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~----g~p~~--~~~  238 (323)
                      ...|.|.++..+|+|.|+|.| .|..+.  ......+.+...|............+..+.|.|...    |.|..  .+.
T Consensus       157 ~~~L~i~~~~~~d~G~Y~C~a-~N~~G~--~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~  233 (389)
T 2jll_A          157 KMILEIAPTSDNDFGRYNCTA-TNHIGT--RFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD  233 (389)
T ss_dssp             CEEEEECCCSTTSSEEEEEEE-EETTEE--EEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEE-EcCCCc--EEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEE
Confidence            568999999999999999999 676433  344455555444321111112233467899999852    22322  477


Q ss_pred             EEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      |.+++....     ....  .  ......+.|.++...+.+.|+|.|.|..|.
T Consensus       234 ~~~~~~~~~-----~~~~--~--~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~  277 (389)
T 2jll_A          234 VKEVASEIW-----KIVR--S--HGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ  277 (389)
T ss_dssp             EEETTCSCC-----EEEE--C--STTCSEEEECSCCTTCEEEEEEEEEESSCB
T ss_pred             EEECCCccc-----EEee--c--cCCcceEEECCccCCCEEEEEEEEEcCCcc
Confidence            877654211     0111  0  013467999999999999999999999987

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.94  E-value=9.8e-25  Score=170.35  Aligned_cols=185  Identities=22%  Similarity=0.299  Sum_probs=135.1

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeee-cCCCe
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTT-VDDAG  179 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~-~~d~G  179 (323)
                      ..|.+...+....+.+|+.+.|.|.+.+.+   .+.+.|++++..+..    .....     .....|.|.++. .+|+|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p---~~~v~W~k~~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~~d~G   77 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDP---RPKIVWNKKGKKVSN----QRFEVIEFDDGSGSVLRIQPLRTPRDEA   77 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----TTEEEEEEGGGTEEEEEECSCCTTTTCE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCC---CCEEEEEECCcCCCC----CceeEEEEcCCCceEEEEeccCCCCCCe
Confidence            356666677777788999999999999877   689999999988865    22111     245679999994 99999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEEec-------ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc--
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVIMK-------PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS--  249 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~-------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~--  249 (323)
                      .|+|.+ .+..  ......+.|.|...       |.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+...  
T Consensus        78 ~Y~C~a-~n~~--g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~  154 (212)
T 2yd6_A           78 IYECVA-SNNV--GEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNN  154 (212)
T ss_dssp             EEEEEE-EETT--EEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC-----
T ss_pred             EEEEEE-EcCC--CcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCC
Confidence            999999 6663  23455667777654       4444 333556788999999999999999999999999987643  


Q ss_pred             CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235        250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      ..++....  .  .....|.|.++..+|+|.|+|.|.|..|..   ....+.|.|...
T Consensus       155 ~~~~~~~~--~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~---~s~~a~l~~~~~  205 (212)
T 2yd6_A          155 NGRIKQLR--S--ESIGALQIEQSEESDQGKYECVATNSAGTR---YSAPANLYVRGT  205 (212)
T ss_dssp             -CCEEEEE--E--TTEEEEEECSCCGGGCEEEEEEEEETTEEE---ECCCEEEEEEC-
T ss_pred             CceEEEEe--c--CCeEEEEEcCCCcccCEEEEEEEECCCCcc---ccccccEEEEec
Confidence            23333321  0  125899999999999999999999999872   233444444443

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.94  E-value=4.1e-25  Score=169.69  Aligned_cols=183  Identities=23%  Similarity=0.344  Sum_probs=139.4

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+..   ...++.  .....|.|.+++.+|+|.|+|.
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p---~~~i~W~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYP---QPEISWTRNKILIKL---FDTRYSIRENGQLLTILSVEDSDDGIYCCT   80 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEES---CCEEEEEETTEECCT---TCTTEEEEGGGTEEEESSCCGGGCEEEEEE
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCC---CCeEEEEECCEEccc---cCccEEEcCCccEEEEcCCCcccCeEEEEE
Confidence            34444566666788999999999999877   679999999988754   133443  3455799999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEEEecceeee-eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235        185 LIDPKSTNTTPLAQADFDVIMKPTAKL-VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT  263 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
                      + .+..+. .......+.|..+|.+.. +....+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++...       
T Consensus        81 ~-~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~-------  150 (192)
T 2iep_A           81 A-NNGVGG-AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN-SRIAVL-------  150 (192)
T ss_dssp             E-ECSSSC-CEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCC-SSEEEC-------
T ss_pred             E-EcCCCc-eeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCC-CcEEEe-------
Confidence            9 665322 234566778887777663 34567889999999999999999999999999887644 344443       


Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      ....|.|.++..+|+|.|+|.|.|..|.   .....+.|.|..+|
T Consensus       151 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~---~~s~~~~l~V~~pp  192 (192)
T 2iep_A          151 ESGSLRIHNVQKEDAGQYRCVAKNSLGT---AYSKLVKLEVEVFA  192 (192)
T ss_dssp             TTSCEEESSCCGGGCEEEEEEEEETTEE---EECCCEEEEEEC--
T ss_pred             cCCcEEEecCChhhCEEEEEEEEcCCCc---EEEEEEEEEEEeCC
Confidence            2568999999999999999999999976   12445777776553

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.93  E-value=6.4e-26  Score=209.99  Aligned_cols=262  Identities=16%  Similarity=0.163  Sum_probs=106.4

Q ss_pred             eeceEEecC--CcEEEEEEec-cCceEEEEEc--CccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCC
Q psy15235         28 FGDTEIMEG--APINISCILT-IFEQVKWQLN--GRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPR  102 (323)
Q Consensus        28 ~~~~~v~~G--~~v~L~C~~~-~~~~v~W~~~--g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~  102 (323)
                      +..+.+.+|  ++++|.|.+. +.+.++|+++  +..+...    +..... .....+.+......|.|.|+|.+.+...
T Consensus       133 ~~~~~v~~G~~~~v~L~C~~~~p~~~v~w~~~~~~~~~~~~----~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~  207 (772)
T 3v2a_R          133 HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD----GNRISW-DSKKGFTIPSYMISYAGMVFCEAKINDE  207 (772)
T ss_dssp             EEEEEEESSCCCEEEECCCCSCSSCCEEEEEETTTEEECCC----SSSCEE-ETTTEEEEEGGGTTTCSEEEEEEEETTE
T ss_pred             ceeEEEecCCCCeEEEEccCCCCCcEEEEEecCCCccccCC----Cceeec-CCCCCeEecCCChhhCeEEEEEEEECCc
Confidence            345678889  9999999943 5689999997  6554432    111111 1233344443444459999999986533


Q ss_pred             ccc-----------eeeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC--------cEE
Q psy15235        103 MNA-----------ITGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG--------RLT  162 (323)
Q Consensus       103 ~~~-----------~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~--------~~~  162 (323)
                      ...           ..+.+.+ .+....+.+|+.++|.|.+.+.+.. ...+.|++++..+........        ...
T Consensus       208 ~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (772)
T 3v2a_R          208 SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV-GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK  286 (772)
T ss_dssp             EEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTC-CCEEEEECC--------CEEEEC-----CCCE
T ss_pred             eEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCC-ceeEEEecCCccCCCceeeeccccccccccce
Confidence            211           0112222 2233467889999999999874311 579999999876543100000        112


Q ss_pred             eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeee----ceeEEeeCCeEEEEEEEecCCCCcEE
Q psy15235        163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLV----ETLTVIEGEKLRLECLVVGSPPPTVE  238 (323)
Q Consensus       163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~g~~~~l~C~~~g~p~~~~~  238 (323)
                      .....|.|.+++.+|+|.|+|.+ .+..  ......+.|.|..+|.+...    ....+.+|+.+.|.|.+.|+|.+.+.
T Consensus       287 ~~~~~L~i~~v~~~d~G~Y~C~~-~~~~--~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~  363 (772)
T 3v2a_R          287 KFLSTLTIDGVTRSDQGLYTCAA-SSGL--MTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIK  363 (772)
T ss_dssp             EEEEEEEESSCCSTTCSEEEEEE-ECSS--CEEEEEEEEEEECCCC----------------------------------
T ss_pred             EEEEEEEECcCCcCCCeEEEEEE-EcCC--cceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEE
Confidence            35568999999999999999999 6663  33566778888888765522    34568899999999999999999999


Q ss_pred             EEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      |+++|..+...   ..+.       ....|.|.++..+|+|.|+|.|.|..|.  ......+.|.|..+|..
T Consensus       364 W~~~g~~l~~~---~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~--~~~s~~~~l~v~~~P~~  423 (772)
T 3v2a_R          364 WYKNGIPLESN---HTIK-------AGHVLTIMEVSERDTGNYTVILTNPISK--EKQSHVVSLVVYVPPQI  423 (772)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             EEECCEeCCCC---ceEc-------cceeEEEecCChhcCceEEEEEEECCcC--eEEEEEEEEEEecCCcc
Confidence            99999877531   1111       2588999999999999999999999875  22355666777666554

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.93  E-value=9.3e-25  Score=169.37  Aligned_cols=167  Identities=12%  Similarity=0.127  Sum_probs=123.3

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----e--ceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----Q--SKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~--~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ..+.+|+.+.|.|.+.+..|  .+.|+|++||.++..    +.++.    .  ....|.|.+++.+|+|.|+|.+ .|. 
T Consensus        12 ~~v~eg~~v~l~c~~~~~~P--~p~i~W~kng~~l~~----~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-~Ng-   83 (207)
T 3rbs_A           12 VEILEKGQVRFWMQAEKLSG--NAKVNYIFNEKEIFE----GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL-QDG-   83 (207)
T ss_dssp             EEECGGGCEEEEEECSCCCS--CCEEEEEETTEEECS----SSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEE-EET-
T ss_pred             eEEEeCCeEEEEEEEecCCC--CCEEEEEECCEECcc----CCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEE-ECC-
Confidence            34678999999999976433  789999999999976    33332    1  3457999999999999999999 552 


Q ss_pred             CCCCCceeeeeEEE---------------------ecceeeeeceeEEeeCCeEEEEEEEecC-CCCcEEEEECCeeeec
Q psy15235        191 TNTTPLAQADFDVI---------------------MKPTAKLVETLTVIEGEKLRLECLVVGS-PPPTVEWRIGNDTYFR  248 (323)
Q Consensus       191 ~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~  248 (323)
                       .  ......+.+.                     .+|.+..+....+.+|+.+.|.|.+.|. |.|.+.|++++..+..
T Consensus        84 -~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~  160 (207)
T 3rbs_A           84 -K--ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV  160 (207)
T ss_dssp             -T--EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECC
T ss_pred             -C--eEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCC
Confidence             1  1122222110                     1354443335678899999999999998 9999999999999865


Q ss_pred             cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        249 SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      +. ++...      ....+|.|.++..+|+|.|+|.|.|..|.    ..+.+.|.++
T Consensus       161 ~~-~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~L~~~  206 (207)
T 3rbs_A          161 DE-KHDFK------DGICTLLITEFSKKDAGIYEVILKDDRGK----DKSRLKLVDE  206 (207)
T ss_dssp             CC-CCCCS------SEEEEEEETTCCGGGCEEEEEEEEETTEE----EEEEEEECCC
T ss_pred             CC-ceEcC------CCEEEEEECCCCcccCEEEEEEEEcCCCE----EEEEEEEecC
Confidence            32 32211      13567999999999999999999999966    7777776543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.93  E-value=4.2e-25  Score=191.75  Aligned_cols=251  Identities=14%  Similarity=0.246  Sum_probs=152.4

Q ss_pred             EecCCcEEEEEEec---cCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeeccCCcccee
Q psy15235         33 IMEGAPINISCILT---IFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLFIPRMNAIT  107 (323)
Q Consensus        33 v~~G~~v~L~C~~~---~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~~~~~~~~~  107 (323)
                      +.+|+.++|.|.+.   |.+ .++|++++..+....... .. ..........|.|.++.. .|.|+|.+.+..+.....
T Consensus       135 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~~-~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~~  212 (444)
T 1igt_B          135 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA-VL-QSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVD  212 (444)
T ss_dssp             CCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EE-ETTEEEEEEEEEECSTTTTTSCCEEEEEETTTTEEEE
T ss_pred             CCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCc-cc-cCCcEEEEEEEEEchhhcCCCeEEEEEEeCCCCcceE
Confidence            47899999999953   455 999999987643211000 00 000001112456666542 399999999887653221


Q ss_pred             ee--------------------------eee-CCceeE-EecCCcEEEEEEeecCC--CCCCceEEEEECCeeccccccc
Q psy15235        108 GN--------------------------YDI-EPKYKV-FEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKSITEATEL  157 (323)
Q Consensus       108 ~~--------------------------~~~-~~~~~~-~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~~~~~~~~  157 (323)
                      ..                          +.+ .+.... +..|+.++|.|.+.+.+  |. .+.|.|++++..+......
T Consensus       213 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~-~~~v~W~k~~~~~~~~~~~  291 (444)
T 1igt_B          213 KKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDP-DVQISWFVNNVEVHTAQTQ  291 (444)
T ss_dssp             EECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCC-CCEEEEEETTEECSSTTCB
T ss_pred             EEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCC-CeEEEEEECCccccCcccc
Confidence            11                          111 121111 36799999999999873  21 4799999999877541111


Q ss_pred             c------CcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEE
Q psy15235        158 S------GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECL  228 (323)
Q Consensus       158 ~------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~  228 (323)
                      .      +.+ .....|.|.++..+|+|.|+|.| .|..+.......+.+  .+..+|.+.+.. ......+..++|.|.
T Consensus       292 ~~~~~~~~~~-~~~~~L~I~~v~~~d~G~Y~C~a-~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~  369 (444)
T 1igt_B          292 THREDYNSTL-RVVSALPIQHQDWMSGKEFKCKV-NNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCM  369 (444)
T ss_dssp             CCEEECSSSE-EEEEEEECCHHHHHTTCEEEEEE-ECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEE
T ss_pred             cceeCCCCcE-EEEEEEEEcHHHhccCCcEEEEE-EcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEE
Confidence            0      111 23457999999999999999999 676443322233222  344566665322 111123445999999


Q ss_pred             Eec-CCCC-cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        229 VVG-SPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       229 ~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      +.| .|++ .+.|+++|..+... .........++. ...+.|.|.....+|.|.|+|.|.|..
T Consensus       370 ~~g~~P~~~~v~W~k~g~~l~~~-~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~  432 (444)
T 1igt_B          370 VTDFMPEDIYVEWTNNGKTELNY-KNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG  432 (444)
T ss_dssp             EEEEBSSCCEEEEEETTEECSSE-EECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             EEeeeCCCCEEEEEECCEEcccc-ccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence            988 4665 89999999887421 111110001111 134567888888888999999999986

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.93  E-value=1e-24  Score=167.29  Aligned_cols=168  Identities=26%  Similarity=0.435  Sum_probs=131.6

Q ss_pred             eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEE
Q psy15235        110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      +.+.|....+.+|+.++|.|.+.+.++  .+.+.|++ ++..+...   ..++.     .....|.|.+++.+|+|.|+|
T Consensus         5 v~~~p~~~~v~~G~~v~l~C~~~~~~~--~~~v~W~~~~g~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (191)
T 1epf_A            5 VDIVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIYNANIDDAGIYKC   79 (191)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSC--CCEEEEECTTSCEECCB---SSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEecCCCcEEcCCCCEEEEEECCCCCC--CceEEEEeCCCccccCC---CCeEEEEECCCCceEEEEccCCcccCEEEEE
Confidence            444566677889999999999988764  57999999 88777631   33333     346789999999999999999


Q ss_pred             EEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCCC
Q psy15235        184 RLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEK  261 (323)
Q Consensus       184 ~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~  261 (323)
                      .+ .+..+ ......+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+... ..++...     
T Consensus        80 ~~-~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~-----  152 (191)
T 1epf_A           80 VV-TAEDG-TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL-----  152 (191)
T ss_dssp             EE-EETTT-EEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC-----
T ss_pred             EE-EcCCC-cceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe-----
Confidence            99 56532 345667777777777665 344567889999999999999999999999999887543 2344444     


Q ss_pred             CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        262 GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       262 ~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                        ....|.|.++..+|+|.|+|.|.|..|.
T Consensus       153 --~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  180 (191)
T 1epf_A          153 --SNNYLQIRGIKKTDEGTYRCEGRILARG  180 (191)
T ss_dssp             --TTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             --cCCeEEECCCChhhCEEEEEEEEEecce
Confidence              3558999999999999999999999854

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.93  E-value=9.5e-25  Score=169.11  Aligned_cols=170  Identities=21%  Similarity=0.293  Sum_probs=131.7

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.+.+.|....+.+|++++|.|.+.+.++  ...+.|+++|..+..          ....|.|.+++.+|+|.|+|.+ .
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~--~~~v~W~k~g~~l~~----------~~~~L~i~~v~~~D~G~Y~C~a-~   74 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPE--DQSTQWFHNESLISS----------QASSYFIDAATVDDSGEYRCQT-Q   74 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSSS--CCCEEEEETTEEESC----------CSSEEEESSCCGGGCEEEEEEE-T
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCCC--CcEEEEEECCEEccc----------CccEEEEecccccCCEEEEEEe-C
Confidence            34455555566889999999999998773  335999999998865          2378999999999999999999 6


Q ss_pred             CCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CCCcEEEEECCeeeeccCCeeeeecCCCCCCcce
Q psy15235        188 PKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANS  266 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (323)
                      +.    ..+..+.|.|..+|.+...+...+.+|+.++|.|.+.+. |.+.+.|++++..+....             ...
T Consensus        75 n~----~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~-------------~~~  137 (204)
T 3sgj_C           75 LS----TLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH-------------HNS  137 (204)
T ss_dssp             TS----BCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------------ECC
T ss_pred             CC----cccccEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc-------------CCc
Confidence            64    456677888888776665556778899999999999665 567899999998764211             257


Q ss_pred             eEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        267 VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       267 ~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      .|.|.+++.+|+|.|+|.|.|..+   +..+..+.|.|.+.+..
T Consensus       138 ~L~i~~v~~~D~G~Y~C~a~n~~~---~~~s~~~~l~V~~~~~~  178 (204)
T 3sgj_C          138 DFYIPKATLKDSGSYFCRGLVGSK---NVSSETVQITITQGLAV  178 (204)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTE---EEECCCEEEEEEC----
T ss_pred             eEEECcCCcccCEEEEEEEEeCCC---ceecCcEEEEEeCcCCC
Confidence            899999999999999999999542   23667778888776543

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.93  E-value=6.9e-24  Score=173.06  Aligned_cols=186  Identities=26%  Similarity=0.397  Sum_probs=146.5

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .|.+...|....+.+|+.++|.|.+.+.+   .+.+.|++++..+..    ..++.    .....|.|.+++.+|+|.|+
T Consensus         5 pP~~~~~p~~~~~~~G~~v~l~C~~~g~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~   77 (284)
T 2rik_A            5 PPFFDLKPVSVDLALGESGTFKCHVTGTA---PIKITWAKDNREIRP----GGNYKMTLVENTATLTVLKVTKGDAGQYT   77 (284)
T ss_dssp             CCEEEECCCCEEEETTCCEEEEEEEESSS---CCEEEEEETTEECCS----SSSEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEccccceEecCCCcEEEEEEEEcCC---CCEEEEEECCEECcC----CCcEEEEEcCCEEEEEEecCCcccCEEEE
Confidence            45556677777788999999999999887   679999999998876    33332    45688999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEecceee--eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIMKPTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE  260 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  260 (323)
                      |.+ .+..  ......+.|.|..+|.+.  ......+.+|+.+.|.|.+.|+|.+.+.|++++..+.... ++...... 
T Consensus        78 C~~-~n~~--g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~-~~~~~~~~-  152 (284)
T 2rik_A           78 CYA-SNVA--GKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS-KFRMSFVE-  152 (284)
T ss_dssp             EEE-EETT--EEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSS-SEEEEEET-
T ss_pred             EEE-EECC--ceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCC-cEEEEEcC-
Confidence            999 6663  335667788888877654  2334568899999999999999999999999998876443 22222101 


Q ss_pred             CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                         ....|.|.+++.+|+|.|+|.|.|..|.    ....+.|.|..+|...
T Consensus       153 ---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~~  196 (284)
T 2rik_A          153 ---SVAVLEMYNLSVEDSGDYTCEAHNAAGS----ASSSTSLKVKEPPVFR  196 (284)
T ss_dssp             ---TEEEEEECSCCGGGCEEEEEEEECSSCE----EEEEEEEEEECCCBCC
T ss_pred             ---CEEEEEECCCCcccCEEEEEEEEcCCCc----eeEEEEEEEecCCcce
Confidence               3578999999999999999999999865    7788888888776544

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.93  E-value=9.9e-25  Score=165.02  Aligned_cols=167  Identities=21%  Similarity=0.323  Sum_probs=130.2

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .|.+.+.|....+.+|+.++|.|.+.+.++  ...+.|++++..+..          ....|.|.+++.+|+|.|+|.+ 
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~--~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~-   73 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPE--DNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQT-   73 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTT--BCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEEC-
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCC--CcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEe-
Confidence            344555666566889999999999988773  235899999988764          4568999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcc
Q psy15235        187 DPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTAN  265 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (323)
                      .+.    .....+.|.|..++.+.......+.+|+.+.|.|.+.+.|++ .+.|++++..+...      .       ..
T Consensus        74 ~n~----~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~------~-------~~  136 (175)
T 1fnl_A           74 NLS----TLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------H-------HN  136 (175)
T ss_dssp             SSS----CCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------E-------EC
T ss_pred             eCC----cccccEEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC------C-------CC
Confidence            664    235667777776655544455678899999999999887665 99999999887421      1       25


Q ss_pred             eeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       266 ~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ..|.|.+++.+|+|.|+|.|.|..|.   ..+..+.|.|.+
T Consensus       137 ~~L~i~~v~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~  174 (175)
T 1fnl_A          137 SDFHIPKATLKDSGSYFCRGLVGSKN---VSSETVNITITQ  174 (175)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEE---EECCCEEEEEEC
T ss_pred             CEEEEcccChhhCeEEEEEEEcCCCC---ccCccEEEEEeC
Confidence            78999999999999999999997643   355667777765

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=1.3e-24  Score=169.46  Aligned_cols=185  Identities=19%  Similarity=0.281  Sum_probs=137.6

Q ss_pred             eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------cccccCcEEeceeEEEEeeeecCCCeeE
Q psy15235        110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------ATELSGRLTQSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------~~~~~~~~~~~~~~l~i~~~~~~d~G~y  181 (323)
                      +...+....+.+|++++|.|.+.+.+   .+.+.|++++..+..        ......++......|.|.+++.+|+|.|
T Consensus         4 v~~~~~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y   80 (212)
T 1f97_A            4 VYTAQSDVQVPENESIKLTCTYSGFS---SPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (212)
T ss_dssp             EECSCSEEEEETTCCEEEECEEESCS---SEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             EEecCCCeEEEcCCCEEEEeEeCCCC---CcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEE
Confidence            34466667788999999999999877   789999998765321        1122455554448899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEE-EecCCCCcEEEEECCe-eeeccCC-------
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECL-VVGSPPPTVEWRIGND-TYFRSQG-------  251 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~-~~g~p~~~~~W~~~~~-~~~~~~~-------  251 (323)
                      +|.+ .+..+.......+.|.|..+|.+. .+....+.+|+.+.|.|. +.++|.+.+.|++++. .+.....       
T Consensus        81 ~C~~-~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~  159 (212)
T 1f97_A           81 TCMV-SEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN  159 (212)
T ss_dssp             EEEE-EETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSS
T ss_pred             EEEE-EccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccC
Confidence            9999 665443345677788888777554 344566889999999999 6889999999999998 7654322       


Q ss_pred             -eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        252 -RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       252 -~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                       ++...      .....|.|.++..+|.|.|+|.|.|..|.  ...+..+.|.|.+
T Consensus       160 ~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~s~~~~l~V~~  207 (212)
T 1f97_A          160 SSFTID------PKSGDLIFDPVTAFDSGEYYCQAQNGYGT--AMRSEAAHMDAVE  207 (212)
T ss_dssp             SCEEEC------TTTCCEEESSCCGGGCEEEEEEEECSSSC--CEECCCEEEEEES
T ss_pred             ceeEec------CCCceEEEEecChhhCcEEEEEEccccCC--ccccceEEEEEEE
Confidence             11111      13678999999999999999999999976  2235667777765

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=5e-24  Score=162.17  Aligned_cols=170  Identities=20%  Similarity=0.322  Sum_probs=131.2

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEE
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .+...|....+.+|++++|.|.+.+.+   .+.+.|++++..+..    ..+..      .....|.|.+++.+|+|.|+
T Consensus         4 ~~~~~p~~~~v~~G~~v~l~C~~~~~p---~~~v~W~k~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   76 (182)
T 1rhf_A            4 KLMGAPVKLTVSQGQPVKLNCSVEGME---EPDIQWVKDGAVVQN----LDQLYIPVSEQHWIGFLSLKSVERSDAGRYW   76 (182)
T ss_dssp             ---CCCEEEEEETTCCEEEEEEEESCS---SCCEEEEETTEECCS----SEEEEEEEETTEEEEEEEESSCCGGGCEEEE
T ss_pred             EEEeCCcceEEeCCCcEEEEEEEeCCC---CCeEEEEECCeecCC----CCceEEEecCCCceEEEEEeecCcccCeEEE
Confidence            344466667788999999999999877   689999999988876    33222      12478999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEecceeee-eceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCC
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIMKPTAKL-VETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPE  260 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~  260 (323)
                      |.+ .+..+ ......+.|.|..+|.+.. +....+.+|+.+.|.|.+.|+|.| .+.|++++..+.....         
T Consensus        77 C~~-~~~~~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~---------  145 (182)
T 1rhf_A           77 CQV-EDGGE-TEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------  145 (182)
T ss_dssp             EEE-SSCTT-CEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------
T ss_pred             EEE-EcCCC-cEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---------
Confidence            999 66522 2345677888888887763 445678899999999999999999 9999999988743211         


Q ss_pred             CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc-eeEEEEEEc
Q psy15235        261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN-EAFVYVRVK  305 (323)
Q Consensus       261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~-~~~~~l~v~  305 (323)
                         ....|.|.++  +|+|.|+|.|.|..|.    . ...+.|.|+
T Consensus       146 ---~~~~L~i~~~--~d~G~Y~C~a~N~~g~----~~s~~~~l~Vk  182 (182)
T 1rhf_A          146 ---SPSVLNVTGV--TQSTMFSCEAHNLKGL----ASSRTATVHLQ  182 (182)
T ss_dssp             ---SSEEEEECCC--SSCEEEEEEEEETTEE----EECCCEEEEEC
T ss_pred             ---CceEEEEecc--ccCeEEEEEEECCCCC----cccceEEEEeC
Confidence               3688999988  5899999999999976    3 346666653

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.93  E-value=3.1e-25  Score=171.19  Aligned_cols=165  Identities=18%  Similarity=0.218  Sum_probs=116.2

Q ss_pred             eEEecCCcEEEEEE---eecCCCCCCceEEEEECCeeccc-------------cccccCcEE----eceeEEEEeeeecC
Q psy15235        117 KVFEYRVPFTLKCN---VTSPPPGDDYQIVWYKGNKSITE-------------ATELSGRLT----QSKDSITIRKTTVD  176 (323)
Q Consensus       117 ~~~~~g~~v~l~C~---~~~~~~~~~~~i~W~~~~~~~~~-------------~~~~~~~~~----~~~~~l~i~~~~~~  176 (323)
                      ..+..|++++|.|.   +.+.|   .+.|+|+|+|.....             ......++.    .....|.|.+++.+
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p---~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   79 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGP---EIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS   79 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCST---TSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEEcCCCEEEEeeeeccCCCC---CcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHH
Confidence            45678999999995   45556   789999998753321             001112222    44678999999999


Q ss_pred             CCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec---cCCe
Q psy15235        177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR---SQGR  252 (323)
Q Consensus       177 d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~---~~~~  252 (323)
                      |+|.|+|.+ .|.  .......+.|.|..+|.+. .+....+.+|+.+.|.|.+.|+|.|.+.|++++..+..   .+.+
T Consensus        80 D~G~Y~C~a-~n~--~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r  156 (203)
T 4fa8_A           80 HDGNYLCRM-KLG--ETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG  156 (203)
T ss_dssp             GCEEEEEEE-EET--TEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------C
T ss_pred             HCeEEEEEE-EcC--CCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccce
Confidence            999999999 665  3345667788888888776 34456678899999999999999999999987765432   2334


Q ss_pred             eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        253 IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       253 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +.+.  .++  .-..|.|.++..+|+|.|+|.|.|..|.
T Consensus       157 ~~~~--~~g--~l~il~i~~v~~~D~G~YtC~A~N~~G~  191 (203)
T 4fa8_A          157 VMKE--KDG--SLSVAVDLSLPKPWHLPVTCVGKNDKEE  191 (203)
T ss_dssp             CEEC--TTS--CEEEEEEEEECSSCCCCEEEEEESSSCE
T ss_pred             EEEe--CCC--CEEEEEECCCCHHHCEEEEEEEEcCCCE
Confidence            4443  111  1244566799999999999999999976

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.93  E-value=6.2e-25  Score=191.36  Aligned_cols=260  Identities=14%  Similarity=0.183  Sum_probs=151.7

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee--------------ccCcceEEEeeeeCCeEEEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS--------------SVDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~--------------~~~~~~~~~~~~~~~~~~l~   83 (323)
                      .+..+..+.+.+|++++|.|.+.+    .+.+.|+|+  |..+...              ....+..+..+...+...|.
T Consensus         3 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (457)
T 1hzh_H            3 QLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYME   82 (457)
T ss_dssp             EEEECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEE
Confidence            455667788999999999999542    468999994  3322110              01122222222224567788


Q ss_pred             Eeecc--cCcceEEEeeccCC------------ccceeeeeee------CCceeE------EecCCcEEEEEEeecCCCC
Q psy15235         84 IHEAI--LESGYVQSSLFIPR------------MNAITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPG  137 (323)
Q Consensus        84 i~~~~--~~G~Y~C~~~~~~~------------~~~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~  137 (323)
                      |.+++  |+|.|+|.+.+..+            .......+.+      .|.+..      +.+|+.++|.|.+.+..|.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  162 (457)
T 1hzh_H           83 LRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (457)
T ss_dssp             ECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSC
T ss_pred             ECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCC
Confidence            87766  49999999987643            1100111111      122111      3579999999999987442


Q ss_pred             CCceEEEEECCeecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE--------
Q psy15235        138 DDYQIVWYKGNKSITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI--------  204 (323)
Q Consensus       138 ~~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~--------  204 (323)
                       .+.|.|++++..+...     ...++++ .....|.|.++..+| |.|+|.+ .|..+.  ......+.+.        
T Consensus       163 -~~~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-G~Y~C~a-~n~~~~--~~~~~~v~~~~~~~~~~~  236 (457)
T 1hzh_H          163 -PVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHKPSN--TKVDKKAEPKSCDKTHTC  236 (457)
T ss_dssp             -CCEEEETTTTBCTTEEEEEEEECTTSCE-EEEEEEEECSGGGGT-SCCEEEE-EEGGGT--EEEEEECCCCCSCSSCSC
T ss_pred             -CeEEEEEeCCEeccceEcCceECCCCCE-EEEEEEEecccccCC-ceEEEEE-EeCCCC--cceeEEecccCCCccccc
Confidence             2799999998654320     0011222 223578999999889 9999999 665322  1122222211        


Q ss_pred             ---------eccee-eeecee--EEeeCCeEEEEEEEecCCCC----cEEEEECCeeeeccCCeeeeecCCCCC--Ccce
Q psy15235        205 ---------MKPTA-KLVETL--TVIEGEKLRLECLVVGSPPP----TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANS  266 (323)
Q Consensus       205 ---------~~p~~-~~~~~~--~~~~g~~~~l~C~~~g~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~  266 (323)
                               .+|.+ ..++..  .+.+|+.+.|.|.+.|.|++    .+.|++++..+..........  ..++  ...+
T Consensus       237 ~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~--~~~g~~~~~~  314 (457)
T 1hzh_H          237 PPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE--QYNSTYRVVS  314 (457)
T ss_dssp             CSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEE--CTTSCEEEEE
T ss_pred             CCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccccccee--cCCCcEEEEE
Confidence                     13433 222221  15679999999999988553    899999998875321111111  1111  0112


Q ss_pred             eEEEeecCcCCCeEEEEEEeecccC
Q psy15235        267 VLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       267 ~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .|.|.....+|.|.|+|.|.|..+.
T Consensus       315 ~l~i~~~d~~d~G~Y~C~a~n~~~~  339 (457)
T 1hzh_H          315 VLTVLHQDWLNGKEYKCKVSNKALP  339 (457)
T ss_dssp             EECCCHHHHHHTCCEEEEEECTTSS
T ss_pred             EEEECHHHccCCCcEEEEEeCCCCC
Confidence            3333333334499999999987644

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.93  E-value=1e-24  Score=165.09  Aligned_cols=169  Identities=19%  Similarity=0.254  Sum_probs=130.4

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.+...+....+.+|++++|.|.+.+.++  ...+.|++++..+..          ....|.|.+++.+|+|.|+|.+ .
T Consensus         5 P~i~~~p~~~~v~~G~~v~L~C~~~~~~~--~~~i~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~-~   71 (176)
T 1f2q_A            5 PKVSLNPPWNRIFKGENVTLTCNGNNFFE--VSSTKWFHNGSLSEE----------TNSSLNIVNAKFEDSGEYKCQH-Q   71 (176)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC------CCEEEETTEECSC----------CSSEEEECSCCGGGCEEEEEEC-T
T ss_pred             CEEEcCCCCcceecCCcEEEEEeCCCCCC--cceEEEEECCeECCC----------CceEEEEeccceecCEEEEEEc-C
Confidence            33444555566889999999999988773  247999999988765          4678999999999999999999 6


Q ss_pred             CCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcce
Q psy15235        188 PKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANS  266 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (323)
                      +.    .....+.|.|..++.+.......+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....             ...
T Consensus        72 ~~----~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------------~~~  134 (176)
T 1f2q_A           72 QV----NESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------------ENH  134 (176)
T ss_dssp             TS----SCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------------CSS
T ss_pred             Cc----cccccEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-------------CCC
Confidence            65    235567777776665555556678899999999999 466777999999998774211             257


Q ss_pred             eEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        267 VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       267 ~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      .|.|.++..+|+|.|+|.|.|..+.   ..+..+.|.|.++|.
T Consensus       135 ~L~i~~v~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          135 NISITNATVEDSGTYYCTGKVWQLD---YESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEE---EECCCEEEEEECSCC
T ss_pred             eEEECCCCcccCEEEEEEEEeCCcc---eEecCEEEEEecCCC
Confidence            8999999999999999999997532   355668888887764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.93  E-value=3.2e-24  Score=165.13  Aligned_cols=175  Identities=15%  Similarity=0.238  Sum_probs=133.6

Q ss_pred             eeeeCCceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccccCcEE-ec--------eeEEEEeeeecCCC
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLT-QS--------KDSITIRKTTVDDA  178 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~--------~~~l~i~~~~~~d~  178 (323)
                      .+...|....+.+|++++|.|.+. +.+   .+.+.|++++..+........++. ..        ...|.|.+++.+|+
T Consensus         4 ~~~~~p~~~~v~~G~~v~l~C~~~~~~p---~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            4 PFVGNPGNITGARGLTGTLRCQLQVQGE---PPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             SEEECCCCEEECTTCCEEEEEEEEEESS---CCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             eeccChhheEEecCCcEEEecccccCCC---CcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence            344567777888999999999999 777   689999999998876211111222 11        57899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeee
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLS  256 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~  256 (323)
                      |.|+|.+ .+..+. .....+.|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.| .+.|++++..+......    
T Consensus        81 G~Y~C~~-~~~~~~-~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----  154 (195)
T 2c5d_C           81 GQYQCLV-FLGHQT-FVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----  154 (195)
T ss_dssp             EEEEEEE-EETTEE-EECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----
T ss_pred             cEEEEEE-EeCCCc-eecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----
Confidence            9999999 555322 23445778888888665 3445678889999999999999999 99999999887543221    


Q ss_pred             cCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCce-eEEEEEE
Q psy15235        257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE-AFVYVRV  304 (323)
Q Consensus       257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~-~~~~l~v  304 (323)
                            .....|.|.+++  |+|.|+|.|.|..|.    .. ..+.|.|
T Consensus       155 ------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~----~~s~~~~l~V  191 (195)
T 2c5d_C          155 ------GPQRSLHVPGLN--KTSSFSCEAHNAKGV----TTSRTATITV  191 (195)
T ss_dssp             ------SCCEEEEECCCS--SCEEEEEEEEETTEE----EECCCEEEEE
T ss_pred             ------CCCCeEEEcccc--cCceEEEEEEcCCCc----eEEEEEEEEE
Confidence                  146889999987  789999999999976    43 6777777

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=164.26  Aligned_cols=176  Identities=23%  Similarity=0.287  Sum_probs=130.8

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ....+...++.+.|.|.+.+.+|  .+.+.|+++|..+..    ..++.    .....|.|.+++.+|+|.|+|.+ .+.
T Consensus         9 ~~v~l~c~~~~~~l~C~~~~~~p--~~~i~W~~~g~~i~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~-~n~   81 (212)
T 2r15_A            9 TDLKIQSTAEGIQLYSFVTYYVE--DLKVNWSHNGSAIRY----SDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL-FDG   81 (212)
T ss_dssp             CCCEEEECSSEEEEEEEBSSCCS--SCEEEEEETTEECCC----CSSEEEEEETTEEEEEEESCCGGGCEEEEEEE-ECS
T ss_pred             CcEEEEEcCceEEEEEEEeccCC--CceEEEEECCEEccC----CCeEEEEEeCCEEEEEECCCCcccCEEEEEEE-ecC
Confidence            34456678899999999998655  689999999998876    45544    34467999999999999999999 665


Q ss_pred             CCCCCCceeeeeEEEe--------------------cc-eee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235        190 STNTTPLAQADFDVIM--------------------KP-TAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF  247 (323)
Q Consensus       190 ~~~~~~~~~~~l~v~~--------------------~p-~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~  247 (323)
                      .  ......+.+.+..                    .| .+. .+....+.+|+.+.|.|.+.|+|.|.+.|++++..+.
T Consensus        82 ~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~  159 (212)
T 2r15_A           82 K--TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA  159 (212)
T ss_dssp             S--CEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEEC
T ss_pred             C--cceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECc
Confidence            2  2223333443321                    22 222 2335678899999999999999999999999999886


Q ss_pred             ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        248 RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ... ++.+....   .....|.|.++..+|.|.|+|.|.|..|.    ....+.|.|..
T Consensus       160 ~~~-~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~  210 (212)
T 2r15_A          160 QTD-HCNLKFEA---GRTAYFTINGVSTADSGKYGLVVKNKYGS----ETSDFTVSVFI  210 (212)
T ss_dssp             CCS-SEEEEEET---TTEEEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEEEEEC
T ss_pred             cCC-CEEEEEcC---CCEEEEEEcCcchHHCeEEEEEEEcCCCc----EEEEEEEEEEc
Confidence            543 34433100   12469999999999999999999999966    77777777753

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.92  E-value=1.8e-24  Score=166.97  Aligned_cols=188  Identities=16%  Similarity=0.188  Sum_probs=128.2

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.+...|.. .+.+|++++|.|.+.+.+   . .+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+ .
T Consensus         6 P~i~~~p~~-~v~~G~~v~L~C~~~~~~---~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~   78 (198)
T 1ugn_A            6 PTLWAEPGS-VITQGSPVTLRCQGGQET---Q-EYRLYREKKTAPWITR-IPQELVKKGQFPIPSITWEHTGRYRCYY-G   78 (198)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTTC---C-CEEEEESSSCCHHHHT-SCHHHHTTTEEEESSCCGGGCEEEEEEE-E
T ss_pred             CeEeccCCC-cccCCCcEEEEEEecCCC---c-EEEEEECCcccccccc-ccccCCcccEEEECCCCHHHCeEEEEEE-E
Confidence            444455553 677999999999998876   3 6999999987743000 1111145678999999999999999999 6


Q ss_pred             CCC-CCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235        188 PKS-TNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT  263 (323)
Q Consensus       188 ~~~-~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
                      +.. +....+..+.|.|..   +|.+...+...+.+|+.++|.|.+.+. .+.+.|++++..+.....+....  . .+.
T Consensus        79 n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~--~-~~~  154 (198)
T 1ugn_A           79 SDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPH--A-RGS  154 (198)
T ss_dssp             ETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC---------C
T ss_pred             CCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccccccc--C-CCc
Confidence            654 322345667777776   466665555678899999999999888 78999999998764322221111  0 111


Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEcc
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKG  306 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~  306 (323)
                      ....|+|.+++.+|+|.|+|.|.|..+.. ....+..+.|.|.+
T Consensus       155 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (198)
T 1ugn_A          155 SRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVLG  198 (198)
T ss_dssp             CEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEEC
T ss_pred             ceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEecC
Confidence            35889999999999999999999987531 12345677777653

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.92  E-value=5.4e-24  Score=166.84  Aligned_cols=172  Identities=22%  Similarity=0.347  Sum_probs=134.0

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .+.+...|....+.+|+.+.|.|.+.+.+   .+.+.|++++..+..         .....|.|.+++.+|+|.|+|.+ 
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~~-   84 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHP---FVQYQWFKMNKEIPN---------GNTSELIFNAVHVKDAGFYVCRV-   84 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTT---SSEEEEEETTEECTT---------CCSSEEEETTCCGGGCEEEEEEE-
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCC---CCEEEEEECCEECCC---------CCCCEEEEccCChhhCeEeEEEE-
Confidence            34455567777788999999999998877   689999999998876         34678999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEec---------------ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC
Q psy15235        187 DPKSTNTTPLAQADFDVIMK---------------PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ  250 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~~---------------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~  250 (323)
                      .+..+. .....+.|.|...               |.+. .+....+..|+.+.|.|.+.|+|.+.+.|++++..+... 
T Consensus        85 ~n~~~~-~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~-  162 (218)
T 3k0w_A           85 NNNFTF-EFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-  162 (218)
T ss_dssp             ECTTCC-EECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-
T ss_pred             EcCCCC-ceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC-
Confidence            665322 2245566777654               3343 334567889999999999999999999999999887532 


Q ss_pred             CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                                   ....|.|.++..+|+|.|+|.|.|..|.   ..+..+.|.|.+.+.
T Consensus       163 -------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~---~~s~~~~l~V~~~~~  205 (218)
T 3k0w_A          163 -------------TKKLYMVPYVDLEHQGTYWCHVYNDRDS---QDSKKVEIIIDELNN  205 (218)
T ss_dssp             -------------CSSEEEESSCCGGGCEEEEEEEECSSCE---EECCCEEEEECC---
T ss_pred             -------------CCCEEEEeecChhcCEEEEEEEEcCCCC---ceeeeEEEEEeCCcc
Confidence                         2468999999999999999999998754   256677787876443

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.92  E-value=1.2e-24  Score=167.59  Aligned_cols=172  Identities=19%  Similarity=0.193  Sum_probs=113.5

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.+...|.. .+.+|++++|.|.+.+.+   . .+.|+|++..+..... ..........|.|.+++.+|+|.|+|.+ .
T Consensus         6 P~i~~~p~~-~v~~G~~v~L~C~~~~~~---~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~   78 (196)
T 2d3v_A            6 ATLWAEPGS-VISRGNSVTIRCQGTLEA---Q-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYY-Y   78 (196)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTTC---C-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEE-E
T ss_pred             CEEEeCCCC-cccCCCeEEEEEeCCCCC---c-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEE-e
Confidence            445555553 677999999999998866   4 9999999987653100 0111245678999999999999999999 6


Q ss_pred             CCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCc
Q psy15235        188 PKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA  264 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  264 (323)
                      +..+....+..+.|.|..   +|.+...+...+.+|+.++|.|.+.+.| +.+.|++++..+..........   ..+..
T Consensus        79 n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~---~~~~~  154 (196)
T 2d3v_A           79 SPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLT---PSGQF  154 (196)
T ss_dssp             ETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCC-SEEEEEEC---CCEEEEECEEC---TTSCE
T ss_pred             CCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccc---cCCCc
Confidence            654333345567777776   4666654455788999999999999988 8999999998764221111111   11113


Q ss_pred             ceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        265 NSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       265 ~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ...|+|.+++.+|+|.|+|.|.|..+
T Consensus       155 ~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          155 QALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             eeEEEeeecCcccCeeEEEEEEccCC
Confidence            58899999999999999999999764

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.92  E-value=3.7e-24  Score=166.95  Aligned_cols=190  Identities=22%  Similarity=0.353  Sum_probs=134.6

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc--cCcEEecee-----EEEEeeeecCCC
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL--SGRLTQSKD-----SITIRKTTVDDA  178 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~~-----~l~i~~~~~~d~  178 (323)
                      ..|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+......  ..+......     .+.|.++..+|+
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   84 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRP---TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE   84 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEES---CCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCC---CCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccC
Confidence            355666677777788999999999998877   6799999999887642111  112221222     234456689999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEec-c-eeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeee
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIMK-P-TAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKL  255 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~-p-~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~  255 (323)
                      |.|+|.+ .+..+. .......+.|... + ....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....++..
T Consensus        85 G~Y~C~~-~n~~g~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~  162 (212)
T 2v9r_A           85 GVYVCVA-RNYLGE-AVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI  162 (212)
T ss_dssp             EEEEEEE-EETTEE-EECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEE
T ss_pred             eEEEEEE-ECCCCc-eeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEc
Confidence            9999999 555322 1233455666553 2 2224446678899999999999 88999999999999998765555544


Q ss_pred             ecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCce-eEEEEEEcceecCcC
Q psy15235        256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE-AFVYVRVKGKSFGYD  312 (323)
Q Consensus       256 ~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~-~~~~l~v~~~~~~~~  312 (323)
                      .        ...|.|.++..+|+|.|+|.|.|..|.    .. ..+.|.|.++|....
T Consensus       163 ~--------~~~L~i~~~~~~d~G~Y~C~a~N~~g~----~~s~~~~l~V~~~P~~~~  208 (212)
T 2v9r_A          163 R--------GGKLMITYTRKSDAGKYVCVGTNMVGE----RESEVAELTVLERPSFVK  208 (212)
T ss_dssp             E--------TTEEEESSCCGGGCEEEEEEEEETTEE----EECCCEEEEEEC------
T ss_pred             c--------CCeEEEeeCCHhhCeeEEEEEecccCc----eecceEEEEEEeCchHhh
Confidence            4        568999999999999999999999965    33 348888888876553

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=3.3e-26  Score=198.12  Aligned_cols=260  Identities=13%  Similarity=0.138  Sum_probs=157.0

Q ss_pred             EEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee--ec------------cCcceEEEeeeeCCeEEEEE
Q psy15235         25 ITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ--SS------------VDSGFAATANLTEDNFKYSI   84 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~--~~------------~~~~~~~~~~~~~~~~~l~i   84 (323)
                      +..+.++.+.+|++++|.|.+.+    .+.+.|+|++  ..+..  ..            ...+..+..+...+...|.|
T Consensus         3 l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   82 (434)
T 1igy_B            3 LQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHL   82 (434)
T ss_dssp             EECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEE
T ss_pred             eECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEE
Confidence            45667788999999999999653    4689999963  32211  00            01111111111234456777


Q ss_pred             eecc--cCcceEEEeeccCCccceeeeeee------CCcee------EEecCCcEEEEEEeecCCCCCCc-eEEEEECCe
Q psy15235         85 HEAI--LESGYVQSSLFIPRMNAITGNYDI------EPKYK------VFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNK  149 (323)
Q Consensus        85 ~~~~--~~G~Y~C~~~~~~~~~~~~~~~~~------~~~~~------~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~  149 (323)
                      .+++  |+|.|+|.+.+..........+.+      .|.+.      .+.+|+.++|.|.+.+..|  .+ .|.|++++.
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P--~p~~v~W~k~~~  160 (434)
T 1igy_B           83 SSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP--EPVTVTWNSGSL  160 (434)
T ss_dssp             CSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBS--SCCEEEETTTTB
T ss_pred             CCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecC--CCeEEEEeeCCc
Confidence            6665  599999999874322110111111      12221      1357999999999998743  44 999999987


Q ss_pred             ecccc----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE----------ec--ceee-ee
Q psy15235        150 SITEA----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI----------MK--PTAK-LV  212 (323)
Q Consensus       150 ~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~----------~~--p~~~-~~  212 (323)
                      .+...    ....+.+ .....|.|.++..+| |.|+|.+ .|..+...  ....+.+.          ..  |.+. .+
T Consensus       161 ~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-g~Y~C~a-~n~~~~~~--~~~~~~~~~~~~~v~~~~~~~~p~v~~~~  235 (434)
T 1igy_B          161 SSGVHTFPAVLQSDLY-TLSSSVTVPSSPRPS-ETVTCNV-AHPASSTK--VDKKIVPRDCGCKPCICTVPEVSSVFIFP  235 (434)
T ss_dssp             CSSEEECCCEECSSCE-EEEEEEEEETTTTTS-SCCEEEE-ECTTTTCC--EEEECCCCCCCCCCCCCCCSSSCCEEEEC
T ss_pred             CCCeEecCceecCCcE-EEEEEEEEcchhcCC-CcEEEEE-EeCCCCcc--ceeeccCCCCCCccccCCCCcCcEEEEeC
Confidence            54210    0001222 223568898888888 9999999 77744322  22222221          00  3332 22


Q ss_pred             ceeE--EeeCCeEEEEEEEecCC----CCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEe
Q psy15235        213 ETLT--VIEGEKLRLECLVVGSP----PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN  286 (323)
Q Consensus       213 ~~~~--~~~g~~~~l~C~~~g~p----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~  286 (323)
                      +...  +.+|+.+.|.|.+.|.|    .+.+.|++++..+...................++|.|.++..+|.|.|+|.|.
T Consensus       236 p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  315 (434)
T 1igy_B          236 PKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVN  315 (434)
T ss_dssp             CCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBC
T ss_pred             CChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEE
Confidence            2222  77899999999999884    34899999997764321111111001111235689999999999999999999


Q ss_pred             ecccC
Q psy15235        287 NVATR  291 (323)
Q Consensus       287 n~~g~  291 (323)
                      |..|.
T Consensus       316 n~~~~  320 (434)
T 1igy_B          316 SAAFP  320 (434)
T ss_dssp             CSSCS
T ss_pred             CCCCC
Confidence            99875

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.92  E-value=1e-23  Score=166.58  Aligned_cols=187  Identities=17%  Similarity=0.317  Sum_probs=136.8

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC-cEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT  193 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  193 (323)
                      ....+.+|++++|.|.+.+.+   .+.+.|++++..+........ ........|.|.+++.+|+|.|+|.+ .+..+  
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~n~~~--  100 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNP---MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV-ENEYG--  100 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEES---CCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEE-EETTE--
T ss_pred             eeEEEccCCCEEEEEecccCC---CCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEE-ecccC--
Confidence            566788999999999999887   679999999998865222211 22245668999999999999999999 66632  


Q ss_pred             CCceeeeeEEEec----ceee--eeceeEEeeCCeEEEEEEEecCCCCcEEEEE----CCeeeeccCCeeeeec--CCCC
Q psy15235        194 TPLAQADFDVIMK----PTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEWRI----GNDTYFRSQGRIKLSE--HPEK  261 (323)
Q Consensus       194 ~~~~~~~l~v~~~----p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~~~~~~--~~~~  261 (323)
                      .......+.|...    |.+.  .+....+..|+.+.|.|.+.++|.+.+.|++    ++..+...........  ....
T Consensus       101 ~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~  180 (231)
T 3ojm_B          101 SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGIN  180 (231)
T ss_dssp             EEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTT
T ss_pred             cccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccc
Confidence            3455666666652    2222  2446678899999999999999999999999    7776654332221110  0111


Q ss_pred             CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        262 GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       262 ~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      ......|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.++|.+.
T Consensus       181 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          181 SSNAEVLALFNVTEADAGEYICKVSNYIGQ----ANQSAWLTVLPKQQAP  226 (231)
T ss_dssp             CSCTTEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEECCC---
T ss_pred             cCCccEEEEecCCHHHCeEEEEEEEeccce----EeeEEEEEEecCCCCC
Confidence            224577999999999999999999999966    7888899998887654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.92  E-value=3.3e-24  Score=167.91  Aligned_cols=173  Identities=23%  Similarity=0.374  Sum_probs=125.8

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeE----EEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS----ITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~----l~i~~~~~~d~G~y~  182 (323)
                      .|.+...+....+.+|++++|.|.+.+.+   .+.|.|+++|..+........++......    +.|.+++.+|+|.|+
T Consensus         9 ~P~i~~~p~~~~v~~G~~v~L~C~~~g~p---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            9 SPRIIEHPTDLVVKKNEPATLNCKVEGKP---EPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCEEEECCCCEEECTTSCEEECCEEECSS---CCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred             CCEEecCCCceEEeCCCcEEEEEEcCCCC---CCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence            44555566667788999999999999877   68999999999886632223333321222    267888999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEe-cc-eeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeecc-------CCe
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIM-KP-TAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRS-------QGR  252 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~-~p-~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~-------~~~  252 (323)
                      |.+ .+..+.. ......+.|.. +| ....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...       ..+
T Consensus        86 C~~-~n~~g~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~  163 (217)
T 2vr9_A           86 CVA-KNRVGQA-VSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR  163 (217)
T ss_dssp             EEE-EETTEEE-ECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCS
T ss_pred             EEE-ecCCCcc-ccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCc
Confidence            999 5553221 12344555544 23 3334446678899999999999 89999999999999887632       223


Q ss_pred             eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        253 IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       253 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ....       ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus       164 ~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~  195 (217)
T 2vr9_A          164 VRIV-------DGGNLLISNVEPIDEGNYKCIAQNLVGT  195 (217)
T ss_dssp             EEEE-------TTTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             EEec-------CCCcEEEeeCCHHHCeEEEEEEEcccce
Confidence            3333       3568999999999999999999999976

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.92  E-value=4.7e-24  Score=164.34  Aligned_cols=184  Identities=17%  Similarity=0.149  Sum_probs=130.5

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE--E-eceeEEEEeeeecCCCeeEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL--T-QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~-~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      |.+...|.. .+.+|++++|.|.+.+ +   .+.+.|+|++..+..    ....  . .....|.|.+++.+|+|.|+|.
T Consensus         6 P~i~~~p~~-~v~~G~~v~L~C~~~~-~---~~~~~w~k~g~~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   76 (196)
T 3p2t_A            6 PTLWAEPGS-VISWGNSVTIWCQGTL-E---AREYRLDKEESPAPW----DRQNPLEPKNKARFSIPSMTEDYAGRYRCY   76 (196)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCT-T---CCEEEEEETTSCSCS----EEECCCSSSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CEEEccCCC-cCCCCCcEEEEeeCCC-C---CCEEEEEECCCCCcc----cccccccCCceEEEEeccCCcccCceEEEE
Confidence            444445555 6788999999999988 4   479999999987654    1111  1 4567899999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCC
Q psy15235        185 LIDPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEK  261 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~  261 (323)
                      + .|..+....+..+.|.|..   +|.+...+...+.+|+.++|.|.+.+. ++.+.|++++..+..........    .
T Consensus        77 a-~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~----~  150 (196)
T 3p2t_A           77 Y-RSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHG----A  150 (196)
T ss_dssp             E-EETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEE----E
T ss_pred             E-eCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccccc----c
Confidence            9 6664423445566777753   456665555578899999999999874 56899999998664322111110    0


Q ss_pred             CCcceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEcc
Q psy15235        262 GTANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKG  306 (323)
Q Consensus       262 ~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~  306 (323)
                      ......|.|.+++.+|+|.|+|.|.|..+.. ....+..+.|.|.+
T Consensus       151 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~G  196 (196)
T 3p2t_A          151 QQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVSG  196 (196)
T ss_dssp             EEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC-
T ss_pred             cCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeCC
Confidence            0136789999999999999999999998621 12345566776653

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.92  E-value=1.3e-23  Score=158.08  Aligned_cols=164  Identities=21%  Similarity=0.314  Sum_probs=127.2

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      +.+.+.|....+.+|+++.|.|.+.+.++  .+.+.|++++..+..          ....+.+.+++.+|+|.|+|.+ .
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~--~~~~~W~~~g~~~~~----------~~~~~~~~~~~~~d~G~Y~C~~-~   71 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPE--SDSIQWFHNGNLIPT----------HTQPSYRFKANNNDSGEYTCQT-G   71 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSS--SSCEEEEETTEECTT----------CCSSEEEEECCGGGCEEEEEEE-T
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCC--cceEEEEECCeEccc----------CccceEEEecccccCeEEEEEE-e
Confidence            34444555556778999999999988753  469999999998875          2345677889999999999999 6


Q ss_pred             CCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcce
Q psy15235        188 PKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANS  266 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (323)
                      +.    .....+.|.|..++.+.......+.+|+.+.|.|.+ .+.|.+.+.|++++..+....             ...
T Consensus        72 ~~----~~s~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------------~~~  134 (170)
T 3ry4_A           72 QT----SLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-------------LDP  134 (170)
T ss_dssp             TS----BCCCCEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES-------------SCC
T ss_pred             CC----CceEeEEEEEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC-------------CCC
Confidence            54    345567788887776665556778899999999999 556678999999998764221             257


Q ss_pred             eEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        267 VLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       267 ~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      .|.|.+++.+|+|.|+|.|.|..|.   ..+..+.|.|
T Consensus       135 ~L~i~~v~~~d~G~Y~C~a~n~~g~---~~s~~~~l~V  169 (170)
T 3ry4_A          135 TFSIPQANHSHSGDYHCTGNIGYTL---FSSKPVTITV  169 (170)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEE---EECCCEEEEE
T ss_pred             eEEEEeccccCCEEEEEEEEeCcCc---cccccEEEEE
Confidence            7999999999999999999999864   1445556555

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.92  E-value=3.4e-24  Score=167.61  Aligned_cols=185  Identities=14%  Similarity=0.138  Sum_probs=128.9

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--ecee--EEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKD--SITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~--~l~i~~~~~~d~G~y~  182 (323)
                      .|.+...|. ..+.+|++++|.|.+.+ +   .+.|.|+|+|..+...   .....  ....  .|.|.+++.+|+|.|+
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~---~~~~~W~k~g~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   80 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQAIR-E---AYLTQLMIIKNSTYRE---IGRRLKFWNETDPEFVIDHMDANKAGRYQ   80 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCT-T---CSEEEEEEEETTEEEE---CSEECC----CCCEEEECSCCGGGCEEEE
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEcCC-C---CCEEEEEECCCccccc---ccccCCCCcceeeEEEEcccccccCEEEE
Confidence            344555555 46788999999999876 4   5799999998766431   11111  2344  8999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCC
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP  259 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~  259 (323)
                      |.+ .+..+....+..+.|.|..   +|.+...+...+.+|++++|.|.+.+.|.+.+.|+++|..+..  ......   
T Consensus        81 C~a-~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~--~~~~~~---  154 (218)
T 1uct_A           81 CQY-RIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP--QHQSGE---  154 (218)
T ss_dssp             EEE-EETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC--SEEECS---
T ss_pred             EEE-EcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccc--cccCCC---
Confidence            999 6653322334556677764   5666554466788999999999777777889999999986642  111111   


Q ss_pred             CCCCcceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEcceec
Q psy15235        260 EKGTANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       260 ~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~~~~  309 (323)
                          ....|.|.+++.+|+|.|+|.|.|..+.. ....+..+.|.|.+.++
T Consensus       155 ----~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~~  201 (218)
T 1uct_A          155 ----HPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIH  201 (218)
T ss_dssp             ----SSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC----
T ss_pred             ----ccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCCC
Confidence                36889999999999999999999864211 13356778888888754

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.92  E-value=3.8e-23  Score=180.91  Aligned_cols=259  Identities=12%  Similarity=0.122  Sum_probs=154.3

Q ss_pred             EEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee--------------ccCcceEEEeeeeCCeEEEEE
Q psy15235         25 ITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS--------------SVDSGFAATANLTEDNFKYSI   84 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~--------------~~~~~~~~~~~~~~~~~~l~i   84 (323)
                      +..+.++.+.+|++|+|.|.+.+    ...+.|+|+  |+.+...              ....+..+..+...+...|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (475)
T 1iga_A            5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL   84 (475)
T ss_pred             eccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEE
Confidence            44567788999999999999543    468999995  3222110              011122222222245567888


Q ss_pred             eecc--cCcceEEEeeccCCc--------cceeeeeee----CCceeE-----EecCCcEEEEEEeecCCCCCC-c-eEE
Q psy15235         85 HEAI--LESGYVQSSLFIPRM--------NAITGNYDI----EPKYKV-----FEYRVPFTLKCNVTSPPPGDD-Y-QIV  143 (323)
Q Consensus        85 ~~~~--~~G~Y~C~~~~~~~~--------~~~~~~~~~----~~~~~~-----~~~g~~v~l~C~~~~~~~~~~-~-~i~  143 (323)
                      .+++  |+|.|+|.+.+..+.        ......+..    .|.+..     ..+|+.++|.|.+.+.+|  . + .|.
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P--~~p~~v~  162 (475)
T 1iga_A           85 SSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFP--QEPLSVT  162 (475)
T ss_pred             CCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecC--CCceEEE
Confidence            7776  499999999876431        111111110    122221     247999999999999754  4 4 999


Q ss_pred             EEECCeeccccc------cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE-------------
Q psy15235        144 WYKGNKSITEAT------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI-------------  204 (323)
Q Consensus       144 W~~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~-------------  204 (323)
                      |++++.......      ..++.+ .....|.|.....+|+|.|+|.+ .+..+. .....+.+.|.             
T Consensus       163 W~~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~Y~C~a-~n~~~~-~~~~~v~l~V~~~~~~~~~~~~~~  239 (475)
T 1iga_A          163 WSESGQGVTARNFPPSQDASGDLY-TTSSQLTLPATQCLAGKSVTCHV-KHYTNP-SQDVTVPCPVPSTPPTPSPSTPPT  239 (475)
T ss_pred             EcCCCcccceEeCCceecCCCCcE-EEEEEEEechhHcCCCceEEEEE-EECCCC-ceeeeEecccccCccccccccccc
Confidence            999875332100      011122 22346888888888999999999 666431 12223332221             


Q ss_pred             -----ecceee-eec-eeEEeeCCeEEEEEEEecCCC---CcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeec
Q psy15235        205 -----MKPTAK-LVE-TLTVIEGEKLRLECLVVGSPP---PTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEA  273 (323)
Q Consensus       205 -----~~p~~~-~~~-~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v  273 (323)
                           .+|.+. .++ ...+.+|+.+.|.|.+.|.++   +.+.|  ++..+........... ..+ ....++|.|.++
T Consensus       240 ~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~-~~g~~~~~~~L~I~~~  316 (475)
T 1iga_A          240 PSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERD-LCGCYSVSSVLPGCAE  316 (475)
T ss_pred             CCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceEC-CCCCEEEEEEEEEchH
Confidence                 133332 222 222578999999999988754   58999  4444322111100000 001 113568999999


Q ss_pred             CcCCCeEEEEEEeecccC
Q psy15235        274 TMADRGNYYCHGNNVATR  291 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~~g~  291 (323)
                      ..+|.|.|+|.|.|..|.
T Consensus       317 ~~~d~G~Y~C~a~n~~~~  334 (475)
T 1iga_A          317 PWNHGKTFTCTAAYPESK  334 (475)
T ss_pred             HhccCCcEEEEEEcCCCC
Confidence            999999999999999865

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=2.1e-25  Score=193.08  Aligned_cols=254  Identities=12%  Similarity=0.187  Sum_probs=155.0

Q ss_pred             EEecCCcEEEEEEec---cCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeeccCCccce
Q psy15235         32 EIMEGAPINISCILT---IFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLFIPRMNAI  106 (323)
Q Consensus        32 ~v~~G~~v~L~C~~~---~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~~~~~~~~  106 (323)
                      .+.+|+.++|.|.+.   |.+ .++|++++..+.......  ............|.|..+.. .|.|+|.+.+..+....
T Consensus       130 ~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~--~~~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~  207 (434)
T 1igy_B          130 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA--VLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKV  207 (434)
T ss_dssp             CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCC--EECSSCEEEEEEEEEETTTTTSSCCEEEEECTTTTCCE
T ss_pred             ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCc--eecCCcEEEEEEEEEcchhcCCCcEEEEEEeCCCCccc
Confidence            457999999999953   444 899999987643210000  00000001112456665552 39999999987765322


Q ss_pred             ee--------------------eeee-CCceeE-EecCCcEEEEEEeecCCCC-CCceEEEEECCeeccccccc------
Q psy15235        107 TG--------------------NYDI-EPKYKV-FEYRVPFTLKCNVTSPPPG-DDYQIVWYKGNKSITEATEL------  157 (323)
Q Consensus       107 ~~--------------------~~~~-~~~~~~-~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~~~~~~~~~~------  157 (323)
                      ..                    .+.+ .+.... +..|+.++|.|.+.+.+|. ..+.|.|++++..+......      
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~  287 (434)
T 1igy_B          208 DKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQF  287 (434)
T ss_dssp             EEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCC
T ss_pred             eeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCC
Confidence            11                    1111 221111 5679999999999987531 03589999999776431110      


Q ss_pred             cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEecC-C
Q psy15235        158 SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-P  233 (323)
Q Consensus       158 ~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p  233 (323)
                      ++.+ .....|.|.++..+|+|.|+|.| .|..+.......+.+  .+..+|.+.... ......|+.+.|.|.+.|. |
T Consensus       288 ~~~~-~~~~~L~i~~~~~~d~G~Y~C~a-~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P  365 (434)
T 1igy_B          288 NSTF-RVVSALPIMHQDWLNGKEFKCRV-NSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFP  365 (434)
T ss_dssp             SSSC-CCCCCEECCHHHHHHTCCCBCCB-CCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBC
T ss_pred             CCcE-EEEEEEEECHHHccCCCcEEEEE-ECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeEC
Confidence            1111 22457899999999999999999 777544323333333  344566665322 2223457789999999885 4


Q ss_pred             CC-cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        234 PP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       234 ~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ++ .+.|+++|..+... .........++. ...+.|.|.....+|.|.|+|.|.|...
T Consensus       366 ~~~~v~W~k~g~~l~~~-~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          366 EDITVEWQSDGQAPENY-KNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             SCEEEEEEETTSCCSCC-EECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred             CCeEEEEEECCEecCCc-eeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCC
Confidence            33 89999999877421 111111001111 1346788888888899999999999873

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.92  E-value=5e-24  Score=185.62  Aligned_cols=246  Identities=15%  Similarity=0.244  Sum_probs=142.8

Q ss_pred             eEEecCCcEEEEEEec---cC-ceEEEEEcCccceeeccCcceEEEeeeeCC----eEEEEEeeccc-CcceEEEeeccC
Q psy15235         31 TEIMEGAPINISCILT---IF-EQVKWQLNGRNINQSSVDSGFAATANLTED----NFKYSIHEAIL-ESGYVQSSLFIP  101 (323)
Q Consensus        31 ~~v~~G~~v~L~C~~~---~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~-~G~Y~C~~~~~~  101 (323)
                      ..+.+|+.++|.|.+.   |. +.++|++++..+.....   ...  ...++    ...|.|.++.. .|.|+|.+.+..
T Consensus       142 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~---~~~--~~~~~~~~~~s~L~i~~~~~~dG~Y~C~a~n~~  216 (457)
T 1hzh_H          142 SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF---PAV--LQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKP  216 (457)
T ss_dssp             SCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEE---EEE--ECTTSCEEEEEEEEECSGGGGTSCCEEEEEEGG
T ss_pred             ccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEc---Cce--ECCCCCEEEEEEEEecccccCCceEEEEEEeCC
Confidence            3467999999999954   32 68999999876532100   000  01111    12456665542 499999999866


Q ss_pred             Cccceeeeee-------------------------e-CCceeE-EecCCcEEEEEEeecCCCCCC---ceEEEEECCeec
Q psy15235        102 RMNAITGNYD-------------------------I-EPKYKV-FEYRVPFTLKCNVTSPPPGDD---YQIVWYKGNKSI  151 (323)
Q Consensus       102 ~~~~~~~~~~-------------------------~-~~~~~~-~~~g~~v~l~C~~~~~~~~~~---~~i~W~~~~~~~  151 (323)
                      +.......+.                         + .+.... +..|+.++|.|.+.+.+|  .   ..|.|++++..+
T Consensus       217 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p--~p~~~~i~W~k~~~~~  294 (457)
T 1hzh_H          217 SNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSH--EDPEVKFNWYVDGVEV  294 (457)
T ss_dssp             GTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCT--TCCCCEEEEEETTEEE
T ss_pred             CCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccC--CCCceEEEEEeCCccc
Confidence            5432211111                         1 111111 346999999999998764  3   399999999877


Q ss_pred             cccccccCcEEeceeEEEEee---eecCC---CeeEEEEEEcCCCCCCCCceeeeeE----EEecceeeeec--eeEEee
Q psy15235        152 TEATELSGRLTQSKDSITIRK---TTVDD---AGQYSCRLIDPKSTNTTPLAQADFD----VIMKPTAKLVE--TLTVIE  219 (323)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~i~~---~~~~d---~G~y~C~~~~~~~~~~~~~~~~~l~----v~~~p~~~~~~--~~~~~~  219 (323)
                      ..... ..........+.+..   +...|   +|.|+|.| .|.....  .....+.    +..+|.+.+..  ...+..
T Consensus       295 ~~~~~-~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a-~n~~~~~--~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~  370 (457)
T 1hzh_H          295 HNAKT-KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKV-SNKALPA--PIEKTISKAKGQPREPQVYTLPPSRDELTK  370 (457)
T ss_dssp             CCCEE-EEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEE-ECTTSSS--CEEEEECCCCCCCBCCEEEEECCCGGGGGS
T ss_pred             ccccc-ccceecCCCcEEEEEEEEECHHHccCCCcEEEEE-eCCCCCC--cceEEEEcccCCCCCCeEEEECCCccccCC
Confidence            53100 001112222333332   22444   99999999 6653222  2222332    34466555322  122334


Q ss_pred             CCeEEEEEEEecCCCC--cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        220 GEKLRLECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      |+ +.|.|.+.|.|++  .+.|+++|..+.... ........++. ...+.|.|.....+|.|.|+|.|.|..
T Consensus       371 ~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~  441 (457)
T 1hzh_H          371 NQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYK-TTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  441 (457)
T ss_dssp             SE-EEEEEEEEEEBSSCCEEEEEETTEECCCEE-ECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             Cc-EEEEEEEEeEECCCCEEEEEECCEECccee-ecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECC
Confidence            55 9999999886443  899999998875321 11111001111 123567777777789999999999987

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.92  E-value=1.4e-23  Score=167.00  Aligned_cols=191  Identities=18%  Similarity=0.351  Sum_probs=133.3

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC-cEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG-RLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      +....+.+|+++.|.|.+.+.+   .+.+.|++++..+........ ........|.|.+++.+|+|.|+|.+ .+..  
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~-~~~~--   95 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNP---TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVV-ENKF--   95 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSS---CCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEE-EETT--
T ss_pred             CcceEEcCCCeEEEEEEecCCC---CceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEE-eecC--
Confidence            4456688999999999999887   679999999998865222211 22255678999999999999999999 6653  


Q ss_pred             CCCceeeeeEEEec----ceee--eeceeEEeeCCeEEEEEEEecCCCCcEEEEE----CCeeeeccCCeeeeec---CC
Q psy15235        193 TTPLAQADFDVIMK----PTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEWRI----GNDTYFRSQGRIKLSE---HP  259 (323)
Q Consensus       193 ~~~~~~~~l~v~~~----p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~~~~~~---~~  259 (323)
                      ........+.|...    |.+.  .+....+.+|+.+.|.|.+.+.|.+.+.|++    ++..+...........   ..
T Consensus        96 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~  175 (241)
T 3grw_A           96 GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS  175 (241)
T ss_dssp             EEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEEC
T ss_pred             CceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeee
Confidence            23445566666552    2222  2345667889999999999999999999999    7776654333221110   01


Q ss_pred             CCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcChh
Q psy15235        260 EKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRV  314 (323)
Q Consensus       260 ~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~~  314 (323)
                      ........|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.++|.+....
T Consensus       176 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~~p~~~~~~  226 (241)
T 3grw_A          176 ESVEADVRLRLANVSERDGGEYLCRATNFIGV----AEKAFWLSVHGPRAAEEEL  226 (241)
T ss_dssp             SBSEEEEEEEECSCCGGGCEEEEEEEECSSCE----EEEEEEEEC----------
T ss_pred             eecCCceEEEECcCCcccCcEEEEEEecCcce----EEEEEEEEecCCCCCCccc
Confidence            11123678999999999999999999999965    7889999998887765433

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.91  E-value=1.4e-23  Score=160.52  Aligned_cols=181  Identities=19%  Similarity=0.149  Sum_probs=127.4

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.+...|.. .+.+|++++|.|.+.+.    ...+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+ .
T Consensus         5 P~i~~~p~~-~v~~G~~v~L~C~~~~~----~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~   77 (188)
T 1oll_A            5 PFIWAEPHF-MVPKEKQVTICCQGNYG----AVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIY-R   77 (188)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTT----CCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEE-E
T ss_pred             CEEEeecCC-cCCCCCCEEEEEecCCC----CCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEe-c
Confidence            444554554 67899999999998753    368999999987653000 0111145678999999999999999999 5


Q ss_pred             CCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCc
Q psy15235        188 PKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA  264 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  264 (323)
                      +..+....+..+.|.|..   +|.+...+...+.+|+.++|.|.+.+ +++.+.|++++..+..  ......       .
T Consensus        78 ~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~--~~~~~~-------~  147 (188)
T 1oll_A           78 VGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV--QRGYGK-------V  147 (188)
T ss_dssp             ETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE--EEEECS-------S
T ss_pred             CCCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCC-CCCEEEEEECCccccc--cccCCC-------c
Confidence            543333345566777763   56666555667899999999999875 4568999999876542  111111       3


Q ss_pred             ceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ...|.|.+++.+|+|.|+|.|.|.... ....+..+.|.|.+
T Consensus       148 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~s~~S~~~~l~V~g  188 (188)
T 1oll_A          148 QAEFPLGPVTTAHRGTYRCFGSYNNHA-WSFPSEPVKLLVTG  188 (188)
T ss_dssp             EEEEEEEECCGGGCEEEEEECEEETTE-ECCCCCCEEEEEEC
T ss_pred             eeEEEECCCCcCCCcEEEEEEEcCCCc-CCCCCCcEEEEecC
Confidence            688999999999999999999997521 12345566776653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.91  E-value=5.4e-23  Score=169.50  Aligned_cols=187  Identities=20%  Similarity=0.300  Sum_probs=144.4

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y  181 (323)
                      .|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+...   ..++.     .....|.|.+++.+|+|.|
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p---~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y   77 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHP---KPIVKWYRQGKEIIAD---GLKYRIQEFKGGYHQLIIASVTDDDATVY   77 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSS---CCEEEEEETTEECCCC---SSSEEEEEETTTEEEEEESSCCGGGCSEE
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCC---CCeEEEEECCEEcccC---CCeEEEEECCCCEEEEEEccCChhhCeEE
Confidence            35555567777788999999999999887   7899999999887641   12332     2345899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEEecceeeee------ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeee
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLV------ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKL  255 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~------~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~  255 (323)
                      +|.+ .|..+  .....+.|.|..+|.+..+      ....+..|+.+.|.|.+.|.|.+.+.|++++..+... .++.+
T Consensus        78 ~C~a-~n~~g--~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~  153 (305)
T 2nzi_A           78 QVRA-TNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQV  153 (305)
T ss_dssp             EEEE-EETTE--EEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSS-SSCEE
T ss_pred             EEEE-EcCCC--CccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCC-CcEEE
Confidence            9999 66633  3466777888777765432      3456788999999999999999999999999877543 33333


Q ss_pred             ecCCCCCCcceeEEEee-cCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        256 SEHPEKGTANSVLQIDE-ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       256 ~~~~~~~~~~~~L~i~~-v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      ...    .....|.|.+ +..+|.|.|+|.|.|..|.    ....+.|.|.+.|.+.
T Consensus       154 ~~~----~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~----~~~~~~l~v~~~P~~p  202 (305)
T 2nzi_A          154 IVT----RSFTSLVFPNGVERKDAGFYVVCAKNRFGI----DQKTVELDVADVPDPP  202 (305)
T ss_dssp             EEC----SSEEEEEETTCCCSTTCEEEEEEEEETTEE----EEEEEEEEEEBCCCCC
T ss_pred             EEc----CCceEEEEecCCccCccEEEEEEEEeCCCc----eeeEEEEEEecCCCCC
Confidence            210    1357899999 9999999999999999966    7788888888776543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.91  E-value=9.1e-23  Score=155.48  Aligned_cols=167  Identities=25%  Similarity=0.440  Sum_probs=124.6

Q ss_pred             EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235        118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA  197 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  197 (323)
                      .+.+|++++|.|.+.+.++. ...+.|++++..+..    .... .....|.|.  ..+|+|.|+|.+ .+.     ...
T Consensus         9 ~v~~G~~v~l~C~~~~~~~p-~~~~~W~k~~~~l~~----~~~~-~~~~~l~i~--~~~d~G~Y~C~~-~n~-----~~~   74 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSATE-VTGHRWLKGGVVLKE----DALP-GQKTEFKVD--SDDQWGEYSCVF-LPE-----PMG   74 (184)
T ss_dssp             EEEETTEEEEEEEEESCSSC-CCEEEEESSSEEEEC----TTCC-CSEEEEEEC--GGGCCEEEEEEE-EST-----TSC
T ss_pred             EEecCCCEEEEEECCCCCCC-ceEEEEEeCCEEeec----cccc-CCcEEEEEe--chhhCeEEEEEE-ECC-----cCc
Confidence            46789999999999887621 239999999988865    2221 223455555  588999999999 653     346


Q ss_pred             eeeeEEEecceeeee-ceeEEeeCCeEEEEEEEecCC-CCcEEEEE---CCeeee-c-cCCeeeeecCCCCCCcceeEEE
Q psy15235        198 QADFDVIMKPTAKLV-ETLTVIEGEKLRLECLVVGSP-PPTVEWRI---GNDTYF-R-SQGRIKLSEHPEKGTANSVLQI  270 (323)
Q Consensus       198 ~~~l~v~~~p~~~~~-~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~L~i  270 (323)
                      ...|.|..+|.+... ....+.+|+.+.|.|.+.|+| .+.+.|++   ++..+. . ...++.+..  .  ...+.|.|
T Consensus        75 ~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~L~i  150 (184)
T 3b5h_A           75 TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS--S--QGRSELHI  150 (184)
T ss_dssp             EEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE--E--TTEEEEEE
T ss_pred             EEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEe--c--CCeeEEEE
Confidence            778888888877633 355688999999999999999 78999999   554433 2 224554441  1  13468999


Q ss_pred             eecC-cCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        271 DEAT-MADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       271 ~~v~-~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      .+++ .+|.|.|+|.|.|..|.    ....+.|.|.+
T Consensus       151 ~~v~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~  183 (184)
T 3b5h_A          151 ENLNMEADPGQYRCNGTSSKGS----DQAIITLRVRS  183 (184)
T ss_dssp             CSCCTTTSSEEEEEEEEETTEE----EEEEEEEEEC-
T ss_pred             eeccccccCceEEEEEEeCCCc----ceEEEEEEEec
Confidence            9999 99999999999999966    77778888865

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.91  E-value=1.3e-24  Score=169.16  Aligned_cols=189  Identities=17%  Similarity=0.257  Sum_probs=135.0

Q ss_pred             eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------cccccCcEEeceeEEEEeeeecCCCeeEE
Q psy15235        111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------ATELSGRLTQSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       111 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~  182 (323)
                      ...+....+.+|+++.|.|.+.+.+   .+.+.|++++..+..        ......++......|.|.+++.+|+|.|+
T Consensus         8 ~~~~~~~~v~~G~~v~L~C~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~   84 (209)
T 1nbq_A            8 HSSEPEVRIPENNPVKLSCAYSGFS---SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (209)
T ss_dssp             ECSCSBCCEETTCCCEEECEEESCS---SEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             EcCCCceEEEcCCCEEEEEEEeCCC---CcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEE
Confidence            3355556678899999999999877   789999998765311        01223444433478999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecC--
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEH--  258 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~--  258 (323)
                      |.+ .+..+.......+.|.|..+|.+. ......+.+|+.+.|.|.+ .++|.+.+.|++++..+............  
T Consensus        85 C~~-~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  163 (209)
T 1nbq_A           85 CMV-SEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS  163 (209)
T ss_dssp             EEE-EETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCC
T ss_pred             EEE-ecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccc
Confidence            999 665444445667788888777554 3334568899999999997 88999999999999887643221100000  


Q ss_pred             CCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        259 PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       259 ~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      .........|.|.++..+|.|.|+|.|.|..|.  ...+..+.|.|.
T Consensus       164 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~--~~~s~~v~l~V~  208 (209)
T 1nbq_A          164 YVLNPTTGELVFDPLSASDTGEYSCEARNGYGT--PMTSNAVRMEAV  208 (209)
T ss_dssp             CCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC--CEECCCBCCEEE
T ss_pred             eEEcCCcceEEEEeccccCCeEEEEEEeCCcCc--ccccccEEEEEe
Confidence            000114678999999999999999999999977  223555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.91  E-value=2.8e-24  Score=180.42  Aligned_cols=204  Identities=12%  Similarity=0.113  Sum_probs=147.9

Q ss_pred             CcceEEEeeccCCcc----ceeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEece
Q psy15235         90 ESGYVQSSLFIPRMN----AITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK  165 (323)
Q Consensus        90 ~G~Y~C~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~  165 (323)
                      .|.|+|...+.....    ...|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+....  ........
T Consensus       137 ~~~~~C~~~~~l~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p---~p~i~W~~~~~~~~~~~--~~~~~~~~  211 (347)
T 2ifg_A          137 EQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRG---LEQAGWILTELEQSATV--MKSGGLPS  211 (347)
T ss_dssp             GGCCCCSSSSCSSCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSS---CCCCCEEESCCCSSEEE--CCCCCSSE
T ss_pred             ccCCCCCCChHHhcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCC---CCEEEEEcCCceeeccc--ccceeccc
Confidence            588999876522111    1234444445555678899999999999988   78999999987654311  11111456


Q ss_pred             eEEEEeeeecCCCe-eEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCe
Q psy15235        166 DSITIRKTTVDDAG-QYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND  244 (323)
Q Consensus       166 ~~l~i~~~~~~d~G-~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~  244 (323)
                      ..|.|.+++.+|+| .|+|.+ .+..+  .....+.+.|..+|.+   ....+.+|+.+.|.|.+.|.|.|.+.|+++|.
T Consensus       212 ~~L~i~~v~~~D~G~~Y~C~a-~n~~g--~~~~~~~l~V~~~P~i---~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~  285 (347)
T 2ifg_A          212 LGLTLANVTSDLNRKNVTCWA-ENDVG--RAEVSVQVNVSFPASV---QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGS  285 (347)
T ss_dssp             EEEEEESCCSTTTTCCEEECC-EETTE--ECCEEECCCCBEEEEE---EECCCEESSSEEEEEEEEEESCCEEEEEETTE
T ss_pred             ceEEEeeCChHHCCCeEEEEE-EcCCC--CEEEEEEEEEcCCCee---eeccCccCceEEEEEEeeecCCCcEEEEeCCE
Confidence            78999999999999 999999 66633  3466777777777775   12235679999999999999999999999999


Q ss_pred             eeeccCCeeeeecC--CCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235        245 TYFRSQGRIKLSEH--PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       245 ~~~~~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      .+............  .......++|+|.+++.+|+|.|+|.|.|..|.    ....+.|.|.++|
T Consensus       286 ~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~----~~~~~~l~V~~~P  347 (347)
T 2ifg_A          286 VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ----ASASIMAAFMDNP  347 (347)
T ss_dssp             ECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEECSCCCC
T ss_pred             ECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCc----eeeEEEEEecCCC
Confidence            88643222111100  011224678999999999999999999999966    8888888887765

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.4e-23  Score=162.16  Aligned_cols=175  Identities=20%  Similarity=0.358  Sum_probs=127.2

Q ss_pred             CCceeEEecCCcEEEEEE-eecCCCCCC-ceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        113 EPKYKVFEYRVPFTLKCN-VTSPPPGDD-YQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~-~~~~~~~~~-~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+....+.+|+.+.|.|. +.+.+   . +.+.|++++..+..... ..+.. .....|.|.+++.+|+|.|+|.+ .+.
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p---~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~-~~~   88 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFP---DDLSYRWLLNEFPVFITMD-KRRFVSQTNGNLYIANVEASDKGNYSCFV-SSP   88 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEES---SCCEEEEEESSTTCBCCCS-SSEEECTTTCCEEESSCCGGGCEEEEEEE-EEG
T ss_pred             CCceEEEECCCCEEEeccccccCC---CceEEEEEECCceeeeeeC-CCeEEEcCCCeEEECcCCcccCeEEEEEE-Eec
Confidence            445566889999999999 77776   5 89999999877643111 12222 45678999999999999999999 554


Q ss_pred             CCCCC-CceeeeeEEE-------ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235        190 STNTT-PLAQADFDVI-------MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE  260 (323)
Q Consensus       190 ~~~~~-~~~~~~l~v~-------~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  260 (323)
                      .+... ......+.+.       .+|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+... .++..     
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~-~~~~~-----  162 (201)
T 3s97_C           89 SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST-AEIST-----  162 (201)
T ss_dssp             GGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTT-CEEET-----
T ss_pred             CCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCc-eeecC-----
Confidence            21111 1122233332       234343 333667889999999999999999999999999876532 22221     


Q ss_pred             CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                         ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|+
T Consensus       163 ---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~  200 (201)
T 3s97_C          163 ---SGAVLKIFNIQLEDEGIYECEAENIRGK----DKHQARIYVQ  200 (201)
T ss_dssp             ---TTTEEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEEE
T ss_pred             ---CCCEEEEccCChhhCEEEEEEEEecCCc----eeeeEEEEEe
Confidence               3578999999999999999999999966    7788888775

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.91  E-value=2.2e-22  Score=171.56  Aligned_cols=182  Identities=20%  Similarity=0.354  Sum_probs=139.9

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccccc-cccCcEE----eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITEAT-ELSGRLT----QSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~~~-~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      ....+.+|+.++|.|.+.+.|   .+.|.|+++  |..+.... ....++.    .....|.|.+++.+|+|.|+|.+ .
T Consensus         8 ~~~~~~~G~~v~l~C~~~g~p---~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~   83 (389)
T 2jll_A            8 KNETTYENGQVTLVCDAEGEP---IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA-A   83 (389)
T ss_dssp             CCEEEETTSEEEEEEEEECSS---CCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEE-E
T ss_pred             CceEEeCCCeEEEEEEeeccc---CCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEE-E
Confidence            334566799999999999988   789999999  87775411 1134443    24678999999999999999999 7


Q ss_pred             CCCCCCCCceeeeeEEEecceeeeecee-EEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC-CeeeeecCCCCCCcc
Q psy15235        188 PKSTNTTPLAQADFDVIMKPTAKLVETL-TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTAN  265 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~  265 (323)
                      |..+.  ....+.|.|..+|.+..+... .+.+|+.+.|.|.+.|+|.+.+.|++++..+.... .++.+..  .  ...
T Consensus        84 n~~g~--~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~--~--~~~  157 (389)
T 2jll_A           84 SRIGG--HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYS--T--GRK  157 (389)
T ss_dssp             CSSCE--EEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEE--C--SSC
T ss_pred             eCCCC--cceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEec--c--CCE
Confidence            77443  467788888888877644433 67889999999999999999999999998876443 2333331  1  135


Q ss_pred             eeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       266 ~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      ..|.|.++..+|+|.|+|.|.|..|.    ....+.|.+...|.+
T Consensus       158 ~~L~i~~~~~~d~G~Y~C~a~N~~G~----~~~~~~l~v~~~P~~  198 (389)
T 2jll_A          158 MILEIAPTSDNDFGRYNCTATNHIGT----RFQEYILALADVPSS  198 (389)
T ss_dssp             EEEEECCCSTTSSEEEEEEEEETTEE----EEEEEEEEECCCCCC
T ss_pred             EEEEECCCChhhCEEEEEEEEcCCCc----EEEEEEEEecCCCCC
Confidence            78999999999999999999999976    667777777666544

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.91  E-value=8.1e-23  Score=168.42  Aligned_cols=180  Identities=23%  Similarity=0.350  Sum_probs=129.8

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeec-CCCe
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTV-DDAG  179 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~-~d~G  179 (323)
                      .|.+...+....+.+|++++|.|.+.+.+   .+.|.|+++|..+..     .++.      .....|.|.++.. +|+|
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p---~~~i~W~k~g~~i~~-----~~~~~~~~~~~~~~~L~i~~~~~~~D~G   77 (304)
T 2yd9_A            6 PPRFIKEPKDQIGVSGGVASFVCQATGDP---KPRVTWNKKGKKVNS-----QRFETIEFDESAGAVLRIQPLRTPRDEN   77 (304)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEC-------C-----TTEEEEEETTTTEEEEEECSCCTTTTCS
T ss_pred             CCeeeecCCceEecCCCeEEEEEEEEEeC---CCeEEEEECCEECCC-----CceEEEEecCCCceEEEEecccccCCCe
Confidence            45555667777788999999999999887   689999999988754     2222      2237899999997 9999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEEec-------ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVIMK-------PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG  251 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~-------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~  251 (323)
                      .|+|.+ .+..+.  ....+.|.|..+       |.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+.....
T Consensus        78 ~Y~C~a-~n~~g~--~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~  154 (304)
T 2yd9_A           78 VYECVA-QNSVGE--ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSAS  154 (304)
T ss_dssp             EEEEEE-ECSSCE--ECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGG
T ss_pred             EEEEEE-ECCCCe--EEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCC
Confidence            999999 676433  556777777764       4444 33456688899999999999999999999999988765432


Q ss_pred             --eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        252 --RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       252 --~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                        ++...       ....|.|.+++.+|+|.|+|.|.|..|.. .+....+.|.+.
T Consensus       155 ~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~v~~~  202 (304)
T 2yd9_A          155 NGRIKQL-------RSGALQIESSEETDQGKYECVATNSAGVR-YSSPANLYVRVQ  202 (304)
T ss_dssp             TTSEEEC-------TTSCEEECSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEECC
T ss_pred             cceEEeC-------CCeEEEEccCCcccCEEEEEEEEeCCCCE-EeccEEEEEEee
Confidence              23222       24689999999999999999999998751 112245555543

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.91  E-value=2.5e-23  Score=158.56  Aligned_cols=171  Identities=18%  Similarity=0.124  Sum_probs=123.7

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.+...|.. .+.+|++++|.|.+.+ +   .+.+.|+|++....          .....|.|.+++.+|+|.|+|.+ .
T Consensus         9 P~i~~~p~~-~v~~G~~v~L~C~~~~-~---~~~~~W~k~g~~~~----------~~~~~L~i~~v~~~D~G~Y~C~a-~   72 (184)
T 2gi7_A            9 PSLQALPSS-LVPLEKPVTLRCQGPP-G---VDLYRLEKLSSSRY----------QDQAVLFIPAMKRSLAGRYRCSY-Q   72 (184)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECST-T---CSEEEEEETTTCCE----------ESSSEEEESSCCGGGCEEEEEEE-E
T ss_pred             CeEEeCCCc-cccCCCcEEEEEeCCC-C---CCEEEEEECCcccc----------CcccEEEECcCChhhCceEEEEE-E
Confidence            444445554 6789999999999887 4   57999999986621          35678999999999999999999 6


Q ss_pred             CCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCc
Q psy15235        188 PKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA  264 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  264 (323)
                      +..+....+..+.|.|..   +|.+...+...+.+|+.++|.|.+.+. ++.+.|++++..+.... .. ..       .
T Consensus        73 n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~-~~-~~-------~  142 (184)
T 2gi7_A           73 NGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKN-PE-RW-------Y  142 (184)
T ss_dssp             ETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCC-CC-EE-------E
T ss_pred             cCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCC-CcEEEEEECCCcCccee-cC-CC-------c
Confidence            654323345556677743   556665445667899999999998765 46999999998764311 11 11       3


Q ss_pred             ceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEE
Q psy15235        265 NSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRV  304 (323)
Q Consensus       265 ~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v  304 (323)
                      ...|.|.+++.+|+|.|+|.|.|..+.. ....+..+.|.|
T Consensus       143 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          143 RASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             EESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             eEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence            6789999999999999999999986531 122344555544

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.90  E-value=2e-23  Score=162.87  Aligned_cols=181  Identities=19%  Similarity=0.320  Sum_probs=129.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCC-CceEEEEEC----------------Ceeccc-cccccCcEEe-------ceeE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGD-DYQIVWYKG----------------NKSITE-ATELSGRLTQ-------SKDS  167 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~~----------------~~~~~~-~~~~~~~~~~-------~~~~  167 (323)
                      .+....+.+|++++|.|.+.+.++.. .+.+.|+++                +..+.. ...+.+++..       ....
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence            34455688899999999998865321 259999983                322221 1223444441       4678


Q ss_pred             EEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCee
Q psy15235        168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDT  245 (323)
Q Consensus       168 l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~  245 (323)
                      |.|.+++.+|+|.|+|.+ .+..  ......+.|.|..+|.+. .+....+..|+.+.|.|.+ .|.|.+.+.|++++..
T Consensus        86 L~i~~v~~~D~G~Y~C~~-~~~~--~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~  162 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKV-KKAP--GVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDS  162 (214)
T ss_dssp             EEECSCCGGGCEEEEEEE-EETT--EEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTT
T ss_pred             EEEccCChhhCeEEEEEE-EeCC--CccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCC
Confidence            999999999999999999 6653  334667778888776544 3334457889999999999 8999999999996432


Q ss_pred             eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235        246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      ...........       ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.++
T Consensus       163 ~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~V~~P  213 (214)
T 3jz7_A          163 QTMPTPWLAEM-------TSPVISVKNASSEYSGTYSCTVQNRVGS----DQCMLRLDVVPP  213 (214)
T ss_dssp             CCCCGGGGGGT-------TSSEEEECSCCGGGCEEEEEEEECSSCE----EEEEEEECCBCC
T ss_pred             CccCccceecc-------CCCEEEEecCCHHHCEEEEEEEEcCCCc----EEEEEEEEEeCC
Confidence            22111111111       3569999999999999999999999965    788888888743

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.90  E-value=1.1e-22  Score=166.38  Aligned_cols=186  Identities=25%  Similarity=0.380  Sum_probs=138.9

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEE
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .+.+.|....+.+|+.++|.|.+.+.+|  .+.+.|++ +|..+...   ..++.     .....|.|.+++.+|+|.|+
T Consensus         4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~--~~~i~W~~~~g~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (291)
T 1qz1_A            4 QVDIVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIYNANIDDAGIYK   78 (291)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEESSCCS--CCEEEEECTTSCBCCSS---CSSEEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             ceEecCCCceEeCCCeEEEEEEeCCCCC--CcEeEEECCCCeECccC---CceEEEEEcCCCeEEEEEecCCCCCCEEEE
Confidence            3455666677889999999999998764  57999999 77766531   23332     24678999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc-CCeeeeecCCC
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPE  260 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~  260 (323)
                      |.+ .+..+ ......+.|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+... ..++...    
T Consensus        79 C~~-~n~~g-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----  152 (291)
T 1qz1_A           79 CVV-TAEDG-TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL----  152 (291)
T ss_dssp             EEE-ECTTS-CEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEEC----
T ss_pred             EEE-EcCCC-CeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEc----
Confidence            999 66642 234566777777777665 344667889999999999999999999999999876532 2333333    


Q ss_pred             CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                         ....|.|.++..+|+|.|+|.|.|..+.  ......+.|.|..+|..
T Consensus       153 ---~~~~L~i~~~~~~d~G~Y~C~a~n~~~~--~~~~~~~~l~v~~~p~~  197 (291)
T 1qz1_A          153 ---SNNYLQIRGIKKTDEGTYRCEGRILARG--EINFKDIQVIVNVPPTV  197 (291)
T ss_dssp             ---TTSCEEETTCCGGGCEEEEEEEEEGGGT--EEEEEEEEEEEEEEEEE
T ss_pred             ---cCCcEEEccCccccCeEEEEEEEecCCC--ceeeEEEEEEEecCCcc
Confidence               3568999999999999999999998743  22345566666655543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.90  E-value=7e-23  Score=156.13  Aligned_cols=163  Identities=15%  Similarity=0.257  Sum_probs=124.4

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc----------cccccCcEE-------eceeEEEEeeeecCCC
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE----------ATELSGRLT-------QSKDSITIRKTTVDDA  178 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~----------~~~~~~~~~-------~~~~~l~i~~~~~~d~  178 (323)
                      ...+.+|++++|.|.+.+.+   .+.+.|++++..+..          ......++.       .....|.|.+++.+|+
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~   80 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS   80 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSS---CCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGC
T ss_pred             cEEEeCCCCEEEEEEEcCCC---ceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHC
Confidence            45578899999999998776   689999998753211          011123333       1255699999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecC
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEH  258 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~  258 (323)
                      |.|+|.+ .+..      ..+.|.|..   +..+....+.+|+.++|.|.+.+.|.+.+.|++++..+..          
T Consensus        81 G~Y~C~~-~~~~------~~~~l~V~~---~~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~----------  140 (184)
T 2ny1_B           81 DTYICEV-EDQK------EEVQLLVFG---LTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------  140 (184)
T ss_dssp             EEEEEEE-TTEE------EEEEEEEEE---EEESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE----------
T ss_pred             EEEEEEE-EcCC------CcEEEEEEE---ecCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc----------
Confidence            9999999 6651      245566553   2234456788999999999999899999999998765521          


Q ss_pred             CCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        259 PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       259 ~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                           ....|.|.+++.+|+|.|+|.|.|..|.    ....+.|.|.+.|..
T Consensus       141 -----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~----~~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          141 -----GGKTLSVSQLELQDSGTWTCTVLQNQKK----VEFKIDIVVLAFQKA  183 (184)
T ss_dssp             -----ESSEEEESSCCGGGCEEEEEEEEETTEE----EEEEEEEEEECCCC-
T ss_pred             -----CceEEEEecCCcCCCeEEEEEEEECCce----EEEEEEEEEEecCCC
Confidence                 3678999999999999999999998855    788889999887753

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.90  E-value=4.5e-23  Score=160.33  Aligned_cols=178  Identities=22%  Similarity=0.313  Sum_probs=127.1

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc---------------cccccCcEE-eceeEEEEeeeecCCC
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE---------------ATELSGRLT-QSKDSITIRKTTVDDA  178 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~---------------~~~~~~~~~-~~~~~l~i~~~~~~d~  178 (323)
                      ....+.+|++++|.|...+.+   .+.+.|++++.....               ...+.+++. ..+..|.|.+++.+|+
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~   83 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLA---LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDM   83 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSS---CSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGC
T ss_pred             ccceeecCCcEEEEEeCCCCC---ceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCC
Confidence            335577899999999977766   679999997542211               111223333 3345799999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEec---ceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeee
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIMK---PTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKL  255 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~  255 (323)
                      |.|+|.+ .+..+ ......+.|.|..+   |.+...... +.+|+.+.|.|.+.+.| +.+.|++++..+... .++.+
T Consensus        84 G~Y~C~~-~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~-~~~~~  158 (208)
T 3r4d_A           84 GVYTLDM-TDENY-RRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT-ERMTL  158 (208)
T ss_dssp             EEEEEEE-ECSSC-EEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC-SSEEE
T ss_pred             eEEEEEE-EcccC-ceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC-CCeEE
Confidence            9999999 56522 33455666777654   455444333 88899999999998865 799999999888643 34444


Q ss_pred             ecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       256 ~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      ..      ...+|.|.++..+|.|.|+|.|.|..|.   ..+..++|.|..++.
T Consensus       159 ~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~g~---~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          159 SQ------NNSILRIDPIKREDAGEYQCEISNPVSV---RRSNSIKLDIIFDPH  203 (208)
T ss_dssp             ET------TTTEEEESSCCGGGCEEEEEEEECTTCC---EECCCEEECCC----
T ss_pred             cC------CCCEEEEeccCHHhCeEEEEEEecCCCc---ccCCceeeeEEeCCc
Confidence            41      3478999999999999999999999976   355677777776654

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.90  E-value=2.2e-22  Score=176.10  Aligned_cols=248  Identities=14%  Similarity=0.240  Sum_probs=149.3

Q ss_pred             EecCCcEEEEEEec---cC-c-eEEEEEcCccceeeccCcceEEEeeeeCC----eEEEEEeecc--cCcceEEEeeccC
Q psy15235         33 IMEGAPINISCILT---IF-E-QVKWQLNGRNINQSSVDSGFAATANLTED----NFKYSIHEAI--LESGYVQSSLFIP  101 (323)
Q Consensus        33 v~~G~~v~L~C~~~---~~-~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~--~~G~Y~C~~~~~~  101 (323)
                      +.+|+.++|.|.+.   |. + .++|++++.........  .  .....++    ...|.+..+.  |+|.|+|.+.+..
T Consensus       138 ~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~--~--~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~  213 (475)
T 1iga_A          138 TQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFP--P--SQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYT  213 (475)
T ss_pred             cCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCC--c--eecCCCCcEEEEEEEEechhHcCCCceEEEEEEECC
Confidence            36899999999953   33 3 99999987543221000  0  0000111    1235555543  5899999999876


Q ss_pred             Ccc---cee------------------------eeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc
Q psy15235        102 RMN---AIT------------------------GNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE  153 (323)
Q Consensus       102 ~~~---~~~------------------------~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~  153 (323)
                      +..   .+.                        +.+.+ .+....+..|+.++|.|.+.+.+|...+.|.| + +..+..
T Consensus       214 ~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~  291 (475)
T 1iga_A          214 NPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKS  291 (475)
T ss_pred             CCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCC
Confidence            432   111                        11111 12222246899999999999876421269999 4 433322


Q ss_pred             cccc------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE---EEecceeeeece--eEEeeCCe
Q psy15235        154 ATEL------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD---VIMKPTAKLVET--LTVIEGEK  222 (323)
Q Consensus       154 ~~~~------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~---v~~~p~~~~~~~--~~~~~g~~  222 (323)
                      ....      ++.+ .....|.|.++..+|+|.|+|.+ .|..+..  .....+.   +..+|.+.+...  ..+.+|+.
T Consensus       292 ~~~~~~~~~~~g~~-~~~~~L~I~~~~~~d~G~Y~C~a-~n~~~~~--~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~  367 (475)
T 1iga_A          292 AVQGPPERDLCGCY-SVSSVLPGCAEPWNHGKTFTCTA-AYPESKT--PLTATLSKSGNTFRPEVHLLPPPSEELALNEL  367 (475)
T ss_pred             ccccCceECCCCCE-EEEEEEEEchHHhccCCcEEEEE-EcCCCCC--ceEEEeecCCCCCCCeEEEECCChHHhccCCc
Confidence            1000      1111 23457999999999999999999 6764432  2233342   245666653322  23678999


Q ss_pred             EEEEEEEecC-CC-CcEEEEECCeeeeccCCee-eeecCC--CCC--CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        223 LRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRI-KLSEHP--EKG--TANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       223 ~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~-~~~~~~--~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      +.|.|.+.|. |+ +.+.|+++|..+....... ......  .++  ...+.|.|.....+|.|.|+|.|.|...
T Consensus       368 ~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l  442 (475)
T 1iga_A          368 VTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  442 (475)
T ss_pred             eEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCC
Confidence            9999999886 43 4899999998875432000 001000  111  1346788888888899999999999873

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.90  E-value=4.6e-23  Score=164.93  Aligned_cols=187  Identities=17%  Similarity=0.243  Sum_probs=127.0

Q ss_pred             CCceeEEecCCcEEEEEEeec---CCCCCCceEEEEECCeecc----c----------------------cccccCcEE-
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTS---PPPGDDYQIVWYKGNKSIT----E----------------------ATELSGRLT-  162 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~---~~~~~~~~i~W~~~~~~~~----~----------------------~~~~~~~~~-  162 (323)
                      .+....+.+|++++|.|.+.+   .+   .+.+.|++++....    .                      ...+.+|+. 
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQ---PPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCS---CCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCC---ceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            455667889999999999987   55   68999999875431    0                      012234443 


Q ss_pred             --eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCC---ceeeeeEEEec---ceee--eeceeEEeeCCeEEEEEEEecC
Q psy15235        163 --QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTP---LAQADFDVIMK---PTAK--LVETLTVIEGEKLRLECLVVGS  232 (323)
Q Consensus       163 --~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~---~~~~~l~v~~~---p~~~--~~~~~~~~~g~~~~l~C~~~g~  232 (323)
                        .....|.|.+++.+|+|.|+|.+ .+..+....   ...+.|.|..+   |.+.  .+....+.+|+.+.|.|.+.+.
T Consensus        85 ~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~  163 (250)
T 2fbo_J           85 ANLAAPTLRLTHVHPQDGGRYWCQV-AQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDC  163 (250)
T ss_dssp             SCTTSCCEEECSCCGGGCEEEEEEE-ECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESC
T ss_pred             ccCCcceEEEeeCChhhCeEEEEEe-ccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCC
Confidence              12468999999999999999999 665332211   23666777653   3333  2334566779999999999999


Q ss_pred             CCCcEEEEECCeeeeccCCe-------------eeeecCCCCCC---cceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235        233 PPPTVEWRIGNDTYFRSQGR-------------IKLSEHPEKGT---ANSVLQIDEATMADRGNYYCHGNNVATRNSQPN  296 (323)
Q Consensus       233 p~~~~~W~~~~~~~~~~~~~-------------~~~~~~~~~~~---~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~  296 (323)
                      |.|.+.|++++..+......             ...........   ....|.|.+++.+|+|.|+|.|.|..|. .++.
T Consensus       164 p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~g~~  242 (250)
T 2fbo_J          164 ANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE-LDAD  242 (250)
T ss_dssp             TTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG-GGEE
T ss_pred             CCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc-cCcc
Confidence            99999999998776432110             00000000000   2378999999999999999999997765 2446


Q ss_pred             eeEEEEEE
Q psy15235        297 EAFVYVRV  304 (323)
Q Consensus       297 ~~~~~l~v  304 (323)
                      ...+.|.|
T Consensus       243 ~~~~~l~V  250 (250)
T 2fbo_J          243 RSSTILKV  250 (250)
T ss_dssp             EEEEEEEC
T ss_pred             ceeEEEeC
Confidence            66666654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.90  E-value=6.2e-23  Score=160.20  Aligned_cols=184  Identities=16%  Similarity=0.187  Sum_probs=123.1

Q ss_pred             CCceeEEecC--CcEEEEEEeecCCCCCCceEEEEEC---CeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        113 EPKYKVFEYR--VPFTLKCNVTSPPPGDDYQIVWYKG---NKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       113 ~~~~~~~~~g--~~v~l~C~~~~~~~~~~~~i~W~~~---~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .+....+.+|  ++++|.|.+.+ +   .+.+.|+++   +..+..    ..++. .....|.|.+++.+|+|.|+|.+ 
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p---~~~v~w~~~~~~g~~~~~----~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a-   83 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-S---NLNVSLCARYPEKRFVPD----GNRISWDSKKGFTIPSYMISYAGMVFCEA-   83 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-T---TCCEEEEEETTTEEECCC----SSSCEEETTTEEEEEGGGTTTCSEEEEEE-
T ss_pred             CceEEEEecCCCccEEEeeccCC-C---CcEEEEEhhcCCCccccC----CCcccccCCccEEEccCChhcCceEEEEE-
Confidence            3456668889  99999999976 5   578999884   655554    33333 44567999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEe--cceeee-ec-eeEEeeCCeEEEEEEEecCCC--CcEEEEECCeeeeccCCeeeeecCCC
Q psy15235        187 DPKSTNTTPLAQADFDVIM--KPTAKL-VE-TLTVIEGEKLRLECLVVGSPP--PTVEWRIGNDTYFRSQGRIKLSEHPE  260 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~--~p~~~~-~~-~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~  260 (323)
                      .+.. ....+..+.|.|..  +|.+.. +. ...+.+|++++|.|.+.|.|.  +.+.|++++..+..............
T Consensus        84 ~n~~-~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~  162 (213)
T 2x1w_L           84 KIND-ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS  162 (213)
T ss_dssp             C-----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCS
T ss_pred             EECC-eeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEecccccccc
Confidence            6642 22233335566643  333332 22 337899999999999998653  47999999876432111000000000


Q ss_pred             C---CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        261 K---GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       261 ~---~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      .   ....++|+|.+++.+|+|.|+|.|.|..|.    ....+.|.|.++|..
T Consensus       163 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~----~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          163 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT----KKNSTFVRVHEDPIE  211 (213)
T ss_dssp             SCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCE----EEEEEEEEEEC----
T ss_pred             CccceeeeEEEEECCCCcccCEEEEEEEecCCCc----EEEEEEEEEeccccc
Confidence            0   113568999999999999999999999965    788999999887753

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.90  E-value=2.5e-22  Score=155.18  Aligned_cols=182  Identities=10%  Similarity=0.095  Sum_probs=123.7

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECC-eeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN-KSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTP  195 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  195 (323)
                      ..+.+|+.++|.|.+.|.|   .+.|.|+++. ..+..    ..........|.|.+++.+|+|.|.|.+ .|..  ...
T Consensus        11 ~~~~~G~~v~L~C~~~g~P---~p~i~W~~~~~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~--~~~   80 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCE---SPFFSWRTQIDSPLNG----KVTNEGTTSTLTMNPVSFGNEHSYLCTA-TCES--RKL   80 (202)
T ss_dssp             EEEETTSCEEEEEEEESCS---SCEEEEEETTCCCCSS----EEEEETTEEEEEESSCCGGGCSEEEEEE-EETT--EEE
T ss_pred             EEEcCCCcEEEEEeecCCC---CCeEEEECCCCCCccc----eEEEcCCccEEEECcCCHHHCEEEEEEE-EECC--ceE
Confidence            3455899999999999887   6889999843 22211    0111134567999999999999999999 6663  334


Q ss_pred             ceeeeeEEEecce-eeeeceeEEeeCCeEEEEEEEecCCC---CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEe
Q psy15235        196 LAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVVGSPP---PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       196 ~~~~~l~v~~~p~-~~~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      ...+.|.|..+|. +.+.....+.+|+.++|.|.+.|.++   +.+.|++++..+.......... .........+|+|.
T Consensus        81 ~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~-~~~~~~~~~~l~i~  159 (202)
T 1vca_A           81 EKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDAD-RKSLETKSLEVTFT  159 (202)
T ss_dssp             EEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCS-SCCCEEEEEEEEEC
T ss_pred             eeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccC-cCcceEEEEEEEEE
Confidence            5677888877653 33333466889999999999987643   3699999998875321100000 00001134667889


Q ss_pred             ecCcCCCeEEEEEEeecccCCC---CCceeEEEEEEcceec
Q psy15235        272 EATMADRGNYYCHGNNVATRNS---QPNEAFVYVRVKGKSF  309 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~n~~g~~~---~~~~~~~~l~v~~~~~  309 (323)
                      .+..+|.|.|+|.|.|..|...   ...+..+.|.|..+|.
T Consensus       160 ~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          160 PVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             CCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             eeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            8998999999999999986511   1245678888877664

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.90  E-value=1.6e-21  Score=171.88  Aligned_cols=264  Identities=14%  Similarity=0.225  Sum_probs=154.3

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc----C--ceEEEEEc--Ccccee----ec---------cCcceEEEeeeeCCeEEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI----F--EQVKWQLN--GRNINQ----SS---------VDSGFAATANLTEDNFKY   82 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~----~--~~v~W~~~--g~~~~~----~~---------~~~~~~~~~~~~~~~~~l   82 (323)
                      .+..+..+.+.+|++|+|.|.+.+    .  ..+.|+|+  |+.+..    ..         ...+..+..+...+.+.|
T Consensus         3 ~l~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   82 (512)
T 1zvo_C            3 QLQESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSL   82 (512)
T ss_pred             EEECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEE
Confidence            456677888999999999999542    2  67999995  332211    00         111222222223456788


Q ss_pred             EEeecc--cCcceEEEeeccCC-----------c----c--ceeeeeee--CCceeE-------EecCCcEEEEEEeecC
Q psy15235         83 SIHEAI--LESGYVQSSLFIPR-----------M----N--AITGNYDI--EPKYKV-------FEYRVPFTLKCNVTSP  134 (323)
Q Consensus        83 ~i~~~~--~~G~Y~C~~~~~~~-----------~----~--~~~~~~~~--~~~~~~-------~~~g~~v~l~C~~~~~  134 (323)
                      .|.+++  |+|.|+|.+.+..+           .    .  .+.+....  .|.+..       ...++.++|.|.+.+.
T Consensus        83 ~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~  162 (512)
T 1zvo_C           83 NLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGY  162 (512)
T ss_pred             EECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEee
Confidence            888877  49999999986531           0    1  11111000  122211       1135789999999997


Q ss_pred             CCCCCceEEEEECCeecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce---------eee
Q psy15235        135 PPGDDYQIVWYKGNKSITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA---------QAD  200 (323)
Q Consensus       135 ~~~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~---------~~~  200 (323)
                      .|. ...|.|++++......     ...++.+ .....|.|.....+ .|.|+|.+ .|..+......         ...
T Consensus       163 ~P~-p~~v~W~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~-~g~ytC~v-~n~~~~~~~~~~~~~~~~~~~~~  238 (512)
T 1zvo_C          163 HPT-SVTVTWYMGTQSQPQRTFPEIQRRDSYY-MTSSQLSTPLQQWR-QGEYKCVV-QHTASKSKKEIFRWPESPKAQAS  238 (512)
T ss_pred             ecC-ceEEEEEcCcccCceEecCceecCCCCE-EEEEEEEEcHHHcC-CceEEEEE-EeCCCCceEEEecCCCCCCcCCE
Confidence            542 2499999975432110     0001112 22345788777666 89999999 67644322222         112


Q ss_pred             eEEEec----------------------------------------------------ceeee-e-ceeEEeeCCeEEEE
Q psy15235        201 FDVIMK----------------------------------------------------PTAKL-V-ETLTVIEGEKLRLE  226 (323)
Q Consensus       201 l~v~~~----------------------------------------------------p~~~~-~-~~~~~~~g~~~~l~  226 (323)
                      +.+..+                                                    |.+.+ + ....+.+|+.++|.
T Consensus       239 v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~  318 (512)
T 1zvo_C          239 SVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFT  318 (512)
T ss_pred             EEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEE
Confidence            333322                                                    22221 1 12235579999999


Q ss_pred             EEEecCCC--CcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        227 CLVVGSPP--PTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       227 C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      |.+.|.++  ..++|+++|..+.............++ ....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus       319 C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~  386 (512)
T 1zvo_C          319 CFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLP  386 (512)
T ss_pred             EEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence            99988633  389999999875411100000000111 123467999999999999999999998865

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.90  E-value=5.6e-22  Score=156.23  Aligned_cols=182  Identities=14%  Similarity=0.220  Sum_probs=116.7

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecc-----------c--cccccCcEE-------eceeEEEEee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT-----------E--ATELSGRLT-------QSKDSITIRK  172 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~-----------~--~~~~~~~~~-------~~~~~l~i~~  172 (323)
                      +++...+.+|++++|.|.+.+.++.....|.|+|++....           .  ...+..|..       .....|.|.+
T Consensus        10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   89 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN   89 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence            3344668899999999999875532235899999764221           1  111222322       3467899999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEec-CCCCcEEEEECCeeeeccC
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQ  250 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~  250 (323)
                      ++.+|+|.|+|.+ .|..    ......+.+...+... ......+.+|+.+.|.|.+.| .|.|.+.|++++..+....
T Consensus        90 v~~~D~G~Y~C~a-~n~~----~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~  164 (226)
T 4f80_A           90 VTASDSGKYLCYF-QDGD----FYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTV  164 (226)
T ss_dssp             CCGGGCEEEEEEE-EETT----EEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCE
T ss_pred             CchHHCeeEEEEE-ECCC----cEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCC
Confidence            9999999999999 6652    2334445554433222 333566788999999999987 5999999999765443222


Q ss_pred             CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ......  ..++ ....+.+..++.+|+|+|+|.|.|..|.    .+..+.|.|.+
T Consensus       165 ~~~~~~--~~~g-~~~v~s~l~v~~~d~G~YtC~a~N~~g~----~~~~~~v~v~e  213 (226)
T 4f80_A          165 EAPVVA--DGVG-LYAVAASVIMRGSSGEGVSCTIRSSLLG----LEKTASISIAD  213 (226)
T ss_dssp             ECCCEE--CTTS-CEEEEEEEEECC----CEEEEEEETTTT----EEEEEEECCCT
T ss_pred             ceEEEE--CCCC-cEEEEEEEEechhcCcEEEEEEEeCCCC----eEEEEEEEECC
Confidence            211111  1111 1234556678889999999999999965    77888888765

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.90  E-value=3.2e-22  Score=161.15  Aligned_cols=165  Identities=21%  Similarity=0.290  Sum_probs=134.1

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      |.+.+.|....+.+|+.++|.|.+.+.+   .+ .+.|+++|..+..          ....|.|.+++.+|+|.|+|.+ 
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~---~~~~~~W~~~g~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~-   67 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLP---GSSSTQWFLNGTATQT----------STPSYRITSASVNDSGEYRCQR-   67 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCC---CTTCEEEEETTEECSC----------CSSEEEESSCCGGGCEEEEEEE-
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCC---CCceEEEEECCEEeec----------cCCeEEEecCCcccCeEEEEEE-
Confidence            4555666666788999999999998887   45 9999999998865          3567999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcc
Q psy15235        187 DPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTAN  265 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (323)
                      .+.    ..+..+.+.|..++....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....             ..
T Consensus        68 ~~~----~~s~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~-------------~~  130 (262)
T 3rjd_A           68 GLS----GRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-------------WN  130 (262)
T ss_dssp             SSS----CCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------------EC
T ss_pred             ecC----CccccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC-------------CC
Confidence            665    244567788877776656666778899999999999 778888999999998875221             25


Q ss_pred             eeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235        266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       266 ~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      ..|.|.+++.+|.|.|+|.|.|..+.    ....+.|.|.+.
T Consensus       131 ~~l~i~~~~~~d~G~Y~C~~~n~~~~----~~~~~~l~V~~~  168 (262)
T 3rjd_A          131 SNLTILKTNISHNGTYHCSGMGKHRY----TSAGISVTVKEL  168 (262)
T ss_dssp             CCEEESSCCGGGCEEEEEEEESSSEE----EEECEEEEEECS
T ss_pred             CeEEEEECChhhCEEEEEEEeCCCCc----cccceEEEeccC
Confidence            77999999999999999999999855    666777777653

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=5.9e-22  Score=157.18  Aligned_cols=185  Identities=18%  Similarity=0.145  Sum_probs=128.8

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .|.+...|.. .+.+|++|+|.|.+.+.    ...+.|+|++..+.... ...........|.|.+++.+|+|.|+|.+ 
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~~----~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-   79 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNYG----AVEYQLHFEGSLFAVDR-PKPPERINKVKFYIPDMNSRMAGQYSCIY-   79 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT----CCEEEEEETTEEEEEEC-CSSCTTCCEEEEEECSCCGGGCEEEEEEE-
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCCC----CcEEEEEECCCcccccc-ccccCCcceeEEEecCCCcccCeEEEEEE-
Confidence            3445555554 67889999999998653    36899999998764200 00001135678999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235        187 DPKSTNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT  263 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
                      .+..+....+..+.|.|..   +|.+...+...+.+|+.++|.|.+.+. .+.+.|+++|..+..   .....      .
T Consensus        80 ~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~---~~~~~------~  149 (242)
T 1p6f_A           80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV---QRGYG------K  149 (242)
T ss_dssp             EETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE---EEEEC------S
T ss_pred             ecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc---cccCC------C
Confidence            5543233345566777764   566665556678899999999999754 468999999976542   11111      1


Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      ....|.|.+++.+|+|.|+|.|.|.... ....+..+.|.|.+.+.
T Consensus       150 ~~~~l~I~~v~~~d~G~Y~C~a~n~~~~-~s~~S~~~~l~V~~~~~  194 (242)
T 1p6f_A          150 VQAEFPLGPVTTAHRGTYRCFGSYNNHA-WSFPSEPVKLLVTGDIE  194 (242)
T ss_dssp             SEEEEEEEECCGGGCEEEEEEEEEETTE-ECCCCCCEEEEEEC---
T ss_pred             ceEEEEeCCCccccCEEEEEEEECCCCc-ccCCCCCEEEEEeccCC
Confidence            3688999999999999999999987411 12356677788877543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.89  E-value=5.3e-22  Score=162.42  Aligned_cols=185  Identities=24%  Similarity=0.361  Sum_probs=136.3

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE-CCeeccccccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK-GNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y  181 (323)
                      .+.+.+.+....+.+|+.++|.|.+.+.+   . .+.|++ +|..+..    ..++.    .....|.|.+++.+|+|.|
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p---~-~v~W~~~~g~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   75 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTAIGEP---E-SIDWYNPQGEKIIS----TQRVVVQKEGVRSRLTIYNANIEDAGIY   75 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEEESCC---S-EEECBCTTCCBCCC----BTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CceEEEeccceEecCCCcEEEEEEEeCCC---C-ceEEECCCCcCccC----CCcEEEecCCCEEEEEEccCCcccCEEE
Confidence            35566677777889999999999999876   4 899999 6766655    44443    3356899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec-cCCeeeeecCC
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR-SQGRIKLSEHP  259 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~-~~~~~~~~~~~  259 (323)
                      +|.+ .+..+. .....+.+.|..+|.+. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ...++...   
T Consensus        76 ~C~~-~n~~g~-~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---  150 (291)
T 2wim_A           76 RCQA-TDAKGQ-TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML---  150 (291)
T ss_dssp             EEEE-ECSSSC-EEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEEC---
T ss_pred             EEEE-ecccCc-eEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEc---
Confidence            9999 665332 22456677777766554 44456788999999999999999999999999987754 23444444   


Q ss_pred             CCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        260 EKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       260 ~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                          ....|.|.++..+|.|.|+|.|.|..+.  ......+.|.|..+|..
T Consensus       151 ----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~~~~~~~~~v~~~p~~  195 (291)
T 2wim_A          151 ----ANNNLQILNINKSDEGIYRCEGRVEARG--EIDFRDIIVIVNVPPAI  195 (291)
T ss_dssp             ----TTSCEEETTCCGGGCEEEEEEEEETTTT--EEEEEEEEEEEEBCCCC
T ss_pred             ----cCCCEEEEecchhhCEEEEEEEEECCCC--eeEEeeEEEEeccCCcc
Confidence                3567999999999999999999998744  22345566667665544

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.89  E-value=1.7e-22  Score=157.95  Aligned_cols=185  Identities=17%  Similarity=0.259  Sum_probs=122.5

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------------cccccCcEE-------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------------ATELSGRLT-------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------------~~~~~~~~~-------~~~~~l~i~~  172 (323)
                      |....+..|++++|.|.+.+.++.....|.|+|++..+..              ...+..++.       ....+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            4556678899999999998876321236899997754322              111223332       2346799999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc--eeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ  250 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p--~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~  250 (323)
                      ++.+|+|.|.|.+ .+..+. .......+.+..++  .........+..|+.+.+.|.+.|.|+|.+.|++++..+....
T Consensus        86 v~~~D~G~Y~C~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~  163 (218)
T 4frw_A           86 AVQADEGEYECRV-STFPAG-SFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR  163 (218)
T ss_dssp             CCGGGCEEEEEEE-EEETTE-EEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred             ccHHHCCceeEEE-EeccCc-eeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCc
Confidence            9999999999999 443211 12223333333333  2223334556779999999999999999999999988765322


Q ss_pred             CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      . ...   .......+.|+|.++..+|.|.|+|.|.|..|.  .....++.|.|..
T Consensus       164 ~-~~~---~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~--~~~~~t~~v~V~~  213 (218)
T 4frw_A          164 S-FKH---SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLL--QDQRITHILHVSH  213 (218)
T ss_dssp             E-EEC---SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCS--SCEEEEEECCEEC
T ss_pred             e-Eec---CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCC--eEEEEEEEEEECc
Confidence            1 111   111123578999999999999999999999976  3344555555543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.89  E-value=3e-21  Score=151.53  Aligned_cols=190  Identities=14%  Similarity=0.198  Sum_probs=121.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCC--CCceEEEEECCeeccc-----------cccccCcEE-------eceeEEEEee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGNKSITE-----------ATELSGRLT-------QSKDSITIRK  172 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~~~~~~-----------~~~~~~~~~-------~~~~~l~i~~  172 (323)
                      .+....+..|++++|.|.+.+.++.  ....+.|++++..+..           ...+.++..       .....|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            4455568899999999998765421  1348999997643321           011223433       1346899999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEEC-CeeeeccC
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIG-NDTYFRSQ  250 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~  250 (323)
                      ++.+|+|.|+|.+ .+.   ......+.|.|..++... ......+.+|+.+.|.|.+.|+|.|.+.|+++ +..+. ..
T Consensus        87 v~~~D~G~Y~C~~-~~~---~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~-~~  161 (222)
T 3sbw_C           87 VKLQDAGVYRCMI-SYG---GADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS-GK  161 (222)
T ss_dssp             CCGGGCEEEEEEE-ESS---SEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC-CE
T ss_pred             cccccCeEEEEEE-EeC---CCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec-Cc
Confidence            9999999999999 662   124456677777655332 22123567899999999999999999999998 44443 22


Q ss_pred             CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235        251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDR  313 (323)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~  313 (323)
                      ....... ...+ ......+..+..+|.|.|+|.|.|..|.    ....+.|.|.+.|....+
T Consensus       162 ~~~~~~~-~~~~-~~~~~~~l~v~~~d~g~Y~C~a~n~~g~----~~~~~~l~v~~~p~~~~p  218 (222)
T 3sbw_C          162 TTTTNSK-REEK-LFNVTSTLRINTTTNEIFYCTFRRLDPE----ENHTAELVIPELPLAHPP  218 (222)
T ss_dssp             EEEEECC------CEEEEEEEEEECCTTCEEEEEEEETTTT----EEEEEEEECCCC------
T ss_pred             cceEEEc-CCCC-CEEEEEEEEEeccCCcEEEEEEEeCccc----eeeEEEEEecCCcccCCC
Confidence            2221111 1011 1122223345678999999999999965    888999999887765543

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.89  E-value=1e-22  Score=170.46  Aligned_cols=191  Identities=15%  Similarity=0.184  Sum_probs=143.9

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEee-------cCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCC
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVT-------SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDA  178 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~-------~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  178 (323)
                      ..|.+...+....+.+|+.+.|.|.+.       +.+   .+.|.|++++..+........++......|.|.+++.+|+
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~   93 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSP---RINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDS   93 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSS---CCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCC
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCC---CceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccC
Confidence            345666677778899999999999997       666   6899999999874332222345545566899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEecceee---eeceeEEeeCCeEEEEEE-----EecCCCCcEEEEECCeeeeccC
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK---LVETLTVIEGEKLRLECL-----VVGSPPPTVEWRIGNDTYFRSQ  250 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~~~g~~~~l~C~-----~~g~p~~~~~W~~~~~~~~~~~  250 (323)
                      |.|+|.+ .+..  ......+.|.|..++...   ......+.+|+.+.|.|.     +.|.|.+.+.|++++..+....
T Consensus        94 G~Y~C~~-~n~~--g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~  170 (339)
T 3o4o_C           94 GTYVCTT-RNAS--YCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN  170 (339)
T ss_dssp             EEEECCE-EETT--EEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTC
T ss_pred             EEEEEEE-ECCc--ceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCC
Confidence            9999999 6653  345566677777654321   222346789999999999     7888999999999999887655


Q ss_pred             CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235        251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      .++....      ....|.|.++..+|.|.|+|.|.|..|.........+.|.|.+.+
T Consensus       171 ~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~  222 (339)
T 3o4o_C          171 EKFLSVR------GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK  222 (339)
T ss_dssp             SSEEECT------TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC
T ss_pred             ceeEEcC------CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC
Confidence            5555541      235899999999999999999999886532346677888887543

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.89  E-value=4e-22  Score=159.96  Aligned_cols=205  Identities=13%  Similarity=0.162  Sum_probs=116.5

Q ss_pred             eecccCcceEEEeeccCCccc-----eeeeeeeCCceeEEecCCcEEEEEEeecCCCC--CCceEEEEECC--eecc---
Q psy15235         85 HEAILESGYVQSSLFIPRMNA-----ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGN--KSIT---  152 (323)
Q Consensus        85 ~~~~~~G~Y~C~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~--~~~~---  152 (323)
                      .+..|+|.|+|.+........     ..+.+...|....+.+|++++|.|.+.+.++.  ..+.+.|+|++  ..+.   
T Consensus        11 v~~~dsg~Y~C~a~g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~   90 (254)
T 2c1o_A           11 VRPGTSVKLSCKASGYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLI   90 (254)
T ss_dssp             ---------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEE
T ss_pred             ecCCccEEEEEcCchhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEE
Confidence            345579999999972211111     01222224566678899999999999887631  02789999843  2221   


Q ss_pred             -----ccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe---cceeee-eceeEEee
Q psy15235        153 -----EATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKL-VETLTVIE  219 (323)
Q Consensus       153 -----~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~-~~~~~~~~  219 (323)
                           .......++.    .....|.|.+++.+|+|.|+|.+ .+..+.. ......+.|..   +|.+.. +.......
T Consensus        91 ~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~~~~-~~~~~~l~V~~~~~~P~v~~~~~~~~~~~  168 (254)
T 2c1o_A           91 YLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQ-GSHFPPT-FGAGTKLELKRADAAPTVSIFPPSSEQLT  168 (254)
T ss_dssp             ETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE-CSSSSCE-EBCCEEEEECCCCBCCEEEEECCCHHHHH
T ss_pred             EeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEE-EcCcceE-ecCCEEEEECCCCCCCeeEeecCChhhcc
Confidence                 0111234554    24558999999999999999999 6653211 11223455543   455543 22222346


Q ss_pred             CCeEEEEEEEecC-CC-CcEEEEECCeeeecc-CCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        220 GEKLRLECLVVGS-PP-PTVEWRIGNDTYFRS-QGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       220 g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      |+.++|.|.+.|. |+ +.+.|+++|..+... ..+.......++. ...+.|.|.++..+|+|.|+|.|.|....
T Consensus       169 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          169 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence            8899999999874 44 469999999887543 1111111101110 13578999999999999999999998843

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.89  E-value=1.1e-22  Score=153.56  Aligned_cols=161  Identities=14%  Similarity=0.167  Sum_probs=111.7

Q ss_pred             eEEecCCcEEEEEEeec-CCCCCCceEEEEECCeeccc------cccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        117 KVFEYRVPFTLKCNVTS-PPPGDDYQIVWYKGNKSITE------ATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~-~~~~~~~~i~W~~~~~~~~~------~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      ..+.+|++++|.|.... ..+  .+.|.|+|++..+..      .....+++. ..+..|.|.+++.+|+|.|+|.+ .+
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~--~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~-~n   82 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDD--IDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTV-YS   82 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTT--EEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEE-EE
T ss_pred             EEEEcCCcEEEcCCCCCcccc--cccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEE-Ee
Confidence            34678999999995333 222  579999999875531      011144554 34456999999999999999999 66


Q ss_pred             CCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeE
Q psy15235        189 KSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL  268 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  268 (323)
                      ..+.......+.|.|..++..    ......+..+.|.|.+.|.|+|.+.|++++..+...                ..+
T Consensus        83 ~~g~~~~~~~~~l~V~~~~~~----p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~----------------~~~  142 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMVSK----PMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL----------------RQK  142 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCCCC----CEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEE----------------SSS
T ss_pred             CCCCEEEEEEEEEEEeCCCCC----CEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCC----------------CcE
Confidence            643322345566666653210    111223556999999999999999999999887532                124


Q ss_pred             EEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        269 QIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       269 ~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      .|.++..+|+|.|+|.|.|..|.    ....+.|.+
T Consensus       143 ~i~~~~~~d~G~Y~C~a~N~~g~----~~~~~~l~~  174 (176)
T 1hng_A          143 TMSYQWTNLRAPFKCKAVNRVSQ----ESEMEVVNC  174 (176)
T ss_dssp             EEEEECSCCSSCEEEEEEETTEE----EEEEECCCC
T ss_pred             EEEEEEccCCeEEEEEEEecCCC----ceecccccC
Confidence            55578899999999999999966    566655544

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.89  E-value=2.1e-22  Score=158.18  Aligned_cols=191  Identities=18%  Similarity=0.314  Sum_probs=122.8

Q ss_pred             eEEecCCcEEEEEEeecCCC--CCCceEEEEECCeeccc---------cccccCcEE-------eceeEEEEeeeecCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPP--GDDYQIVWYKGNKSITE---------ATELSGRLT-------QSKDSITIRKTTVDDA  178 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~--~~~~~i~W~~~~~~~~~---------~~~~~~~~~-------~~~~~l~i~~~~~~d~  178 (323)
                      ..+.+|++++|.|.+.+.++  ...+.+.|++++.....         ...+.+++.       .....|.|.+++.+|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            44678999999999887642  11479999997643311         011234443       1267899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEec---ceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeee
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIMK---PTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIK  254 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~  254 (323)
                      |.|+|.+ .+..   .....+.|.|..+   |.+.......+.+|+.+.|.|.+ .+.|.+.+.|++++...........
T Consensus        85 G~Y~C~~-~~~~---~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~  160 (222)
T 4i0k_A           85 GSYTCFV-SIQD---FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS  160 (222)
T ss_dssp             SCEEEEE-EECC---CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEE
T ss_pred             EEEEEEE-EeCC---CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCccee
Confidence            9999999 5432   2344556666553   56665555667889999999999 8899999999994433222211111


Q ss_pred             eecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcChhhhh
Q psy15235        255 LSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDRVEAI  317 (323)
Q Consensus       255 ~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~~~~~  317 (323)
                      ..  .........|.|.++..+|.|.|+|.|.|..|.    ....+.|.|.++|..+.+...+
T Consensus       161 ~~--~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~p~~~~~~~~~  217 (222)
T 4i0k_A          161 QM--ANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQ----QDAHGSVTITGQPLTFPPETGH  217 (222)
T ss_dssp             EE--ECTTSCEEEEEEEEEECCTTCEEEEEEEETTTT----EEEEEEEECCC-----------
T ss_pred             EE--cCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCC----CceEEEEEEeCCccccCCccCc
Confidence            11  111112456899999999999999999999965    8899999999998777655443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.88  E-value=1.4e-22  Score=156.86  Aligned_cols=156  Identities=18%  Similarity=0.317  Sum_probs=110.9

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ  198 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  198 (323)
                      +.+|++++|.|.+   +   .+.|.|+|+|..+..    .   ......|.|.+++.+|+|.|+|.+ .+.     .+..
T Consensus        15 ~~~G~~v~L~C~~---p---~~~i~W~k~g~~l~~----~---~~~~~~L~i~~v~~~DsG~Y~C~~-~~~-----~s~~   75 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---E---AKNITWFKDGKMIGF----L---TEDKKKWNLGSNAKDPRGMYQCKG-SQN-----KSKP   75 (204)
T ss_dssp             CCSSSEEEEEECS---C---SSEEEEEETTEEEEE----E---ESSCCCEEEEEGGGCCEEEEEEES-SSS-----CCCC
T ss_pred             ecCCCeEEEEEcC---C---CCEEEEEECCEECCC----C---CCCCCeEEeCCCCcCCCEEEEEEe-cCC-----CCee
Confidence            4679999999998   4   579999999988764    1   123567999999999999999997 543     2223


Q ss_pred             eeeEEEe-------------------------------cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeee
Q psy15235        199 ADFDVIM-------------------------------KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYF  247 (323)
Q Consensus       199 ~~l~v~~-------------------------------~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~  247 (323)
                      +.+.+..                               ++.+...+.....+|++++|.|.  +.|.|.+.|++++..+.
T Consensus        76 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~  153 (204)
T 1sy6_A           76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIG  153 (204)
T ss_dssp             EEEEEEC------------------------------------CCCCEEEEETTEEEEECS--CCCSSCEEEEETTEEES
T ss_pred             EEEEEEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCCCCceEEEECCEECC
Confidence            4444430                               11122122222338999999998  78889999999998875


Q ss_pred             ccCC-eeeeecCCCCCCcceeEEEeec-CcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        248 RSQG-RIKLSEHPEKGTANSVLQIDEA-TMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       248 ~~~~-~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      .... +....       ....|+|.++ +.+|+|.|+|.|.|..|.   ..+..++|.|.
T Consensus       154 ~~~~~~~~~~-------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~---~~s~~l~l~~~  203 (204)
T 1sy6_A          154 GDEDDKNIGS-------DEDHLSLKEFSELEQSGYYVCYPRGSKPE---DANFYLYLRAR  203 (204)
T ss_dssp             CCTTCTTEEE-------ETTEEEETTCCHHHHCEEEEEEETTSCGG---GSSCEEEEEEC
T ss_pred             CccCCceEec-------CCCEEEEeeCCccccCEEEEEEeccCCCC---ceeEEEEEEEe
Confidence            4321 11111       2678999999 999999999999999975   24567776654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.88  E-value=1e-22  Score=155.38  Aligned_cols=146  Identities=16%  Similarity=0.316  Sum_probs=108.0

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEee-eecCCCeeEEEEEEcCCCCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK-TTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~  192 (323)
                      ++..+...|++++|.|.+.+ +   . .|.|+|+|..+..         ..+..|.|.+ +..+|+|.|+|.+ .|..+.
T Consensus         6 ~~~~v~~~G~~v~L~C~~~~-~---~-~i~W~k~g~~l~~---------~~~~~L~I~~~~~~~D~G~Y~C~a-~n~~g~   70 (186)
T 1jbj_A            6 IEYKVSISGTSVELTCPLDS-D---E-NLKWEKNGQELPQ---------KHDKHLVLQDFSEVEDSGYYVCYT-PASNKN   70 (186)
T ss_dssp             CCCEEEEETTEEEEECSSCC-C---T-TCEEEETTEEECS---------CCCSEEEEESCCTTTSCEEEEEEC-SSCCCC
T ss_pred             eEEEEEeCCcEEEEEEeCCC-C---C-ceEEEECCEECCC---------CCCCEEEECCCCccccCEEEEEEE-EeCCCc
Confidence            34455678999999999987 4   2 3999999998876         2456899999 9999999999999 777444


Q ss_pred             CCCceeeeeEEEe--ccee----------------e---ee--ce---eEEeeCCeEEEEEEEecCCCCcEEEEECCeee
Q psy15235        193 TTPLAQADFDVIM--KPTA----------------K---LV--ET---LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY  246 (323)
Q Consensus       193 ~~~~~~~~l~v~~--~p~~----------------~---~~--~~---~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~  246 (323)
                        ....+.+.|..  ++..                .   ..  ..   ..+.+|+++.|.|.+   |.|.+.|+++|..+
T Consensus        71 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i  145 (186)
T 1jbj_A           71 --TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSII  145 (186)
T ss_dssp             --CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEEC
T ss_pred             --EEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEEC
Confidence              33333333322  2210                0   00  00   123489999999998   78999999999987


Q ss_pred             eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .....            ....|.|.++..+|+|.|+|.|.|..|.
T Consensus       146 ~~~~~------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          146 SPLNA------------TKNTWNLGNNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             CCSSC------------CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred             cccCC------------CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence            53211            3678999999999999999999999965

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.88  E-value=3.9e-21  Score=148.55  Aligned_cols=168  Identities=20%  Similarity=0.207  Sum_probs=115.4

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      |.+...|. ..+.+|++++|.|.+.+ +   .+.+.|+|+|..+..... ..+..  .....|.|.+++.+|+|.|+|.+
T Consensus         9 P~i~~~p~-~~v~~G~~v~L~C~~~~-~---~~~~~w~k~g~~~~~~~~-~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a   82 (201)
T 1nkr_A            9 PSLLAHPG-PLVKSEETVILQCWSDV-M---FEHFLLHREGMFNDTLRL-IGEHHDGVSKANFSISRMTQDLAGTYRCYG   82 (201)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEESS-C---CSEEEEEEESSSCEEEEE-ECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CeEEEEcC-CccCCCCcEEEEEeccC-C---CCEEEEEECCCcCCccee-eeecCCCCceEEEEeccCCcccCeEEEEeE
Confidence            33444444 45778999999999974 4   579999999876543000 01111  34678999999999999999999


Q ss_pred             EcCCCC---CCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCC
Q psy15235        186 IDPKST---NTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP  259 (323)
Q Consensus       186 ~~~~~~---~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~  259 (323)
                       .+...   ....+..+.|.|..   +|.+...+...+.+|+.++|.|.+.+ +.+.+.|+++|..+..........   
T Consensus        83 -~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~---  157 (201)
T 1nkr_A           83 -SVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKV---  157 (201)
T ss_dssp             -EBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEE---
T ss_pred             -ecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCC-CCceEEEEECCcccCccccccccc---
Confidence             44321   12334556677764   46666544567889999999999975 567899999997654221111111   


Q ss_pred             CCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        260 EKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       260 ~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                       .+.....|+|.+++  |+|.|+|.|.+..
T Consensus       158 -~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          158 -NGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             -TTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             -CCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence             01126789999998  9999999999753

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.88  E-value=8.8e-22  Score=152.59  Aligned_cols=152  Identities=16%  Similarity=0.159  Sum_probs=110.5

Q ss_pred             EeeceEEecCCcEEEEEEe---ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccC
Q psy15235         27 YFGDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIP  101 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~  101 (323)
                      .+....+.+|+.+.|.|..   .|.+.++|++||.++...   ....+..+...+...|.|.+++.  +|.|+|.+.+..
T Consensus         8 ~~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~---~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~   84 (207)
T 3rbs_A            8 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK   84 (207)
T ss_dssp             EEEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSS---SSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETT
T ss_pred             cCCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccC---CCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCC
Confidence            3445789999999999993   578999999999988664   12233333334667788887754  999999887732


Q ss_pred             Cccce---------------------------eeeeeeCCceeEEecCCcEEEEEEeecC-CCCCCceEEEEECCeeccc
Q psy15235        102 RMNAI---------------------------TGNYDIEPKYKVFEYRVPFTLKCNVTSP-PPGDDYQIVWYKGNKSITE  153 (323)
Q Consensus       102 ~~~~~---------------------------~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~~~~i~W~~~~~~~~~  153 (323)
                      .....                           .|.+.... ...+.+|+.+.|.|.+.+. |   .+.|+|+|+|.++..
T Consensus        85 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P---~p~i~W~k~g~~l~~  160 (207)
T 3rbs_A           85 ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKK---ETHIVWYKDEREISV  160 (207)
T ss_dssp             EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCT---TCEEEEEETTEEECC
T ss_pred             eEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCC---CCEEEEEECCEECCC
Confidence            22111                           11111111 2446789999999999998 6   789999999999876


Q ss_pred             cccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        154 ATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       154 ~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                          +.++.  .....|.|.++..+|+|.|+|.| .|..
T Consensus       161 ----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~  194 (207)
T 3rbs_A          161 ----DEKHDFKDGICTLLITEFSKKDAGIYEVIL-KDDR  194 (207)
T ss_dssp             ----CCCCCCSSEEEEEEETTCCGGGCEEEEEEE-EETT
T ss_pred             ----CCceEcCCCEEEEEECCCCcccCEEEEEEE-EcCC
Confidence                33443  34567999999999999999999 7773

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.87  E-value=4.4e-21  Score=153.33  Aligned_cols=190  Identities=19%  Similarity=0.186  Sum_probs=128.0

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      |.+...|. ..+.+|++++|.|.+.+ +   ...+.|+|+|..+..... ..+..  .....|.|.+++.+|+|.|+|.+
T Consensus         8 P~i~~~P~-~~V~~G~~VtL~C~~~~-~---~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   81 (257)
T 1b6u_A            8 PSLLAHPG-PLVKSEETVILQCWSDV-R---FQHFLLHREGKFKDTLHL-IGEHHDGVSKANFSIGPMMQDLAGTYRCYG   81 (257)
T ss_dssp             CEECCBSC-SEEESSCCEEEEEEESS-C---CSEEEEEEESTTCEEEEE-ECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred             CEEEEcCC-CEecCCCCEEEEEecCC-C---CcEEEEEECCCCCCccee-eeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence            34444454 55778999999999875 3   468999999875532000 01111  34678999999999999999999


Q ss_pred             EcCCCC---CCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCC
Q psy15235        186 IDPKST---NTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP  259 (323)
Q Consensus       186 ~~~~~~---~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~  259 (323)
                       .+...   ....+..+.|.|..   +|.+...+...+.+|++++|.|.+.+. ++.+.|+++|..+..........   
T Consensus        82 -~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~---  156 (257)
T 1b6u_A           82 -SVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKV---  156 (257)
T ss_dssp             -ECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCS---
T ss_pred             -eccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCC-CcEEEEEECCcccCccccccccc---
Confidence             54321   12345566777764   466664445568899999999999865 46899999998765322111110   


Q ss_pred             CCCCcceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEcceecCc
Q psy15235        260 EKGTANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       260 ~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~~~~~~  311 (323)
                       .+.....|.|.+++  |+|.|+|.|.|..+.. ....+..+.|.|.+.|...
T Consensus       157 -~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~  206 (257)
T 1b6u_A          157 -NGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNS  206 (257)
T ss_dssp             -SSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC---
T ss_pred             -CCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCC
Confidence             11136889999998  9999999999764321 1345677889999887654

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.87  E-value=1.4e-21  Score=152.41  Aligned_cols=172  Identities=16%  Similarity=0.285  Sum_probs=117.0

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y  181 (323)
                      ...+.+|++++|.|.+.+.+   .+.+.|+|.  +.....        .....+++.    .....|.|.+++.+|+|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLS---DVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADY   85 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTT---TSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCC---CceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEE
Confidence            66788999999999999777   789999982  221110        001234443    3467899999999999999


Q ss_pred             EEEEEcCCCCC-CCCceeeeeEEE----ecceeeee-ceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCee
Q psy15235        182 SCRLIDPKSTN-TTPLAQADFDVI----MKPTAKLV-ETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRI  253 (323)
Q Consensus       182 ~C~~~~~~~~~-~~~~~~~~l~v~----~~p~~~~~-~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~  253 (323)
                      .|.+ .+..+. ........|.|.    .+|.+... ....+.+|+.++|.|.+.|. |+ +.+.|+++|..+.......
T Consensus        86 ~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  164 (213)
T 3mj8_L           86 YCQS-WDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTT  164 (213)
T ss_dssp             EEEE-EETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC
T ss_pred             EEEe-ccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccC
Confidence            9999 555321 123455677777    56655532 23334479999999999885 44 4899999999875321111


Q ss_pred             eeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        254 KLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       254 ~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ............+.|+|.++..+|.|.|+|.|.|..+.
T Consensus       165 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3mj8_L          165 QPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT  202 (213)
T ss_dssp             CCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred             CcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence            10000000112467999999999999999999999844

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.87  E-value=6.6e-22  Score=159.86  Aligned_cols=253  Identities=14%  Similarity=0.155  Sum_probs=97.4

Q ss_pred             eeceEEecCCcEEEEEEec-cCce-EEEEEc-CccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc
Q psy15235         28 FGDTEIMEGAPINISCILT-IFEQ-VKWQLN-GRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN  104 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~-~~~~-v~W~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~  104 (323)
                      |....|.+|+++.|+|... +.+. +.|.-. ++.....           .......+.+.++++.|.|+|++.......
T Consensus         6 P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~-----------~g~~~~~~~l~~v~~~~~y~C~~~~~~~~~   74 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLL-----------PGNNRKVYELSNVQEDSQPMCYSNCPDGQS   74 (291)
T ss_dssp             CSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCC-----------SCSSEEEEEEESCCSCCCCEEEEECSSCEE
T ss_pred             CCccEEcCCCeEEEEEeCCCCCCccceEEecCCCccccc-----------CCCceEEEEEEecccCCeEEEEEEcCCccE
Confidence            4567899999999999954 3444 888541 1111100           011222456667766778999997543322


Q ss_pred             ceeeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeec
Q psy15235        105 AITGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTV  175 (323)
Q Consensus       105 ~~~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  175 (323)
                      .....+.+         .+....+.+|+.++|.|.+.+..|.+.++|+|||++..+.... ...  ......+.+.....
T Consensus        75 ~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~-~~~--~~~~~~l~~~~~~~  151 (291)
T 1mq8_A           75 TAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP-AVG--EPAEVTTTVLVRRD  151 (291)
T ss_dssp             EEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEE-CCB--TTEEEEEECCCSSS
T ss_pred             EEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeeccc-CCC--CCceEEEEeeeeec
Confidence            22222222         1111225679999999999998765335799999998876411 000  12334566666666


Q ss_pred             CCCeeEEEEEEcCCCCC------CCCceeeeeEEEecceee--eeceeEEeeCCeEEEEEEEecCCCC---cEEEEECCe
Q psy15235        176 DDAGQYSCRLIDPKSTN------TTPLAQADFDVIMKPTAK--LVETLTVIEGEKLRLECLVVGSPPP---TVEWRIGND  244 (323)
Q Consensus       176 ~d~G~y~C~~~~~~~~~------~~~~~~~~l~v~~~p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~~~~  244 (323)
                      +|.+.|+|+| .+..+.      ...+....|.|.++|...  +.....+.+|+.++|.|.+.|+|++   .+.|+++|.
T Consensus       152 D~g~~~~C~A-~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~  230 (291)
T 1mq8_A          152 HHGANFSCRT-ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ  230 (291)
T ss_dssp             CSSCEEEEEE-EEECGGGTSCEEEECCCCEECBC----------------------------------------------
T ss_pred             cCCceEEEEE-EecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCE
Confidence            6667999999 554321      124666788888875321  1112357889999999999998554   599999998


Q ss_pred             eeeccCCeeeeecCCCCCCcceeEEEeec---CcCC--CeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        245 TYFRSQGRIKLSEHPEKGTANSVLQIDEA---TMAD--RGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v---~~~d--~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      .+....   .    .    .+..+++...   .+++  .+.|+|.|.|..    .+.+....|.|.+-|.+
T Consensus       231 ~l~~~~---~----~----~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~----~~~~~~~~l~v~~~~~~  286 (291)
T 1mq8_A          231 RLNPTV---T----Y----GNDSFSAKASVSVTAEDEGTQRLTCAVILGN----QSQETLQTVTIYSFPAP  286 (291)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ecCcee---e----e----cCCeEEEEEecceeEcCCCCEEEEEEEEeCC----cceEEEEEEEEEcCCCc
Confidence            875311   0    0    1222333322   3434  456778888644    23455666666654443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.87  E-value=6.1e-20  Score=161.78  Aligned_cols=179  Identities=20%  Similarity=0.205  Sum_probs=111.2

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      ..|+.++|.|.+.+..|. ...|+|+++|..+......       ++.+ .....|.|.....+|.|.|+|.| .|..+.
T Consensus       310 ~~g~~~~L~C~v~g~~P~-~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~-~~~s~L~i~~~~~~d~g~y~C~a-~n~~~~  386 (512)
T 1zvo_C          310 WLRDKATFTCFVVGSDLK-DAHLTWEVAGKVPTGGVEEGLLERHSNGSQ-SQHSRLTLPRSLWNAGTSVTCTL-NHPSLP  386 (512)
T ss_pred             ccCCceEEEEEEeceECC-CeEEEEEECCEeccCceeccceecCCCCeE-EEEEEEEEchHHhcCCCeEEEEE-EeCCCC
Confidence            469999999999987542 3599999999876521000       1111 22346888888888999999999 676433


Q ss_pred             CCCceeeeeEE----EecceeeeeceeEEeeCCeEE-EEEEEecCCCC--cEEEEECCeeeeccCCee-eeecCCCC--C
Q psy15235        193 TTPLAQADFDV----IMKPTAKLVETLTVIEGEKLR-LECLVVGSPPP--TVEWRIGNDTYFRSQGRI-KLSEHPEK--G  262 (323)
Q Consensus       193 ~~~~~~~~l~v----~~~p~~~~~~~~~~~~g~~~~-l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~-~~~~~~~~--~  262 (323)
                      .. ...+....    ..+|.+.......  .|+.+. |.|.+.|++++  .+.|++||..+....... ......++  .
T Consensus       387 ~~-~~~~~~~~~~~~~~~p~v~~~~~~~--~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~  463 (512)
T 1zvo_C          387 PQ-RLMALREPAAQAPVKLSLNLLASSD--PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTF  463 (512)
T ss_pred             CC-ceeEEeecCCCCCCCCEEEEEccCc--CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEE
Confidence            22 22222111    2345544222111  788999 99999986443  689999998875432110 01100111  1


Q ss_pred             CcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       263 ~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ...+.|.|.....+|.|.|+|.|.|....  ........|.|..
T Consensus       464 ~~~s~L~v~~~~~~~~g~YtC~v~h~~l~--~~~~~~~~~~v~~  505 (512)
T 1zvo_C          464 WAWSVLRVPAPPSPQPATYTCVVSHEDSR--TLLNASRSLEVSY  505 (512)
T ss_pred             EEEEEEEECchhcCCCCeEEEEEEecCCC--CceEEEEEEEecc
Confidence            12356788888888899999999998754  2344455555543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.87  E-value=4.1e-21  Score=153.46  Aligned_cols=187  Identities=12%  Similarity=0.263  Sum_probs=116.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCC--CceEEEEECCeeccc-----------cccc--cCcEE-----eceeEEEEee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGD--DYQIVWYKGNKSITE-----------ATEL--SGRLT-----QSKDSITIRK  172 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~--~~~i~W~~~~~~~~~-----------~~~~--~~~~~-----~~~~~l~i~~  172 (323)
                      .+....+..|++++|.|.+.+.++..  ...+.|++++.....           ...+  ..++.     .....|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            45555688999999999998876310  225999996432210           0000  11111     2345699999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeeeecc-
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRS-  249 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~-  249 (323)
                      ++.+|+|.|+|.+ .+..  ........|.|..+|.+.......+..|..+.|.|.+.| .|.+ .+.|++++..+... 
T Consensus        89 v~~~D~G~Y~C~~-~~~~--~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~  165 (248)
T 3pv7_A           89 IQLEEAGEYRCEV-VVTP--LKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPI  165 (248)
T ss_dssp             CCGGGCEEEEEEE-EETT--EEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCE
T ss_pred             CCHHHCeEEEEEE-EeCC--ccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcc
Confidence            9999999999999 5552  234567788888888877655555667888899999988 7888 99999998643211 


Q ss_pred             -----CCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        250 -----QGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       250 -----~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                           ...........+ ....+.|.|.....+|.|.|+|.|.|..+.  ......+.|.|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~--~~~~~~v~l~V  224 (248)
T 3pv7_A          166 EISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLH--TPLRSNFTLTA  224 (248)
T ss_dssp             EECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCS--SCEEEEECC--
T ss_pred             ccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCC--CCcEEEEEEEE
Confidence                 000011100111 123577999999999999999999999865  34666777777

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.86  E-value=2.4e-21  Score=156.62  Aligned_cols=185  Identities=15%  Similarity=0.288  Sum_probs=121.9

Q ss_pred             eCCceeEEecCCcEEEEEEee---cCCCCCCceEEEEECCeeccc--------------cccccCcEE------eceeEE
Q psy15235        112 IEPKYKVFEYRVPFTLKCNVT---SPPPGDDYQIVWYKGNKSITE--------------ATELSGRLT------QSKDSI  168 (323)
Q Consensus       112 ~~~~~~~~~~g~~v~l~C~~~---~~~~~~~~~i~W~~~~~~~~~--------------~~~~~~~~~------~~~~~l  168 (323)
                      +.+....+.+|++++|.|.+.   +.+   .+.|.|++++.....              ...+..++.      ..+..|
T Consensus        10 ~~~~~~~v~~G~~v~L~C~~~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   86 (268)
T 3mj6_A           10 VSSPQLRVHVGESVLMGCVVQRTEEKH---VDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL   86 (268)
T ss_dssp             --CCEEEEETTCCEEECCBCCCSSCCC---EEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred             cCCCceEEecCCcEEEEEEeecCCCCc---eEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence            355566788999999999987   445   689999996543211              111223443      233789


Q ss_pred             EEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE---ecCCCCcEEEEECCee
Q psy15235        169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV---VGSPPPTVEWRIGNDT  245 (323)
Q Consensus       169 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~---~g~p~~~~~W~~~~~~  245 (323)
                      .|.+++.+|+|.|+|.+ .+..........+.|.|.  +  ..+....+.+|+.++|.|.+   .+.|.+.+.|++++..
T Consensus        87 ~I~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~l~V~--~--~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~  161 (268)
T 3mj6_A           87 LLQDVQKADEGIYTCEI-RLKNESMVMKKPVELWVL--P--EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGS  161 (268)
T ss_dssp             EECSCCGGGCEEEEEEE-EETTCCCEEEEEEEEEEE--C--CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTT
T ss_pred             EECCCCHhHCEEEEEEE-EecCCcceEEEEEEEEEe--c--cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCC
Confidence            99999999999999999 555323223334444443  2  12345678899999999999   5678899999994322


Q ss_pred             eec-----------------cCC----eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        246 YFR-----------------SQG----RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       246 ~~~-----------------~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      ...                 ...    +..+.  .........|.|.+++.+|+|.|+|.|.|..|.    ....+.|.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~----~~~~~~l~V  235 (268)
T 3mj6_A          162 HTEEETVLSYDSNMRSGKFQSLGRFRNRVDLT--GDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE----SRKTIVLHV  235 (268)
T ss_dssp             CSSCEEEEEEETTSSSCEEECSSTTTTTEEEC--SCGGGTBCCEEECSCCGGGCEEEEEEEEETTEE----EEEEEEEEE
T ss_pred             CCcceeEEEecCCCCccccccccccccceEee--ccCCCCeEEEEECcCChhhCeEEEEEEEcCCce----EEEEEEEEE
Confidence            100                 001    11111  000124678999999999999999999998855    788888888


Q ss_pred             cceecC
Q psy15235        305 KGKSFG  310 (323)
Q Consensus       305 ~~~~~~  310 (323)
                      ...++.
T Consensus       236 ~~~~p~  241 (268)
T 3mj6_A          236 VQDEFQ  241 (268)
T ss_dssp             ECC---
T ss_pred             EcCCCe
Confidence            555443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.86  E-value=6.8e-21  Score=148.58  Aligned_cols=174  Identities=14%  Similarity=0.295  Sum_probs=116.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc--------ccccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT--------EATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~--------~~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|.+.+.+   .+.|.|+|++  ..+.        .......++.    .....|.|.+++.+|+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            7 SPATLSVTPGNSVSLSCRASQSI---GNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCccEEEeCCCcEEEEEECCCCC---CCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            45666788999999999999887   6789999853  2210        0011124554    2445899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEe---cceeee-eceeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeeeecc-CC
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKL-VETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRS-QG  251 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~-~~  251 (323)
                      |.|+|.+ .+..+.. ......+.|..   +|.+.. +.......|+.+.|.|.+.| .|.+ .+.|+++|..+... ..
T Consensus        84 G~Y~C~~-~~~~~~~-~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  161 (213)
T 3d9a_L           84 GMYFCQQ-SNSWPYT-FGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  161 (213)
T ss_dssp             EEEEEEE-CSSSSCE-ECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred             EEEEEee-ecCCcce-eCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeee
Confidence            9999999 6653321 12233566654   555553 22333447899999999987 5665 89999999987643 11


Q ss_pred             eeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        252 RIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       252 ~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ........++ ....+.|.|.++..+|.|.|+|.|.|....
T Consensus       162 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          162 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             cCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence            1111100100 012468999999999999999999998844

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.86  E-value=2.3e-20  Score=143.32  Aligned_cols=164  Identities=17%  Similarity=0.227  Sum_probs=117.0

Q ss_pred             EeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCC
Q psy15235         27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPR  102 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~  102 (323)
                      .+.+..+.+|++++|.|.+  .+.+.+.|+++|..+...... +.  ......+...|.|.+++.  +|.|+|.+.+..+
T Consensus        11 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~   87 (194)
T 2a38_A           11 PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP-GV--QISFSDGRAKLTIPAVTKANSGRYSLKATNGSG   87 (194)
T ss_dssp             CCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTST-TC--EEEEETTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCC-ce--EEEeCCCEEEEEECCCCcccCEEEEEEEEcCCc
Confidence            4567889999999999994  466799999999887664211 11  223345667788877665  9999999987665


Q ss_pred             cccee-----------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeE
Q psy15235        103 MNAIT-----------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDS  167 (323)
Q Consensus       103 ~~~~~-----------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~  167 (323)
                      .....           +.+...+....+..|+.+.|.|.+.+.|   .+.+.|++++..+..    ..++.    .....
T Consensus        88 ~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~  160 (194)
T 2a38_A           88 QATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP---TPVVKFYRDGAEIQS----SLDFQISQEGDLYS  160 (194)
T ss_dssp             EEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEES---CCEEEEEETTEECCC----SSSEEEEEETTEEE
T ss_pred             eEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEec---CCeEEEEECCEECCC----CCcEEEEEcCCEEE
Confidence            43221           2222234445577899999999999887   678999999998876    44443    33447


Q ss_pred             EEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        168 ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       168 l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      |.|.++..+|+|.|+|.+ .|..+.  ....+.|.|
T Consensus       161 L~i~~~~~~d~G~Y~C~a-~n~~g~--~~~~~~l~V  193 (194)
T 2a38_A          161 LLIAEAYPEDSGTYSVNA-TNSVGR--ATSTAELLV  193 (194)
T ss_dssp             EEEEEECGGGCEEEEEEE-EETTEE--EEEEEEEEE
T ss_pred             EEECCCChhcCeEEEEEE-EeCCCc--eEEEEEEEE
Confidence            999999999999999999 777332  334444443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.86  E-value=1.7e-20  Score=143.85  Aligned_cols=157  Identities=15%  Similarity=0.226  Sum_probs=108.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------------cccccCcEE-eceeEEEEeeeecCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------------ATELSGRLT-QSKDSITIRKTTVDD  177 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------------~~~~~~~~~-~~~~~l~i~~~~~~d  177 (323)
                      .|....+.+|++++|.|.+.+..+  .+.|.|++++..+..              ...+.+|+. ..+..|.|.+++.+|
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D   81 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEK--VNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMED   81 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSC--CCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGG
T ss_pred             CCeEEEEEecCeEEEeccCCCccc--ccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCccc
Confidence            355566889999999999876442  469999998765421              001123443 346789999999999


Q ss_pred             CeeEEEEEEcCCCCCCCCceeeeeEEEecc---eeeeeceeEEeeCC-eEEEEEEEecC-CCCcEEEEECCeeeeccCCe
Q psy15235        178 AGQYSCRLIDPKSTNTTPLAQADFDVIMKP---TAKLVETLTVIEGE-KLRLECLVVGS-PPPTVEWRIGNDTYFRSQGR  252 (323)
Q Consensus       178 ~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~g~-~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~  252 (323)
                      +|.|.|.+ .+..+.  ....+.|.|..++   .+.... .....|. .++|.|.+.|. |.|.+.|++++..+..    
T Consensus        82 ~G~Y~C~~-~~~~~~--~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~----  153 (193)
T 2if7_A           82 TGSYRAQI-STKTSA--KLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS----  153 (193)
T ss_dssp             CEEEEEEE-ECSSCE--EEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES----
T ss_pred             CceEEEEE-EecCCC--eEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC----
Confidence            99999999 665322  3346677776543   333222 1233465 89999999885 5789999999876531    


Q ss_pred             eeeecCCCCCCcceeEEEeecCcC-CCeEEEEEEeecccC
Q psy15235        253 IKLSEHPEKGTANSVLQIDEATMA-DRGNYYCHGNNVATR  291 (323)
Q Consensus       253 ~~~~~~~~~~~~~~~L~i~~v~~~-d~G~y~C~a~n~~g~  291 (323)
                                  ...|+|.....+ |.|.|+|.|.|..|.
T Consensus       154 ------------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~  181 (193)
T 2if7_A          154 ------------QPNLTVSWDPRISSEQDYTCIAENAVSN  181 (193)
T ss_dssp             ------------SSEEEEEECTTTCSCCEEEEEEEETTEE
T ss_pred             ------------CCeEEEEeccCcCCCCcEEEEEECCCCc
Confidence                        345677654554 899999999999965

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.86  E-value=2.7e-20  Score=143.29  Aligned_cols=165  Identities=16%  Similarity=0.151  Sum_probs=117.4

Q ss_pred             EEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccC
Q psy15235         26 TYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIP  101 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~  101 (323)
                      ..+.++.+.+|+++.|.|.+  .+.+.+.|+++|..+....   ..........+...|.|.+++.  +|.|+|.+.+..
T Consensus         9 ~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   85 (197)
T 2j8h_A            9 EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG---LKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQG   85 (197)
T ss_dssp             ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCS---SSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCC---CcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECC
Confidence            34567889999999999995  4568999999998776531   1222223345656777777655  999999998776


Q ss_pred             Cccceeeeeee-------------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----ec
Q psy15235        102 RMNAITGNYDI-------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QS  164 (323)
Q Consensus       102 ~~~~~~~~~~~-------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~  164 (323)
                      +.......+.+             .+....+..|+.+.|.|.+.+.|   .+.+.|++++..+..    ..++.    ..
T Consensus        86 g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~~~~~~----~~~~~~~~~~~  158 (197)
T 2j8h_A           86 GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP---DPVITWQKGQDLIDN----NGHYQVIVTRS  158 (197)
T ss_dssp             EEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEES---CCEEEEEESSCEECS----SSSCEEEECSS
T ss_pred             CceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecC---CCcEEEEECCEEeec----CCCEEEEEcCC
Confidence            55322222221             11234477899999999999988   689999999988875    44443    35


Q ss_pred             eeEEEEee-eecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        165 KDSITIRK-TTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       165 ~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      ...|.|.+ +..+|+|.|+|.+ .|..+.  ....+.|.|
T Consensus       159 ~~~L~i~~~~~~~d~G~Y~C~a-~N~~g~--~~~~~~l~V  195 (197)
T 2j8h_A          159 FTSLVFPNGVERKDAGFYVVCA-KNRFGI--DQKTVELDV  195 (197)
T ss_dssp             EEEEECTTCCCGGGCEEEEEEE-EETTEE--EEEEEEEEE
T ss_pred             ceEEEEeCCCCcccCEeEEEEE-EeCCCc--EeEEEEEEE
Confidence            67899999 9999999999999 777433  444555554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.86  E-value=1.5e-21  Score=162.71  Aligned_cols=177  Identities=18%  Similarity=0.219  Sum_probs=126.1

Q ss_pred             eeEEecCCcEEEEEEeecCCC------CCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCe-eEEEEEEcC
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPP------GDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAG-QYSCRLIDP  188 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~------~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~  188 (323)
                      ..++.+|+++.|.|.+.+.++      ...+.|.|++++..+..    ..+. .....|.|.+++.+|+| .|+|.+ .+
T Consensus        38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~----~~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a-~n  111 (329)
T 3oq3_B           38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP----LNRR-VKNGDLWIANYTSNDSHRRYLCTV-TT  111 (329)
T ss_dssp             EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEE----CSTT-EETTEEEESSCCGGGGGCCEEEEE-EC
T ss_pred             eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccc----cCce-eecceEEEcCCChHhCCCcEEEEE-Ee
Confidence            345788999999999988531      00579999999987654    2222 34668999999999999 999999 67


Q ss_pred             CCCCCCCceeeeeEEE-ecceee-eeceeEEeeCCeEEEEEEEecCC-CCcEEEEECCeeeeccCCeeeeecCCCCCCcc
Q psy15235        189 KSTNTTPLAQADFDVI-MKPTAK-LVETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTAN  265 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v~-~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (323)
                      ..+.  ........+. .+|.+. ......+.+|+.+.|.|.+.|.| .+.+.|++++..+.....++...        .
T Consensus       112 ~~g~--~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~--------~  181 (329)
T 3oq3_B          112 KNGD--CVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS--------G  181 (329)
T ss_dssp             TTSC--EEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE--------T
T ss_pred             CCCc--eeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC--------C
Confidence            6332  1122222333 344332 22223356799999999999999 89999999999886444555444        5


Q ss_pred             eeEEEeecCcCCCeEEEEEEeec--ccCCCCCceeEEEEEEccee
Q psy15235        266 SVLQIDEATMADRGNYYCHGNNV--ATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       266 ~~L~i~~v~~~d~G~y~C~a~n~--~g~~~~~~~~~~~l~v~~~~  308 (323)
                      ..|.|.+++.+|+|.|+|.|.|.  .|.........+.|.|...|
T Consensus       182 ~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          182 QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred             CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence            78999999999999999999997  65422223334778887665

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.86  E-value=9.4e-21  Score=146.40  Aligned_cols=173  Identities=19%  Similarity=0.245  Sum_probs=114.5

Q ss_pred             eEEecCCcEEEEEEeecCC---CCCCceEEEEECCeeccc--------cccccCcEE---eceeEEEEeeeecCCCeeEE
Q psy15235        117 KVFEYRVPFTLKCNVTSPP---PGDDYQIVWYKGNKSITE--------ATELSGRLT---QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~---~~~~~~i~W~~~~~~~~~--------~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~  182 (323)
                      ..+..|++++|.|.+.+..   |  .+.+.|++++..+..        ...+..|..   .....|.|.+++.+|+|.|+
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~--~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELA--QTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHH--HCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEE
T ss_pred             EEEEeCCCEEEecccCCCccccc--ccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEE
Confidence            4567899999999986421   1  579999999887631        111222332   24568999999999999999


Q ss_pred             EEEEcCCCCCCCC---ceeeeeEEEec---ceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeee
Q psy15235        183 CRLIDPKSTNTTP---LAQADFDVIMK---PTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKL  255 (323)
Q Consensus       183 C~~~~~~~~~~~~---~~~~~l~v~~~---p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~  255 (323)
                      |.+ .+..+....   ...+.|.|..+   |.+...   ....|+.+.|.|.+ .|+|.|.+.|+++|..+.....+...
T Consensus        82 C~~-~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~---~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~  157 (201)
T 1dr9_A           82 CVV-LKYEKDAFKREHLAEVTLSVKADFPTPSISDF---EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQ  157 (201)
T ss_dssp             EEE-EECCTTSCEEEEEEEEEEEEECCCCCCEEEEE---ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEE
T ss_pred             EEE-EcCCCCccccccccEEEEEEcCCCCCCceEec---cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEe
Confidence            999 665333222   35666666654   333221   12458899999999 59999999999999887644333322


Q ss_pred             ecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       256 ~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                      .  ..++ ......+..+..+|.|.|+|.|.|..|.    .+..+.+
T Consensus       158 ~--~~~~-~~~~~~~~~v~~~d~g~Y~C~a~n~~~~----~s~~~~~  197 (201)
T 1dr9_A          158 D--PETE-LYAVSSKLDFNMTTNHSFMCLIKYGHLR----VNQTFNW  197 (201)
T ss_dssp             C--TTTC-CEEEEEEEEEETTSCEEEEEEEEETTCC----EEEEEEE
T ss_pred             c--CCCc-EEEEEEEEEEEecCCCEEEEEEecCcce----eeeEEec
Confidence            2  1111 1122234456678999999999999965    5555544

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.86  E-value=7.9e-21  Score=148.28  Aligned_cols=174  Identities=21%  Similarity=0.367  Sum_probs=118.9

Q ss_pred             CCceeEEecCCcEEEEEEeecC------CCCCCceEEEEECCeec------cc-------cccccCcEE------eceeE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSP------PPGDDYQIVWYKGNKSI------TE-------ATELSGRLT------QSKDS  167 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~------~~~~~~~i~W~~~~~~~------~~-------~~~~~~~~~------~~~~~  167 (323)
                      .|....+.+|++++|.|.+.+.      .+  .+.+.|+|++...      ..       .....+|+.      .....
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s   83 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSP--PLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS   83 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCC--CEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCC--ceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence            4556678899999999998764      12  5799999986521      10       012234554      12457


Q ss_pred             EEEeeeecCCCeeEEEEEEcCCCCCC--CCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecC----CCCcEE
Q psy15235        168 ITIRKTTVDDAGQYSCRLIDPKSTNT--TPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGS----PPPTVE  238 (323)
Q Consensus       168 l~i~~~~~~d~G~y~C~~~~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~----p~~~~~  238 (323)
                      |.|.+++.+|+|.|.|.+ .+..+..  .....+.|.|..   +|.+..+.  .+.+|+.++|.|.+.+.    |.|.+.
T Consensus        84 L~I~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~  160 (214)
T 2zg1_A           84 LSIGDARMEDTGSYFFRV-ERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLTFS  160 (214)
T ss_dssp             EEECSCCGGGCEEEEEEE-EETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred             EEEccCCHhhCceEEEEE-EcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCceEE
Confidence            999999999999999999 5542111  123456677766   34554432  36789999999999764    788999


Q ss_pred             EEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |++++.....  ..         ....+.|+|..+..+|.|.|+|.|.|..+.  .+.+..+.|.|
T Consensus       161 W~~~~~~~~~--~~---------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~--~~~~~~v~l~V  213 (214)
T 2zg1_A          161 WTGNALSPLD--PE---------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQ--VTTERTVQLNV  213 (214)
T ss_dssp             EESSTTSSSC--SS---------CCCSSEEEECCCTTCCSCEEEEEEECC------CCEEEEECCC
T ss_pred             EeCCCCccCC--CC---------ceeEEEEEEecccHHcCcEEEEEEEeCCCC--cceEEEEEEEe
Confidence            9998865321  11         114688999999999999999999998754  44666776655

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.86  E-value=2.9e-22  Score=167.35  Aligned_cols=178  Identities=21%  Similarity=0.323  Sum_probs=68.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      .+....+.+|+.++|.|.+.+.+|  .+.+.|+++|..+..    ..++......|.|.+++.+|+|.|+|.+ .+. + 
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p--~~~v~W~k~g~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~n~-~-   84 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGP--MGPTVWVKDGTGLVP----SERVLVGPQRLQVLNASHEDSGAYSCRQ-RLT-Q-   84 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCC--CcceEEEECCeeCCC----cccEEeccceEEEeecccccCEEEEEEE-EeC-C-
Confidence            355566788999999999998754  579999999988866    5555545678999999999999999999 665 2 


Q ss_pred             CCCceeeeeEEEec----------------------ceeeee-----ceeEEeeCCeEEEEEEEecCCCCcEEEEECCee
Q psy15235        193 TTPLAQADFDVIMK----------------------PTAKLV-----ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDT  245 (323)
Q Consensus       193 ~~~~~~~~l~v~~~----------------------p~~~~~-----~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~  245 (323)
                       .....+.|.|...                      |.+..+     ....+.+|+.+.|.|.+.|.|.+.+.|++++..
T Consensus        85 -~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~  163 (334)
T 1ry7_B           85 -RVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE  163 (334)
T ss_dssp             -----------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBC
T ss_pred             -eEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEE
Confidence             3444555666543                      222211     135678899999999999999999999999988


Q ss_pred             eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235        246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      +..........    .......|.|.++..+|+|.|+|.|.|..|.    ....+.|.|...+
T Consensus       164 ~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~~  218 (334)
T 1ry7_B          164 FRGEHRIGGIK----LRHQQWSLVMESVVPSDRGNYTCVVENKFGS----IRQTYTLDVLERS  218 (334)
T ss_dssp             CCTTSSTTCCC----CCTTTTEEEECSCCGGGCCCEEEEEEETTEE----EEEEEEEEEECCC
T ss_pred             Cccccccccee----cccceEEEEECCCCcccCEEEEEEEEeCCCC----EEEEEEEEEecCC
Confidence            76432211111    1113578999999999999999999999965    6777888887643

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.86  E-value=2e-20  Score=154.99  Aligned_cols=185  Identities=18%  Similarity=0.158  Sum_probs=127.1

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .|.+...|. ..+.+|++++|.|.+.+.+    +.+.|+|+|..+..    ..........|.|.+++.+|+|.|+|.+ 
T Consensus        24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~----~~~~W~k~g~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-   93 (316)
T 3vh8_G           24 KPFLSAWPS-AVVPRGGHVTLRCHYRHRF----NNFMLYKEDRIHIP----IFHGRIFQESFNMSPVTTAHAGNYTCRG-   93 (316)
T ss_dssp             CCEEEEESC-SEEETTSCEEEEEEBTTBC----CSEEEEESSCSSSC----HHHHCCBSSCEEECSCCGGGCEEEEEEE-
T ss_pred             CCEeeccCC-CccCCCCCEEEEEEccCCC----ceEEEEeCCCccce----eecCCcceEEEEECCCCcccCeEEEEEE-
Confidence            344555555 4577999999999998864    58999999987643    1111134678999999999999999999 


Q ss_pred             cCCC---CCCCCceeeeeEEEe---cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235        187 DPKS---TNTTPLAQADFDVIM---KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE  260 (323)
Q Consensus       187 ~~~~---~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  260 (323)
                      .+..   .....+..+.|.|..   +|.+...+...+.+|+.++|.|.+. .+++.+.|++++..+..........    
T Consensus        94 ~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~----  168 (316)
T 3vh8_G           94 SHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIH----  168 (316)
T ss_dssp             BCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEE----
T ss_pred             EcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeec----
Confidence            5532   122344556666654   4556554445588999999999995 4567899999987664221111111    


Q ss_pred             CCCcceeEEEeecCcCCCeEEEEEEeecccCC-CCCceeEEEEEEcc
Q psy15235        261 KGTANSVLQIDEATMADRGNYYCHGNNVATRN-SQPNEAFVYVRVKG  306 (323)
Q Consensus       261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~-~~~~~~~~~l~v~~  306 (323)
                      .......|.|.+++.+|+|.|+|.|.|..|.. .......+.|.|.+
T Consensus       169 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~  215 (316)
T 3vh8_G          169 DGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTG  215 (316)
T ss_dssp             TTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEEC
T ss_pred             CCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecC
Confidence            01136789999999999999999999998641 11224556666654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.85  E-value=9.8e-20  Score=141.88  Aligned_cols=172  Identities=19%  Similarity=0.267  Sum_probs=118.4

Q ss_pred             EEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec---ccCcceEEEeecc
Q psy15235         26 TYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA---ILESGYVQSSLFI  100 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~G~Y~C~~~~~  100 (323)
                      ..+.+..+.+|+++.|.|.+  .+.+.+.|+++|..+...    ..............|.|.++   .|+|.|+|.+.+.
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~   86 (212)
T 2yd6_A           11 RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ----RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNN   86 (212)
T ss_dssp             ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCT----TEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEET
T ss_pred             eCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCC----ceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcC
Confidence            34567889999999999994  467899999999887653    22222222234566788776   3499999999887


Q ss_pred             CCccceee---------------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---
Q psy15235        101 PRMNAITG---------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---  162 (323)
Q Consensus       101 ~~~~~~~~---------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---  162 (323)
                      .+......               .+...+....+..|+.+.|.|.+.+.|   .+.+.|++++..+.... ...++.   
T Consensus        87 ~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~p~v~W~~~g~~l~~~~-~~~~~~~~~  162 (212)
T 2yd6_A           87 VGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNP---DPEITWFKDFLPVDTSN-NNGRIKQLR  162 (212)
T ss_dssp             TEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSS---CCEEEEEETTEEC-------CCEEEEE
T ss_pred             CCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCC---CCeEEEEECCccccCcC-CCceEEEEe
Confidence            65532222               222234445577899999999999988   68999999999886511 112332   


Q ss_pred             -eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        163 -QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       163 -~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                       .....|.|.++..+|+|.|+|.| .|..+. ..+..+.|.|...+
T Consensus       163 ~~~~~~L~i~~~~~~d~G~Y~C~a-~N~~G~-~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          163 SESIGALQIEQSEESDQGKYECVA-TNSAGT-RYSAPANLYVRGTK  206 (212)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEE-EETTEE-EECCCEEEEEEC--
T ss_pred             cCCeEEEEEcCCCcccCEEEEEEE-ECCCCc-cccccccEEEEecc
Confidence             33588999999999999999999 777543 34455666666544

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.85  E-value=2e-20  Score=157.11  Aligned_cols=181  Identities=20%  Similarity=0.270  Sum_probs=127.8

Q ss_pred             ceeEEecCCcEEEEEEeecCCC--------CCCceEEEEECCeecc----cc-ccccCcEEeceeEEEEeeeecCCCeeE
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPP--------GDDYQIVWYKGNKSIT----EA-TELSGRLTQSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~--------~~~~~i~W~~~~~~~~----~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y  181 (323)
                      ....+.+|+++.|.|.+.+.+.        ...+.|.|++++....    .. .....++......|.|.+++.+|+|.|
T Consensus        15 ~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   94 (349)
T 4dep_C           15 RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNY   94 (349)
T ss_dssp             CCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEE
T ss_pred             eeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEE
Confidence            3345778999999999987541        0037999999874211    10 012344444566899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEEecceee-----eeceeEEeeCCeEEEEEEE-----ecCCCCcEEEEECCeeeeccCC
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVIMKPTAK-----LVETLTVIEGEKLRLECLV-----VGSPPPTVEWRIGNDTYFRSQG  251 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-----~~~~~~~~~g~~~~l~C~~-----~g~p~~~~~W~~~~~~~~~~~~  251 (323)
                      +|.+ .+..  ......+.|.|..+|...     .+....+.+|+.+.|.|.+     .|.|.+.+.|++++..+... .
T Consensus        95 ~C~a-~n~~--~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~-~  170 (349)
T 4dep_C           95 TCML-RNTT--YCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF-N  170 (349)
T ss_dssp             EEEE-ECSS--CEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSC-S
T ss_pred             EEEE-ecCC--ceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCc-c
Confidence            9999 6762  334556677777654322     2334567889999999985     67899999999999987532 2


Q ss_pred             eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235        252 RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       252 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      ++..        ....|.|.+++.+|+|.|+|.|.|..+.........+.|.|..+
T Consensus       171 ~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~  218 (349)
T 4dep_C          171 NVIP--------EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS  218 (349)
T ss_dssp             SEEE--------ETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             ceee--------cCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEcc
Confidence            2222        24789999999999999999999987320011367777877664

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.85  E-value=1.5e-20  Score=144.07  Aligned_cols=165  Identities=15%  Similarity=0.204  Sum_probs=114.7

Q ss_pred             eeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCc
Q psy15235         28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRM  103 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~  103 (323)
                      +.++.+.+|+++.|.|.+  .+.+.+.|+++|..+...  ..+  +.......  .|.|.+++  |+|.|+|.+.+..+.
T Consensus        14 ~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~--~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~~   87 (192)
T 2iep_A           14 LETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLF--DTR--YSIRENGQ--LLTILSVEDSDDGIYCCTANNGVGG   87 (192)
T ss_dssp             CCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTT--CTT--EEEEGGGT--EEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             ccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEcccc--Ccc--EEEcCCcc--EEEEcCCCcccCeEEEEEEEcCCCc
Confidence            455779999999999994  467799999998877542  111  11222233  45555554  499999999886554


Q ss_pred             c-c--------eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeee
Q psy15235        104 N-A--------ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKT  173 (323)
Q Consensus       104 ~-~--------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~  173 (323)
                      . .        ..+.+...+....+..|+.+.|.|.+.+.+   .+.+.|++++..+..    ..++. .....|.|.++
T Consensus        88 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~L~i~~~  160 (192)
T 2iep_A           88 AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNP---KPSVSWIKGDSALRE----NSRIAVLESGSLRIHNV  160 (192)
T ss_dssp             CEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEES---CCEEEEEETTEECCC----CSSEEECTTSCEEESSC
T ss_pred             eeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccC---CceEEEEeCCEEccC----CCcEEEecCCcEEEecC
Confidence            2 1        112222244455677899999999999987   679999999998876    44544 44557999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      ..+|+|.|+|.+ .|..+.. ....+.|.|..+|
T Consensus       161 ~~~d~G~Y~C~a-~n~~g~~-~s~~~~l~V~~pp  192 (192)
T 2iep_A          161 QKEDAGQYRCVA-KNSLGTA-YSKLVKLEVEVFA  192 (192)
T ss_dssp             CGGGCEEEEEEE-EETTEEE-ECCCEEEEEEC--
T ss_pred             ChhhCEEEEEEE-EcCCCcE-EEEEEEEEEEeCC
Confidence            999999999999 6664332 2345666666544

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.85  E-value=1.8e-21  Score=161.15  Aligned_cols=172  Identities=20%  Similarity=0.227  Sum_probs=120.6

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNT  193 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  193 (323)
                      ...+.+|+.++|.|.+.+.+|  .+.+.|++++..+..    ..++.  .....|.|.+++.+|+|.|+|.+ .+..+  
T Consensus        15 ~~~v~~G~~v~l~C~~~~~~p--~~~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~n~~g--   85 (317)
T 2y25_A           15 SWEVTGECNVLLKCKVANIKK--ETHIVWYKDEREISV----DEKHDFKDGICTLLITEFSKKDAGIYEVIL-KDDRG--   85 (317)
T ss_dssp             EEEEETTTEEEEEEEEESCCT--TCEEEEEETTEEECC----SCC-----CCEEEEETTCCSTTCSCEEEEE-ESSSC--
T ss_pred             eEEECCCCeEEEEEEEcCCCC--CCEEEEEECCeEcCC----CCcEEEECCeEEEEEccCCcccCeEEEEEE-ECCCC--
Confidence            356788999999999998744  689999999998875    34433  45579999999999999999999 66632  


Q ss_pred             CCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEec----------CCCCcEEEEECCeeeeccCCeeeeecCCCCC
Q psy15235        194 TPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVG----------SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG  262 (323)
Q Consensus       194 ~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g----------~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  262 (323)
                      .....+.|.|...|.+. .+....+..|+.+.|.|.+.+          .|.+.+.|++++..+... .++....  .+ 
T Consensus        86 ~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~--~~-  161 (317)
T 2y25_A           86 KDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-DRVKTGV--TG-  161 (317)
T ss_dssp             EEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCC-SSEEEEE--CS-
T ss_pred             cEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCC-CCeEEec--cC-
Confidence            23333444444333221 222233445666666666655          688999999999887644 3333331  11 


Q ss_pred             CcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       263 ~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                       ....|.|.++..+|+|.|+|.|.|..|.    ....+.|.|.
T Consensus       162 -~~~~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~v~  199 (317)
T 2y25_A          162 -EQIWLQINEPTPNDKGKYVMELFDGKTG----HQKTVDLSGQ  199 (317)
T ss_dssp             -SEEEEEEESCCGGGCEEEEEEEECSSCE----EEEEEEECHH
T ss_pred             -CEEEEEECcCCcccCeeEEEEEEeCCce----EEEEEEEeee
Confidence             2467999999999999999999998855    6666666554

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.85  E-value=1e-19  Score=141.84  Aligned_cols=171  Identities=13%  Similarity=0.199  Sum_probs=119.0

Q ss_pred             EEEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec---ccCcceEEEeec
Q psy15235         25 ITYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA---ILESGYVQSSLF   99 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~G~Y~C~~~~   99 (323)
                      +..+.+..+.+|++++|.|.+  .+.+.+.|+++|..+...   ...........+...|.|.++   .|+|.|+|.+.+
T Consensus        10 ~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n   86 (212)
T 2yd1_A           10 IRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGT---QSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAEN   86 (212)
T ss_dssp             EECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTT---STTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEEC
T ss_pred             EcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCC---cceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEe
Confidence            345677889999999999995  466799999999887632   112222223355567777765   459999999988


Q ss_pred             cCCc-cceee---------------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEe
Q psy15235        100 IPRM-NAITG---------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQ  163 (323)
Q Consensus       100 ~~~~-~~~~~---------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~  163 (323)
                      ..+. .....               .+...+....+..|+.++|.|.+.+.+   .+.+.|++++..+...   ..++..
T Consensus        87 ~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~~~~~~---~~~~~~  160 (212)
T 2yd1_A           87 GVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP---TPNIYWIKNQTKVDMS---NPRYSL  160 (212)
T ss_dssp             SSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSS---CCEEEEEETTEECCTT---STTEEE
T ss_pred             CCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCC---CCeEEEEECCeEcccC---CCeEEc
Confidence            7665 22222               222233444577899999999999988   6799999999887641   233443


Q ss_pred             ceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec
Q psy15235        164 SKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK  206 (323)
Q Consensus       164 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~  206 (323)
                      ....|.|.++..+|+|.|+|.| .|..+.. ....+.|.|...
T Consensus       161 ~~~~L~i~~v~~~d~G~Y~C~a-~N~~G~~-~s~~~~l~V~~~  201 (212)
T 2yd1_A          161 KDGFLQIENSREEDQGKYECVA-ENSMGTE-HSKATNLYVKVR  201 (212)
T ss_dssp             ETTEEEECSCCGGGCEEEEEEE-EETTEEE-ECCCEEEEEEC-
T ss_pred             cCCeEEEccCChhhCEEEEEEe-ecCCCce-eEEEEEEEEEec
Confidence            4558999999999999999999 7764332 122356666653

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.85  E-value=2.4e-21  Score=160.36  Aligned_cols=176  Identities=17%  Similarity=0.242  Sum_probs=127.2

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCC
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTP  195 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  195 (323)
                      ...+.+|+.+.|.|.+.+.++  .+.|.|++++..+........++......|.|.+++.+|+|.|+|.+ .+..  ...
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~n~~--g~~   88 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEH--KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVV-RNSS--YCL   88 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCC--SSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECC-CSSS--CCC
T ss_pred             EEEEcCCCcEEEEeeccCcCC--CceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEE-eCCc--eEE
Confidence            455789999999999988775  56999999986543322234555544568999999999999999999 6663  234


Q ss_pred             ceeeeeEEEe-cceee----eeceeEEeeCCeEEEEEEE------ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCc
Q psy15235        196 LAQADFDVIM-KPTAK----LVETLTVIEGEKLRLECLV------VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA  264 (323)
Q Consensus       196 ~~~~~l~v~~-~p~~~----~~~~~~~~~g~~~~l~C~~------~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  264 (323)
                      ...+.+.+.. +|.+.    ......+..|+.+.|.|.+      .|+|.+.+.|++++..+.....++...        
T Consensus        89 ~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~--------  160 (315)
T 1itb_B           89 RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV--------  160 (315)
T ss_dssp             CEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEE--------
T ss_pred             EEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeec--------
Confidence            4444454433 34332    1123567889999999998      888999999999999886544444333        


Q ss_pred             ceeEEEeecCcCCCeEEEEEEe-ecccCCCCCceeEEEEEEc
Q psy15235        265 NSVLQIDEATMADRGNYYCHGN-NVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       265 ~~~L~i~~v~~~d~G~y~C~a~-n~~g~~~~~~~~~~~l~v~  305 (323)
                      ...|.|.+++.+|+|.|+|.|. |..|.. .+....+.+.+.
T Consensus       161 ~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~-~~~~~~~~~~~~  201 (315)
T 1itb_B          161 KDRLIVMNVAEKHRGNYTCHASYTYLGKQ-YPITRVIEFITL  201 (315)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEEEETTEE-EEEEEEEEEEEE
T ss_pred             CceEEEEeceehhCcEEEEEEEcCCCCcE-EEEEEEEEEEEe
Confidence            5689999999999999999999 777651 112445555443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.85  E-value=4.1e-20  Score=143.80  Aligned_cols=173  Identities=16%  Similarity=0.289  Sum_probs=115.2

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc--------ccccccCcEE----eceeEEEEeeeecCCCe
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT--------EATELSGRLT----QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~--------~~~~~~~~~~----~~~~~l~i~~~~~~d~G  179 (323)
                      |....+.+|++++|.|.+.+.+   .+.+.|+++.  ..+.        .......++.    .....|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   83 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESV---TSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA   83 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCcEEEcCCCCEEEEeeCCCcc---CCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCe
Confidence            6667788999999999998877   5789999842  2220        0011234554    23458999999999999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEEe---cceeee-eceeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeeeecc-CCe
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKL-VETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRS-QGR  252 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~-~~~  252 (323)
                      .|.|.+ .+..+.. ......|.|..   +|.+.. +....+..|+.++|.|.+.| .|++ .+.|+++|..+... ...
T Consensus        84 ~Y~C~~-~~~~~~~-~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  161 (210)
T 1lk3_L           84 IYFCQQ-SWNGPLT-FGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDS  161 (210)
T ss_dssp             EEEEEE-CSSSSCE-ECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEE
T ss_pred             EEEEEE-EcCCCce-eCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEc
Confidence            999999 6653221 12233556654   455543 22223347999999999987 4554 89999999887533 111


Q ss_pred             eeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        253 IKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       253 ~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .......++ ....+.|.|.++..+|+|.|+|.|.|....
T Consensus       162 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          162 VTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            111100111 112458999999999999999999998743

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.85  E-value=1.3e-19  Score=139.29  Aligned_cols=163  Identities=15%  Similarity=0.183  Sum_probs=115.5

Q ss_pred             EeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCC
Q psy15235         27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPR  102 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~  102 (323)
                      .+.++.+.+|+.+.|.|.+  .+.+.+.|++++..+...     ..+..........|.|.+++  |+|.|+|.+.+..+
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~   87 (197)
T 3lcy_A           13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS-----RKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVG   87 (197)
T ss_dssp             CCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCC-----SSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSC
T ss_pred             cCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCC-----ccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCC
Confidence            4567889999999999994  567799999999877553     11223334455567776665  49999999987665


Q ss_pred             ccceeeeeee-----------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeE
Q psy15235        103 MNAITGNYDI-----------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDS  167 (323)
Q Consensus       103 ~~~~~~~~~~-----------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~  167 (323)
                      .......+.+           .+....+..|+.+.|.|.+.+.|   .+.+.|++++..+..    ..++.    .....
T Consensus        88 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~p~v~W~~~~~~~~~----~~~~~~~~~~~~~~  160 (197)
T 3lcy_A           88 EVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRP---VPAMTWFHGQKLLQN----SENITIENTEHYTH  160 (197)
T ss_dssp             EEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----CSSEEEEECSSEEE
T ss_pred             ceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeee---CCeeEEeECCEECCC----CCceEEEEcCCEEE
Confidence            5422222211           12334567899999999999988   689999999998876    44443    23378


Q ss_pred             EEEeeeec-CCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        168 ITIRKTTV-DDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       168 l~i~~~~~-~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      |.|.++.. +|+|.|+|.+ .|..+  .....+.|.|.
T Consensus       161 L~i~~~~~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~  195 (197)
T 3lcy_A          161 LVMKNVQRKTHAGKYKVQL-SNVFG--TVDAILDVEIQ  195 (197)
T ss_dssp             EEESSCCHHHHCEEEEEEE-ECSSC--EEEEEEEEEEE
T ss_pred             EEEccccchhhCceEEEEE-EcCcC--ceEEEEEEEEe
Confidence            99999985 8999999999 77743  34455555554

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.85  E-value=1.8e-20  Score=144.44  Aligned_cols=158  Identities=11%  Similarity=0.092  Sum_probs=101.8

Q ss_pred             ceEEecCCcEEEEEE-----eccCceEEEEEcCccceeec------------cCcceEEEeeeeCCeEEEEEeeccc--C
Q psy15235         30 DTEIMEGAPINISCI-----LTIFEQVKWQLNGRNINQSS------------VDSGFAATANLTEDNFKYSIHEAIL--E   90 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~-----~~~~~~v~W~~~g~~~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~--~   90 (323)
                      ++++..|++++|.|.     +.|.+.++|+|+|..+....            ......+......+...|.|.+++.  +
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            467899999999995     34678999999876544321            0011112233446677788887755  9


Q ss_pred             cceEEEeeccCCccceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235         91 SGYVQSSLFIPRMNAITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT  162 (323)
Q Consensus        91 G~Y~C~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~  162 (323)
                      |.|+|.+.+..+.......+.+        .+....+.+|+.++|.|.+.|.|   .|.|+|++++..+........++.
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P---~P~v~W~~~~~~~~~~~~~~~r~~  158 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFP---HPHVQWLMPEGVEPAPTAANGGVM  158 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEES---CCEEEECCC------------CCE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCC---CCEEEEEECCeeecCcccccceEE
Confidence            9999999987766433333322        23333366799999999999988   789999987654432112234443


Q ss_pred             -ece---eEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        163 -QSK---DSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       163 -~~~---~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                       ..+   ..+.+.++..+|+|.|+|.| .|..|
T Consensus       159 ~~~~g~l~il~i~~v~~~D~G~YtC~A-~N~~G  190 (203)
T 4fa8_A          159 KEKDGSLSVAVDLSLPKPWHLPVTCVG-KNDKE  190 (203)
T ss_dssp             ECTTSCEEEEEEEEECSSCCCCEEEEE-ESSSC
T ss_pred             EeCCCCEEEEEECCCCHHHCEEEEEEE-EcCCC
Confidence             222   33455789999999999999 78743

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.85  E-value=1.2e-20  Score=147.62  Aligned_cols=172  Identities=18%  Similarity=0.333  Sum_probs=112.4

Q ss_pred             eeEEecCCcEEEEEEeecC-CCCCCceEEEEECC--eec---c---------ccccccCcEE----eceeEEEEeeeecC
Q psy15235        116 YKVFEYRVPFTLKCNVTSP-PPGDDYQIVWYKGN--KSI---T---------EATELSGRLT----QSKDSITIRKTTVD  176 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~-~~~~~~~i~W~~~~--~~~---~---------~~~~~~~~~~----~~~~~l~i~~~~~~  176 (323)
                      ...+.+|++++|.|.+.+. +   .+.+.|+|..  ...   .         ......+|+.    .....|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   85 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHS---TYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPE   85 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGT---TCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cEEECCCCcEEEEEECCCCCC---CcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcc
Confidence            6668899999999999987 6   6899999832  110   0         0011223443    34567999999999


Q ss_pred             CCeeEEEEEEcCCCC---CCCCceeeeeEEE----ecceeee-eceeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeee
Q psy15235        177 DAGQYSCRLIDPKST---NTTPLAQADFDVI----MKPTAKL-VETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTY  246 (323)
Q Consensus       177 d~G~y~C~~~~~~~~---~~~~~~~~~l~v~----~~p~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~  246 (323)
                      |+|.|.|.+ .+..+   .........|.|.    .+|.+.. +.......|+.++|.|.+.| .|.+ .+.|+++|..+
T Consensus        86 D~G~Y~C~~-~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l  164 (218)
T 3s96_B           86 DEAIYICGV-GDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPI  164 (218)
T ss_dssp             GCEEEEEEE-EEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             cCEEEEEEE-ecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEEC
Confidence            999999999 55532   1123345567776    3455543 33334456789999999987 5766 89999999887


Q ss_pred             eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...................+.|.|.....+|.|.|+|.|.|..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~  209 (218)
T 3s96_B          165 TQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDT  209 (218)
T ss_dssp             --------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEE
T ss_pred             cCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCc
Confidence            542211111100000012356889999999999999999999844

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.84  E-value=1.5e-19  Score=145.00  Aligned_cols=171  Identities=16%  Similarity=0.234  Sum_probs=117.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc---c----------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT---E----------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~---~----------~~~~~~~~~------~~~~~l~i~  171 (323)
                      .|....+.+|++++|.|.+.+.+.. .+.+.|+|+  +..+.   .          ......|+.      .....|.|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTFT-SYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS   84 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGG-GSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCeeecCCCcEEEEEEeccccCC-CceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence            3455678899999999999876411 468999994  22211   0          011235554      124689999


Q ss_pred             eeecCCCeeEEEEEEcCCCCC---CCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCC-----cEEEEE-
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTN---TTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPP-----TVEWRI-  241 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~---~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~-----~~~W~~-  241 (323)
                      +++.+|+|.|.|.+ .+..+.   ........|.|..+|.+. .+....+.+|++++|.|.+.+.|++     .+.|++ 
T Consensus        85 ~v~~~DsG~Y~C~~-~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~  163 (256)
T 1nqb_A           85 SLTSEDSAVYYCAR-YDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ  163 (256)
T ss_dssp             SCCGGGCEEEEEEE-CCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             cCChhhCEEEEEEE-eeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence            99999999999999 666331   112234567777666554 3445678999999999999988765     899999 


Q ss_pred             -CCeeeec-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        242 -GNDTYFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       242 -~~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                       ++..+..           ...++....    .....+|+|.+++.+|+|.|+|.|.|..
T Consensus       164 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  219 (256)
T 1nqb_A          164 KPGQSPKLLIYKVSNRFSGVPDRFSGSG----SGTDFTLKISRVEAEDLGVYYCFQGSHV  219 (256)
T ss_dssp             CTTSCEEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCCCcEEEEEEeCCCCCccCCcEEEEc----cCCEEEEEECCCChHHCEEEEEEEccCC
Confidence             5554310           112333221    0135689999999999999999999854

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.84  E-value=1.9e-19  Score=137.68  Aligned_cols=163  Identities=16%  Similarity=0.282  Sum_probs=112.4

Q ss_pred             ceEEEeeceEEec-CCcEEEEEEe--ccC--ceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEE
Q psy15235         23 GKITYFGDTEIME-GAPINISCIL--TIF--EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQ   95 (323)
Q Consensus        23 ~~i~~~~~~~v~~-G~~v~L~C~~--~~~--~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C   95 (323)
                      +.|..+....+.+ |+++.|.|.+  .+.  +.+.|+++|..+......          .....|.|.+++.  +|.|+|
T Consensus         4 P~i~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~----------~~~~~L~i~~~~~~d~G~Y~C   73 (190)
T 2wv3_A            4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN----------ASNMEYRINKPRAEDSGEYHC   73 (190)
T ss_dssp             CEEEECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC----------CSEEEEEESSCCGGGCEEEEE
T ss_pred             CcccccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE----------eccEEEEEecCCcccCEEEEE
Confidence            4455566677777 9999999994  344  789999999877654111          1345666666654  999999


Q ss_pred             EeeccCCccceeeeeee--------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccccccccCcEE---
Q psy15235         96 SSLFIPRMNAITGNYDI--------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITEATELSGRLT---  162 (323)
Q Consensus        96 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~~~~~~~~~~---  162 (323)
                      .+.+. +.......+.+        .+....+..|+.+.|.|.+.+.|   .+.+.|++  ++..+... ....++.   
T Consensus        74 ~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~g~~~~~~-~~~~~~~~~~  148 (190)
T 2wv3_A           74 VYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP---HPEWMWRKKENGVFEEIS-NSSGRFFIIN  148 (190)
T ss_dssp             EEEET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSS---CCEEEEEEEETTEEEECC-CTTSCEEEEE
T ss_pred             EEEeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccC---CCceEEEEcCCCceeeee-cCCCeEEEec
Confidence            99887 44322222222        33344578899999999999988   68999999  67665421 1134443   


Q ss_pred             -eceeEEEEeeee-cCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        163 -QSKDSITIRKTT-VDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       163 -~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                       .....|.|.++. .+|+|.|+|.+ .|..+.  ....+.|.|
T Consensus       149 ~~~~~~L~i~~~~~~~d~G~Y~C~a-~N~~g~--~~~~~~l~V  188 (190)
T 2wv3_A          149 KENYTELNIVNLQITEDPGEYECNA-TNSIGS--ASVSTVLRV  188 (190)
T ss_dssp             CSSEEEEEECSCCTTTSCEEEEEEE-ECSSCE--EEEEEEEEE
T ss_pred             CCCeeEEEEEeccccCCCEEEEEEE-EecCCc--ceeEEEEEE
Confidence             233589999999 79999999999 777433  444444444

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.84  E-value=1.1e-19  Score=139.16  Aligned_cols=155  Identities=18%  Similarity=0.221  Sum_probs=110.7

Q ss_pred             EEeeceEEecCCcEEEEEEec--c-CceEEEEE-cCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeec
Q psy15235         26 TYFGDTEIMEGAPINISCILT--I-FEQVKWQL-NGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLF   99 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~~--~-~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~   99 (323)
                      ..+.+..+.+|++++|.|.+.  + .+.+.|++ +|..+...   ...............|.|.+++.  +|.|+|.+.+
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (191)
T 1epf_A            7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA   83 (191)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCB---SSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCC---CCeEEEEECCCCceEEEEccCCcccCEEEEEEEEc
Confidence            355678899999999999954  3 57999999 77776643   12222222335566777777655  9999999988


Q ss_pred             cCC-ccceeeeee--------eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEE
Q psy15235        100 IPR-MNAITGNYD--------IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSIT  169 (323)
Q Consensus       100 ~~~-~~~~~~~~~--------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~  169 (323)
                      ..+ .......+.        ..+....+..|+.+.|.|.+.+.|   .+.+.|++++..+..  ....++. ..+..|.
T Consensus        84 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~v~W~~~~~~~~~--~~~~~~~~~~~~~L~  158 (191)
T 1epf_A           84 EDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL---PPTIIWKHKGRDVIL--KKDVRFIVLSNNYLQ  158 (191)
T ss_dssp             TTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSS---CCEEEEEETTEEGGG--GCCTTEEECTTSCEE
T ss_pred             CCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCC---CCEEEEEECCEEeec--cCCceEEEecCCeEE
Confidence            763 222222222        234444577899999999999888   689999999988864  1123443 4455899


Q ss_pred             EeeeecCCCeeEEEEEEcCC
Q psy15235        170 IRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       170 i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |.++..+|+|.|+|.| .|.
T Consensus       159 i~~~~~~d~G~Y~C~a-~n~  177 (191)
T 1epf_A          159 IRGIKKTDEGTYRCEG-RIL  177 (191)
T ss_dssp             ETTCCGGGCEEEEEEE-EEG
T ss_pred             ECCCChhhCEEEEEEE-EEe
Confidence            9999999999999999 666

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.84  E-value=1.9e-19  Score=148.71  Aligned_cols=161  Identities=18%  Similarity=0.217  Sum_probs=119.8

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      ...+.+|+.+.|.|......|  .+.+.|++++..+..    ..++.    .....|.|.+++.+|+|.|+|.+ .+..+
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p--~~~v~W~k~~~~i~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~-~n~~g   82 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTP--KSEFSWSKDYVSTED----SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDV-TDTDG   82 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCT--TCCEEEEETTEECTT----CTTEEEEEETTEEEEEESSCCGGGCEEEEEEE-SSSCC
T ss_pred             eEEEecCCeEEEEEEEeCCCC--CcEEEEEECCEECCC----CCCEEEEEeCCEEEEEECcCCccCCEEEEEEE-EeCCC
Confidence            344778999999998864333  689999999999876    45554    34479999999999999999999 77643


Q ss_pred             CCCCceeeeeEEEe------------cceee-ee-ceeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeeeccCCeeeee
Q psy15235        192 NTTPLAQADFDVIM------------KPTAK-LV-ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLS  256 (323)
Q Consensus       192 ~~~~~~~~~l~v~~------------~p~~~-~~-~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~  256 (323)
                      .   ..++.+.|..            +|.+. .+ ....+.+|+.+.|.|.+. +.|.+.+.|++++..+... .++.+.
T Consensus        83 ~---~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~-~~~~~~  158 (312)
T 2y23_A           83 I---ASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG-PKYKMH  158 (312)
T ss_dssp             C---CEEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSS-SSCEEE
T ss_pred             c---EEEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeC-CcEEEE
Confidence            2   2244555542            44333 22 266788999999999998 8899999999999988654 334333


Q ss_pred             cCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ...  .....+|.|.+++.+|+|.|+|.|.|..
T Consensus       159 ~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  189 (312)
T 2y23_A          159 IDR--NTGIIEMFMEKLQDEDEGTYTFQLQDGK  189 (312)
T ss_dssp             EET--TTTEEEEEESCCCGGGCEEEEEEEESSS
T ss_pred             Ecc--CCCEEEEEEccCCcccCEeEEEEEEeCC
Confidence            111  1134679999999999999999998654

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.84  E-value=2.6e-20  Score=146.15  Aligned_cols=186  Identities=17%  Similarity=0.213  Sum_probs=118.2

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc------------cccccCcEE-----------eceeEEEEee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE------------ATELSGRLT-----------QSKDSITIRK  172 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~------------~~~~~~~~~-----------~~~~~l~i~~  172 (323)
                      ...+..|++++|.|.+.+.++.....|.|+|++..+..            ......+..           ..+.+|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            34567899999999998866321235899997654321            000111111           2456799999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccC
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQ  250 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~  250 (323)
                      ++.+|+|.|+|.+ .+..+. .......+.+..+|... .+.......++...+.|.+ .+.|++.+.|++++.......
T Consensus        90 v~~~D~G~Y~C~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~  167 (225)
T 4fmk_A           90 LRVEDEGNYTCEF-ATFPNG-TRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT  167 (225)
T ss_dssp             CCGGGCEEEEEEE-EEETTE-EEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE
T ss_pred             CCHHHCcceEEEE-EeCCCc-ceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc
Confidence            9999999999999 554222 22333344444444433 3334455667788888877 567888999999876654221


Q ss_pred             CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235        251 GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       251 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      . .... ........+.|.|.++..+|+|.|+|.|.|..|.  ......+.|.|...
T Consensus       168 ~-~~~~-~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~--~~~~~~v~l~V~Y~  220 (225)
T 4fmk_A          168 Q-EPGI-QAGTVTIISRYSLVPVGRADGVKVTCRVEHESFE--EPILLPVTLSVRYH  220 (225)
T ss_dssp             E-EECS-STTCEEEEEEEEECCCGGGTTCEEEEEEECTTCS--SCEEEEEECCBTTC
T ss_pred             c-eEEe-cCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCC--eEEEEEEEEEEEEC
Confidence            1 1111 0111113467999999999999999999999876  34556677766543

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.84  E-value=2.6e-20  Score=155.01  Aligned_cols=176  Identities=20%  Similarity=0.234  Sum_probs=120.0

Q ss_pred             eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc-----cccccCcEE---------eceeEEEEeeeecCC
Q psy15235        112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-----ATELSGRLT---------QSKDSITIRKTTVDD  177 (323)
Q Consensus       112 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-----~~~~~~~~~---------~~~~~l~i~~~~~~d  177 (323)
                      ..|....+.+|++++|.|.+.+..|  .+.|.|++++.....     ......++.         .....|.|.+++.+|
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~~~~p--~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D   85 (327)
T 2wng_A            8 QPDKSVSVAAGESAILHCTVTSLIP--VGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPAD   85 (327)
T ss_dssp             CCCSEEEEETTSCEEECCEESCCCS--CCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGG
T ss_pred             cCCCceEEecCCcEEEEEEccCcCC--CceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcccc
Confidence            3566777899999999999998733  679999998764321     000112333         335679999999999


Q ss_pred             CeeEEEEEEcCCCCCC---CCceeeeeEEEecc---eeeeeceeEEeeCCeEEEEEEEecCCCC--cEEEEECCeeeecc
Q psy15235        178 AGQYSCRLIDPKSTNT---TPLAQADFDVIMKP---TAKLVETLTVIEGEKLRLECLVVGSPPP--TVEWRIGNDTYFRS  249 (323)
Q Consensus       178 ~G~y~C~~~~~~~~~~---~~~~~~~l~v~~~p---~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~  249 (323)
                      +|.|+|.+ .+..+..   .......|.|..+|   .+. .+...+.+|+.+.|.|.+.|.|++  .+.|+++|..+...
T Consensus        86 ~G~Y~C~a-~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~  163 (327)
T 2wng_A           86 AGTYYCVK-FRKGSPDTEFKSGAGTELSVRAKPSAPVVS-GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDF  163 (327)
T ss_dssp             CEEEEEEE-EESSTTCEEEEECCCEEEEEEBCCCCCEEE-CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCE
T ss_pred             CeEEEEEe-ecCCCcceeEeecCcEEEEEEecCCCceee-ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccc
Confidence            99999999 5653221   11234567776644   333 234567889999999999988765  89999999887643


Q ss_pred             CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        250 QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ................+.|.|.....+|.|.|+|.|.|..|.
T Consensus       164 ~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          164 QTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             EEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             ccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            322221100001123457888888877889999999998864

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.84  E-value=9.3e-20  Score=140.97  Aligned_cols=159  Identities=14%  Similarity=0.189  Sum_probs=108.8

Q ss_pred             ceEEE-eeceEEecCCcEEEEEEecc--Cc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEee
Q psy15235         23 GKITY-FGDTEIMEGAPINISCILTI--FE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSL   98 (323)
Q Consensus        23 ~~i~~-~~~~~v~~G~~v~L~C~~~~--~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~   98 (323)
                      ..+.. +....+.+|++++|.|.+.+  .+ .+.|+++|..+...             ...+.|......|+|.|+|.+.
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~-------------~~~L~i~~v~~~D~G~Y~C~a~   74 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-------------ASSYFIDAATVDDSGEYRCQTQ   74 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC-------------SSEEEESSCCGGGCEEEEEEET
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC-------------ccEEEEecccccCCEEEEEEeC
Confidence            34443 34478999999999999553  34 49999999877654             2333333334455999999998


Q ss_pred             ccCCccceeeeeee-----CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeee
Q psy15235         99 FIPRMNAITGNYDI-----EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKT  173 (323)
Q Consensus        99 ~~~~~~~~~~~~~~-----~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  173 (323)
                      +..........+..     .+....+.+|+.++|.|.+.+.+|  .+.+.|+++|..+..        ......|.|.++
T Consensus        75 n~~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p--~~~v~W~k~g~~~~~--------~~~~~~L~i~~v  144 (204)
T 3sgj_C           75 LSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA--LHKVTYLQNGKGRKY--------FHHNSDFYIPKA  144 (204)
T ss_dssp             TSBCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCC--CEEEEEEETTEEEEE--------EEECCCEEESSC
T ss_pred             CCcccccEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCC--CceEEEEECCcEeec--------ccCCceEEECcC
Confidence            75444433222221     112245678999999999977654  689999999988743        134568999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK  206 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~  206 (323)
                      ..+|+|.|+|.+ .|.. ....+..+.|.|..+
T Consensus       145 ~~~D~G~Y~C~a-~n~~-~~~~s~~~~l~V~~~  175 (204)
T 3sgj_C          145 TLKDSGSYFCRG-LVGS-KNVSSETVQITITQG  175 (204)
T ss_dssp             CGGGCEEEEEEE-EETT-EEEECCCEEEEEEC-
T ss_pred             CcccCEEEEEEE-EeCC-CceecCcEEEEEeCc
Confidence            999999999999 6632 233455666666653

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.84  E-value=1.5e-20  Score=146.44  Aligned_cols=170  Identities=17%  Similarity=0.266  Sum_probs=114.2

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y  181 (323)
                      ...+.+|++++|.|.+.  +   .+.+.|+++  +.....        ......++.    .....|.|.+++.+|+|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~--~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--S---NNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVY   83 (211)
T ss_dssp             EEEECTTCEEEEEEECC--C---SSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             eEEEcCCCCEEEEEEEC--C---CCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEE
Confidence            66688999999999998  4   679999994  222210        001234444    3456899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEE----ecceeeeec-eeEEeeCCeEEEEEEEecCC--CCcEEEEECCeeeeccCCeee
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVI----MKPTAKLVE-TLTVIEGEKLRLECLVVGSP--PPTVEWRIGNDTYFRSQGRIK  254 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~~~~-~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~~~~~~~  254 (323)
                      .|.+ .+..+.........|.|.    .+|.+.... ...+..|+.++|.|.+.|.+  .+.+.|+++|..+........
T Consensus        84 ~C~~-~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~  162 (211)
T 3tv3_L           84 YCGS-LVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT  162 (211)
T ss_dssp             EEEE-EETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC
T ss_pred             EEEE-ecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCC
Confidence            9999 565321123445566776    456555322 33334799999999998853  468999999988753211111


Q ss_pred             eecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        255 LSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       255 ~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ......+ ....+.|.|.++..+|.|.|+|.|.|..+.
T Consensus       163 ~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~  200 (211)
T 3tv3_L          163 PSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  200 (211)
T ss_dssp             CEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             ceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence            1100111 112467999999999999999999998844

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.84  E-value=1.2e-19  Score=144.77  Aligned_cols=169  Identities=19%  Similarity=0.232  Sum_probs=113.6

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc-------------ccccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT-------------EATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~-------------~~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ....+.+|++++|.|.+.+.++. .+.|.|+|+.  ....             .......|+.      .....|.|.++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFS-SYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEecCCcEEEEEEeccccCC-CceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            44668899999999999886521 3689999842  1110             0011234554      12467999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEec---------------ceee-eeceeEEeeCCeEEEEEEEecCCCCcE
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMK---------------PTAK-LVETLTVIEGEKLRLECLVVGSPPPTV  237 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~---------------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~  237 (323)
                      +.+|+|.|.|.+ .+..+.........|.|...               +.+. .+....+.+|++++|.|.+.+.|.+.+
T Consensus        89 ~~~D~G~Y~C~~-~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v  167 (247)
T 2ghw_B           89 RAEDTAVYYCAR-DRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNL  167 (247)
T ss_dssp             CGGGCEEEEEEE-EETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred             CHHHCEEEEEee-eccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceE
Confidence            999999999999 55411111223345666543               2233 334566889999999999999988899


Q ss_pred             EEEE--CCeeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        238 EWRI--GNDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       238 ~W~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .|++  ++..+.           ....++...  .  .....+|+|.+++.+|+|.|+|.|.|..
T Consensus       168 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~--~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          168 AWYQQKPGQAPRPLIYDASTRATGIPDRFSGS--G--SGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             EEEEECTTSCCEEEEETTTEECTTCCTTEEEE--C--SSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             EEEEECCCCCcEEEEEEeccCCCccCCCEEEe--c--CCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence            9999  554331           012333332  1  1135679999999999999999999865

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.84  E-value=2.7e-21  Score=150.71  Aligned_cols=174  Identities=17%  Similarity=0.282  Sum_probs=114.9

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc--------cccccCcEE----eceeEEEEeeeecCCCe
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE--------ATELSGRLT----QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G  179 (323)
                      |....+.+|++++|.|.+.+.+   .+.+.|+|++  ..+..        ......++.    .....|.|.+++.+|+|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   82 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLP---KNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEA   82 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGG---GSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCS
T ss_pred             CCeEEEeCCCcEEEEEecCCCC---CCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCE
Confidence            5666788999999999987766   5689999853  32210        011234554    24568999999999999


Q ss_pred             eEEEEEEcC-CCCCCCCceeeeeEEE----ecceeee-eceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCC
Q psy15235        180 QYSCRLIDP-KSTNTTPLAQADFDVI----MKPTAKL-VETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQG  251 (323)
Q Consensus       180 ~y~C~~~~~-~~~~~~~~~~~~l~v~----~~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~  251 (323)
                      .|+|.+ .+ ............+.|.    .+|.+.. +....+.+|+.+.|.|.+.|. |+ +.+.|+++|..+.....
T Consensus        83 ~Y~C~~-~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~  161 (212)
T 1nfd_E           83 AYYCLS-SYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVK  161 (212)
T ss_dssp             EEEEEE-EETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCB
T ss_pred             EEEEEE-EcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCee
Confidence            999999 53 2111111223445553    3455543 223334579999999999887 55 79999999988764321


Q ss_pred             eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        252 RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       252 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ........++....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       162 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          162 TTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            1111100001112466999999999999999999998854

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.84  E-value=4.9e-20  Score=139.32  Aligned_cols=159  Identities=13%  Similarity=0.141  Sum_probs=109.4

Q ss_pred             ceeEEecCCcEEEEEEeec--CCCCCCceEEEEE--CCeecccc------ccccCcEE-eceeEEEEeeeecCCCeeEEE
Q psy15235        115 KYKVFEYRVPFTLKCNVTS--PPPGDDYQIVWYK--GNKSITEA------TELSGRLT-QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~--~~~~~~~~i~W~~--~~~~~~~~------~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      .......|++|+|.|....  .+   .+.|.|++  ++..+...      ....+|+. ..+.+|.|.+++.+|+|.|+|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~---~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDD---IDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSS---EEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCc---CCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEE
Confidence            4455778999999995432  23   57999999  88766310      01245554 456689999999999999999


Q ss_pred             EEEcCCCCCCCCceeeeeEEEec---ceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235        184 RLIDPKSTNTTPLAQADFDVIMK---PTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE  260 (323)
Q Consensus       184 ~~~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  260 (323)
                      .+ .+..+.......+.|.|..+   |.+..       .+..+.|.|.+.+.|.+.+.|+++|..+. .           
T Consensus        84 ~~-~n~~g~~~~~~~~~L~V~~~~~~P~i~~-------~~~~v~L~C~~~~~p~~~~~W~~~g~~l~-~-----------  143 (182)
T 1hnf_A           84 SI-YDTKGKNVLEKIFDLKIQERVSKPKISW-------TCINTTLTCEVMNGTDPELNLYQDGKHLK-L-----------  143 (182)
T ss_dssp             EE-EETTSCEEEEEEEEEEEECCCCCCEEEE-------ETTTTEEEEECSSCSSCEEEEEESSCEEE-E-----------
T ss_pred             EE-EeCCCceeEEEEEEEEEcCcCCCCEEEE-------ccCcEEEEeEccCCCCCEEEEEECCEECC-C-----------
Confidence            99 66533322334566777642   33322       34479999999988999999999998872 1           


Q ss_pred             CCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        261 KGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                         ....|.+.. ..+|.|.|+|.|.|..|.    ......+..
T Consensus       144 ---~~~~i~~~~-~~~d~G~Y~C~a~N~~~~----~~s~~~~~c  179 (182)
T 1hnf_A          144 ---SQRVITHKW-TTSLSAKFKCTAGNKVSK----ESSVEPVSC  179 (182)
T ss_dssp             ---ESSCEEEEC-CSCEEEEEEEEEECSSCE----EEEEEEEEE
T ss_pred             ---CCcEEEEec-ccCCCcEEEEEEEeCCCC----cEEcceecC
Confidence               123344433 478999999999999965    555554433

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.84  E-value=6.2e-20  Score=143.02  Aligned_cols=175  Identities=18%  Similarity=0.272  Sum_probs=113.8

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc--------cccccCcEE----eceeEEEEeeeecCCCe
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE--------ATELSGRLT----QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G  179 (323)
                      |....+.+|++++|.|.+.+.+....+.|.|++++  ..+..        ......++.    .....|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            56667889999999999988662112589999853  22210        011234554    23458999999999999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEE----ecceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCe
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVI----MKPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGR  252 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~  252 (323)
                      .|.|.+ .+..+. .......+.|.    .+|.+.. +....+..|+.++|.|.+.|. |++ .+.|+++|..+......
T Consensus        87 ~Y~C~~-~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  164 (212)
T 1q0x_L           87 IYFCAL-WSNNKL-VFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMET  164 (212)
T ss_dssp             EEEEEE-ECSSCE-EECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred             EEEEEE-ecCchh-hcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeec
Confidence            999999 665321 11223455553    3555543 222233468999999999875 443 89999999887533111


Q ss_pred             eeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        253 IKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       253 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .......++. ...+.|.|..+..+|.|.|+|.|.|...
T Consensus       165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          165 TQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH  203 (212)
T ss_dssp             CCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence            1111001111 1346799999999999999999999873

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.84  E-value=2.1e-20  Score=154.20  Aligned_cols=183  Identities=17%  Similarity=0.228  Sum_probs=124.8

Q ss_pred             EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc-------------cccccCcEE-----eceeEEEEeeeecCCCe
Q psy15235        118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE-------------ATELSGRLT-----QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~-------------~~~~~~~~~-----~~~~~l~i~~~~~~d~G  179 (323)
                      .+..|++++|.|.+.+.++  .+.|+|+|++.....             ...+..|+.     ....+|.|.+++.+|+|
T Consensus        10 tv~~G~~v~L~C~v~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A           10 TAVWGKNVSLKCLIEVNET--ITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             EEETTSCEEECCBCCCSSC--EEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             EEEcCCcEEEEEEecCCCC--CcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            4567999999999876553  568999996543211             111223332     23467999999999999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEEecceee---eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeee
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVIMKPTAK---LVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKL  255 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~  255 (323)
                      .|+|.+ .+.. .........+.+...|.+.   .+.......|+.+.|.|.+ .|.|.+.+.|++++..+.......  
T Consensus        88 ~Y~C~a-~n~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~--  163 (308)
T 4fom_A           88 KYICKA-VTFP-LGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSF--  163 (308)
T ss_dssp             EEEEEE-EETT-TEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEEC--
T ss_pred             EEEEEE-eeCC-CcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCccccccccee--
Confidence            999999 4431 2234455566666554332   3334445668899999987 688999999999998765321111  


Q ss_pred             ecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        256 SEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       256 ~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      .  .......+.|.|..+..+|.|.|+|.|.|..|.  ......+.|.|..+|..
T Consensus       164 ~--~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~--~~~~~~~~l~V~~~P~~  214 (308)
T 4fom_A          164 P--NETATIISQYKLFPTRFARGRRITCVVKHPALE--KDIRYSFILDIQYAPEV  214 (308)
T ss_dssp             T--TSCEEEEEEEEECCCGGGTTCEEEEEEECTTCS--SCEEEEEECCCCEEEEE
T ss_pred             e--eecccccccceEEeeeecCCccEEEEEEccCCC--CceEEeEEEEEecCCee
Confidence            0  111123567999999999999999999999876  44566777777766654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.84  E-value=8.6e-20  Score=142.29  Aligned_cols=173  Identities=17%  Similarity=0.278  Sum_probs=115.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E-----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|.+.+.+   .+.+.|+|..  ....   .     ......++.    .....|.|.+++.+|+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3r06_A            7 SPSSLPASLGDRVTINCQASQDI---SNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDI   83 (213)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCCEEEecCCCcEEEEEEeCCCc---CceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccC
Confidence            45666788999999999999986   7899999832  1110   0     011234444    3456899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEE---Eecceeee-eceeEEeeCCeEEEEEEEecCCC--CcEEEEECCeeeeccC-C
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDV---IMKPTAKL-VETLTVIEGEKLRLECLVVGSPP--PTVEWRIGNDTYFRSQ-G  251 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v---~~~p~~~~-~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~-~  251 (323)
                      |.|.|.+ .+..+. .......|.|   ..+|.+.. +....+..|+.+.|.|.+.|.|+  +.+.|+++|..+.... .
T Consensus        84 G~Y~C~~-~~~~~~-~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  161 (213)
T 3r06_A           84 GSYYCQQ-YYNYPW-TFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ  161 (213)
T ss_dssp             SEEEEEE-CSSSSC-EECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred             EEEEEec-ccCCce-EEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe
Confidence            9999999 665321 2233445666   34565553 33333456888999999987654  3899999998875321 1


Q ss_pred             eeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        252 RIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       252 ~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .........+ ....+.|.|.....+|.|.|+|.|.|...
T Consensus       162 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          162 SVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS  201 (213)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             ccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence            1111110111 12346788999999999999999999873

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.84  E-value=1.2e-19  Score=136.99  Aligned_cols=156  Identities=15%  Similarity=0.224  Sum_probs=107.5

Q ss_pred             CceEEE-eeceEEecCCcEEEEEEecc--Cce-EEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEE
Q psy15235         22 DGKITY-FGDTEIMEGAPINISCILTI--FEQ-VKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQ   95 (323)
Q Consensus        22 ~~~i~~-~~~~~v~~G~~v~L~C~~~~--~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C   95 (323)
                      .+.+.. +....+.+|++++|.|.+..  .+. +.|+++|..+...             ..  .|.|.++  .|+|.|+|
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~-------------~~--~L~i~~~~~~d~G~Y~C   71 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------------AS--SYFIDAATVNDSGEYRC   71 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-------------CS--EEEESSCCGGGCEEEEE
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC-------------ce--EEEEeCCCcccCEEEEE
Confidence            344443 44568999999999999543  344 8999998776542             33  4555544  45999999


Q ss_pred             EeeccCCccceeeeee-----eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEE
Q psy15235         96 SSLFIPRMNAITGNYD-----IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI  170 (323)
Q Consensus        96 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i  170 (323)
                      .+.+..........+.     ..+....+.+|+.++|.|.+.+.+|  .+.+.|+++|..+..        ......|.|
T Consensus        72 ~~~n~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~k~g~~~~~--------~~~~~~L~i  141 (175)
T 1fnl_A           72 QTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA--LHKVTYLQNGKDRKY--------FHHNSDFHI  141 (175)
T ss_dssp             ECSSSCCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCC--CEEEEEEETTEEEEE--------EEECCCEEE
T ss_pred             EeeCCcccccEEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCC--ceEEEEEECCeEccC--------CCCCCEEEE
Confidence            9987655443222222     1222244778999999999988774  469999999988753        124578999


Q ss_pred             eeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      .+++.+|+|.|+|.+ .|..+ ...+..+.|.|.
T Consensus       142 ~~v~~~d~G~Y~C~a-~n~~~-~~~s~~~~l~V~  173 (175)
T 1fnl_A          142 PKATLKDSGSYFCRG-LVGSK-NVSSETVNITIT  173 (175)
T ss_dssp             SSCCGGGCEEEEEEE-EETTE-EEECCCEEEEEE
T ss_pred             cccChhhCeEEEEEE-EcCCC-CccCccEEEEEe
Confidence            999999999999999 66422 223445555554

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.83  E-value=5.3e-20  Score=139.05  Aligned_cols=157  Identities=17%  Similarity=0.214  Sum_probs=108.6

Q ss_pred             EeeceEEecCCcEEEEEEecc--C-ceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCc
Q psy15235         27 YFGDTEIMEGAPINISCILTI--F-EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRM  103 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~~--~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~  103 (323)
                      .+....+.+|++++|.|.+.+  . ..+.|++++..+...             ...+.|......|+|.|+|.+.+....
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~~~~~~s   76 (176)
T 1f2q_A           10 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------------NSSLNIVNAKFEDSGEYKCQHQQVNES   76 (176)
T ss_dssp             ESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-------------SSEEEECSCCGGGCEEEEEECTTSSCC
T ss_pred             CCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC-------------ceEEEEeccceecCEEEEEEcCCcccc
Confidence            345568999999999999543  3 369999998776543             333334334445599999999876655


Q ss_pred             cceeeeeee-----CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCC
Q psy15235        104 NAITGNYDI-----EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDA  178 (323)
Q Consensus       104 ~~~~~~~~~-----~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~  178 (323)
                      ......+..     .+....+.+|+.++|.|.+.+.+|  .+.+.|+++|..+..    .    .....|.|.++..+|+
T Consensus        77 ~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~~~----~----~~~~~L~i~~v~~~d~  146 (176)
T 1f2q_A           77 EPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWD--VYKVIYYKDGEALKY----W----YENHNISITNATVEDS  146 (176)
T ss_dssp             CCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCC--EEEEEEEETTEECCS----C----CCSSEEEESSCCGGGC
T ss_pred             ccEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCC--ceEEEEEECCEEEee----e----cCCCeEEECCCCcccC
Confidence            433322221     122234678999999999965443  679999999988753    1    2356899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEecce
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIMKPT  208 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~  208 (323)
                      |.|+|.+ .|.. ....+..+.|.|..+|.
T Consensus       147 G~Y~C~a-~n~~-~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          147 GTYYCTG-KVWQ-LDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEEEEE-EETT-EEEECCCEEEEEECSCC
T ss_pred             EEEEEEE-EeCC-cceEecCEEEEEecCCC
Confidence            9999999 6642 22345567777776663

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.83  E-value=3.1e-20  Score=146.64  Aligned_cols=172  Identities=19%  Similarity=0.329  Sum_probs=116.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecc---------ccccccCcE-----------EeceeEEEEee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT---------EATELSGRL-----------TQSKDSITIRK  172 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~---------~~~~~~~~~-----------~~~~~~l~i~~  172 (323)
                      .|....+.+|+++.|.|.+.+.++  .+.+.|++++....         ....+..++           ......|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~   83 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHD--HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAE   83 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCS--EEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESS
T ss_pred             CCCcEEEEcCCCEEEecccCCCCC--ceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcc
Confidence            455566889999999999998772  27999998654321         000011111           12234599999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc---eeee-eceeEEeeCCeE-EEEEEE-ecCCCCcEEEEECCeee
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP---TAKL-VETLTVIEGEKL-RLECLV-VGSPPPTVEWRIGNDTY  246 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p---~~~~-~~~~~~~~g~~~-~l~C~~-~g~p~~~~~W~~~~~~~  246 (323)
                      ++.+|+|.|+|.+ .+.. .......+.|.|..+|   .+.. +....+.+|+.+ .|.|.+ .+.|.|.+.|++++..+
T Consensus        84 v~~~D~G~Y~C~~-~~~~-~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~  161 (231)
T 2pet_A           84 AQVGDERDYVCVV-RAGA-AGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRL  161 (231)
T ss_dssp             CCGGGCEEEEEEE-ECGG-GCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEEC
T ss_pred             cCcccCceEEEEE-EecC-CCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccC
Confidence            9999999999999 6653 1345666777777664   3332 223445688888 999999 89999999999999988


Q ss_pred             eccC---CeeeeecC---CCCC--CcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        247 FRSQ---GRIKLSEH---PEKG--TANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       247 ~~~~---~~~~~~~~---~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      ....   .++.+...   ...+  ...+.|.|.....+|.|.|+|.|.|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          162 EVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             ccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            6544   23333210   0011  12367889866666799999999995

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.83  E-value=2e-19  Score=139.99  Aligned_cols=156  Identities=19%  Similarity=0.257  Sum_probs=111.8

Q ss_pred             ecCCcEEEEEEec---cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCCccceee
Q psy15235         34 MEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPRMNAITG  108 (323)
Q Consensus        34 ~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~~~~~~~  108 (323)
                      .+|+.+.|.|.+.   +.+.++|+++|..+...     ..+..........|.|.+++.  +|.|+|.+.+..+......
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~-----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~   89 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-----DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV   89 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCC-----SSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCC-----CeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEE
Confidence            4777888888844   46899999999887764     112233445566677777654  9999999998665543222


Q ss_pred             eee-----------------------------eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC
Q psy15235        109 NYD-----------------------------IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG  159 (323)
Q Consensus       109 ~~~-----------------------------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~  159 (323)
                      .+.                             ..+....+..|+.+.|.|.+.+.|   .+.+.|++++..+..    ..
T Consensus        90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p---~p~v~W~~~~~~~~~----~~  162 (212)
T 2r15_A           90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP---PPEVSWLKNEKALAQ----TD  162 (212)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSS---CCEEEEEETTEEECC----CS
T ss_pred             EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCC---CceEEEEECCeECcc----CC
Confidence            221                             134455678899999999999988   789999999998876    44


Q ss_pred             cEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        160 RLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       160 ~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      ++.     .....|.|.+++.+|+|.|+|.| .|..+  .....+.|.|.
T Consensus       163 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~N~~g--~~~~~~~l~V~  209 (212)
T 2r15_A          163 HCNLKFEAGRTAYFTINGVSTADSGKYGLVV-KNKYG--SETSDFTVSVF  209 (212)
T ss_dssp             SEEEEEETTTEEEEEESSCCGGGCEEEEEEE-EETTE--EEEEEEEEEEE
T ss_pred             CEEEEEcCCCEEEEEEcCcchHHCeEEEEEE-EcCCC--cEEEEEEEEEE
Confidence            444     22358999999999999999999 77743  34555555554

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.83  E-value=2.6e-19  Score=145.30  Aligned_cols=169  Identities=17%  Similarity=0.260  Sum_probs=113.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe-----eccc-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-----SITE-----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~-----~~~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|.+.+.+   .+.+.|+|++.     .+..     ......++.    .....|.|.+++.+|+
T Consensus        18 ~p~~~~v~~G~~v~L~C~~~~~p---~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   94 (276)
T 3auv_A           18 SPSSLSASVGDRVTITCRASQDV---STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDF   94 (276)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCCeEEEcCCCCEEEEeEcCCCC---CCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhC
Confidence            45666788999999999998877   67999998542     1110     001234554    2345899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEecc---------------eeeeeceeEEeeCCeEEEEEEEecCC--CCcEEEEE
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIMKP---------------TAKLVETLTVIEGEKLRLECLVVGSP--PPTVEWRI  241 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p---------------~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~  241 (323)
                      |.|.|.+ .+..+. .......|.|...|               .+..+....+.+|++++|.|.+.+.|  .+.+.|++
T Consensus        95 G~Y~C~~-~n~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k  172 (276)
T 3auv_A           95 ATYYCQQ-HYTTPP-TFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVR  172 (276)
T ss_dssp             EEEEEEE-CSSSSC-CCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             EEEEEEE-ecCCcc-cccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEE
Confidence            9999999 665322 12223455555432               23344567788999999999999876  47899999


Q ss_pred             CC--eeee----------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        242 GN--DTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       242 ~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      ++  ....                ....++.+...  .......|+|.+++.+|+|.|+|.|.|.
T Consensus       173 ~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          173 QAPGKCLEWVAGITPAGGYTYYADSVKGRFTISAD--TSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             ECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEE--GGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             cCCCCCcEEEEEEeccCCccccccccCCcEEEEec--CCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            63  2110                01234443310  0112458999999999999999999998

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.83  E-value=5.2e-20  Score=142.06  Aligned_cols=163  Identities=17%  Similarity=0.150  Sum_probs=112.8

Q ss_pred             EeeceEEecCCcEEEEEE---eccC-ceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeecc
Q psy15235         27 YFGDTEIMEGAPINISCI---LTIF-EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFI  100 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~---~~~~-~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~  100 (323)
                      .+.++.+.+|+++.|.|.   ..+. +.++|++++..+.... ....  ......+  .|.|.++  .|+|.|+|.+.+.
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~-~~~~--~~~~~~~--~L~i~~v~~~d~G~Y~C~~~~~   88 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITM-DKRR--FVSQTNG--NLYIANVEASDKGNYSCFVSSP   88 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCC-SSSE--EECTTTC--CEEESSCCGGGCEEEEEEEEEG
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeee-CCCe--EEEcCCC--eEEECcCCcccCeEEEEEEEec
Confidence            346678999999999999   4566 8999999998775421 1111  1111233  3555554  4599999999875


Q ss_pred             CCccc------------------eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235        101 PRMNA------------------ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT  162 (323)
Q Consensus       101 ~~~~~------------------~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~  162 (323)
                      .+...                  ..+.+...+....+..|+.++|.|.+.+.|   .+.+.|++++..+..    ..++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~v~W~~~~~~~~~----~~~~~  161 (201)
T 3s97_C           89 SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNP---VPDIRWRKVLEPMPS----TAEIS  161 (201)
T ss_dssp             GGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEES---CCEEEEEETTBCCCT----TCEEE
T ss_pred             CCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCC---CCceEEEeCCCcCCC----ceeec
Confidence            43321                  112233333345577899999999999987   689999999987765    44444


Q ss_pred             eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        163 QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      .....|.|.++..+|+|.|+|.+ .|..+  .....+.|.|.
T Consensus       162 ~~~~~L~i~~v~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~  200 (201)
T 3s97_C          162 TSGAVLKIFNIQLEDEGIYECEA-ENIRG--KDKHQARIYVQ  200 (201)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEE-EETTE--EEEEEEEEEEE
T ss_pred             CCCCEEEEccCChhhCEEEEEEE-EecCC--ceeeeEEEEEe
Confidence            55678999999999999999999 77633  33445555543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.83  E-value=1e-19  Score=142.24  Aligned_cols=176  Identities=15%  Similarity=0.277  Sum_probs=112.7

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc--------cccccCcEE----eceeEEEEeeeecCCCe
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE--------ATELSGRLT----QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G  179 (323)
                      |....+.+|++++|.|.+.+.++. .+.+.|+|++  ..+..        ......++.    .....|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIG-NNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGG-GSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCC-CCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence            556678899999999995443311 4689999953  22110        011234554    23558999999999999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEE---ecceeee-eceeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeeeecc-CCe
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVI---MKPTAKL-VETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRS-QGR  252 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~---~~p~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~-~~~  252 (323)
                      .|.|.+ .+..+.........|.|.   .+|.+.. ++......|+.++|.|.+.| .|++ .+.|+++|..+... ...
T Consensus        86 ~Y~C~~-~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~  164 (216)
T 2xzc_L           86 DYYCGT-WDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQES  164 (216)
T ss_dssp             EEEEEE-ECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEE
T ss_pred             EEEEEE-EeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEe
Confidence            999999 665331112223455554   3455543 22222336889999999987 4554 89999999887533 111


Q ss_pred             eeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        253 IKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       253 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .......++. ...+.|.|..+..+|+|.|+|.|.|....
T Consensus       165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          165 VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            1111001110 12458999999999999999999998844

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.83  E-value=1.2e-19  Score=150.12  Aligned_cols=190  Identities=18%  Similarity=0.209  Sum_probs=127.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCC--CceEEEEECCeeccc---------cccccCcEE---------eceeEEEEee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGD--DYQIVWYKGNKSITE---------ATELSGRLT---------QSKDSITIRK  172 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~--~~~i~W~~~~~~~~~---------~~~~~~~~~---------~~~~~l~i~~  172 (323)
                      .|....+..|++++|.|.+.+.++..  ...|.|+|++.....         ......++.         ..+.+|.|.+
T Consensus         6 ~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~   85 (313)
T 4fqp_A            6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG   85 (313)
T ss_dssp             CCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred             CCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence            45555577899999999998765310  125999998754321         001122222         2346799999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccC
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQ  250 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~  250 (323)
                      ++.+|+|.|+|.+..+.  .......+.|.+..+|.+. ......+..++.+.+.|.+ .+.|.+.+.|++++..+....
T Consensus        86 v~~~D~G~Y~C~v~~~~--~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~  163 (313)
T 4fqp_A           86 LRVEDEGNYTCLFVTFP--QGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTS  163 (313)
T ss_dssp             CCGGGCEEEEEEEECSS--SCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEE
T ss_pred             CChhhCEEEEEEEeecc--CcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccc
Confidence            99999999999984333  2334555666666666554 3334556678889999988 578999999999988765322


Q ss_pred             CeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        251 GRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       251 ~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      . ....  ..+ ....+.|.|.....+|+|.|+|.|.|..+.  ......+.|.|..+|.
T Consensus       164 ~-~~~~--~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~--~~~~~~~~l~V~~~P~  218 (313)
T 4fqp_A          164 Q-VPGF--LSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFE--KPQLLTVNLTVYYPPE  218 (313)
T ss_dssp             E-EECS--STTCEEEEEEEEECCCGGGTTCEEEEEEECTTSS--SCEEEEEECCBCEEEE
T ss_pred             e-eeee--cccccccceeeeecccccccCeeEEEEEEccCcC--ccceeeeecccccCCc
Confidence            1 1111  111 112467999999999999999999998866  4456666776765554

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.83  E-value=6.7e-20  Score=143.55  Aligned_cols=173  Identities=18%  Similarity=0.256  Sum_probs=111.4

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      +....+.+|++++|.|.+.+.+.. .+.+.|+|+  +..+..             ...+.+|+.      .....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFT-NYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCCeEecCCCcEEEEEEEeCcccc-cceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            445568899999999999876411 478999996  332210             011245554      1246899999


Q ss_pred             eecCCCeeEEEEEEcCCCCCC--CCceeeeeEEEec----ceee-eeceeEEeeCCeEEEEEEEec-CCCC-cEEEEECC
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNT--TPLAQADFDVIMK----PTAK-LVETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGN  243 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~--~~~~~~~l~v~~~----p~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~  243 (323)
                      ++.+|+|.|.|.+ .+..+..  .......|.|...    |.+. .++...+.+|+.+.|.|.+.| +|.| .+.|++++
T Consensus        86 v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g  164 (219)
T 1c1e_H           86 LKNEDMATYFCAR-GTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (219)
T ss_dssp             CCGGGCEEEEEEE-EETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCcccCEEEEEEE-eccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence            9999999999999 5553111  1223445666542    4443 232334668999999999988 8988 99999998


Q ss_pred             eeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ..+..........  .......+.|+|.... .|.|.|+|.|.|..|.
T Consensus       165 ~~~~~~~~~~~~~--~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~  209 (219)
T 1c1e_H          165 LSSGVHTFPAVLQ--SDLYTLSSSVTVPSSP-RPSETVTCNVAHPASS  209 (219)
T ss_dssp             BCTTEEECCCEES--SSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGT
T ss_pred             cccceEecCCccc--CCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCC
Confidence            7642110000000  1011134679995444 4669999999999854

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.83  E-value=2.5e-19  Score=142.01  Aligned_cols=174  Identities=14%  Similarity=0.270  Sum_probs=115.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E-----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|.+.+.+   .+.+.|+|+.  ....   .     ......++.    .....|.|.+++.+|+
T Consensus        30 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  106 (237)
T 3sob_L           30 SPSSLSASVGDRVTITCRASQDV---STAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDF  106 (237)
T ss_dssp             ECSEEEEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCCeEEEeCCCcEEEEEecCCCC---CceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhC
Confidence            45566788999999999999886   6899999842  1110   0     011134444    3567899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEE---ecceeee-eceeEEeeCCeEEEEEEEecC-C-CCcEEEEECCeeeeccC-C
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVI---MKPTAKL-VETLTVIEGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQ-G  251 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~---~~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~-~  251 (323)
                      |.|.|.+ .+..+. .......+.|.   .+|.+.. +....+..|+.++|.|.+.+. | .+.+.|+++|..+.... .
T Consensus       107 G~Y~C~~-~~~~~~-~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~  184 (237)
T 3sob_L          107 ATYYCQQ-SYTTPP-TFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE  184 (237)
T ss_dssp             EEEEEEE-CSSSSC-EECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred             eEEEEee-ccCCce-EEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceee
Confidence            9999999 665321 12233355553   3455542 222334468899999999874 5 57999999998875321 1


Q ss_pred             eeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        252 RIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       252 ~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .........+ ....+.|.|.....+|.|.|+|.|.|....
T Consensus       185 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          185 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence            1111110111 123467999999999999999999999844

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.83  E-value=8.1e-20  Score=147.83  Aligned_cols=199  Identities=14%  Similarity=0.201  Sum_probs=112.1

Q ss_pred             ccCcceEEEeeccCCcccee--eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc---cc------
Q psy15235         88 ILESGYVQSSLFIPRMNAIT--GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT---EA------  154 (323)
Q Consensus        88 ~~~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~---~~------  154 (323)
                      .+.+.|.|.+.+..+.....  ..+...+....+.+|++++|.|.+.+ +   .+.+.|||.  +....   ..      
T Consensus         6 ~~~~~y~~~~~~~~g~~~~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~k~~~~~~~~~~~~~~~~~~~   81 (270)
T 3qib_D            6 ADLIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-G---HPVVFWYQQNKNNEFKFLINFQNQEVL   81 (270)
T ss_dssp             ----------------------CCCEEECSEEEEETTSCEEEEEECCT-T---CCEEEEEEECTTCCEEEEEEEETTEEE
T ss_pred             hhHHHHHHHHhccCCccccccceeEEeCCCeEEEcCCCCEEEEEEecC-C---CceEEEEEECCCCCcEEEEEECCCCce
Confidence            34789999998765543322  22333566677889999999999865 4   579999982  21110   00      


Q ss_pred             --ccccC-cEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCC--CCCCceeeeeEEEe------cceeee--eceeE
Q psy15235        155 --TELSG-RLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKST--NTTPLAQADFDVIM------KPTAKL--VETLT  216 (323)
Q Consensus       155 --~~~~~-~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~------~p~~~~--~~~~~  216 (323)
                        ....+ |+.     .....|.|.+++.+|+|.|.|.+ .+...  .........+.|..      +|.+.+  +....
T Consensus        82 ~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~  160 (270)
T 3qib_D           82 QQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCAS-SLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAE  160 (270)
T ss_dssp             EECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEE-ESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHH
T ss_pred             ecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEE-ecCCCccceEECCcEEEEEccccccccCCceEEECCCccc
Confidence              00011 443     23568999999999999999999 54311  11122334566654      454432  22223


Q ss_pred             EeeCCeEEEEEEEec-CCCC-cEEEEECCeeeeccCCeee-----eecCCCC-CCcceeEEEeecCcCC-CeEEEEEEee
Q psy15235        217 VIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRSQGRIK-----LSEHPEK-GTANSVLQIDEATMAD-RGNYYCHGNN  287 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~L~i~~v~~~d-~G~y~C~a~n  287 (323)
                      +..|+.++|.|.+.| .|.+ .+.|+++|..+........     .....++ ....+.|.|.....+| .|.|+|.|.|
T Consensus       161 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~  240 (270)
T 3qib_D          161 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQF  240 (270)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEE
T ss_pred             cccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEe
Confidence            445999999999988 6666 7999999988753211100     0000001 1123678898888888 9999999999


Q ss_pred             cccC
Q psy15235        288 VATR  291 (323)
Q Consensus       288 ~~g~  291 (323)
                      ....
T Consensus       241 ~~l~  244 (270)
T 3qib_D          241 YGLS  244 (270)
T ss_dssp             CCBC
T ss_pred             cCCC
Confidence            8754

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.82  E-value=1.6e-19  Score=135.44  Aligned_cols=151  Identities=14%  Similarity=0.144  Sum_probs=107.3

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------cccccCcEE--eceeEEEEeeeecCCCeeEEEEE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------ATELSGRLT--QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      ...+..|++|+|.|.+.. +   .+.|.|++++..+..        ...+.+|+.  ..+.+|.|.+++.+|+|.|.|.+
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~---~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~   79 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-P---LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES   79 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-C---CSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEEC
T ss_pred             EEEEEcCCCEEEcCCCCC-C---cceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEE
Confidence            345778999999998843 4   689999998865432        012344554  35678999999999999999999


Q ss_pred             EcCCCCCCCCceeeeeEEEecc---eeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCC
Q psy15235        186 IDPKSTNTTPLAQADFDVIMKP---TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG  262 (323)
Q Consensus       186 ~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  262 (323)
                       .+..+    ...+.|.|..++   .+...       .....|.|.+.+.|.|.+.|++++..+...             
T Consensus        80 -~n~~~----~~~~~L~V~~~~~~p~i~~~-------~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~-------------  134 (171)
T 1ccz_A           80 -PNITD----TMKFFLYVLEMVSKPMIYWE-------CSNATLTCEVLEGTDVELKLYQGKEHLRSL-------------  134 (171)
T ss_dssp             -TTCCS----CEEEEEEEECCCCCCEEEEE-------TTTTEEEEECSSCSSCEEEEEETTEEEEEE-------------
T ss_pred             -eCCCC----cEEEEEEEECcCCCCEEEEe-------cCCcEEEEEeCCCCCcEEEEEECCEECcCC-------------
Confidence             76633    567777777642   33221       111379999998899999999999887532             


Q ss_pred             CcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEE
Q psy15235        263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV  302 (323)
Q Consensus       263 ~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l  302 (323)
                       ....|.+.  ...|.|.|+|.|.|..|.    ....+.|
T Consensus       135 -~~~~l~~~--~~~~~g~Y~C~a~N~~~~----~~~~~~l  167 (171)
T 1ccz_A          135 -RQKTMSYQ--WTNLRAPFKCKAVNRVSQ----ESEMEVV  167 (171)
T ss_dssp             -SSSEEEEE--CSCCSSCEEEEEEETTEE----EEEEECC
T ss_pred             -cceEEEEe--ccCCCceEEEEEEcccCc----ccceeEE
Confidence             12334443  367899999999999965    4554444

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.82  E-value=9.9e-20  Score=146.18  Aligned_cols=168  Identities=17%  Similarity=0.215  Sum_probs=112.5

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc------------cccccCcEE------eceeEEEEeeeec
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE------------ATELSGRLT------QSKDSITIRKTTV  175 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~------------~~~~~~~~~------~~~~~l~i~~~~~  175 (323)
                      ...+.+|++++|.|.+.+.+.. .+.+.|+|+  +..+..            ......|+.      .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            9 PGLVRPSETLSLTCTVSGFSLT-SFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CSEECTTSEEEEEEEEESSCTT-TSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CccccCCceEEEEEEEecccCC-CccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            3467899999999999886411 478999985  221110            011234554      1246899999999


Q ss_pred             CCCeeEEEEEEcCCCC-------CCCCceeeeeEEEecc---------------eee-eeceeEEeeCCeEEEEEEEecC
Q psy15235        176 DDAGQYSCRLIDPKST-------NTTPLAQADFDVIMKP---------------TAK-LVETLTVIEGEKLRLECLVVGS  232 (323)
Q Consensus       176 ~d~G~y~C~~~~~~~~-------~~~~~~~~~l~v~~~p---------------~~~-~~~~~~~~~g~~~~l~C~~~g~  232 (323)
                      +|+|.|.|.+ .+..+       .........|.|...+               .+. .+....+.+|++++|.|.+.+.
T Consensus        88 ~DsG~Y~C~a-~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  166 (257)
T 1f3r_B           88 DDTGTYYCTR-DLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN  166 (257)
T ss_dssp             TCCEEEEEEE-ESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred             ccCEEEEEEE-cccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence            9999999999 66532       0011123456666532               222 2335568899999999999999


Q ss_pred             CCCcEEEEE--CCeeeec-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        233 PPPTVEWRI--GNDTYFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       233 p~~~~~W~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      |.+.+.|++  ++..+..           ...++....    ......|+|.+++.+|+|.|+|.|.|..
T Consensus       167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG----SGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----EBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec----CCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            888999999  5543310           012333220    0135689999999999999999999964

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=139.00  Aligned_cols=164  Identities=23%  Similarity=0.351  Sum_probs=107.4

Q ss_pred             EEEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeecc
Q psy15235         25 ITYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFI  100 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~  100 (323)
                      +..+.+..+.+|+++.|.|.+  .+.+.+.|++++..+.... ..+..  . ...+.  |.|.++  .|+|.|+|.+.+.
T Consensus         6 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~--~-~~~~~--L~i~~~~~~d~G~Y~C~~~~~   79 (189)
T 2v5t_A            6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS-DNRFA--M-LANNN--LQILNINKSDEGIYRCEGRVE   79 (189)
T ss_dssp             EECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCC-CTTEE--E-CTTSC--EEETTCCGGGCEEEEEEEEET
T ss_pred             eccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceecc-CCeEE--E-ecCCC--EEEeeCCHhHCcEEEEEEEEc
Confidence            345677889999999999994  4667999999988776531 11111  1 11333  555554  4599999999876


Q ss_pred             CCccce----------eeeeeeCCc--eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--ecee
Q psy15235        101 PRMNAI----------TGNYDIEPK--YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKD  166 (323)
Q Consensus       101 ~~~~~~----------~~~~~~~~~--~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~  166 (323)
                      .+....          .+.+...+.  ...+..|+.+.|.|.+.+.|   .+.+.|+++|..+..    ..++.  ....
T Consensus        80 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p---~~~v~W~~~g~~~~~----~~~~~~~~~~~  152 (189)
T 2v5t_A           80 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP---EPAISWFRNGKLIEE----NEKYILKGSNT  152 (189)
T ss_dssp             TTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEES---CCEEEEEETTEECCC----SSSEEEETTTT
T ss_pred             CCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCC---CCeEEEEECCEECcC----CCcEEEecCCC
Confidence            543211          111111111  23456799999999999887   679999999998876    44443  4467


Q ss_pred             EEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        167 SITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       167 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      .|.|.++..+|+|.|+|.+ .|..+.  ....+.|.|.
T Consensus       153 ~L~i~~~~~~d~G~Y~C~a-~n~~g~--~~~~~~l~V~  187 (189)
T 2v5t_A          153 ELTVRNIINSDGGPYVCRA-TNKAGE--DEKQAFLQVF  187 (189)
T ss_dssp             EEEECSCCGGGCEEEEEEE-EETTEE--EEEEEEEEEE
T ss_pred             EEEEcCCChhhCeeEEEEE-EeCCCc--eeEEEEEEEE
Confidence            8999999999999999999 777433  3444455443

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.82  E-value=4.3e-19  Score=142.41  Aligned_cols=172  Identities=17%  Similarity=0.259  Sum_probs=113.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCC-CCCCceEEEEECC--eeccc--------cccccCcEE----eceeEEEEeeeecCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPP-PGDDYQIVWYKGN--KSITE--------ATELSGRLT----QSKDSITIRKTTVDD  177 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~-~~~~~~i~W~~~~--~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d  177 (323)
                      .|....+.+|++++|.|.+.+.. +  .+.+.|+|+.  .....        .....+++.    .....|.|.+++.+|
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~--~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIG--SNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSED   85 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTT--TSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCC--CceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhh
Confidence            34456788999999999998762 2  6799999842  11110        001234544    234589999999999


Q ss_pred             CeeEEEEEEcCCCC-CCCCceeeeeEEEecc---------------------eeeeeceeEEeeCCeEEEEEEEecCC--
Q psy15235        178 AGQYSCRLIDPKST-NTTPLAQADFDVIMKP---------------------TAKLVETLTVIEGEKLRLECLVVGSP--  233 (323)
Q Consensus       178 ~G~y~C~~~~~~~~-~~~~~~~~~l~v~~~p---------------------~~~~~~~~~~~~g~~~~l~C~~~g~p--  233 (323)
                      +|.|.|.+ .+..+ .........|.|..++                     .+..+....+.+|++++|.|.+.+.|  
T Consensus        86 sG~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~  164 (256)
T 3ux9_B           86 EADYYCQV-RDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFS  164 (256)
T ss_dssp             CEEEEEEE-EETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGG
T ss_pred             CEEEEEEE-EECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccc
Confidence            99999999 55321 1122234456665543                     34445556688999999999998876  


Q ss_pred             CCcEEEEEC--Ceeee----------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        234 PPTVEWRIG--NDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       234 ~~~~~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.+.|+++  +..+.                ....++.+...  ......+|+|.+++.+|+|.|+|.|.|..
T Consensus       165 ~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          165 SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRD--NSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             GSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEec--CCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            678999986  32221                01124444321  11235679999999999999999999963

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.82  E-value=3.4e-19  Score=141.36  Aligned_cols=170  Identities=19%  Similarity=0.303  Sum_probs=112.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-----------cccccCcEE-----eceeEEEEeeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-----------ATELSGRLT-----QSKDSITIRKTT  174 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-----------~~~~~~~~~-----~~~~~l~i~~~~  174 (323)
                      .|....+.+|++++|.|. .+.+   .+.|.|+|+  +.....           ......++.     .....|.|.+++
T Consensus         6 ~p~~~~v~~G~~v~L~C~-~~~~---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            6 SPRNKVAVTGGKVTLSCN-QTNN---HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             ECSEEEEETTCCEEEEEE-ECSC---CSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             CccceEEeCCCEEEEEee-cCCC---CccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            455667889999999999 6655   689999995  211100           011133443     234589999999


Q ss_pred             cCCCeeEEEEEEcCCCCC---CCCceeeeeEEEecc------------eee-eeceeEEeeCCeEEEEEEEecCCCCcEE
Q psy15235        175 VDDAGQYSCRLIDPKSTN---TTPLAQADFDVIMKP------------TAK-LVETLTVIEGEKLRLECLVVGSPPPTVE  238 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~~---~~~~~~~~l~v~~~p------------~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~  238 (323)
                      .+|+|.|.|.+ .+..+.   ........|.|...+            .+. .+....+.+|++++|.|.+.+.|.+.+.
T Consensus        82 ~~DsG~Y~C~~-~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~  160 (238)
T 2p1y_A           82 PSQTSVYFCAS-GDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFP  160 (238)
T ss_dssp             GGGCEEEEEEE-EC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEE
T ss_pred             cccCeeEEEEE-EeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEE
Confidence            99999999999 665321   011123456665432            333 3456678999999999999999999999


Q ss_pred             EEECCe--e---ee--------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        239 WRIGND--T---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       239 W~~~~~--~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      |++++.  .   +.        ....++.+..  +......+|+|.+++.+|+|.|+|.|.|..
T Consensus       161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFF--NKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEECTTSCCEEEEEEETTCSEEEETTEEEEE--ETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEECCCCCCEEEEEEccCCCcccCCceEEEe--cCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            999641  1   10        0123343321  011135789999999999999999999974

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.82  E-value=8.6e-19  Score=134.63  Aligned_cols=165  Identities=17%  Similarity=0.276  Sum_probs=112.8

Q ss_pred             eEEEeeceEEecCCcEEEEEEec---cCceEEEEEcCccceeeccCcceEEEeeeeCC-------eEEEEEeeccc--Cc
Q psy15235         24 KITYFGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSVDSGFAATANLTED-------NFKYSIHEAIL--ES   91 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~--~G   91 (323)
                      .+..+.+..+.+|++++|.|.+.   +.+.+.|+++|..+....   ...........       ...|.|.+++.  +|
T Consensus         5 ~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELAD---STQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCE---EEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             eccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCC---CCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            44556788899999999999955   567999999998876541   11112222111       35677776654  99


Q ss_pred             ceEEEeeccCCccc---e------eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeeccccccccCcE
Q psy15235         92 GYVQSSLFIPRMNA---I------TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATELSGRL  161 (323)
Q Consensus        92 ~Y~C~~~~~~~~~~---~------~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~  161 (323)
                      .|+|.+.+..+...   .      .|.+...+....+.+|+.+.|.|.+.+.|   .+ .+.|++++..+..    ....
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~~v~W~~~~~~~~~----~~~~  154 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPP---EPVDLLWLQDAVPLAT----APGH  154 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSS---CCCEEEEEESSCBSSS----STTS
T ss_pred             EEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCC---CCCEEEEEECCEeccC----CCCc
Confidence            99999988654321   1      12222244445577899999999999988   67 9999999988865    2211


Q ss_pred             EeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        162 TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       162 ~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                       .....|.|.+++  |+|.|+|.| .|..+.. .+..+.|.|
T Consensus       155 -~~~~~L~i~~~~--d~G~Y~C~a-~N~~g~~-~s~~~~l~V  191 (195)
T 2c5d_C          155 -GPQRSLHVPGLN--KTSSFSCEA-HNAKGVT-TSRTATITV  191 (195)
T ss_dssp             -SCCEEEEECCCS--SCEEEEEEE-EETTEEE-ECCCEEEEE
T ss_pred             -CCCCeEEEcccc--cCceEEEEE-EcCCCce-EEEEEEEEE
Confidence             356789999886  789999999 6764321 124555555

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.82  E-value=3.8e-19  Score=142.19  Aligned_cols=168  Identities=15%  Similarity=0.272  Sum_probs=113.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCe-----eccc-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK-----SITE-----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~-----~~~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|.+.+.+   .+.+.|+|+..     .+..     ......++.    .....|.|.+++.+|+
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~~~~---~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   86 (250)
T 3esu_F           10 STSSLSASLGDRVTISCRASQDI---RNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDI   86 (250)
T ss_dssp             SCSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cCCEEEeeCCCcEEEEEEecccC---CceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhC
Confidence            56666788999999999999987   67999998531     1100     011234443    3345899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEec--------------------ceeeeeceeEEeeCCeEEEEEEEecCC--CCc
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIMK--------------------PTAKLVETLTVIEGEKLRLECLVVGSP--PPT  236 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~--------------------p~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~  236 (323)
                      |.|.|.+ .+..+.. ......|.|..+                    +.+..+....+.+|++++|.|.+.+.|  .+.
T Consensus        87 G~Y~C~~-~n~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~  164 (250)
T 3esu_F           87 GTYFCQQ-GNTLPWT-FGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSW  164 (250)
T ss_dssp             EEEEEEE-CSSSSCE-ECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSE
T ss_pred             EEEEEEE-eeCCCce-ECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCE
Confidence            9999999 6653221 222334555442                    233455567788999999999998876  678


Q ss_pred             EEEEEC--Ceeeec----------------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        237 VEWRIG--NDTYFR----------------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       237 ~~W~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      +.|+++  +..+..                ...++.+..  .......+|+|.+++.+|+|.|+|.|.+
T Consensus       165 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          165 MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTA--DKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEE--EGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEe--cCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            999997  433210                113333331  1111345799999999999999999998

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.82  E-value=4.2e-19  Score=138.90  Aligned_cols=155  Identities=14%  Similarity=0.216  Sum_probs=111.2

Q ss_pred             EeeceEEecCCcEEEEEEec--cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEeeccCC
Q psy15235         27 YFGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSLFIPR  102 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~~~~~  102 (323)
                      .+.++.+.+|+++.|.|.+.  +.+.+.|++++..+...              ....|.|.++  .|+|.|+|.+.+..+
T Consensus        24 ~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~   89 (218)
T 3k0w_A           24 NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG--------------NTSELIFNAVHVKDAGFYVCRVNNNFT   89 (218)
T ss_dssp             CCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC--------------CSSEEEETTCCGGGCEEEEEEEECTTC
T ss_pred             CCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC--------------CCCEEEEccCChhhCeEeEEEEEcCCC
Confidence            45678899999999999954  56799999998876553              1234555555  459999999998754


Q ss_pred             cc-----cee-------------------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccccc
Q psy15235        103 MN-----AIT-------------------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS  158 (323)
Q Consensus       103 ~~-----~~~-------------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~  158 (323)
                      ..     .+.                   +.+...+....+..|+.++|.|.+.+.+   .+.+.|++++..+..     
T Consensus        90 ~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p---~~~v~W~~~~~~~~~-----  161 (218)
T 3k0w_A           90 FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSP---IPHYQWFKNELPLTH-----  161 (218)
T ss_dssp             CEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSS---CCEEEEEETTEECTT-----
T ss_pred             CceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccC---CCeEEEEECCEECCC-----
Confidence            32     111                   1222244445678899999999999887   689999999998876     


Q ss_pred             CcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEeccee
Q psy15235        159 GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA  209 (323)
Q Consensus       159 ~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~  209 (323)
                          .....|.|.++..+|+|.|+|.+ .|..+. ..+..+.|.|...+.+
T Consensus       162 ----~~~~~L~i~~v~~~d~G~Y~C~a-~n~~g~-~~s~~~~l~V~~~~~~  206 (218)
T 3k0w_A          162 ----ETKKLYMVPYVDLEHQGTYWCHV-YNDRDS-QDSKKVEIIIDELNNL  206 (218)
T ss_dssp             ----CCSSEEEESSCCGGGCEEEEEEE-ECSSCE-EECCCEEEEECC----
T ss_pred             ----CCCCEEEEeecChhcCEEEEEEE-EcCCCC-ceeeeEEEEEeCCccC
Confidence                34568999999999999999999 675332 2455556666554333

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.82  E-value=5.3e-19  Score=140.60  Aligned_cols=169  Identities=15%  Similarity=0.249  Sum_probs=113.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eec---cc-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSI---TE-----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~---~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|.+.+.+   .+.+.|+|+.  ...   ..     ......|+.    .....|.|.+++.+|+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            7 SPATLSVTPGNSVSLSCRASQSI---GNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cCCeEEEcCCCcEEEEEEeCCCC---CceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            45666788999999999998877   6899999953  111   00     001234554    2356899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEecc--------------eeeeeceeEEeeCCeEEEEEEEecCC--CCcEEEEEC
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIMKP--------------TAKLVETLTVIEGEKLRLECLVVGSP--PPTVEWRIG  242 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~  242 (323)
                      |.|.|.+ .+.... .......|.|..+|              .+..+....+.+|++++|.|.+.+.|  .+.+.|+++
T Consensus        84 G~Y~C~~-~n~~~~-~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A           84 GMYFCQQ-SNSXPY-TFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             EEEEEEE-CSSSSC-EECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EEEEEeE-ecCCce-EECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence            9999999 665321 11233456666543              23344455688999999999998876  478999984


Q ss_pred             C--eeee---------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        243 N--DTYF---------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       243 ~--~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      +  ..+.               ....++.+...  ......+|+|.+++.+|+|.|+|.|.|.
T Consensus       162 ~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          162 FPGNRLEYMGYVSYSGSTYYNPSLKSRISITRD--TSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             CTTSCEEEEEEECTTSCEEECGGGTTCEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             CCCCCcEEEEEEecCCccccCccccCcEEEEec--CCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            2  2221               01234444311  1113568999999999999999999984

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.82  E-value=1.6e-19  Score=137.39  Aligned_cols=161  Identities=11%  Similarity=0.060  Sum_probs=110.3

Q ss_pred             ceEEecCCcEEEEEEe--ccCceEEEEEcCccceeecc----------CcceEEEeee---eCCeEEEEEeecc--cCcc
Q psy15235         30 DTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSV----------DSGFAATANL---TEDNFKYSIHEAI--LESG   92 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~----------~~~~~~~~~~---~~~~~~l~i~~~~--~~G~   92 (323)
                      .+.+.+|++++|.|.+  .+.+.+.|++++..+.....          ...+ .....   ..+...|.|.+++  |+|.
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDR-ADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGG-EECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCc-cccccccccCCeEEEEEecCCHHHCEE
Confidence            4678999999999995  45579999998864322100          0011 11111   2345556666665  4999


Q ss_pred             eEEEeeccCCccceeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEee
Q psy15235         93 YVQSSLFIPRMNAITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK  172 (323)
Q Consensus        93 Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~  172 (323)
                      |+|.+.+..+...+.+.....+....+.+|+.++|.|.+.+.|   .+.+.|++++..+.          .....|.|.+
T Consensus        83 Y~C~~~~~~~~~~l~V~~~~~~~~~~v~~g~~~~l~C~~~~~p---~~~v~W~~~~~~~~----------~~~~~L~i~~  149 (184)
T 2ny1_B           83 YICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGS---SPSVQCRSPRGKNI----------QGGKTLSVSQ  149 (184)
T ss_dssp             EEEEETTEEEEEEEEEEEEEESSCSEEETTCCEEEEEECCTTC---CCEEEEECTTSCEE----------EESSEEEESS
T ss_pred             EEEEEEcCCCcEEEEEEEecCCCCceeecCCCEEEEEEcCCCC---CCEEEEEeCCCccc----------cCceEEEEec
Confidence            9999987755443333322233344578899999999998877   78999999876653          3567899999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      ++.+|+|.|+|.+ .+.  .......+.|.|...|
T Consensus       150 v~~~d~G~Y~C~a-~n~--~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          150 LELQDSGTWTCTV-LQN--QKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             CCGGGCEEEEEEE-EET--TEEEEEEEEEEEECCC
T ss_pred             CCcCCCeEEEEEE-EEC--CceEEEEEEEEEEecC
Confidence            9999999999999 665  3344556666665544

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.82  E-value=8.1e-19  Score=140.80  Aligned_cols=188  Identities=16%  Similarity=0.217  Sum_probs=118.4

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc-------------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE-------------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~-------------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ....+.+|++++|.|.+.+.+.. .+.+.|||..  ..+..             .....+|+.      .....|.|.++
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGYTFT-EYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CceEEcCCCCEEEEEEEeccccc-ccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            33458899999999999875421 4689999832  21110             111234554      22456999999


Q ss_pred             ecCCCeeEEEEEEcCCCC--CCCCceeeeeEEEe----------------cceee-eeceeEEeeCCeEEEEEEEecCCC
Q psy15235        174 TVDDAGQYSCRLIDPKST--NTTPLAQADFDVIM----------------KPTAK-LVETLTVIEGEKLRLECLVVGSPP  234 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~----------------~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~  234 (323)
                      +.+|+|.|.|.+ .+...  .........|.|..                +|.+. .+....+.+|++++|.|.+.+.|.
T Consensus        89 ~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  167 (256)
T 3umt_A           89 TSEDSAVYYCAR-DDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG  167 (256)
T ss_dssp             CGGGCEEEEEEE-CCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT
T ss_pred             CcccCEEEEEEE-ccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC
Confidence            999999999999 65411  11223345566663                34444 344577889999999999999888


Q ss_pred             CcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        235 PTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       235 ~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                      +.+.|+++  +..+.           ....++....    .....+|+|.+++.+|+|.|+|.|.|..+..   -..-..
T Consensus       168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~---fg~gt~  240 (256)
T 3umt_A          168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR----SGSDYSLTISSLESEDFVDYYCLQYASSPPT---FGGGTK  240 (256)
T ss_dssp             TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEE----ETTEEEEEECSCCGGGCSEEEEEECSSSSCE---ECCCEE
T ss_pred             cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEec----CCCEEEEEECCCChhHCEEEEEEEeeCCCcE---ECCCEE
Confidence            89999984  22211           0112333221    1135679999999999999999999965331   223456


Q ss_pred             EEEcceecCc
Q psy15235        302 VRVKGKSFGY  311 (323)
Q Consensus       302 l~v~~~~~~~  311 (323)
                      |.|.+.++..
T Consensus       241 L~V~~~~~~~  250 (256)
T 3umt_A          241 LEIKRAAALE  250 (256)
T ss_dssp             EEEC------
T ss_pred             EEEECCCccc
Confidence            6676665543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.82  E-value=3.6e-19  Score=141.94  Aligned_cols=173  Identities=12%  Similarity=0.280  Sum_probs=113.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE----------------CCeeccccccccCcEE-----eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK----------------GNKSITEATELSGRLT-----QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~----------------~~~~~~~~~~~~~~~~-----~~~~~l~i~  171 (323)
                      .|....+.+|++++|.|.+.+.+   .+.+.|||                ++..... ....+|+.     .....|.|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            7 HPSWVISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQ-GVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             ECSEEEEETTSCEEEEEEESSSC---CCSEEEEEECTTSCCEEEEEECTTSCCEECT-TCCGGGEEEEEEETTEEEEEEC
T ss_pred             CCcEEEEeCCCcEEEEeEecCCC---ceEEEEEEECCCCCcEEEEEEccCCCceecC-cccCCcEEEEecCCCEEEEEEC
Confidence            45566788999999999998876   78999998                2221111 11224554     234589999


Q ss_pred             eeecCCCeeEEEEEEcCCCC--CCCCceeeeeEEEe------cceeee--eceeEEeeCCeEEEEEEEecCCCC--cEEE
Q psy15235        172 KTTVDDAGQYSCRLIDPKST--NTTPLAQADFDVIM------KPTAKL--VETLTVIEGEKLRLECLVVGSPPP--TVEW  239 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~------~p~~~~--~~~~~~~~g~~~~l~C~~~g~p~~--~~~W  239 (323)
                      +++.+|+|.|.|.+ .+..+  .........+.|..      +|.+..  +....+.+|+.++|.|.+.|.|++  .+.|
T Consensus        83 ~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  161 (246)
T 4dzb_B           83 SAHPEDSSFYICSA-RTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  161 (246)
T ss_dssp             SCCGGGCEEEEEEE-CCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCHHHCEEEEEEE-ecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence            99999999999999 65421  11122334566653      444432  222335569999999999887554  8999


Q ss_pred             EECCeeeeccCCeeeeec---C-C-CCC--CcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235        240 RIGNDTYFRSQGRIKLSE---H-P-EKG--TANSVLQIDEATMAD-RGNYYCHGNNVATR  291 (323)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~---~-~-~~~--~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~  291 (323)
                      +++|..+..... .....   . . .++  ...+.|.|.....+| .|.|+|.|.|....
T Consensus       162 ~k~g~~l~~~~~-~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          162 WVNGKEVHSGVC-TDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             EETTEEECTTEE-ECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EECCEECCCCcc-cccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            999988753211 11000   0 0 011  123568999998888 99999999998754

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.82  E-value=1.1e-18  Score=141.92  Aligned_cols=170  Identities=15%  Similarity=0.229  Sum_probs=114.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c----------cccccCcEE--e----ceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E----------ATELSGRLT--Q----SKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~----------~~~~~~~~~--~----~~~~l~i~  171 (323)
                      .|....+.+|++++|.|.+.+.+.. .+.+.|+|++  ....   .          ......|+.  .    ....|.|.
T Consensus        32 ~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  110 (282)
T 1qok_A           32 QSGAELVRSGTSVKLSCTASGFNIK-DSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS  110 (282)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEeCCCeEEEEEeccCCCCC-CceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence            3455678899999999999876411 4689999953  1111   0          011235554  1    24689999


Q ss_pred             eeecCCCeeEEEEEEcCCCC---CCCCceeeeeEEEecc---------------eee-eeceeEEeeCCeEEEEEEEecC
Q psy15235        172 KTTVDDAGQYSCRLIDPKST---NTTPLAQADFDVIMKP---------------TAK-LVETLTVIEGEKLRLECLVVGS  232 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~---~~~~~~~~~l~v~~~p---------------~~~-~~~~~~~~~g~~~~l~C~~~g~  232 (323)
                      +++.+|+|.|.|.+ .+..+   .........|.|...|               .+. .+....+.+|++++|.|.+.+.
T Consensus       111 ~v~~~DsG~Y~C~~-~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~  189 (282)
T 1qok_A          111 SLTSEDTAVYYCNE-GTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS  189 (282)
T ss_dssp             SCCGGGCEEEEEEE-ECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred             cCChhhCEEEEEEe-ccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence            99999999999999 66532   1111223456666542               233 3345678899999999999998


Q ss_pred             CCCcEEEEE--CCeeeec-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        233 PPPTVEWRI--GNDTYFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       233 p~~~~~W~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      | +.+.|++  ++..+..           ...++....    .....+|+|.+++.+|+|.|+|.|.|..
T Consensus       190 ~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  254 (282)
T 1qok_A          190 V-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG----SGTSYSLTISRMEAEDAATYYCQQRSSY  254 (282)
T ss_dssp             C-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             C-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEec----CCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence            8 8999999  5544310           123333221    0135689999999999999999999854

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.82  E-value=1.4e-19  Score=140.82  Aligned_cols=175  Identities=17%  Similarity=0.245  Sum_probs=113.9

Q ss_pred             EeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEE---EEEe--ecccCcceEEEeec
Q psy15235         27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFK---YSIH--EAILESGYVQSSLF   99 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~---l~i~--~~~~~G~Y~C~~~~   99 (323)
                      .+.++.+.+|+++.|.|.+  .+.+.+.|++++..+........... .....+.+.   |.+.  ...|+|.|+|.+.+
T Consensus        15 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n   93 (212)
T 2v9r_A           15 HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR-MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARN   93 (212)
T ss_dssp             CCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSE-EECTTSCEEESSCCCCSSCCCSCEEEEEEEEE
T ss_pred             CCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccce-EEecCCcEEEEEEEecCCCcccCeEEEEEEEC
Confidence            4567889999999999994  46789999999987765421111111 111122221   2223  33459999999987


Q ss_pred             cCCcc-----ceeeee-----eeCCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcEEeceeEE
Q psy15235        100 IPRMN-----AITGNY-----DIEPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSI  168 (323)
Q Consensus       100 ~~~~~-----~~~~~~-----~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l  168 (323)
                      ..+..     .+.+..     ...+....+..|+.++|.|.+ .+.+   .+.+.|++++..+...   ..++......|
T Consensus        94 ~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~v~W~~~~~~l~~~---~~~~~~~~~~L  167 (212)
T 2v9r_A           94 YLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHP---EPTISWKKDGSPLDDK---DERITIRGGKL  167 (212)
T ss_dssp             TTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEES---CCEEEEEETTEEECTT---STTEEEETTEE
T ss_pred             CCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCC---CCEEEEEECCccCCCC---cceEEccCCeE
Confidence            65432     111111     113444567889999999998 7777   6899999999988651   23344445689


Q ss_pred             EEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee
Q psy15235        169 TIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK  210 (323)
Q Consensus       169 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~  210 (323)
                      .|.++..+|+|.|+|.+ .|..+. .....+.|.|..+|.+.
T Consensus       168 ~i~~~~~~d~G~Y~C~a-~N~~g~-~~s~~~~l~V~~~P~~~  207 (212)
T 2v9r_A          168 MITYTRKSDAGKYVCVG-TNMVGE-RESEVAELTVLERPSFV  207 (212)
T ss_dssp             EESSCCGGGCEEEEEEE-EETTEE-EECCCEEEEEEC-----
T ss_pred             EEeeCCHhhCeeEEEEE-ecccCc-eecceEEEEEEeCchHh
Confidence            99999999999999999 676432 12334788888877654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.82  E-value=5.8e-20  Score=142.58  Aligned_cols=168  Identities=13%  Similarity=0.239  Sum_probs=108.5

Q ss_pred             EecCCcEEEEEEeecCC--CCCCceEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        119 FEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      +..|++++|.|.+.+.+  |. ...|.|+|++..+.....      ...++ .....|.|.+++.+|+|.|+|.+ .+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a-~~~~   91 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDP-EVQFSWFVDDVEVHTAQTKPREEQFNSTF-RSVSELPIMHQDWLNGKEFKCRV-NSAA   91 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCC-CCEEEEEETTEEECCCEEECCCEETTTEE-EEEEEEECCHHHHHTTCCEEEEE-ECTT
T ss_pred             hccCCceEEEEEEeCcccCCC-ceEEEEEECCccccccccCCCcCcCCCcE-EEEEEEEEehhHcCCCCEEEEEE-EccC
Confidence            67899999999998763  21 359999999876643100      01122 23457999999999999999999 6664


Q ss_pred             CCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC-Cc
Q psy15235        191 TNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG-TA  264 (323)
Q Consensus       191 ~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~  264 (323)
                      +.......+.+  .+..+|.+.+.. ......|+.+.|.|.+.|. |+ +.+.|++||..+.... ........++. ..
T Consensus        92 ~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~-~~~~~~~~~g~~~~  170 (207)
T 2vol_A           92 FPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYK-NTQPIMDTDGSYFV  170 (207)
T ss_dssp             CSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEE-ECCCEECTTSCEEE
T ss_pred             CCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcc-cCCceECCCCCEEE
Confidence            33222223333  344566665322 1122358999999999885 55 3899999998764321 11111001111 12


Q ss_pred             ceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        265 NSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       265 ~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.|.|.....+|.|.|+|.|.|...
T Consensus       171 ~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          171 YSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             EEEEEECHHHcCCCCEEEEEEECCCC
Confidence            35677877777889999999999873

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.81  E-value=4.2e-19  Score=138.69  Aligned_cols=172  Identities=10%  Similarity=0.012  Sum_probs=107.9

Q ss_pred             CCceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEe
Q psy15235         21 ADGKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSS   97 (323)
Q Consensus        21 ~~~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~   97 (323)
                      +.+.+.......+.+|++|+|.|.+. +.+.+.|+|+|..+....    .............|.|.++  .|+|.|+|.+
T Consensus         8 ~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~~~~W~k~g~~~~~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            8 PMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREI----GRRLKFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             CCCCEEESSCSEEETTCCEEEEECCCTTCSEEEEEEEETTEEEEC----SEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEecCCCccCCCCCEEEEEEcCCCCCEEEEEECCCcccccc----cccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence            34455544446789999999999954 457899999998776431    0100011122014555554  5599999999


Q ss_pred             eccCCc----ccee---------eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEec
Q psy15235         98 LFIPRM----NAIT---------GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQS  164 (323)
Q Consensus        98 ~~~~~~----~~~~---------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~  164 (323)
                      .+..+.    ..+.         |.+...+ ...+.+|++++|.|...+.+   .+.+.|+|+|..+..    .......
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~---~~~~~W~k~g~~~~~----~~~~~~~  155 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIP---FDRFSLAKEGELSLP----QHQSGEH  155 (218)
T ss_dssp             EETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSC---CSEEEEEETTCSSCC----SEEECSS
T ss_pred             EcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCC---CCEEEEEECCCcccc----cccCCCc
Confidence            886432    1111         1121222 23467899999999766655   579999999987654    1111245


Q ss_pred             eeEEEEeeeecCCCeeEEEEEEcCCCC---CCCCceeeeeEEEe
Q psy15235        165 KDSITIRKTTVDDAGQYSCRLIDPKST---NTTPLAQADFDVIM  205 (323)
Q Consensus       165 ~~~l~i~~~~~~d~G~y~C~~~~~~~~---~~~~~~~~~l~v~~  205 (323)
                      ...|.|.+++.+|+|.|+|.+ .+...   ....+..+.|.|..
T Consensus       156 ~~~L~I~~v~~~D~G~Y~C~a-~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          156 PANFSLGPVDLNVSGIYRCYG-WYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             SEEEECCSCCGGGCEEEEEEE-ECTTSTTEECCCCCCEEEEEC-
T ss_pred             cCEEEEccCCcccCEEEEEEE-EcCCCCCcCCCCCCcEEEEEec
Confidence            678999999999999999999 55421   12334455555543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.81  E-value=1.1e-18  Score=139.76  Aligned_cols=188  Identities=14%  Similarity=0.171  Sum_probs=119.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~  171 (323)
                      .+....+.+|++++|.|.+.+.+.. .+.+.|+|.  +..+..             .....+++.      .....|.|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            7 QSGAELVKPGASVRLSCTASGFNIK-DTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGG-GSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCeeecCCCcEEEEEEeeCCccc-CceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            4555678899999999999874311 468999982  221110             111234544      124569999


Q ss_pred             eeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe---------------cceee-eeceeEEeeCCeEEEEEEEecCCCC
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM---------------KPTAK-LVETLTVIEGEKLRLECLVVGSPPP  235 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---------------~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~  235 (323)
                      +++.+|+|.|.|.+ .+.... .......|.|..               ++.+. .+....+.+|++++|.|.+.+.|.+
T Consensus        86 ~v~~~DsG~Y~C~~-~~~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~  163 (253)
T 3uzq_A           86 SLTSGDTAVYYCSR-GWEGFA-YWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR  163 (253)
T ss_dssp             SCCGGGCEEEEEEE-CSSSCC-EECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred             CCCcccCEEEEEEE-eeCCcc-EECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence            99999999999999 664222 112344566653               33444 3445778999999999999988776


Q ss_pred             ----cEEEEECC--eeee---c--------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235        236 ----TVEWRIGN--DTYF---R--------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA  298 (323)
Q Consensus       236 ----~~~W~~~~--~~~~---~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~  298 (323)
                          .+.|++++  ....   .        ...++....    .....+|+|.+++.+|+|.|+|.|.|..+...   ..
T Consensus       164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~f---g~  236 (253)
T 3uzq_A          164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG----SRTDFTLTINPVEADDVATYFCQRSNEVPWTF---GG  236 (253)
T ss_dssp             TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSSSCCB---CC
T ss_pred             CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeC----CCCEEEEEECCCCHHHCEEEEEEEccCCCcEE---CC
Confidence                89999842  2211   0        112232220    11356799999999999999999999765422   22


Q ss_pred             EEEEEEcceecC
Q psy15235        299 FVYVRVKGKSFG  310 (323)
Q Consensus       299 ~~~l~v~~~~~~  310 (323)
                      -..|.|.+.++.
T Consensus       237 gt~l~v~~~~~~  248 (253)
T 3uzq_A          237 GTKLEIKRPLEH  248 (253)
T ss_dssp             CEEEEECCC---
T ss_pred             CEEEEEcCCCCC
Confidence            345666666544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.81  E-value=1.7e-18  Score=138.88  Aligned_cols=171  Identities=15%  Similarity=0.200  Sum_probs=113.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCC-CCCCceEEEEECC--eecc-------------ccccccCcEE------eceeEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPP-PGDDYQIVWYKGN--KSIT-------------EATELSGRLT------QSKDSITI  170 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~-~~~~~~i~W~~~~--~~~~-------------~~~~~~~~~~------~~~~~l~i  170 (323)
                      .+....+.+|++++|.|.+.+.. +  .+.+.|||..  ....             ......+|+.      .....|.|
T Consensus        12 ~~~~~~v~~G~~v~L~C~~~~~~~~--~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   89 (256)
T 3juy_B           12 QSGAEVKKPGASVKVSCQASGYRFS--HFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL   89 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG--GSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             ecCCceecCCCeEEEEEEeeccccc--CceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEE
Confidence            55666788999999999998841 2  5799999732  1110             0111234554      12457999


Q ss_pred             eeeecCCCeeEEEEEEcCCC----------CCCCCceeeeeEEEec---------------ce-eeeeceeEEeeCCeEE
Q psy15235        171 RKTTVDDAGQYSCRLIDPKS----------TNTTPLAQADFDVIMK---------------PT-AKLVETLTVIEGEKLR  224 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~~----------~~~~~~~~~~l~v~~~---------------p~-~~~~~~~~~~~g~~~~  224 (323)
                      .+++.+|+|.|.|.+ .+..          ..........|.|...               +. +..+....+.+|++++
T Consensus        90 ~~v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~  168 (256)
T 3juy_B           90 RSLRSADTAVYYCAR-VGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERAT  168 (256)
T ss_dssp             CSCCGGGCEEEEEEE-CCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEE
T ss_pred             CCCCcccCEEEEEeE-EeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEE
Confidence            999999999999999 6540          1112233445666552               22 3345567788999999


Q ss_pred             EEEEEecCCC-CcEEEEEC--Ceeeec-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        225 LECLVVGSPP-PTVEWRIG--NDTYFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       225 l~C~~~g~p~-~~~~W~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      |.|.+.+.|. +.+.|++.  +..+..           ...++....    .....+|+|.+++.+|+|.|.|.|.|..+
T Consensus       169 L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          169 FSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG----SGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             EEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             EEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc----cCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            9999988876 89999983  222110           112333221    01356799999999999999999999653

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.81  E-value=2.5e-18  Score=137.91  Aligned_cols=172  Identities=13%  Similarity=0.219  Sum_probs=114.1

Q ss_pred             eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc---------cccccCcEE------eceeEEEEeeee
Q psy15235        112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE---------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       112 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~---------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ..|....+.+|++++|.|.+.+.+   .+.+.|||..  .....         ......++.      .....|.|.+++
T Consensus         8 q~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            8 QPDARVTVSEGASLQLRCKYSYSA---TPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             CSCSEEEEETTSCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             ecCceEEecCCCeEEEEEEeCCCC---CceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            356667788999999999998886   7899999832  11100         001123332      245679999999


Q ss_pred             cCCCeeEEEEEEcCCCCCC--CCceeeeeEEEe--------------------cceee-eeceeEEeeCCeEEEEEEEec
Q psy15235        175 VDDAGQYSCRLIDPKSTNT--TPLAQADFDVIM--------------------KPTAK-LVETLTVIEGEKLRLECLVVG  231 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~~~--~~~~~~~l~v~~--------------------~p~~~-~~~~~~~~~g~~~~l~C~~~g  231 (323)
                      .+|+|.|.|.+ .+..+..  .......|.|..                    +|.+. .+....+.+|++++|.|.+.+
T Consensus        85 ~~DsG~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  163 (256)
T 3tf7_C           85 RSDSAVYFCAV-SAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN  163 (256)
T ss_dssp             GGGCSEEEEEE-ECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred             cccCEEEEEEE-ecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence            99999999999 5653211  122234556654                    33444 344566779999999999987


Q ss_pred             CCCCcEEEEECC--eeee--c------------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        232 SPPPTVEWRIGN--DTYF--R------------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       232 ~p~~~~~W~~~~--~~~~--~------------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      . .+.+.|++..  ....  .            ...++....  . .....+|+|.+++.+|+|.|+|.|.|..|.
T Consensus       164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATR--T-TQEDFFLTLESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEEC--C-SSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred             C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEe--C-CCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence            6 6789999832  1110  0            012222221  1 123568999999999999999999998765

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.81  E-value=6.7e-20  Score=145.04  Aligned_cols=175  Identities=17%  Similarity=0.256  Sum_probs=112.3

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECC--eecc--------ccccccCcEE----eceeEEEEeeeecCCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGN--KSIT--------EATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~--~~~~--------~~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      |....+.+|++++|.|.+.+.++  .+ .+.|+|++  ..+.        .......++.    .....|.|.+++.+|+
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  103 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNI--GSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDE  103 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTT--TTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTC
T ss_pred             CCcEEeeCCCcEEEEEEecCCCC--CCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHC
Confidence            45556788999999999988653  23 79999863  2220        0011234554    2456899999999999


Q ss_pred             eeEEEEEEcCCCCC-CCCceeeeeEEE----ecceeee-eceeEEeeCCeEEEEEEEecCC-C-CcEEEEECCeeeeccC
Q psy15235        179 GQYSCRLIDPKSTN-TTPLAQADFDVI----MKPTAKL-VETLTVIEGEKLRLECLVVGSP-P-PTVEWRIGNDTYFRSQ  250 (323)
Q Consensus       179 G~y~C~~~~~~~~~-~~~~~~~~l~v~----~~p~~~~-~~~~~~~~g~~~~l~C~~~g~p-~-~~~~W~~~~~~~~~~~  250 (323)
                      |.|.|.+ .+..+. ........+.|.    .+|.+.. +.......|+.++|.|.+.|.+ + +.+.|+++|..+....
T Consensus       104 G~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  182 (234)
T 2j6e_L          104 ADYYCAT-WDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGV  182 (234)
T ss_dssp             SEEEEEE-EETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSE
T ss_pred             EEEEEEE-EcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCc
Confidence            9999999 555321 011223345553    2454442 2222234588999999998864 3 3899999998875331


Q ss_pred             CeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        251 GRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       251 ~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .........++ ....+.|.|.++..+|.|.|+|.|.|..+.
T Consensus       183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          183 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  224 (234)
T ss_dssp             EECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred             cccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence            11111100111 123578999999999999999999998844

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.81  E-value=1.4e-18  Score=131.86  Aligned_cols=148  Identities=16%  Similarity=0.303  Sum_probs=104.7

Q ss_pred             EeeceEEecCCcEEEEEEec--cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCC
Q psy15235         27 YFGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPR  102 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~  102 (323)
                      .+..+.+.+|++++|.|.+.  +.+.+.|++++..+...   .......+.......|.|.+++.  +|.|+|.+.+..+
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   84 (182)
T 1rhf_A            8 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL---DQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGE   84 (182)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS---EEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTT
T ss_pred             CCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC---CceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCC
Confidence            35667899999999999953  56799999999877654   11111122122245677776654  9999999988644


Q ss_pred             cc---ce------eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeeccccccccCcEEeceeEEEEee
Q psy15235        103 MN---AI------TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATELSGRLTQSKDSITIRK  172 (323)
Q Consensus       103 ~~---~~------~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~  172 (323)
                      ..   ..      .|.+...+....+..|+.+.|.|.+.+.|   .+ .+.|++++..+..    ..   .....|.|.+
T Consensus        85 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~~v~W~~~~~~~~~----~~---~~~~~L~i~~  154 (182)
T 1rhf_A           85 TEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPP---EPVTIVWWRGTTKIGG----PA---PSPSVLNVTG  154 (182)
T ss_dssp             CEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSS---SCCEEEEEETTEECSC----SE---ESSEEEEECC
T ss_pred             cEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCC---CCCEEEEEcCCeECCC----CC---CCceEEEEec
Confidence            31   11      12222244445578899999999999988   67 9999999988865    11   1567888888


Q ss_pred             eecCCCeeEEEEEEcCCC
Q psy15235        173 TTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~  190 (323)
                      +  +|+|.|+|.+ .|..
T Consensus       155 ~--~d~G~Y~C~a-~N~~  169 (182)
T 1rhf_A          155 V--TQSTMFSCEA-HNLK  169 (182)
T ss_dssp             C--SSCEEEEEEE-EETT
T ss_pred             c--ccCeEEEEEE-ECCC
Confidence            7  5899999999 6764

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.81  E-value=1.3e-18  Score=138.24  Aligned_cols=170  Identities=16%  Similarity=0.270  Sum_probs=114.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCC---CCCCceEEEEECC--eecc---c-----cccccCcEE----eceeEEEEeeeec
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPP---PGDDYQIVWYKGN--KSIT---E-----ATELSGRLT----QSKDSITIRKTTV  175 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~---~~~~~~i~W~~~~--~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~  175 (323)
                      .|....+.+|++++|.|.+.+.+   +  .+.+.|+|+.  ....   .     ......|+.    .....|.|.+++.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~--~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   84 (240)
T 1moe_A            7 SPASLAVSLGQRATMSCRAGESVDIFG--VGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (240)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCEETT--EECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eCCeEEecCCCCEEEEEeCCCccccCC--CceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCCh
Confidence            45666788999999999998875   2  4689999952  2111   0     011234554    2345899999999


Q ss_pred             CCCeeEEEEEEcCCCCCCCCceeeeeEEEecc-------eeeeeceeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ce
Q psy15235        176 DDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP-------TAKLVETLTVIEGEKLRLECLVVGSPP--PTVEWRIG--ND  244 (323)
Q Consensus       176 ~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p-------~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~  244 (323)
                      +|+|.|.|.+ .+..+. .......|.|..++       .+..+....+.+|++++|.|.+.+.|.  +.+.|+++  +.
T Consensus        85 ~D~G~Y~C~~-~n~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~  162 (240)
T 1moe_A           85 DDVATYYCQQ-TNEDPY-TFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ  162 (240)
T ss_dssp             GGCEEEEEEE-CSSSSC-CBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred             hhCEEEEEEE-ccCCce-eecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence            9999999999 665322 12334566666532       233455667889999999999998874  58999995  22


Q ss_pred             eee----------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        245 TYF----------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       245 ~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      .+.                ....++.+..  .......+|+|.+++.+|+|.|+|.|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          163 GLEWIGRIDPANGNSKYVPKFQGKATITA--DTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             CCEEEEEEETTTTEEEECGGGTTTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             CcEEEEEEcccCCccccCccccccEEEEE--cccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            211                0122343331  11113578999999999999999999953

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.81  E-value=6.3e-19  Score=144.10  Aligned_cols=167  Identities=11%  Similarity=0.071  Sum_probs=124.7

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .|.+...+....+.+|++++|.|.+.+       .+.|++++..+..       .......|.|.+++.+|+|.|+|.+ 
T Consensus        12 ~P~i~~~~~~~~v~~G~~v~l~C~~~~-------~i~W~~~~~~~~~-------~~~~~~~L~i~~~~~~d~G~Y~C~~-   76 (290)
T 2o26_X           12 PPSIHPAQSELIVEAGDTLSLTCIDPD-------FVRWTFKTYFNEM-------VENKKNEWIQEKAEATRTGTYTCSN-   76 (290)
T ss_dssp             CCEESSCSSEEEEETTSCEEEEEECTT-------EEEEEEECSSSCE-------EEECSSEEEETTCCGGGCEEEEEEE-
T ss_pred             CCEEeCCCCeEEEcCCCcEEEEECCCC-------cEEEecCCcceee-------ecCCCceEEEeccCHHhCeEEEEEe-
Confidence            344555666677889999999998765       7999999887621       0123378999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCC-CcEEEE-ECCeeeeccCCeeeeecCCCCCC
Q psy15235        187 DPKSTNTTPLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPP-PTVEWR-IGNDTYFRSQGRIKLSEHPEKGT  263 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
                      .+  +   ....+.|.|..+|.+. .+....+.+|+.+.|.|.+.+ |. +.+.|+ +++..+.. ..++...       
T Consensus        77 ~n--g---~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~-~~~~~~~-------  142 (290)
T 2o26_X           77 SN--G---LTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPT-DLTFVPN-------  142 (290)
T ss_dssp             SS--S---CEEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCT-TCEEEEE-------
T ss_pred             eC--C---ccEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCC-CCceeeC-------
Confidence            66  1   2667778887766443 444667889999999999985 77 899995 57766643 3444444       


Q ss_pred             cceeEEEeecCcCCCe-EEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        264 ANSVLQIDEATMADRG-NYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G-~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      ....|.|.++..+|+| .|+|.|.|..|.   .....+.|.|.
T Consensus       143 ~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~---~~s~~~~l~V~  182 (290)
T 2o26_X          143 PKAGITIKNVKRAYHRLCVRCAAQRDGTW---LHSDKFTLKVR  182 (290)
T ss_dssp             TTTEEEEESCCGGGTTCEEEEEEEETTEE---EECCCEEEEEE
T ss_pred             CCCCEEEecccHHHCCCEEEEEEEECCce---EEeEEEEEEEE
Confidence            3468999999999999 999999998643   12334666665

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.81  E-value=1.2e-18  Score=145.20  Aligned_cols=188  Identities=18%  Similarity=0.248  Sum_probs=126.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCC-CCceEEEEECCe--ec--c---------ccccccCcEE-----eceeEEEEeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYKGNK--SI--T---------EATELSGRLT-----QSKDSITIRKT  173 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~~--~~--~---------~~~~~~~~~~-----~~~~~l~i~~~  173 (323)
                      .+....+.+|++++|.|.+.+.++. ..+.+.|++++.  ..  .         ....+.+|+.     .....|.|.++
T Consensus        20 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   99 (331)
T 3u83_A           20 VNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRL   99 (331)
T ss_dssp             -CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSC
T ss_pred             cCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEccc
Confidence            4455668899999999999876211 056899999541  11  0         0112234443     24577999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceee---eeceeEEeeC---CeEEEEEE-EecCCCCcEEEEECCeee
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAK---LVETLTVIEG---EKLRLECL-VVGSPPPTVEWRIGNDTY  246 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~~~g---~~~~l~C~-~~g~p~~~~~W~~~~~~~  246 (323)
                      +.+|+|.|+|.+..+..  ......+.|.|..+|.+.   .+....+.+|   +.+.|.|. +.+.|.+.+.|++++...
T Consensus       100 ~~~D~G~Y~C~~~~~~~--~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~  177 (331)
T 3u83_A          100 ELEDEGVYICEFATFPT--GNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGE  177 (331)
T ss_dssp             CGGGCEEEEEEEEEETT--EEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCE
T ss_pred             CcccCcEEEEEEEecCC--CccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCc
Confidence            99999999999634442  235667788888877653   2334567778   78999998 788999999999963322


Q ss_pred             eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      ... .  ............+.|.|.++..+|.|.|+|.|.|..|.    ....+.|.|..+|.
T Consensus       178 ~~~-~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~----~~~~~~l~V~~~P~  233 (331)
T 3u83_A          178 AEY-Q--EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDR----FKESLTLNVQYEPE  233 (331)
T ss_dssp             EEE-E--EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEE----EEEEEECCEEEEEE
T ss_pred             ccc-c--eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCc----ceeeEEEEEecCCe
Confidence            110 0  00000000012467999999999999999999999865    66777777776654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.81  E-value=6.3e-19  Score=137.50  Aligned_cols=173  Identities=11%  Similarity=0.119  Sum_probs=112.7

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc--Cc---eEEEEEcCccceeecc-----C---------cceEE--EeeeeCCeEEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI--FE---QVKWQLNGRNINQSSV-----D---------SGFAA--TANLTEDNFKY   82 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~--~~---~v~W~~~g~~~~~~~~-----~---------~~~~~--~~~~~~~~~~l   82 (323)
                      .+..++.+.+.+|++|+|.|.+.+  .+   .|+|+|++..+.....     .         .++..  .......+..|
T Consensus         2 ~l~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL   81 (218)
T 4frw_A            2 ELETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSV   81 (218)
T ss_dssp             CEECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCE
T ss_pred             eEeCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEE
Confidence            466778899999999999999543  32   5899998765543210     0         00000  00111334557


Q ss_pred             EEeeccc--CcceEEEeeccCCccceee-eee--e-------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCee
Q psy15235         83 SIHEAIL--ESGYVQSSLFIPRMNAITG-NYD--I-------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS  150 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~~~~~~~~-~~~--~-------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~  150 (323)
                      .|.+++.  +|.|+|.+.+..+...... ...  .       .+....+..|+.+.+.|.+.+.|   .+.|+|++++..
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p---~p~i~W~~~~~~  158 (218)
T 4frw_A           82 LLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSP---APSVTWDTEVKG  158 (218)
T ss_dssp             EESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBS---CCEEEEEESSCC
T ss_pred             EEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCc---CceEEEEECCcc
Confidence            7776654  9999999876544321111 111  1       12222355688999999999988   789999999887


Q ss_pred             ccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        151 ITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       151 ~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      +..    .....     .....|.|.++..+|+|.|+|.| .|..+......++.|.|.
T Consensus       159 ~~~----~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a-~N~~g~~~~~~t~~v~V~  212 (218)
T 4frw_A          159 TTS----SRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVV-SHPGLLQDQRITHILHVS  212 (218)
T ss_dssp             EEE----EEEEECSSSEEEEEEEEECCCGGGTTCEEEEEE-ECTTCSSCEEEEEECCEE
T ss_pred             ccc----CceEecCCcEEEEEEEEEeeCCHHhCeEEEEEE-EeCCCCeEEEEEEEEEEC
Confidence            765    22222     33567999999999999999999 788666555555555554

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.81  E-value=3.3e-19  Score=140.32  Aligned_cols=189  Identities=17%  Similarity=0.226  Sum_probs=116.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc-------------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE-------------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~-------------~~~~~~~~~------~~~~~l~i~  171 (323)
                      .+....+.+|++++|.|.+.+.+.. ...+.|||++  .....             ...+.+|+.      .....|.|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFT-NYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccc-cceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence            4556678899999999999876421 3689999853  21110             011245654      135689999


Q ss_pred             eeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe----cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCe
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM----KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGND  244 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~  244 (323)
                      +++.+|+|.|.|.+ .+.... .......|.|..    +|.+.. .+...+.+|+.++|.|.+.|. |.+ .+.|++++.
T Consensus        85 ~v~~~D~G~Y~C~~-~~~~~~-~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  162 (227)
T 1mju_H           85 SLTSDDSAVYYCAN-KLGWFP-YWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL  162 (227)
T ss_dssp             SCCGGGCEEEEEEE-EETTEE-EECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCcccCEEEEEEE-CCCCce-EEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence            99999999999999 553111 111234666653    344442 223346689999999999875 776 899999887


Q ss_pred             eeecc-CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCcC
Q psy15235        245 TYFRS-QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYD  312 (323)
Q Consensus       245 ~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~  312 (323)
                      .+... ..... .  .......+.|+|..+..+| |.|+|.|.|..+.    ......+.+.++|....
T Consensus       163 ~~~~~~~~~~~-~--~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~----~~~~~~~~~~~~p~~~~  223 (227)
T 1mju_H          163 SSGVHTFPAVL-Q--SDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS----TKVDKKIEPRGPTIKPC  223 (227)
T ss_dssp             CTTEEECCCEE-E--TTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGT----EEEEEECCCCCC-----
T ss_pred             cCCcEECCcee-c--CCeEEEEEEEEEchhhcCC-CeEEEEEEECCCC----cceEEEeCCCCCCCCCC
Confidence            54211 11110 0  0011135689999998888 9999999998844    56666777777766543

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.81  E-value=5.5e-19  Score=141.41  Aligned_cols=184  Identities=15%  Similarity=0.168  Sum_probs=103.1

Q ss_pred             CcchhHHHHHHHHHHhhhccCCceEEE-eeceEEecCCcEEEEEEec--c-----CceEEEEEcC--ccceee-------
Q psy15235          1 MSMIHLCLSLLAIFVHQSISADGKITY-FGDTEIMEGAPINISCILT--I-----FEQVKWQLNG--RNINQS-------   63 (323)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~v~~G~~v~L~C~~~--~-----~~~v~W~~~g--~~~~~~-------   63 (323)
                      |.|..+++.+++++..........+.. +..+.+.+|++|+|.|.+.  +     .+.+.|+|++  ..+...       
T Consensus        13 m~M~~~~ll~ll~l~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~   92 (252)
T 3bkj_L           13 LKMKLPVRLLVLMFWIPGSSSDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTR   92 (252)
T ss_dssp             ---------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEE
T ss_pred             eeehHHHHHHHHHHhccccccccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcc
Confidence            555554433333332223334445554 6778899999999999954  3     3789999964  222110       


Q ss_pred             --ccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCcc---ceeeeeee---CCceeE------EecCCcEEE
Q psy15235         64 --SVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMN---AITGNYDI---EPKYKV------FEYRVPFTL  127 (323)
Q Consensus        64 --~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~---~~~~~~~~---~~~~~~------~~~g~~v~l  127 (323)
                        ....+  +......+...|.|.+++  |+|.|+|.+.+.....   .....+..   .|.+.+      +..|+.++|
T Consensus        93 ~~~~~~r--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L  170 (252)
T 3bkj_L           93 FSGVPDR--FSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASV  170 (252)
T ss_dssp             CTTCCTT--EEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEE
T ss_pred             cCCcCCc--eEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEE
Confidence              01111  222334666788888775  4999999998764321   11111111   233222      125889999


Q ss_pred             EEEeecCCCCCCceEEEEECCeecccc-ccc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        128 KCNVTSPPPGDDYQIVWYKGNKSITEA-TEL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       128 ~C~~~~~~~~~~~~i~W~~~~~~~~~~-~~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .|.+.+.+|. ..+|.|+++|..+... ...       ++.+ .....|.|.++..+|+|.|+|.+ .|.
T Consensus       171 ~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~Y~C~a-~n~  237 (252)
T 3bkj_L          171 VCFLNNFYPK-DINVKWKIDGSERQNGVLNSWTDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THK  237 (252)
T ss_dssp             EEEEEEEBSS-CCEEEEEETTEEECSSEEEEECCCCTTTCCE-EEEEEEEEEHHHHHHCCEEEEEE-ECT
T ss_pred             EEEEeeEeCC-CcEEEEEECCeecCCCeeeecCcccCCCCCE-EEEEEEEEcchhccCCCeEEEEE-EeC
Confidence            9999885541 2489999999887542 000       0111 22356899999999999999999 676

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.80  E-value=2.5e-18  Score=130.75  Aligned_cols=147  Identities=12%  Similarity=0.070  Sum_probs=99.4

Q ss_pred             CCceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeec
Q psy15235         21 ADGKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLF   99 (323)
Q Consensus        21 ~~~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~   99 (323)
                      +.+.+.......+.+|++++|.|.+. +.+.+.|+|+|....             ...+.+.|......|+|.|+|.+.+
T Consensus         7 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~-------------~~~~~L~i~~v~~~D~G~Y~C~a~n   73 (184)
T 2gi7_A            7 PKPSLQALPSSLVPLEKPVTLRCQGPPGVDLYRLEKLSSSRY-------------QDQAVLFIPAMKRSLAGRYRCSYQN   73 (184)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECSTTCSEEEEEETTTCCE-------------ESSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCccccCCCcEEEEEeCCCCCCEEEEEECCcccc-------------CcccEEEECcCChhhCceEEEEEEc
Confidence            34455544445789999999999954 567999999987611             1233344333444569999999988


Q ss_pred             cCCc----cceeeeeee---CCce-----eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeE
Q psy15235        100 IPRM----NAITGNYDI---EPKY-----KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDS  167 (323)
Q Consensus       100 ~~~~----~~~~~~~~~---~~~~-----~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~  167 (323)
                      ..+.    ..+...+..   .|..     ..+.+|+.++|.|.+.+.+    +.+.|+|+|..+..    ..+.......
T Consensus        74 ~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~----~~~~w~k~g~~~~~----~~~~~~~~~~  145 (184)
T 2gi7_A           74 GSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF----DQFALYKEGDPAPY----KNPERWYRAS  145 (184)
T ss_dssp             TTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCC----CEEEEEECCCCTTS----CCCCEEEEES
T ss_pred             CCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCC----cEEEEEECCCcCcc----eecCCCceEE
Confidence            5432    112111111   1111     1245799999999987654    58999999987764    2222245678


Q ss_pred             EEEeeeecCCCeeEEEEEEcCC
Q psy15235        168 ITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       168 l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |.|.+++.+|+|.|+|.+ .|.
T Consensus       146 L~i~~v~~~D~G~Y~C~a-~n~  166 (184)
T 2gi7_A          146 FPIITVTAAHSGTYRCYS-FSS  166 (184)
T ss_dssp             SSEEEETTCCSEEEEEEE-ECT
T ss_pred             EEEccCCccCCeEEEEEE-EeC
Confidence            999999999999999999 665

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.80  E-value=3.1e-18  Score=132.19  Aligned_cols=168  Identities=18%  Similarity=0.214  Sum_probs=106.9

Q ss_pred             eEEecCCcEEEEEEe--ccCceEEEEEcC-ccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCccc
Q psy15235         31 TEIMEGAPINISCIL--TIFEQVKWQLNG-RNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMNA  105 (323)
Q Consensus        31 ~~v~~G~~v~L~C~~--~~~~~v~W~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~~  105 (323)
                      +.+.+|++++|.|.+  .|.+.+.|+++. ..+..      ..   ........|.|.+++  |+|.|+|.+.+..+...
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~------~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~   81 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG------KV---TNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLE   81 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS------EE---EEETTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccc------eE---EEcCCccEEEECcCCHHHCEEEEEEEEECCceEe
Confidence            445699999999995  467889999843 22211      11   112334457777654  49999999998765433


Q ss_pred             eeeeeee--CCc-e-----eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC--c--EEeceeEEEEeee
Q psy15235        106 ITGNYDI--EPK-Y-----KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG--R--LTQSKDSITIRKT  173 (323)
Q Consensus       106 ~~~~~~~--~~~-~-----~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~--~--~~~~~~~l~i~~~  173 (323)
                      ....+.+  .|. .     ..+.+|+.++|.|.+.+.+|...++|.|++++..+........  .  .......|.|...
T Consensus        82 ~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~  161 (202)
T 1vca_A           82 KGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV  161 (202)
T ss_dssp             EEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCC
T ss_pred             eEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEee
Confidence            2333332  221 1     2267899999999998865421258999999987754111000  0  0123455678888


Q ss_pred             ecCCCeeEEEEEEcCCCCCC-----CCceeeeeEEEecce
Q psy15235        174 TVDDAGQYSCRLIDPKSTNT-----TPLAQADFDVIMKPT  208 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~-----~~~~~~~l~v~~~p~  208 (323)
                      ..+|.|.|+|.| .|..+..     ....++.|.|.++|.
T Consensus       162 ~~d~~g~ytC~A-~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          162 IEDIGKVLVCRA-KLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             GGGTTCEEEEEE-EECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             eccCCCeEEEEE-EccccCCCCcceeEeeEEEEEEecCCC
Confidence            888999999999 6664332     245677888888774

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.80  E-value=1.7e-18  Score=129.88  Aligned_cols=139  Identities=12%  Similarity=0.161  Sum_probs=99.1

Q ss_pred             eeceEEecCCcEEEEEEecc---CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc
Q psy15235         28 FGDTEIMEGAPINISCILTI---FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN  104 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~~---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~  104 (323)
                      +....+.+|+++.|.|.+.+   .+.+.|+++|..+...             ...+.+......|+|.|+|.+.+.....
T Consensus        11 p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-------------~~~~~~~~~~~~d~G~Y~C~~~~~~~s~   77 (170)
T 3ry4_A           11 PPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-------------TQPSYRFKANNNDSGEYTCQTGQTSLSD   77 (170)
T ss_dssp             SCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-------------CSSEEEEECCGGGCEEEEEEETTSBCCC
T ss_pred             CCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC-------------ccceEEEecccccCeEEEEEEeCCCceE
Confidence            34467999999999999543   4689999999877654             2222233344556999999998755444


Q ss_pred             ceeeeeee-----CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCe
Q psy15235        105 AITGNYDI-----EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAG  179 (323)
Q Consensus       105 ~~~~~~~~-----~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G  179 (323)
                      .+...+..     .+....+.+|+.+.|.|.+.+.+|  .+.+.|+++|..+..        ......|.|.++..+|+|
T Consensus        78 ~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~g~~~~~--------~~~~~~L~i~~v~~~d~G  147 (170)
T 3ry4_A           78 PVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKP--LVKVTFFQNGKSQKF--------SHLDPTFSIPQANHSHSG  147 (170)
T ss_dssp             CEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCC--EEEEEEEETTEEEEE--------ESSCCEEEESSCCGGGCE
T ss_pred             eEEEEEECCceEecCCCceeecCCeEEEEEECCCCCC--CceEEEEECCeEccc--------cCCCCeEEEEeccccCCE
Confidence            33222221     222234678999999999965443  689999999987653        123567999999999999


Q ss_pred             eEEEEEEcCCC
Q psy15235        180 QYSCRLIDPKS  190 (323)
Q Consensus       180 ~y~C~~~~~~~  190 (323)
                      .|+|.+ .|..
T Consensus       148 ~Y~C~a-~n~~  157 (170)
T 3ry4_A          148 DYHCTG-NIGY  157 (170)
T ss_dssp             EEEEEE-EETT
T ss_pred             EEEEEE-EeCc
Confidence            999999 6663

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.80  E-value=4.9e-19  Score=137.71  Aligned_cols=170  Identities=18%  Similarity=0.230  Sum_probs=111.7

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c---------cccccCcEE-e-----ceeEEEEeee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E---------ATELSGRLT-Q-----SKDSITIRKT  173 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~---------~~~~~~~~~-~-----~~~~l~i~~~  173 (323)
                      |....+.+|++++|.|.+.+.+.. .+.+.|+|++  ....   .         .....+|+. .     ....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSIT-SDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGG-GSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEecCCCcEEEEEEEecccCC-CCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            344567889999999999886411 3799999852  2211   0         011245554 1     2358999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeee
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTY  246 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~  246 (323)
                      +.+|+|.|.|.+ .+..   .......|.|..    +|.+. .++...+..|+.++|.|.+.|. |.| .+.|++++..+
T Consensus        86 ~~~D~G~Y~C~~-~~~~---~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~  161 (210)
T 3d9a_H           86 TTEDTATYYCAN-WDGD---YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  161 (210)
T ss_dssp             CGGGCEEEEEEE-TTSS---CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             CcccCEEEEEEE-ecCc---ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCccc
Confidence            999999999999 6652   122234566652    34444 2223446789999999999886 888 99999988753


Q ss_pred             eccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        247 FRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ..........  .......+.|.|.++..+| |.|+|.|.|..|.
T Consensus       162 ~~~~~~~~~~--~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  203 (210)
T 3d9a_H          162 GVHTFPAVLQ--SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  203 (210)
T ss_dssp             TEEECCCEEE--TTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGT
T ss_pred             ceEEcCCccC--CCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence            2111100001  0001134679999998877 9999999999965

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.80  E-value=1.5e-18  Score=139.35  Aligned_cols=171  Identities=16%  Similarity=0.224  Sum_probs=110.7

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc------------cccccCcEE------eceeEEEEee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE------------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~------------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      .+....+.+|++++|.|.+.+.+.. .+.+.|+|..  .....            ......|+.      .....|.|.+
T Consensus        14 ~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   92 (257)
T 3gkz_A           14 ESGPSLVKPSQTLSLTCSVTGDSVT-SGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS   92 (257)
T ss_dssp             EECCSEECTTCCEEEEEEEEESCCS-SCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEEcCCCcEEEEEEEEccccc-ceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence            3444558899999999999884311 5799999832  11100            011234544      1244799999


Q ss_pred             eecCCCeeEEEEEEcCCCC--CCCCceeeeeEEEec--------------ceee-eeceeEEeeCCeEEEEEEEecCCCC
Q psy15235        173 TTVDDAGQYSCRLIDPKST--NTTPLAQADFDVIMK--------------PTAK-LVETLTVIEGEKLRLECLVVGSPPP  235 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~--------------p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~  235 (323)
                      ++.+|+|.|.|.+ .+..+  .........|.|..+              +.+. .+....+.+|++++|.|.+.+.|.+
T Consensus        93 v~~~DsG~Y~C~~-~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  171 (257)
T 3gkz_A           93 VSSEDTATYYCSY-FDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS  171 (257)
T ss_dssp             CCGGGCEEEEEEE-ECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG
T ss_pred             CChhhCEEEEEEE-ecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc
Confidence            9999999999999 55411  111223445666543              3333 3445778899999999999988877


Q ss_pred             -cEEEEEC--Ceeee---c--------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        236 -TVEWRIG--NDTYF---R--------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       236 -~~~W~~~--~~~~~---~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                       .+.|+++  +..+.   .        ...++....    .....+|+|.+++.+|+|.|+|.|.+..
T Consensus       172 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          172 SHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSG----SGTSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             GGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             eEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEec----CCCEEEEEECCCChHHCEEEEEEEccCC
Confidence             8999983  22211   0        012222221    0134679999999999999999999855

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.80  E-value=5.7e-19  Score=138.55  Aligned_cols=172  Identities=19%  Similarity=0.245  Sum_probs=111.8

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c------------cccccCcEE-e-----ceeEEEEe
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E------------ATELSGRLT-Q-----SKDSITIR  171 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~------------~~~~~~~~~-~-----~~~~l~i~  171 (323)
                      ....+.+|++++|.|.+.+.+.. .+.+.|+|+.  ....   .            ...+.+|+. .     ....|.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            8 GGGLVQSGGSLRLSCATSGFTFT-DYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CceeEcCCCEEEEEEEecCccCC-CCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            34567889999999999875311 4689999853  2110   0            011235554 1     24689999


Q ss_pred             eeecCCCeeEEEEEEcCCCCC-C--CCceeeeeEEEe----cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEE
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTN-T--TPLAQADFDVIM----KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRI  241 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~-~--~~~~~~~l~v~~----~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~  241 (323)
                      +++.+|+|.|.|.+ .+..+. .  .......|.|..    +|.+.. ++...+.+|+.++|.|.+.|. |.| .+.|++
T Consensus        87 ~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  165 (222)
T 1q9r_B           87 TLRAEDSATYYCAR-DHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  165 (222)
T ss_dssp             SCCGGGCEEEEEEE-CCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             cCCcccCeEEEEEE-eccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEec
Confidence            99999999999999 665320 0  112234566653    344442 223345679999999999885 888 999999


Q ss_pred             CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +|..+..........  .......+.|+|.++..+| |.|+|.|.|..|.
T Consensus       166 ~g~~~~~~~~~~~~~--~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~  212 (222)
T 1q9r_B          166 GSLSSGVHTFPAVLQ--SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  212 (222)
T ss_dssp             GTBCTTEEEEEEEEE--TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             CCeEcceEecccccc--CCcEEEEEEEEECchhcCC-CeEEEEEEccCCC
Confidence            987643210000000  0001124679999999999 9999999999965

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.80  E-value=1e-18  Score=138.81  Aligned_cols=171  Identities=14%  Similarity=0.175  Sum_probs=111.6

Q ss_pred             eceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCcc
Q psy15235         29 GDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMN  104 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~  104 (323)
                      ..+.+.+|+++.|.|.+  .+.+.+.|+++|..+..........    .......|.|.+++  |+|.|+|.+.+..+..
T Consensus        23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   98 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK----LRHQQWSLVMESVVPSDRGNYTCVVENKFGSI   98 (241)
T ss_dssp             CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCE----EEGGGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccccee----eeccceEEEEEeCCcccCEEEEEEEeecCCce
Confidence            34678999999999994  4567999999998876642221111    12233456666554  4999999998866554


Q ss_pred             ceeeeeee-------------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE----CCeeccccccccCcE----E-
Q psy15235        105 AITGNYDI-------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK----GNKSITEATELSGRL----T-  162 (323)
Q Consensus       105 ~~~~~~~~-------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~----~~~~~~~~~~~~~~~----~-  162 (323)
                      .....+.+             .+....+..|+.+.|.|.+.+.+   .+.+.|++    ++..+..........    . 
T Consensus        99 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p---~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~  175 (241)
T 3grw_A           99 RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA---QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS  175 (241)
T ss_dssp             EEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSS---CCEEEEEEECCSSSCSSCTTTCCCEEEEEEEEC
T ss_pred             EEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCC---CCEEEEEEcccCCCcccCCCCceeeeeeeEeee
Confidence            32222222             23334466799999999999988   67999999    777665411100000    0 


Q ss_pred             ---eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEeccee
Q psy15235        163 ---QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA  209 (323)
Q Consensus       163 ---~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~  209 (323)
                         .....|.|.++..+|+|.|+|.+ .|..  +.....+.|.|..+|..
T Consensus       176 ~~~~~~~~L~i~~~~~~d~G~Y~C~a-~N~~--g~~~~~~~l~V~~~p~~  222 (241)
T 3grw_A          176 ESVEADVRLRLANVSERDGGEYLCRA-TNFI--GVAEKAFWLSVHGPRAA  222 (241)
T ss_dssp             SBSEEEEEEEECSCCGGGCEEEEEEE-ECSS--CEEEEEEEEEC------
T ss_pred             eecCCceEEEECcCCcccCcEEEEEE-ecCc--ceEEEEEEEEecCCCCC
Confidence               24567999999999999999999 7774  33466667777666544

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.80  E-value=1.6e-18  Score=133.20  Aligned_cols=156  Identities=13%  Similarity=0.058  Sum_probs=102.7

Q ss_pred             ceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeec
Q psy15235         23 GKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLF   99 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~   99 (323)
                      +.+.......+.+|++|+|.|.+. +.+.+.|+|+|..+....    .  ..........|.|.+++  |+|.|+|.+.+
T Consensus         6 P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~----~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 3p2t_A            6 PTLWAEPGSVISWGNSVTIWCQGTLEAREYRLDKEESPAPWDR----Q--NPLEPKNKARFSIPSMTEDYAGRYRCYYRS   79 (196)
T ss_dssp             CEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTSCSCSEE----E--CCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEccCCCcCCCCCcEEEEeeCCCCCCEEEEEECCCCCcccc----c--ccccCCceEEEEeccCCcccCceEEEEEeC
Confidence            344444334789999999999954 457999999998775430    0  00011234456666654  49999999988


Q ss_pred             cCCc----cceeeee---------eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc-EEece
Q psy15235        100 IPRM----NAITGNY---------DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR-LTQSK  165 (323)
Q Consensus       100 ~~~~----~~~~~~~---------~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~  165 (323)
                      ..+.    ..+...+         ...+.. .+.+|+.++|.|.+.+.+    +.+.|+|+|..+......... .....
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~~~~~~~~~~~~~  154 (196)
T 3p2t_A           80 PVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSPM----DTFLLCKERAAHPLLCLRSEHGAQQHQ  154 (196)
T ss_dssp             TTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEEE----EEEEEEETTCCCGGGSEEEEEEEEEEE
T ss_pred             CCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCCC----CEEEEEeCCCcccceeecccccccCcc
Confidence            7652    1221111         112221 467899999999998843    589999999876541000000 11456


Q ss_pred             eEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        166 DSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       166 ~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ..|.|.+++.+|+|.|+|.+ .|..
T Consensus       155 ~~L~i~~v~~~d~G~Y~C~a-~n~~  178 (196)
T 3p2t_A          155 AEFPMSPVTSVHGGTYRCFS-SHGF  178 (196)
T ss_dssp             EEEEECSCCGGGCEEEEEEE-ECGG
T ss_pred             eEEEeCCCcccCCCeEEEEE-EcCC
Confidence            78999999999999999999 6763

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.80  E-value=2.4e-19  Score=140.15  Aligned_cols=160  Identities=14%  Similarity=0.249  Sum_probs=107.8

Q ss_pred             EEEeeceEEecCCcEEEEEEec--cCceEEEEEcCccceeeccCcceEEEeeeeCCeEE--EEEeec--ccCcceEEEee
Q psy15235         25 ITYFGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFK--YSIHEA--ILESGYVQSSL   98 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~--l~i~~~--~~~G~Y~C~~~   98 (323)
                      +..+.++.+.+|+++.|.|.+.  +.+.+.|+++|..+........ ..  ....+.+.  +.|.++  .|+|.|+|.+.
T Consensus        13 ~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~-~~--~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~   89 (217)
T 2vr9_A           13 IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH-RV--QFKDGALFFYRTMQGKKEQDGGEYWCVAK   89 (217)
T ss_dssp             EECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSS-EE--ECTTSCEEESSCCBSSSCBCCEEEEEEEE
T ss_pred             ecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccce-eE--EecCCceEEEEEeccCCcccCceEEEEEe
Confidence            3345678899999999999954  5679999999987766421111 11  11222222  234443  45999999998


Q ss_pred             ccCCcc-----ceeee-----eeeCCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeecccccc----ccCcEE-
Q psy15235         99 FIPRMN-----AITGN-----YDIEPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATE----LSGRLT-  162 (323)
Q Consensus        99 ~~~~~~-----~~~~~-----~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~----~~~~~~-  162 (323)
                      +..+..     .+...     +...+....+..|+.+.|.|.+ .+.|   .+.+.|++++..+.....    ...++. 
T Consensus        90 n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~  166 (217)
T 2vr9_A           90 NRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIP---EPTLIWIKDGVPLDDLKAMSFGASSRVRI  166 (217)
T ss_dssp             ETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEES---CCEEEEEETTEEECCCCCC---CCCSEEE
T ss_pred             cCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCC---CCeEEEEECCcCCCcccccccccCCcEEe
Confidence            765532     11111     1123445557889999999998 7777   689999999988763110    123332 


Q ss_pred             eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        163 QSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      .....|.|.++..+|+|.|+|.+ .|..+
T Consensus       167 ~~~~~L~i~~~~~~d~G~Y~C~a-~N~~G  194 (217)
T 2vr9_A          167 VDGGNLLISNVEPIDEGNYKCIA-QNLVG  194 (217)
T ss_dssp             ETTTEEEESSCCSTTCEEEEEEE-EETTE
T ss_pred             cCCCcEEEeeCCHHHCeEEEEEE-Ecccc
Confidence            34568999999999999999999 67743

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.80  E-value=8.9e-20  Score=142.70  Aligned_cols=168  Identities=15%  Similarity=0.305  Sum_probs=107.0

Q ss_pred             EecCCcEEEEEEeecCC--CCCCceEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        119 FEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      +.+|++++|.|.+.+.+  |. .+.|.|+|++..+.....      ...++ .....|.|.+++.+|+|.|+|.+ .+..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~g~Y~C~~-~~~~   99 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDP-DVQISWFVNNVEVHTAQTQTHREDYNSTI-RVVSTLPIQHQDWMSGKEFKCKV-NNKD   99 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSC-CEEEEEEETTEEECCCEEEEEEETTTTEE-EEEEEEECCHHHHHTTCCEEEEE-EETT
T ss_pred             hccCCCeeEEEEEcCCccCCC-ceEEEEEECCccccCcccccccccCCCeE-EEEEEEEEcHHHcCCCCeEEEEE-ECCc
Confidence            66899999999998763  21 479999999977643110      01122 23457999999999999999999 5653


Q ss_pred             CCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEec-CCCC-cEEEEECCeeeeccCCeeeeecCCCCC-Cc
Q psy15235        191 TNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TA  264 (323)
Q Consensus       191 ~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~  264 (323)
                      +.......+.+  .+..+|.+.+.. ......|+.+.|.|.+.| +|.+ .+.|+++|..+.... ........++. ..
T Consensus       100 ~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~-~~~~~~~~~gt~~~  178 (218)
T 2rgs_A          100 LPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK-DTAPVLDSDGSYFI  178 (218)
T ss_dssp             CSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE-ECCCEECTTSCEEE
T ss_pred             CCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce-ecccEECCCCCEEE
Confidence            32211222211  334566655322 212235899999999998 5765 899999998774221 11111001111 12


Q ss_pred             ceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        265 NSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       265 ~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.|.|.....+|.|.|+|.|.|...
T Consensus       179 ~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          179 YSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             EEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             EEEEEECHHHcCCCCeEEEEEEcCCC
Confidence            34567776666779999999999874

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.80  E-value=1.1e-18  Score=132.02  Aligned_cols=150  Identities=15%  Similarity=0.196  Sum_probs=104.5

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-Ceeccc----------cccccCcEE--eceeEEEEeeeecCCCeeE
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITE----------ATELSGRLT--QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~----------~~~~~~~~~--~~~~~l~i~~~~~~d~G~y  181 (323)
                      ....+.+|++++|.|.+....+  .+.|.|+++ +..+..          ...+.+|+.  ..+.+|.|.+++.+|+|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~--~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLAS--YQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCS--CSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCc--eeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEE
Confidence            3456788999999998754322  579999994 333211          122335655  3567899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCC
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE  260 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  260 (323)
                      .|.+ .+..   .....+.|.|..++..   + .....+..++|.|.+ .| |.|.+.|++++..+..       .    
T Consensus        85 ~C~v-~~~~---~~~~~~~L~V~~~~~~---P-~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~-------~----  144 (180)
T 2dru_A           85 YMRM-LHET---EDQWKITMEVYEMVSK---P-MIYWECSNATLTCEVLEG-TDVELKLYQGKEHLRS-------L----  144 (180)
T ss_dssp             EEEE-ESSS---EEEEEEEEEEECCCCC---C-EEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEEE-------E----
T ss_pred             EEEE-EcCC---eEEEEEEEEEECCCCC---C-EEEecCCCEEEEEEeCCC-CCCEEEEEECCeECcC-------C----
Confidence            9999 6652   3455667777653211   0 111245679999999 66 8999999999988751       1    


Q ss_pred             CCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        261 KGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       261 ~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                         ...+|.+..  .+|+|.|+|.|.|..|.
T Consensus       145 ---~~~~l~~~~--~~d~g~Y~C~a~N~~~~  170 (180)
T 2dru_A          145 ---RQKTMSYQW--TNLRAPFKCKAVNRVSQ  170 (180)
T ss_dssp             ---SSSEEEEEC--SCCSSCEEEEEEETTEE
T ss_pred             ---CCCEEEEEE--hhcCccEEEEEecCcCc
Confidence               245566633  78999999999999965

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.80  E-value=1.1e-18  Score=139.58  Aligned_cols=177  Identities=14%  Similarity=0.259  Sum_probs=114.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCC--CCceEEEEECC--eecc--------ccccccCcEE----eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGN--KSIT--------EATELSGRLT----QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~--~~~~--------~~~~~~~~~~----~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|.+.+.++.  ..+.|.|+|++  ....        ......+|+.    .....|.|.+++.+
T Consensus        40 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  119 (252)
T 3bkj_L           40 TPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAE  119 (252)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcc
Confidence            4566678899999999999886521  03789999954  1110        0011234554    23458999999999


Q ss_pred             CCeeEEEEEEcCCCCCCCCceeeeeEEEe---cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeecc-
Q psy15235        177 DAGQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRS-  249 (323)
Q Consensus       177 d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~-  249 (323)
                      |+|.|.|.+ .+..+. .......+.|..   +|.+.. +....+.+|+.++|.|.+.|. |++ .+.|+++|..+... 
T Consensus       120 D~G~Y~C~~-~~~~~~-~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~  197 (252)
T 3bkj_L          120 DLGVYYCFQ-ASLVPL-TFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV  197 (252)
T ss_dssp             GCEEEEEEE-CSBSSC-EECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSE
T ss_pred             cCEEEEEEE-EcCCcc-EECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCe
Confidence            999999999 665321 112223566643   455543 222233468999999999874 544 79999999887532 


Q ss_pred             CCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        250 QGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       250 ~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ..........++. ...+.|.|.++..+|+|.|+|.|.|....
T Consensus       198 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          198 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             eeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            1111111001111 13467999999999999999999998743

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=2.6e-18  Score=137.21  Aligned_cols=209  Identities=11%  Similarity=0.064  Sum_probs=107.3

Q ss_pred             CceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEee
Q psy15235         22 DGKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSL   98 (323)
Q Consensus        22 ~~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~   98 (323)
                      .+.+.......+.+|++|+|.|.+. +.+.+.|+|+|..+.......    ..........|.|.+++  |+|.|+|.+.
T Consensus         7 kP~i~~~P~~~V~~G~~VtL~C~~~~~~~~~~W~k~g~~~~~~~~~~----~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            7 KPSLLAHPGPLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIG----EHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCEECCBSCSEEESSCCEEEEEEESSCCSEEEEEEESTTCEEEEEEC----BCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCEEEEcCCCEecCCCCEEEEEecCCCCcEEEEEECCCCCCcceeee----eccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            3444444446789999999999964 457899999998765421000    00001223456666554  4999999997


Q ss_pred             ccCC-------ccceee---------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235         99 FIPR-------MNAITG---------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT  162 (323)
Q Consensus        99 ~~~~-------~~~~~~---------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~  162 (323)
                      +...       ++.+..         .+...+. ..+.+|++++|.|.+.+.+    ..+.|+|+|..+..... .....
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~----~~~~w~k~g~~~~~~~~-~~~~~  156 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY----DMYHLSREGEAHERRFS-AGPKV  156 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC----SEEEEEETTSSCEECCB-CBCCS
T ss_pred             ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC----cEEEEEECCcccCcccc-ccccc
Confidence            5321       111111         1111222 1367899999999987754    58999999987654100 00000


Q ss_pred             --eceeEEEEeeeecCCCeeEEEEEEcCCC---CCCCCceeeeeEEEecceeeeec--eeEEeeCCeEEEEEEEecCCCC
Q psy15235        163 --QSKDSITIRKTTVDDAGQYSCRLIDPKS---TNTTPLAQADFDVIMKPTAKLVE--TLTVIEGEKLRLECLVVGSPPP  235 (323)
Q Consensus       163 --~~~~~l~i~~~~~~d~G~y~C~~~~~~~---~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~g~~~~l~C~~~g~p~~  235 (323)
                        .....|.|.+++  |+|.|+|.+ .+..   .....+..+.|.|..+|....+.  ......|..+.|.|.+ |.+.+
T Consensus       157 ~~~~~~~l~I~~v~--D~G~Y~C~a-~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~  232 (257)
T 1b6u_A          157 NGTFQADFPLGPAT--HGGTYRCFG-SFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLI  232 (257)
T ss_dssp             SSCCBEEEEEEECC--SCEEEEEEE-ECSSCTTBBCCCCCCEEECCBCCC------------------------------
T ss_pred             CCceeEEEEecccc--cCEEEEEEE-EcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHH
Confidence              236789999998  999999999 5432   12344566778888777554221  2234568899999877 45577


Q ss_pred             cEEEEECCe
Q psy15235        236 TVEWRIGND  244 (323)
Q Consensus       236 ~~~W~~~~~  244 (323)
                      .+.|...+-
T Consensus       233 ~~~~~~~~~  241 (257)
T 1b6u_A          233 SEEDLNLDL  241 (257)
T ss_dssp             ---------
T ss_pred             HHHHhhhhh
Confidence            899986553

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=4.1e-18  Score=130.02  Aligned_cols=165  Identities=12%  Similarity=0.082  Sum_probs=104.8

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeec
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLF   99 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~   99 (323)
                      +.+.......+.+|++|+|.|.+.+ ...+.|+|+|..+...... .     ........|.|.+++  |+|.|+|.+.+
T Consensus         5 P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~-~-----~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   78 (188)
T 1oll_A            5 PFIWAEPHFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPK-P-----PERINKVKFYIPDMNSRMAGQYSCIYRV   78 (188)
T ss_dssp             CEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCS-S-----CTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEeecCCcCCCCCCEEEEEecCCCCCEEEEEECCCcccccccc-c-----CCCcceeEEEeCcCCcccCeEEEEEecC
Confidence            3444333337899999999999654 4689999999876542100 0     011233456666654  49999999976


Q ss_pred             cCC----ccceee---------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEecee
Q psy15235        100 IPR----MNAITG---------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD  166 (323)
Q Consensus       100 ~~~----~~~~~~---------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~  166 (323)
                      ..+    +..+..         .+...+ ...+.+|+.++|.|.+.+.+    +.+.|+|+|..+..    .........
T Consensus        79 ~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~----~~~~~~~~~  149 (188)
T 1oll_A           79 GELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTAT----SMFLLLKEGRSSHV----QRGYGKVQA  149 (188)
T ss_dssp             TTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSSC----SEEEEEEESSSCEE----EEEECSSEE
T ss_pred             CCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCCC----CEEEEEECCccccc----cccCCCcee
Confidence            432    111111         111122 23467899999999987643    58999999977653    111224567


Q ss_pred             EEEEeeeecCCCeeEEEEEEcCCC-CCCCCceeeeeEE
Q psy15235        167 SITIRKTTVDDAGQYSCRLIDPKS-TNTTPLAQADFDV  203 (323)
Q Consensus       167 ~l~i~~~~~~d~G~y~C~~~~~~~-~~~~~~~~~~l~v  203 (323)
                      .|.|.+++.+|+|.|+|.+ .+.. .....+..+.|.|
T Consensus       150 ~L~I~~v~~~d~G~Y~C~a-~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          150 EFPLGPVTTAHRGTYRCFG-SYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             EEEEEECCGGGCEEEEEEC-EEETTEECCCCCCEEEEE
T ss_pred             EEEECCCCcCCCcEEEEEE-EcCCCcCCCCCCcEEEEe
Confidence            8999999999999999999 5442 1123344555544

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.80  E-value=1.1e-18  Score=137.60  Aligned_cols=169  Identities=15%  Similarity=0.211  Sum_probs=113.9

Q ss_pred             eceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCcc
Q psy15235         29 GDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMN  104 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~  104 (323)
                      ....+.+|+++.|.|.+  .+.+.+.|+++|..+.........    ....+...|.|.+++  |+|.|+|.+.+..+..
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~  102 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY----KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI  102 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCC----EEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccce----eeecCcceEEEecCCcccCEEEEEEEecccCcc
Confidence            45678999999999994  467799999999887654222111    122333456666554  4999999998776554


Q ss_pred             ceeeeeee-------------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE----CCeeccccccccCcEE-----
Q psy15235        105 AITGNYDI-------------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK----GNKSITEATELSGRLT-----  162 (323)
Q Consensus       105 ~~~~~~~~-------------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~----~~~~~~~~~~~~~~~~-----  162 (323)
                      .....+.+             .+....+..|+.+.|.|.+.+.+   .+.+.|++    +|..+...........     
T Consensus       103 ~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~  179 (231)
T 3ojm_B          103 NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA---QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI  179 (231)
T ss_dssp             EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSS---CCEEEEEEECCBTTBSBCTTSCBCEEEEEECST
T ss_pred             cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCC---CCEEEEEECCCCCCccccCCCcceEeEeccccc
Confidence            22222222             13344577899999999999988   67999999    6766543111000000     


Q ss_pred             --eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        163 --QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       163 --~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                        .....|.|.++..+|+|.|+|.+ .|..+  .....+.|.|..+|
T Consensus       180 ~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~~~p  223 (231)
T 3ojm_B          180 NSSNAEVLALFNVTEADAGEYICKV-SNYIG--QANQSAWLTVLPKQ  223 (231)
T ss_dssp             TCSCTTEEEECSCCGGGCEEEEEEE-EETTE--EEEEEEEEEEECCC
T ss_pred             ccCCccEEEEecCCHHHCeEEEEEE-Eeccc--eEeeEEEEEEecCC
Confidence              23457999999999999999999 77733  34666777777655

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=4.1e-18  Score=129.57  Aligned_cols=158  Identities=19%  Similarity=0.255  Sum_probs=105.5

Q ss_pred             eEEecCCcEEEEEEec--cCc--eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCcc-c
Q psy15235         31 TEIMEGAPINISCILT--IFE--QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMN-A  105 (323)
Q Consensus        31 ~~v~~G~~v~L~C~~~--~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~-~  105 (323)
                      ..+.+|++++|.|.+.  +.+  .+.|+++|..+.....          ......+.+....|+|.|+|.+.+..... .
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~----------~~~~~~l~i~~~~d~G~Y~C~~~n~~~~~~~   77 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL----------PGQKTEFKVDSDDQWGEYSCVFLPEPMGTAN   77 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC----------CCSEEEEEECGGGCCEEEEEEEESTTSCEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccc----------cCCcEEEEEechhhCeEEEEEEECCcCcEEE
Confidence            5678999999999944  444  8999999987766411          12234556666667999999998632211 1


Q ss_pred             e----eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE---CCeeccccccccCcEE----eceeEEEEeeee
Q psy15235        106 I----TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK---GNKSITEATELSGRLT----QSKDSITIRKTT  174 (323)
Q Consensus       106 ~----~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~---~~~~~~~~~~~~~~~~----~~~~~l~i~~~~  174 (323)
                      +    .|.+...+....+.+|+.++|.|.+.+.|+  .+.+.|++   ++..+.. .....++.    .....|.|.+++
T Consensus        78 l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~  154 (184)
T 3b5h_A           78 IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPP--VTDWAWYKITDSEDKALM-NGSESRFFVSSSQGRSELHIENLN  154 (184)
T ss_dssp             EEECCSCCCEESCSEEEECTTSCEEEEEECCCSSC--CCEEEEEECCSSSCEECC-TTGGGTEEEEEETTEEEEEECSCC
T ss_pred             EEEecCCceeecCCCcEEcCCCcEEEEEEECCCCC--CCeEEEEEcCCCCCEEee-cCCCCEEEEEecCCeeEEEEeecc
Confidence            1    122222344455788999999999998874  47999999   4443322 01124443    334689999999


Q ss_pred             -cCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        175 -VDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       175 -~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                       .+|+|.|+|.+ .|..+.  ....+.|.|.
T Consensus       155 ~~~d~G~Y~C~a-~N~~g~--~~~~~~l~V~  182 (184)
T 3b5h_A          155 MEADPGQYRCNG-TSSKGS--DQAIITLRVR  182 (184)
T ss_dssp             TTTSSEEEEEEE-EETTEE--EEEEEEEEEC
T ss_pred             ccccCceEEEEE-EeCCCc--ceEEEEEEEe
Confidence             89999999999 777433  3444555543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.80  E-value=3.8e-18  Score=133.90  Aligned_cols=174  Identities=17%  Similarity=0.202  Sum_probs=111.8

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc----------cccccCcEEe------ceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE----------ATELSGRLTQ------SKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~----------~~~~~~~~~~------~~~~l~i~~~  173 (323)
                      ....+.+|++++|.|.+.+.+.. .+.+.|||..  ..   +..          ...+.+|+..      ....|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFS-GYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEcCCCcEEEEEEecCcccC-CceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            44567899999999999875411 3689999843  21   100          0123456651      2468999999


Q ss_pred             ecCCCeeEEEEEEcCCCC----CCCCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CCC-cEEEEE-
Q psy15235        174 TVDDAGQYSCRLIDPKST----NTTPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PPP-TVEWRI-  241 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~----~~~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~-  241 (323)
                      +.+|+|.|.|.+ .+..+    .........|.|..    +|.+. ..+...+.+|+.++|.|.+.|. |.+ .+.|++ 
T Consensus        87 ~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  165 (223)
T 1dee_B           87 RAEDTAVYYCAK-VKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYK  165 (223)
T ss_dssp             CGGGCEEEEEEE-ESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CHHHCEEEEEEE-eccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence            999999999999 55421    00111234666763    44444 2223345689999999999876 777 899999 


Q ss_pred             CCeeeeccCCeeeeecCCCCCCcceeEEEeecCc--CCCeEEEEEEeecccC
Q psy15235        242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM--ADRGNYYCHGNNVATR  291 (323)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~d~G~y~C~a~n~~g~  291 (323)
                      +|..+... ...............+.|+|.....  +|.|.|+|.|.|..|.
T Consensus       166 ~g~~l~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~  216 (223)
T 1dee_B          166 NNSDISST-RGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGN  216 (223)
T ss_dssp             TSCBCSCE-EECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred             CCCcccee-EECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence            88776420 0000000000011246788988876  7899999999999865

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.80  E-value=1.3e-18  Score=136.30  Aligned_cols=172  Identities=20%  Similarity=0.319  Sum_probs=110.8

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc------------cccccCcEE------eceeEEEE
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE------------ATELSGRLT------QSKDSITI  170 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~------------~~~~~~~~~------~~~~~l~i  170 (323)
                      |....+.+|++++|.|.+.+.+.. .+.+.|+|++  ..   +..            ...+.+|+.      .....|.|
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFS-NYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGG-GSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccC-CccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            444568889999999999875421 4689999853  21   100            011234554      12358999


Q ss_pred             eeeecCCCeeEEEEEEcCCCCCC-CCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CCC-cEEEEEC
Q psy15235        171 RKTTVDDAGQYSCRLIDPKSTNT-TPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIG  242 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~  242 (323)
                      .+++.+|+|.|.|.+ .+..+.. .......|.|..    +|.+. .++...+.+|+.++|.|.+.|. |.| .+.|+++
T Consensus        86 ~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  164 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTR-GGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYG  164 (220)
T ss_dssp             CSCCGGGCEEEEEEE-ECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ccCCHHHCEEEEEEE-ecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence            999999999999999 6652111 111234566652    45444 2323345789999999999887 888 9999998


Q ss_pred             Ceeeec-cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        243 NDTYFR-SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       243 ~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +..... ...... .  .......+.|.|.++..+| |.|+|.|.|..|.
T Consensus       165 ~~~~~~~~~~~~~-~--~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  210 (220)
T 1pz5_B          165 ALSSGVRTVSSVL-Q--SGFYSLSSLVTVPSSTWPS-QTVICNVAHPASK  210 (220)
T ss_dssp             TCCTTEEECCCEE-E--TTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGT
T ss_pred             CcccceEEcCCcc-c--CCeEEEEEEEEEcchhcCC-ceEEEEEEECCcc
Confidence            763100 000000 0  0000135789999998866 9999999999965

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.79  E-value=6.5e-19  Score=143.84  Aligned_cols=173  Identities=17%  Similarity=0.204  Sum_probs=122.1

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .+...+....+.+|+.++|.|.+.+       .+.|++++.....     .........|.|.+++.+|+|.|+|.+ .+
T Consensus         6 ~i~~~~~~~~v~~G~~v~L~C~~~~-------~v~W~~~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~~-~~   72 (289)
T 3ejj_X            6 VIEPSGPELVVEPGETVTLRCVSNG-------SVEWDGPISPYWT-----LDPESPGSTLTTRNATFKNTGTYRCTE-LE   72 (289)
T ss_dssp             EEESCSSEEEECTTCCEEEEEECSS-------CCEEECSCSSSSE-----ECCCSSCCEEEESSCCGGGCEEEEEEC-CC
T ss_pred             EecCCCceEEECCCCCEEEEEEeCC-------cEEEccCCCceEE-----EeccCCccEEEEeeeccccCEEEEEEE-ec
Confidence            3444556667889999999998865       3899987643221     111145678999999999999999999 66


Q ss_pred             CCCCCCCceeeeeEEEecce--eeeeceeEEeeCCeEEEEEEEecCCCCc-EEEEECCeeeeccCCeeeeecCCCCCCcc
Q psy15235        189 KSTNTTPLAQADFDVIMKPT--AKLVETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTAN  265 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v~~~p~--~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (323)
                      ..+  .....+.|.|..+|.  ...+....+.+|+.+.|.|.+.+.|.+. +.|++.+........++...       ..
T Consensus        73 ~~~--~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-------~~  143 (289)
T 3ejj_X           73 DPM--AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS-------PW  143 (289)
T ss_dssp             -------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEE-------TT
T ss_pred             cCC--cceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEEC-------CC
Confidence            633  356677777776553  3345567788999999999998876665 99987444433344555554       35


Q ss_pred             eeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        266 SVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       266 ~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ..|.|.++..+|+|.|+|.|.|..+   +.....+.|.|.+
T Consensus       144 ~~L~i~~v~~~d~G~Y~C~a~~~~~---~~~~~~~~l~V~~  181 (289)
T 3ejj_X          144 RGFIIRKAKVLDSNTYVCKTMVNGR---ESTSTGIWLKVNR  181 (289)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEETTE---EEECCCEEEEEES
T ss_pred             CCEEEeecccccCEEEEEEEEeCCC---ccccccEEEEEEE
Confidence            6799999999999999999994331   2355667777764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.79  E-value=3.4e-18  Score=136.37  Aligned_cols=172  Identities=16%  Similarity=0.273  Sum_probs=112.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCC--CCceEEEEECC--eecc---c-----cccccCcEE----eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGN--KSIT---E-----ATELSGRLT----QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~--~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|.+.+.++.  ..+.+.|+|+.  ....   .     ......|+.    .....|.|.+++.+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   86 (247)
T 1svz_A            7 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   86 (247)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHH
Confidence            4566678899999999999876520  03789999842  2111   0     001134554    23458999999999


Q ss_pred             CCeeEEEEEEcCCCCCCCCceeeeeEEEecc--------------eeeeeceeEEeeCCeEEEEEEEecCC--CCcEEEE
Q psy15235        177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKP--------------TAKLVETLTVIEGEKLRLECLVVGSP--PPTVEWR  240 (323)
Q Consensus       177 d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~  240 (323)
                      |+|.|.|.+ .+..+. .......|.|..++              .+..+....+.+|++++|.|.+.+.|  .+.+.|+
T Consensus        87 D~G~Y~C~~-~n~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~  164 (247)
T 1svz_A           87 DLGIYYCFQ-GSHFPP-TFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWV  164 (247)
T ss_dssp             GCEEEEEEE-CSSSSC-EECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEE
T ss_pred             HCEEEEEEE-ccCCcc-EECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEE
Confidence            999999999 665321 11223456665432              23344455688999999999998875  4689999


Q ss_pred             ECC--eeee-----c-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        241 IGN--DTYF-----R-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       241 ~~~--~~~~-----~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      +++  ..+.     .           ...++.+...  ......+|+|.+++.+|+|.|+|.|.|.
T Consensus       165 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          165 KQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLD--TSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE--GGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEe--cCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            963  2110     0           1234433310  0113468999999999999999999996

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.79  E-value=1.3e-18  Score=136.36  Aligned_cols=173  Identities=14%  Similarity=0.176  Sum_probs=112.4

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc----------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE----------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~----------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ....+.+|++++|.|.+.+.+.. .+.+.|||..  ..   +..          ...+.+|+.      .....|+|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFS-KYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCeEecCCCcEEEEEEecCccCC-CceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            34668899999999999875421 3689999843  21   110          011245665      12468999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCC-CCceeeeeEEEe----cceeeeeceeEEeeCCeEEEEEEEecC-CC--CcEEEEECCee
Q psy15235        174 TVDDAGQYSCRLIDPKSTNT-TPLAQADFDVIM----KPTAKLVETLTVIEGEKLRLECLVVGS-PP--PTVEWRIGNDT  245 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~----~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~--~~~~W~~~~~~  245 (323)
                      +.+|+|.|.|.+ .+..... .......|.|..    +|.+.......+..|+.++|.|.+.+. |.  +.+.|++++..
T Consensus        87 ~~~DsG~Y~C~~-~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~  165 (220)
T 2fbj_H           87 RSEDTALYYCAR-LHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD  165 (220)
T ss_dssp             CGGGCEEEEEEE-EETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred             ChhhCEEEEEEE-eccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence            999999999999 5542110 112234666653    345543333345689999999999876 76  68999999876


Q ss_pred             eeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        246 YFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       246 ~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +..........  .++ ....+.|.|.....+|.|.|+|.|.|..|.
T Consensus       166 ~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~  210 (220)
T 2fbj_H          166 ITTVNFPPALA--SGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP  210 (220)
T ss_dssp             CEEEECCCEEC--SSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             cceEecCceEC--CCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCc
Confidence            52110000000  111 112356999999999999999999999865

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.79  E-value=1.9e-19  Score=142.35  Aligned_cols=174  Identities=14%  Similarity=0.279  Sum_probs=94.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc--------ccccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT--------EATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~--------~~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|.+.+.+   .+.+.|+|++  ....        .......++.    .....|.|.+++.+|+
T Consensus        29 ~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  105 (233)
T 3bqu_C           29 SPASLSMSIGEKVTIRCITSTDI---DDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDV  105 (233)
T ss_dssp             ECSBC-------CCEEEEEEEEE---SSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCC
T ss_pred             cCCeEEEecCCCEEEEEecCCcC---CCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHC
Confidence            35555678899999999998876   5689999853  2110        0011123333    3345899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEe---cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeecc-CC
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIM---KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRS-QG  251 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~-~~  251 (323)
                      |.|.|.+ .+..+.. ......+.|..   +|.+.. ++.....+|+.++|.|.+.|. |++ .+.|+++|..+... ..
T Consensus       106 G~Y~C~~-~~~~~~~-~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  183 (233)
T 3bqu_C          106 ADYYCLQ-SDNLPYT-FGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  183 (233)
T ss_dssp             SEEEEEE-CSSSSCC-BCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEE
T ss_pred             EEEEEEE-ecCCcee-ecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceE
Confidence            9999999 6653221 12223455553   455553 222233469999999999885 444 79999999876532 11


Q ss_pred             eeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        252 RIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       252 ~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ........++ ....+.|.|..+..+|.|.|+|.|.|....
T Consensus       184 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          184 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             ecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            1111100111 123467999999999999999999998743

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.79  E-value=3.6e-18  Score=134.33  Aligned_cols=170  Identities=13%  Similarity=0.067  Sum_probs=101.3

Q ss_pred             eceEEecCCcEEEEEEeccC-----ceEEEEEcCccceeecc--------------Ccce-EEEeeeeCCeEEEEEeecc
Q psy15235         29 GDTEIMEGAPINISCILTIF-----EQVKWQLNGRNINQSSV--------------DSGF-AATANLTEDNFKYSIHEAI   88 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~~~-----~~v~W~~~g~~~~~~~~--------------~~~~-~~~~~~~~~~~~l~i~~~~   88 (323)
                      .++.+.+|++|+|.|.+.+.     ..|+|+|++........              ..+. ........++..|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            45889999999999996432     26999997754322100              0011 1111223567788888876


Q ss_pred             c--CcceEEEeeccCCccceeeeeee------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc
Q psy15235         89 L--ESGYVQSSLFIPRMNAITGNYDI------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR  160 (323)
Q Consensus        89 ~--~G~Y~C~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~  160 (323)
                      .  +|.|+|.+.+..+.......+.+      .+....+.+|+.+.|.|.+.+..|  .+.|+|++++..+..... ...
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P--~p~i~W~k~~~~~~~~~~-~~~  168 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYP--QPQIQWSNNKGENIPTVE-APV  168 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBS--CCEEEEECTTSCBCCCEE-CCC
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCC--CCEEEEEECCceEcCCCc-eEE
Confidence            5  99999999987766543333322      222334678999999999988533  789999996544332100 111


Q ss_pred             EEece---eEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        161 LTQSK---DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       161 ~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      .....   ..+.+..++.+|+|.|+|.| .|..+.  ......|.|.
T Consensus       169 ~~~~~g~~~v~s~l~v~~~d~G~YtC~a-~N~~g~--~~~~~~v~v~  212 (226)
T 4f80_A          169 VADGVGLYAVAASVIMRGSSGEGVSCTI-RSSLLG--LEKTASISIA  212 (226)
T ss_dssp             EECTTSCEEEEEEEEECC----CEEEEE-EETTTT--EEEEEEECCC
T ss_pred             EECCCCcEEEEEEEEechhcCcEEEEEE-EeCCCC--eEEEEEEEEC
Confidence            11111   23345567789999999999 777433  3444455543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.79  E-value=2.3e-18  Score=136.55  Aligned_cols=169  Identities=11%  Similarity=0.079  Sum_probs=108.9

Q ss_pred             CCceEEEeeceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEe
Q psy15235         21 ADGKITYFGDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSS   97 (323)
Q Consensus        21 ~~~~i~~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~   97 (323)
                      ..+.+.......+.+|++|+|.|.+.+ ...+.|+|+|..+...... .     ........|.|.+++  |+|.|+|.+
T Consensus         6 ~kP~i~~~P~~~v~~G~~VtL~C~~~~~~~~~~w~k~g~~~~~~~~~-~-----~~~~~~~~L~I~~v~~~DsG~Y~C~~   79 (242)
T 1p6f_A            6 PKPFIWAEPHFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPK-P-----PERINKVKFYIPDMNSRMAGQYSCIY   79 (242)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTEEEEEECCS-S-----CTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEeeCCCccCCCCcEEEEEeeCCCCcEEEEEECCCcccccccc-c-----cCCcceeEEEecCCCcccCeEEEEEE
Confidence            344554433337999999999999653 4689999999776532000 0     011223456666554  599999999


Q ss_pred             eccCC----ccceee---------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEec
Q psy15235         98 LFIPR----MNAITG---------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQS  164 (323)
Q Consensus        98 ~~~~~----~~~~~~---------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~  164 (323)
                      .+..+    ++.+..         .+...+. ..+.+|+.++|.|.+.+.+    ..+.|+|+|..+..    .......
T Consensus        80 ~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~~----~~~~w~k~g~~~~~----~~~~~~~  150 (242)
T 1p6f_A           80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTAT----SMFLLLKEGRSSHV----QRGYGKV  150 (242)
T ss_dssp             EETTEECCCCCCEEEEEECCSCCCEEEEESC-SEEETTCEEEEEEECTTSC----SEEEEEECSSSCEE----EEEECSS
T ss_pred             ecCCccccCCcceEEEeecccCCCceEccCC-CccCCCCcEEEEEecCCCC----CEEEEEECCCccCc----cccCCCc
Confidence            76422    121211         1111221 2467899999999987644    59999999976653    1111245


Q ss_pred             eeEEEEeeeecCCCeeEEEEEEcCCC-CCCCCceeeeeEEEe
Q psy15235        165 KDSITIRKTTVDDAGQYSCRLIDPKS-TNTTPLAQADFDVIM  205 (323)
Q Consensus       165 ~~~l~i~~~~~~d~G~y~C~~~~~~~-~~~~~~~~~~l~v~~  205 (323)
                      ...|.|.+++.+|+|.|+|.+ .+.. .....+..+.|.|..
T Consensus       151 ~~~l~I~~v~~~d~G~Y~C~a-~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          151 QAEFPLGPVTTAHRGTYRCFG-SYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             EEEEEEEECCGGGCEEEEEEE-EEETTEECCCCCCEEEEEEC
T ss_pred             eEEEEeCCCccccCEEEEEEE-ECCCCcccCCCCCEEEEEec
Confidence            678999999999999999999 5442 123456667777765

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.79  E-value=1.7e-18  Score=133.71  Aligned_cols=167  Identities=11%  Similarity=0.069  Sum_probs=105.4

Q ss_pred             EEEe-eceEEecCCcEEEEEEeccC-------ceEEEEEcCccceeeccCcceEEEe-eeeCCeEEEEEeeccc--Ccce
Q psy15235         25 ITYF-GDTEIMEGAPINISCILTIF-------EQVKWQLNGRNINQSSVDSGFAATA-NLTEDNFKYSIHEAIL--ESGY   93 (323)
Q Consensus        25 i~~~-~~~~v~~G~~v~L~C~~~~~-------~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~--~G~Y   93 (323)
                      +..+ .++.+.+|+++.|.|.+.+.       +.+.|+|++......  ..+..+.. ....+...|.|.+++.  +|.|
T Consensus         5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~--~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (202)
T 3bp6_B            5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQ--SERATLLEEQLPLGKALFHIPSVQVRDSGQY   82 (202)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCB--CSSCEECGGGGGGTEEEEEECSCCGGGCEEE
T ss_pred             EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCccccc--CCceEEeeccccCCeeEEEECCCCHHHCcEE
Confidence            4334 46789999999999995443       689999944332221  11111111 1123556777777654  9999


Q ss_pred             EEEeeccCCccceeeeeee-----CCcee--EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--ec
Q psy15235         94 VQSSLFIPRMNAITGNYDI-----EPKYK--VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QS  164 (323)
Q Consensus        94 ~C~~~~~~~~~~~~~~~~~-----~~~~~--~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~  164 (323)
                      +|.+.+..+.......+.+     .|...  .+.+|+.+.|.|.+.+.|   .+.+.|++++..+..    .....  ..
T Consensus        83 ~C~~~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~g~P---~p~v~W~~~~~~~~~----~~~~~~~~~  155 (202)
T 3bp6_B           83 RCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYP---LAEVSWQNVSVPANT----SHIRTPEGL  155 (202)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEEEBS---CCEEEETTCCSCCEE----EEEECTTSC
T ss_pred             EEEEEeCCCcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEccccC---CceEEEEeCCCCccC----ceeeCCCCC
Confidence            9999887665433333333     12222  245799999999999977   789999998876543    11111  22


Q ss_pred             eeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        165 KDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       165 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      ...+.+..+..+|.|.|+|.| .|..+.  ....+.|.|
T Consensus       156 ~~~~~i~~v~~~d~G~Y~C~a-~N~~g~--~~~~~~l~v  191 (202)
T 3bp6_B          156 YQVTSVLRLKPQPSRNFSCMF-WNAHMK--ELTSAIIDP  191 (202)
T ss_dssp             EEEEEEEEECCCTTCCEEEEE-EETTTT--EEEEEEECC
T ss_pred             EEEEEEEEEEcCCCCEEEEEE-EcCCcc--cccEEEEEe
Confidence            345667788899999999999 777443  333444443

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.79  E-value=2e-18  Score=134.28  Aligned_cols=168  Identities=13%  Similarity=0.238  Sum_probs=108.9

Q ss_pred             eeceEEecCCcEEEEEEec--cCceEEEEEcCccceeecc--------CcceEEEeeeeCCeEEEEEeec--ccCcceEE
Q psy15235         28 FGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSV--------DSGFAATANLTEDNFKYSIHEA--ILESGYVQ   95 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C   95 (323)
                      +.++.+.+|+++.|.|.+.  +.+.+.|++++..+.....        .....   .....  .|.|.++  .|+|.|+|
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~--~L~i~~v~~~D~G~Y~C   82 (212)
T 1f97_A            8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV---TFSSS--GITFSSVTRKDNGEYTC   82 (212)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTE---EEETT--EEEESCCCGGGCEEEEE
T ss_pred             CCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcE---Eeece--eEEEcccCcccCeEEEE
Confidence            4567899999999999954  6789999998877432100        01111   11123  4555554  45999999


Q ss_pred             EeeccCCc--cceeeeeee--CCce------eEEecCCcEEEEEE-eecCCCCCCceEEEEECCe-eccccccc-----c
Q psy15235         96 SSLFIPRM--NAITGNYDI--EPKY------KVFEYRVPFTLKCN-VTSPPPGDDYQIVWYKGNK-SITEATEL-----S  158 (323)
Q Consensus        96 ~~~~~~~~--~~~~~~~~~--~~~~------~~~~~g~~v~l~C~-~~~~~~~~~~~i~W~~~~~-~~~~~~~~-----~  158 (323)
                      .+.+..+.  ......+.+  .|..      ..+..|+.++|.|. +.+.|   .+.+.|++++. .+......     .
T Consensus        83 ~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~i~W~~~~~~~l~~~~~~~~~~~~  159 (212)
T 1f97_A           83 MVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP---PSEYSWFKDGISMLTADAKKTRAFMN  159 (212)
T ss_dssp             EEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBS---CCEEEEEETTEESBC-----CBSCSS
T ss_pred             EEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcC---CCEEEEEeCCcccccccccccccccC
Confidence            99987552  222222222  2221      23678999999999 67777   68999999998 77652111     0


Q ss_pred             CcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        159 GRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       159 ~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      .++.  .....|.|.++..+|+|.|+|.| .|..+....+..+.|.|.
T Consensus       160 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQA-QNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             SCEEECTTTCCEEESSCCGGGCEEEEEEE-ECSSSCCEECCCEEEEEE
T ss_pred             ceeEecCCCceEEEEecChhhCcEEEEEE-ccccCCccccceEEEEEE
Confidence            1222  34678999999999999999999 787555433555555554

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.79  E-value=3.9e-19  Score=135.44  Aligned_cols=130  Identities=18%  Similarity=0.334  Sum_probs=93.9

Q ss_pred             EEecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEee---cccCcceEEEeeccCCccceee
Q psy15235         32 EIMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHE---AILESGYVQSSLFIPRMNAITG  108 (323)
Q Consensus        32 ~v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~G~Y~C~~~~~~~~~~~~~  108 (323)
                      .+.+|++++|.|.+.+.+.++|+|+|..+...            .++  .|.|.+   ..|+|.|+|.+.+..+......
T Consensus        10 v~~~G~~v~L~C~~~~~~~i~W~k~g~~l~~~------------~~~--~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~   75 (186)
T 1jbj_A           10 VSISGTSVELTCPLDSDENLKWEKNGQELPQK------------HDK--HLVLQDFSEVEDSGYYVCYTPASNKNTYLYL   75 (186)
T ss_dssp             EEEETTEEEEECSSCCCTTCEEEETTEEECSC------------CCS--EEEEESCCTTTSCEEEEEECSSCCCCCCEEE
T ss_pred             EEeCCcEEEEEEeCCCCCceEEEECCEECCCC------------CCC--EEEECCCCccccCEEEEEEEEeCCCcEEEEE
Confidence            35789999999997666679999999887663            122  355555   4559999999988766532221


Q ss_pred             eeee----CCc--------------------------e---eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc
Q psy15235        109 NYDI----EPK--------------------------Y---KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT  155 (323)
Q Consensus       109 ~~~~----~~~--------------------------~---~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~  155 (323)
                      .+.+    .+.                          .   ..+.+|+++.|.|.+   |   .+.|.|+|+|..+..  
T Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p---~p~i~W~k~g~~i~~--  147 (186)
T 1jbj_A           76 KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---T---DKTIKWLKDGSIISP--  147 (186)
T ss_dssp             CCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---S---CSCEEEEETTEECCC--
T ss_pred             EEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---C---CCeEEEEECCEECcc--
Confidence            1111    000                          0   123489999999988   4   579999999998864  


Q ss_pred             cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        156 ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       156 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                        ..   .....|.|.++..+|+|.|+|.| .|.
T Consensus       148 --~~---~~~~~L~i~~v~~~D~G~Y~C~a-~N~  175 (186)
T 1jbj_A          148 --LN---ATKNTWNLGNNAKDPRGTYQCQG-AKE  175 (186)
T ss_dssp             --SS---CCSSCCEEEETTSCCEEEEEEEE-SSC
T ss_pred             --cC---CCcceEEECCCCcCcCEEEEEEE-EcC
Confidence              11   14567999999999999999999 777

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.79  E-value=1.1e-17  Score=136.16  Aligned_cols=184  Identities=15%  Similarity=0.229  Sum_probs=106.0

Q ss_pred             CcchhHHHHHH-HHHHhhhccCCceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e-------
Q psy15235          1 MSMIHLCLSLL-AIFVHQSISADGKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S-------   63 (323)
Q Consensus         1 m~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~-------   63 (323)
                      |.|+.+.+.++ +++......+...+..+.++.+.+|++|+|.|.+.+    .+.+.|+|++  ..+..   .       
T Consensus         5 ~~m~~~~~ll~l~ll~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~   84 (282)
T 1qok_A            5 MKYLLPTAAAGLLLLAAQPAMAQVKLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDT   84 (282)
T ss_dssp             ----------------------CCEEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEE
T ss_pred             eeeccchHHHHHHHHhhccccceEEEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCcc
Confidence            66654433322 222233334566677888899999999999999542    4789999964  22210   0       


Q ss_pred             ----ccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEeeccCC---cc------ceeee-------------------
Q psy15235         64 ----SVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSLFIPR---MN------AITGN-------------------  109 (323)
Q Consensus        64 ----~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~~~~~---~~------~~~~~-------------------  109 (323)
                          ....+.....+.......|.|.+++.  +|.|+|.+.+..+   ..      .+.+.                   
T Consensus        85 ~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~  164 (282)
T 1qok_A           85 EYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENV  164 (282)
T ss_dssp             EECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCC
T ss_pred             ccCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceE
Confidence                01122222222234567788887764  9999999987653   11      11111                   


Q ss_pred             eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc--------cccccCcEE----eceeEEEEeeeec
Q psy15235        110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE--------ATELSGRLT----QSKDSITIRKTTV  175 (323)
Q Consensus       110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~  175 (323)
                      +...+....+.+|++++|.|.+.+.+    +.+.|+|  ++..+..        ......++.    .....|.|.+++.
T Consensus       165 ~~~~p~~~~v~~G~~v~L~C~~~~~~----~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  240 (282)
T 1qok_A          165 LTQSPAIMSASPGEKVTITCSASSSV----SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEA  240 (282)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCC----SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EecCCCEEEEcCCCcEEEEEEecCCC----ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCCh
Confidence            11123344577899999999998876    3899999  5554311        001134443    2456899999999


Q ss_pred             CCCeeEEEEEEcCC
Q psy15235        176 DDAGQYSCRLIDPK  189 (323)
Q Consensus       176 ~d~G~y~C~~~~~~  189 (323)
                      +|+|.|+|.+ .+.
T Consensus       241 ~DsG~Y~C~a-~~~  253 (282)
T 1qok_A          241 EDAATYYCQQ-RSS  253 (282)
T ss_dssp             GGCEEEEEEE-CSS
T ss_pred             hHCEEEEEEE-eeC
Confidence            9999999999 554

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.79  E-value=1.2e-17  Score=131.78  Aligned_cols=185  Identities=19%  Similarity=0.242  Sum_probs=111.6

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c---------cccccCcEE------eceeEEEEeeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E---------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~---------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ....+.+|++++|.|.+.+.+.. ...+.|||..  ....   .         ...+.+|+.      .....|+|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (232)
T 1dn0_B            8 GAGLLKPSETLSLTCAVYGGSFS-DYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (232)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCS-SCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEeCCCcEEEEEEEccccCC-CceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            34567889999999999875321 4689999842  2111   0         011245665      124589999999


Q ss_pred             cCCCeeEEEEEEcCCCC--C--CCCceeeeeEEEe----cceeee-eceeEEeeC-CeEEEEEEEecC-CCC-cEEEEE-
Q psy15235        175 VDDAGQYSCRLIDPKST--N--TTPLAQADFDVIM----KPTAKL-VETLTVIEG-EKLRLECLVVGS-PPP-TVEWRI-  241 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~--~--~~~~~~~~l~v~~----~p~~~~-~~~~~~~~g-~~~~l~C~~~g~-p~~-~~~W~~-  241 (323)
                      .+|+|.|.|.+ .+..+  .  ........|.|..    +|.+.. .+...+..| +.++|.|.+.|. |.+ .+.|++ 
T Consensus        87 ~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~  165 (232)
T 1dn0_B           87 AADTAVYYCAR-PPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYK  165 (232)
T ss_dssp             GGGCEEEEEEE-CSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cccCEEEEEEE-ecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcC
Confidence            99999999999 53111  1  0112234666654    344442 223334578 999999999875 776 899999 


Q ss_pred             CCeeeeccCCeeeeecCCCCCCcceeEEEeecCc--CCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        242 GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM--ADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~--~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      +|..+... ...............+.|+|.....  +|.|.|+|.|.|..+.    ......+.|.+
T Consensus       166 ~g~~l~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~----~~~~~~i~~~~  227 (232)
T 1dn0_B          166 NNSDISST-RGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN----KEKNVPLPVIA  227 (232)
T ss_dssp             TSCEECCE-EECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC----EEEEEECCC--
T ss_pred             CCCceeeE-EECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCC----cceeEecCCCC
Confidence            88776430 0000000000011246799998887  8899999999999955    55555555444

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.78  E-value=1.8e-18  Score=134.66  Aligned_cols=168  Identities=14%  Similarity=0.244  Sum_probs=106.2

Q ss_pred             eeceEEecCCcEEEEEEecc------CceEEEEEcCcc----------------cee--eccCcceEEEe-eeeCCeEEE
Q psy15235         28 FGDTEIMEGAPINISCILTI------FEQVKWQLNGRN----------------INQ--SSVDSGFAATA-NLTEDNFKY   82 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~~------~~~v~W~~~g~~----------------~~~--~~~~~~~~~~~-~~~~~~~~l   82 (323)
                      +..+.+.+|++++|.|.+.+      .+.+.|++++..                +..  .....+..+.. +...+...|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            45678999999999999543      358999994321                110  00011111111 112345566


Q ss_pred             EEeecc--cCcceEEEeeccCCccceeeeeee--CCcee------EEecCCcEEEEEEe-ecCCCCCCceEEEEECC--e
Q psy15235         83 SIHEAI--LESGYVQSSLFIPRMNAITGNYDI--EPKYK------VFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGN--K  149 (323)
Q Consensus        83 ~i~~~~--~~G~Y~C~~~~~~~~~~~~~~~~~--~~~~~------~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~--~  149 (323)
                      .|.+++  |+|.|+|.+.+..+.......+.+  .|...      .+..|+.++|.|.+ .+.|   .+.+.|++++  .
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p---~~~v~W~~~~~~~  163 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSL---PLQFEWQKLSDSQ  163 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCS---SCEEEEEECSTTC
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCC---CCEEEEEECCCCC
Confidence            776665  499999999887655433333333  22211      25679999999999 6777   7899999954  3


Q ss_pred             eccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe
Q psy15235        150 SITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM  205 (323)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~  205 (323)
                      .+..    ..........|.|.++..+|+|.|+|.| .|..+  .....+.|.|..
T Consensus       164 ~~~~----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~N~~g--~~~~~~~l~V~~  212 (214)
T 3jz7_A          164 TMPT----PWLAEMTSPVISVKNASSEYSGTYSCTV-QNRVG--SDQCMLRLDVVP  212 (214)
T ss_dssp             CCCG----GGGGGTTSSEEEECSCCGGGCEEEEEEE-ECSSC--EEEEEEEECCBC
T ss_pred             ccCc----cceeccCCCEEEEecCCHHHCEEEEEEE-EcCCC--cEEEEEEEEEeC
Confidence            3332    1222234568999999999999999999 77743  345555555553

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.78  E-value=3.8e-18  Score=137.84  Aligned_cols=174  Identities=17%  Similarity=0.274  Sum_probs=111.7

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc-----------ccccc-CcEE-----eceeEEEEeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE-----------ATELS-GRLT-----QSKDSITIRKT  173 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~-----------~~~~~-~~~~-----~~~~~l~i~~~  173 (323)
                      .+....+.+|++++|.|.+.. +   .+.+.|||  .+.....           ..... +|+.     .....|.|.++
T Consensus        32 ~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v  107 (268)
T 3pl6_D           32 TPSNKVTEKGKYVELRCDPIS-G---HTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRT  107 (268)
T ss_dssp             CCSEEEEETTCCEEEEEBCBT-T---CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSC
T ss_pred             CCCEEEecCCCCEEEEEEeCC-C---CceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCC
Confidence            566677889999999999863 4   57999998  2221110           00111 4554     23678999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe------cceeee--eceeEEeeCCeEEEEEEEecCCC-C-cEEEEECC
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM------KPTAKL--VETLTVIEGEKLRLECLVVGSPP-P-TVEWRIGN  243 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~------~p~~~~--~~~~~~~~g~~~~l~C~~~g~p~-~-~~~W~~~~  243 (323)
                      +.+|+|.|.|.+ .+............+.|..      +|.+..  +....+.+|+.++|.|.+.|.|+ + .+.|+++|
T Consensus       108 ~~~D~G~Y~C~~-~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g  186 (268)
T 3pl6_D          108 ERGDSAVYLCAT-SALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  186 (268)
T ss_dssp             CGGGCEEEEEEE-ESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESS
T ss_pred             CcccCEEEEEEE-ecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECC
Confidence            999999999999 5531122233344566654      444332  22233456999999999988654 4 89999999


Q ss_pred             eeeeccCCeee-----eecCCCC-CCcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235        244 DTYFRSQGRIK-----LSEHPEK-GTANSVLQIDEATMAD-RGNYYCHGNNVATR  291 (323)
Q Consensus       244 ~~~~~~~~~~~-----~~~~~~~-~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~  291 (323)
                      ..+........     .....++ ....+.|.|.....+| .|.|+|.|.|....
T Consensus       187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          187 KEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             SEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            88753211100     0000001 1124678888888888 99999999998754

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.78  E-value=3.3e-18  Score=133.32  Aligned_cols=172  Identities=12%  Similarity=0.084  Sum_probs=105.5

Q ss_pred             eeceEEecC--CcEEEEEEec-cCceEEEEEc---CccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccC
Q psy15235         28 FGDTEIMEG--APINISCILT-IFEQVKWQLN---GRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIP  101 (323)
Q Consensus        28 ~~~~~v~~G--~~v~L~C~~~-~~~~v~W~~~---g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~  101 (323)
                      +..+.+.+|  ++++|.|.+. |.+.++|+++   |..+...     ..+..+ ....+.|......|+|.|+|.+.+..
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~p~~~v~w~~~~~~g~~~~~~-----~~~~~~-~~~~l~I~~v~~~D~G~Y~C~a~n~~   87 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDG-----NRISWD-SKKGFTIPSYMISYAGMVFCEAKIND   87 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSSTTCCEEEEEETTTEEECCCS-----SSCEEE-TTTEEEEEGGGTTTCSEEEEEEC---
T ss_pred             ceEEEEecCCCccEEEeeccCCCCcEEEEEhhcCCCccccCC-----Cccccc-CCccEEEccCChhcCceEEEEEEECC
Confidence            467889999  9999999954 5689999985   4444332     111111 13334444444455999999998743


Q ss_pred             Ccc-----ce------eeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc---ccC--c---E
Q psy15235        102 RMN-----AI------TGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE---LSG--R---L  161 (323)
Q Consensus       102 ~~~-----~~------~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~---~~~--~---~  161 (323)
                      ...     .+      .+.+.+ .+....+.+|++++|.|.+.+.++. .+.+.|++++..+.....   ...  .   .
T Consensus        88 ~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~  166 (213)
T 2x1w_L           88 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV-GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM  166 (213)
T ss_dssp             -CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTB-CCEEEEECSCSSCCSEEEEEEEECCCSSCSC
T ss_pred             eeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCC-ceEEEEEecCCccceEEEeccccccccCccc
Confidence            321     11      112222 2233367889999999999985421 358999998876432100   000  0   0


Q ss_pred             EeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEeccee
Q psy15235        162 TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA  209 (323)
Q Consensus       162 ~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~  209 (323)
                      ......|.|.+++.+|+|.|+|.| .|..  +.....+.|.|..+|.+
T Consensus       167 ~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~--g~~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          167 KKFLSTLTIDGVTRSDQGLYTCAA-SSGL--MTKKNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEEEEEEESSCCGGGCEEEEEEE-ECSS--CEEEEEEEEEEEC----
T ss_pred             eeeeEEEEECCCCcccCEEEEEEE-ecCC--CcEEEEEEEEEeccccc
Confidence            123457999999999999999999 7774  34577778888877765

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.78  E-value=5e-18  Score=130.69  Aligned_cols=157  Identities=10%  Similarity=0.043  Sum_probs=95.3

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccC
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIP  101 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~  101 (323)
                      +.+.......+.+|++++|.|.+.+ ...+.|+|+|..+.......    ........+.|......|+|.|+|.+.+..
T Consensus         6 P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (198)
T 1ugn_A            6 PTLWAEPGSVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIP----QELVKKGQFPIPSITWEHTGRYRCYYGSDT   81 (198)
T ss_dssp             CEEEEESCSEEETTCCEEEEEECCTTCCCEEEEESSSCCHHHHTSC----HHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CeEeccCCCcccCCCcEEEEEEecCCCcEEEEEECCcccccccccc----ccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence            3444444457899999999999543 34799999998775321000    001123333333334455999999998765


Q ss_pred             -C--c--cceeeee---------eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---ec
Q psy15235        102 -R--M--NAITGNY---------DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---QS  164 (323)
Q Consensus       102 -~--~--~~~~~~~---------~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~  164 (323)
                       +  .  ..+...+         ...+. ..+.+|+.++|.|.+.+.+    +.+.|+|+|..+..... .....   ..
T Consensus        82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~~----~~v~W~k~g~~~~~~~~-~~~~~~~~~~  155 (198)
T 1ugn_A           82 AGRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQCDSQVAF----DGFILCKEGEDEHPQCL-NSQPHARGSS  155 (198)
T ss_dssp             TEECCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEEEECSSCC----SEEEEEEC------CEE-EC------CC
T ss_pred             CCcccCCccEEEEEcccccCCccccCCc-cccCCCCcEEEEEecCCCC----cEEEEEECCCccCCccc-cccccCCCcc
Confidence             2  1  1111111         11111 3467899999999998874    59999999987643100 00011   23


Q ss_pred             eeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        165 KDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       165 ~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ...|.|.+++.+|+|.|+|.| .|..
T Consensus       156 ~~~L~i~~v~~~D~G~Y~C~a-~n~~  180 (198)
T 1ugn_A          156 RAIFSVGPVSPSRRWWYRCYA-YDSN  180 (198)
T ss_dssp             EEEEEECCCCTTSCEEEEEEE-ECTT
T ss_pred             eeEEEecccCcccCeEEEEEE-EeCC
Confidence            578999999999999999999 6653

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.78  E-value=7.3e-18  Score=132.12  Aligned_cols=175  Identities=18%  Similarity=0.236  Sum_probs=110.5

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---------------ccccccCcEE------eceeEEEE
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---------------EATELSGRLT------QSKDSITI  170 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---------------~~~~~~~~~~------~~~~~l~i  170 (323)
                      +....+.+|++++|.|.+.+.+.. ...+.|||..  ....               ....+.+|+.      .....|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            7 SGGGLVQPGGSLKLSCAASGFTLS-GSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             ESCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             cCCEEEcCCCCEEEEEEccccccc-ccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            334568889999999999874311 4699999832  1110               0111235554      22447999


Q ss_pred             eeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEec-CCC-C-cEEEEEC
Q psy15235        171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVG-SPP-P-TVEWRIG  242 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g-~p~-~-~~~W~~~  242 (323)
                      .+++.+|+|.|.|.+ .+............+.|.    .+|.+. ..+... .+|+.++|.|.+.+ .|. + .+.|+++
T Consensus        86 ~~v~~~DsG~Y~C~~-~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~  163 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVI-RGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSES  163 (221)
T ss_dssp             CSCCGGGCEEEEEEE-ESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred             CCCCHHHCEEEEEEE-ECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence            999999999999999 554211122333455654    234444 222223 68999999999987 676 4 8999999


Q ss_pred             CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        243 NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +..+...................+.|+|.....+|.|.|+|.|.|..+.
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          164 GQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             STTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             CEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            8766321110000000000112357999999999999999999998844

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.78  E-value=9.5e-18  Score=135.05  Aligned_cols=173  Identities=15%  Similarity=0.263  Sum_probs=113.7

Q ss_pred             eCCceeEEecCCcEEEEEEeecCCCC---CCceEEEEEC--Ceecc---c-----cccccCcEE----eceeEEEEeeee
Q psy15235        112 IEPKYKVFEYRVPFTLKCNVTSPPPG---DDYQIVWYKG--NKSIT---E-----ATELSGRLT----QSKDSITIRKTT  174 (323)
Q Consensus       112 ~~~~~~~~~~g~~v~l~C~~~~~~~~---~~~~i~W~~~--~~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~  174 (323)
                      ..|....+.+|++++|.|.+.+.++.   ..+.+.|+|+  +..+.   .     ......|+.    .....|.|.+++
T Consensus        10 q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~   89 (264)
T 2gjj_A           10 QTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVK   89 (264)
T ss_dssp             EECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             ecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCC
Confidence            35666678899999999999876510   0368999985  22111   0     001234554    235689999999


Q ss_pred             cCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc--------------------eeeeeceeEEeeCCeEEEEEEEecCCC
Q psy15235        175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP--------------------TAKLVETLTVIEGEKLRLECLVVGSPP  234 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p--------------------~~~~~~~~~~~~g~~~~l~C~~~g~p~  234 (323)
                      .+|+|.|.|.+ .+.... .......|.|..+|                    .+..++...+.+|++++|.|.+.+.|.
T Consensus        90 ~~DsG~Y~C~~-~~~~~~-~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~  167 (264)
T 2gjj_A           90 AEDLAVYYCQQ-YSNYPW-TFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSF  167 (264)
T ss_dssp             GGGCEEEEEEE-CSSSSC-EECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCG
T ss_pred             HHHCEEEEEEE-ecCCcc-EecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCcc
Confidence            99999999999 665221 11223466666542                    222334457889999999999988764


Q ss_pred             --CcEEEEECC--ee---ee---c----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        235 --PTVEWRIGN--DT---YF---R----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       235 --~~~~W~~~~--~~---~~---~----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                        +.+.|+++.  ..   +.   .          ...++.+...  .......|+|.+++.+|+|.|+|.|.|.
T Consensus       168 ~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          168 TGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD--TSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             GGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEc--CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence              789999963  21   11   0          0223333211  1113578999999999999999999995

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.78  E-value=5.1e-19  Score=139.88  Aligned_cols=164  Identities=14%  Similarity=0.198  Sum_probs=85.3

Q ss_pred             CCceEEE-eeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceee---------ccCcceEEEeeeeCCeEEEEEee
Q psy15235         21 ADGKITY-FGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQS---------SVDSGFAATANLTEDNFKYSIHE   86 (323)
Q Consensus        21 ~~~~i~~-~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~   86 (323)
                      ....+.. +..+.+.+|++|+|.|.+.  +.+.+.|+|++  ..+...         ....+  +......+...|.|.+
T Consensus        22 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~   99 (233)
T 3bqu_C           22 AETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSR--FSSSGYGTDFVFTIEN   99 (233)
T ss_dssp             -CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTT--CCCCEEEEEEEEC---
T ss_pred             cceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCcc--EEeeccCCEEEEEECC
Confidence            3444554 6778899999999999943  45789999954  222110         00111  1111123445666666


Q ss_pred             cc--cCcceEEEeeccCCcc-----ceeeeeee-CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeecc
Q psy15235         87 AI--LESGYVQSSLFIPRMN-----AITGNYDI-EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT  152 (323)
Q Consensus        87 ~~--~~G~Y~C~~~~~~~~~-----~~~~~~~~-~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~  152 (323)
                      ++  |+|.|+|.+.+..+..     .+.+.... .|.+..      ...|++++|.|.+.+.+|. ...+.|+++|..+.
T Consensus       100 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~~~  178 (233)
T 3bqu_C          100 MLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQ  178 (233)
T ss_dssp             --CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS-CEEEEEEEC-----
T ss_pred             CCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCC-ceEEEEEECCeeCC
Confidence            54  5999999998754321     11111000 222222      1248999999999986541 24899999998775


Q ss_pred             cc-cc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        153 EA-TE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       153 ~~-~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .. ..       .++.+ .....|.|.....+|+|.|+|.| .|.
T Consensus       179 ~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~Y~C~a-~n~  221 (233)
T 3bqu_C          179 NGVLNSWTDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THK  221 (233)
T ss_dssp             CCEEEEECCCCTTTCCE-EEEEEEEEEHHHHHTCCCEEEEE-EEC
T ss_pred             CCceEecCCccCCCCCE-EEEEEEEECHHHhCCCCCEEEEE-EeC
Confidence            42 00       00111 23356889988889999999999 665

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.78  E-value=1.1e-18  Score=131.67  Aligned_cols=142  Identities=15%  Similarity=0.162  Sum_probs=95.7

Q ss_pred             ceEEecCCcEEEEEEe----ccCceEEEEEcCccceeecc------CcceEEEeeeeCCeEEEEEeec--ccCcceEEEe
Q psy15235         30 DTEIMEGAPINISCIL----TIFEQVKWQLNGRNINQSSV------DSGFAATANLTEDNFKYSIHEA--ILESGYVQSS   97 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~----~~~~~v~W~~~g~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~   97 (323)
                      .+.+.+|++|+|.|..    .+.+.+.|+|++..+.....      ..++ +.. ..++.  |.|.++  .|+|.|+|.+
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r-~~~-~~~gs--L~I~~v~~~D~G~Y~C~~   80 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGA-FEI-LANGD--LKIKNLTRDDSGTYNVTV   80 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTT-EEE-CTTSC--EEESSCCGGGCEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCe-EEE-CCCCc--EEEcccccccCEEEEEEE
Confidence            4668899999999952    23568999999876542110      1111 111 12344  555555  4599999999


Q ss_pred             eccCCcc--ceeeeeee---CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEee
Q psy15235         98 LFIPRMN--AITGNYDI---EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRK  172 (323)
Q Consensus        98 ~~~~~~~--~~~~~~~~---~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~  172 (323)
                      .+..+..  .....+.+   .....+...+..++|.|.+.+.|   .+.|.|+++|..+..    ..       .+.|..
T Consensus        81 ~n~~g~~~~~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g~p---~p~i~W~~~g~~l~~----~~-------~~~i~~  146 (176)
T 1hng_A           81 YSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGT---DVELKLYQGKEHLRS----LR-------QKTMSY  146 (176)
T ss_dssp             EETTCCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCS---SCEEEEEETTEEEEE----ES-------SSEEEE
T ss_pred             EeCCCCEEEEEEEEEEEeCCCCCCEEEecCCcEEEEEEecCCC---CcEEEEEECCEECCC----CC-------cEEEEE
Confidence            9877664  22233333   12233444466799999999988   689999999988865    11       245567


Q ss_pred             eecCCCeeEEEEEEcCCC
Q psy15235        173 TTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~  190 (323)
                      +..+|+|.|+|.| .|..
T Consensus       147 ~~~~d~G~Y~C~a-~N~~  163 (176)
T 1hng_A          147 QWTNLRAPFKCKA-VNRV  163 (176)
T ss_dssp             ECSCCSSCEEEEE-EETT
T ss_pred             EEccCCeEEEEEE-EecC
Confidence            8899999999999 7774

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.78  E-value=1.7e-17  Score=133.74  Aligned_cols=164  Identities=15%  Similarity=0.192  Sum_probs=117.2

Q ss_pred             EEecCCcEEEEEEeecCCCCCCc--eEEEEECCeeccccccccCcEEeceeEEEEeee---ecCCCee--EEEEEEcCCC
Q psy15235        118 VFEYRVPFTLKCNVTSPPPGDDY--QIVWYKGNKSITEATELSGRLTQSKDSITIRKT---TVDDAGQ--YSCRLIDPKS  190 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~~~~~~~~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G~--y~C~~~~~~~  190 (323)
                      .+.+|+.++|.|.+.+..|  .+  .|.|++++..+..      ........+.+..+   +.+|+|.  |+|.+ .+..
T Consensus        14 ~v~~G~~v~l~C~~~g~~p--~p~~~v~W~k~~~~l~~------~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a-~n~~   84 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFP--VSEAQVHLALGDQRLNP------TVTYGNDSFSAKASVSVTAEDEGTQRLTCAV-ILGN   84 (265)
T ss_dssp             EEETTEEEEEEEEEESCSC--GGGCEEEEEETTEECCC------EEEECSSEEEEEEEEEECGGGCEEEEEEEEE-EETT
T ss_pred             eEecCCCEEEEEEccCCCC--CcceEEEEEeCCEECCc------eEeeCCCeEEEEeecccccccCCcceEEEEE-ecCC
Confidence            5778999999999998332  45  9999999988754      22222335555554   6788885  99999 6663


Q ss_pred             CCCCCceeeeeEEEe--cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeE
Q psy15235        191 TNTTPLAQADFDVIM--KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL  268 (323)
Q Consensus       191 ~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  268 (323)
                      +  .......|.|..  +|.+. .....+.+|+.+.|.|.+.  |.+.+.|  +|..+....             ....|
T Consensus        85 ~--~~~~~~~l~V~~~p~p~~~-~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~-------------~~~~l  144 (265)
T 2oz4_A           85 Q--SQETLQTVTIYSFPAPNVI-LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG-------------PRAQL  144 (265)
T ss_dssp             E--EEEEEEEEEEECCCCCEEE-ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS-------------SEECC
T ss_pred             C--CcEEEEEEEEeCCCCceee-cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC-------------CcEEE
Confidence            3  345667777765  34444 3356678899999999998  8899999  776652111             25678


Q ss_pred             EEeecCcCCCeEEEEEEeecc-cCCCCCceeEEEEEEcceecCc
Q psy15235        269 QIDEATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       269 ~i~~v~~~d~G~y~C~a~n~~-g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      .|..+..+|.|.|+|.|.|.. |. .......+.|.|..+|...
T Consensus       145 ~i~~~~~~~~g~Y~C~a~n~~~g~-~~~~s~~~~l~V~~~p~~~  187 (265)
T 2oz4_A          145 LLKATPEDNGRSFSCSATLEVAGQ-LIHKNQTRELRVLYGPRLD  187 (265)
T ss_dssp             EEECCGGGTTEEEEEEEEEECSSS-EEEEEEEEEEEEEEEEECC
T ss_pred             EEccccccCCceEEEEEEcCCCCC-cccccccEEEEEEeCCccc
Confidence            899999999999999998654 44 1122367788888777653

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.78  E-value=7.6e-18  Score=134.17  Aligned_cols=172  Identities=17%  Similarity=0.308  Sum_probs=109.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--------------Ceecccccccc-CcEE-----eceeEEEEee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--------------NKSITEATELS-GRLT-----QSKDSITIRK  172 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--------------~~~~~~~~~~~-~~~~-----~~~~~l~i~~  172 (323)
                      .|....+.+|++++|.| ..+.+   .+.+.|||.              +..... .... +|+.     .....|.|.+
T Consensus         8 ~p~~v~v~~G~~v~L~C-~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~sL~I~~   82 (245)
T 4ei6_B            8 IPSHQIIDMGQMVTLNC-DPVSN---HLYFYWYKQILGQQMEFLVNFYNGKVMEK-SKLFKDQFSVERPDGSYFTLKIQP   82 (245)
T ss_dssp             ECSEEEEETTCCEEEEE-ECCTT---CCEEEEEEEETTTEEEEEEEEETTEEEEE-CTTCCTTEEEECCTTSCEEEEECS
T ss_pred             CCceEEecCCCCEEEEE-EcCCC---CCEEEEEEECCCCCcEEEEEECCCceecc-CCCccCCEEEEeccCceEEEEECC
Confidence            45666788999999999 55555   679999981              111111 1111 5554     2345899999


Q ss_pred             eecCCCeeEEEEEEcCCCC--CCCCceeeeeEEEe------cceeee--eceeEEeeCCeEEEEEEEecC-CCC-cEEEE
Q psy15235        173 TTVDDAGQYSCRLIDPKST--NTTPLAQADFDVIM------KPTAKL--VETLTVIEGEKLRLECLVVGS-PPP-TVEWR  240 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~------~p~~~~--~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~  240 (323)
                      ++.+|+|.|.|.+ .+...  .........+.|..      +|.+..  +....+.+|+.++|.|.+.|. |++ .+.|+
T Consensus        83 v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  161 (245)
T 4ei6_B           83 TALEDSAVYFCAS-SFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (245)
T ss_dssp             CCGGGCEEEEEEE-ECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCHhHCEEEEEEE-ccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence            9999999999999 54211  11222344566652      444432  222334569999999999884 555 89999


Q ss_pred             ECCeeeeccCCeeeee---cC-C-CCC--CcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235        241 IGNDTYFRSQGRIKLS---EH-P-EKG--TANSVLQIDEATMAD-RGNYYCHGNNVATR  291 (323)
Q Consensus       241 ~~~~~~~~~~~~~~~~---~~-~-~~~--~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~  291 (323)
                      ++|..+.... +....   .. . .++  ...+.|.|.....+| .|.|+|.|.|....
T Consensus       162 ~~g~~l~~~~-~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          162 VNGKEVHSGV-CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             ETTEEECTTE-EECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             ECCEECCCCc-ccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            9998875321 11100   00 0 011  123568999998888 89999999998744

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.78  E-value=9e-18  Score=134.92  Aligned_cols=173  Identities=16%  Similarity=0.236  Sum_probs=105.6

Q ss_pred             eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec---cccc----------ccc-CcEE-----eceeEE
Q psy15235        110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI---TEAT----------ELS-GRLT-----QSKDSI  168 (323)
Q Consensus       110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~---~~~~----------~~~-~~~~-----~~~~~l  168 (323)
                      +...+....+.+|++++|.|.+.+.+   .+.+.|||.  +...   ....          ... .++.     .....|
T Consensus         5 v~~~p~~~~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            5 LEGRTKSVIRQTGSSAEITCDLAEGS---TGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ------CEEEETTCCEEEECCC--------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             cccCCceeEecCCCcEEEEEEEccCC---CcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            33355666788999999999998877   679999982  2111   0000          001 1111     234579


Q ss_pred             EEeeeecCCCeeEEEEEEcCCCCC-CCCceeeeeEEEec-----------------ceee-eeceeEEeeCCeEEEEEEE
Q psy15235        169 TIRKTTVDDAGQYSCRLIDPKSTN-TTPLAQADFDVIMK-----------------PTAK-LVETLTVIEGEKLRLECLV  229 (323)
Q Consensus       169 ~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~~l~v~~~-----------------p~~~-~~~~~~~~~g~~~~l~C~~  229 (323)
                      .|.+++.+|+|.|.|.+ .+..+. ........|.|..+                 |.+. .+....+.+|++++|.|.+
T Consensus        82 ~I~~v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  160 (259)
T 3omz_A           82 ILRNLIENDSGVYYCAT-WDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY  160 (259)
T ss_dssp             EESSCCGGGCEEEEEEE-ECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred             EECCCCcccCEEEEEEE-eeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence            99999999999999999 555321 12233445666552                 2333 3445778999999999999


Q ss_pred             ecC-CCCcEEEEECCe--eee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        230 VGS-PPPTVEWRIGND--TYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       230 ~g~-p~~~~~W~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      .+. |.+.+.|++++.  .+.           ...+++.+.  .........|+|.+++.+|+|.|.|.+.+.
T Consensus       161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVN--FKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEEC--CBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEE--EcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            775 778999998431  111           011333333  111123567999999999999999999853

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.78  E-value=6.3e-18  Score=130.62  Aligned_cols=140  Identities=15%  Similarity=0.284  Sum_probs=95.5

Q ss_pred             EecCCcEEEEEEeccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccceeeeee-
Q psy15235         33 IMEGAPINISCILTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNAITGNYD-  111 (323)
Q Consensus        33 v~~G~~v~L~C~~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~~~~~~~-  111 (323)
                      +.+|++|+|.|.+ +.+.++|+|+|..+...          ....+.+.|......|+|.|+|.+.+.. +..+...+. 
T Consensus        15 ~~~G~~v~L~C~~-p~~~i~W~k~g~~l~~~----------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~-s~~~~v~v~~   82 (204)
T 1sy6_A           15 YQEDGSVLLTCDA-EAKNITWFKDGKMIGFL----------TEDKKKWNLGSNAKDPRGMYQCKGSQNK-SKPLQVYYRM   82 (204)
T ss_dssp             CCSSSEEEEEECS-CSSEEEEEETTEEEEEE----------ESSCCCEEEEEGGGCCEEEEEEESSSSC-CCCEEEEEEC
T ss_pred             ecCCCeEEEEEcC-CCCEEEEEECCEECCCC----------CCCCCeEEeCCCCcCCCEEEEEEecCCC-CeeEEEEEEE
Confidence            4689999999999 88999999999877653          1123344454445556999999975432 221211111 


Q ss_pred             -----------------------------------eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc
Q psy15235        112 -----------------------------------IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE  156 (323)
Q Consensus       112 -----------------------------------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~  156 (323)
                                                         ..+...+..+|++++|.|.  +.|   .+.+.|++++..+.... 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p---~p~i~W~k~~~~l~~~~-  156 (204)
T 1sy6_A           83 GSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYP---GSEILWQHNDKNIGGDE-  156 (204)
T ss_dssp             ------------------------------------CCCCEEEEETTEEEEECS--CCC---SSCEEEEETTEEESCCT-
T ss_pred             eccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCC---CCceEEEECCEECCCcc-
Confidence                                               1111222338999999998  555   67899999998875410 


Q ss_pred             ccCcEEeceeEEEEeee-ecCCCeeEEEEEEcCCCC
Q psy15235        157 LSGRLTQSKDSITIRKT-TVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       157 ~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~~~~~~  191 (323)
                      ...........|.|.++ +.+|+|.|+|.| .|..+
T Consensus       157 ~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A-~N~~g  191 (204)
T 1sy6_A          157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYP-RGSKP  191 (204)
T ss_dssp             TCTTEEEETTEEEETTCCHHHHCEEEEEEE-TTSCG
T ss_pred             CCceEecCCCEEEEeeCCccccCEEEEEEe-ccCCC
Confidence            01122234678999999 999999999999 78754

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.78  E-value=9.1e-18  Score=128.38  Aligned_cols=159  Identities=13%  Similarity=0.197  Sum_probs=110.4

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCc--eEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDY--QIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT  194 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  194 (323)
                      ..+..|++++|.|.+ +.+   .+  .|+|++.+..+.     +.........|.|.+++.+|+|.|.|.+ .+..  ..
T Consensus        17 v~v~~G~sv~L~C~a-~~p---~P~~~i~W~~~~~~l~-----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a-~n~~--~~   84 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACA---DRGASVQWRGLDTSLG-----AVQSDTGRSVLTVRNASLSAAGTRVCVG-SCGG--RT   84 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCS---STTCEEEEESSTTTTC-----CEEEESSEEEEEECSCCGGGCEEEEEEE-EETT--EE
T ss_pred             eEEeCCCCEEEEEEC-CCC---CCCcceEEeecccccC-----cEEecCCccEEEECccCcccCceEEEEE-EeCC--Cc
Confidence            468899999999999 766   55  999998654331     1122245678999999999999999999 6652  34


Q ss_pred             CceeeeeEEEecceee-eeceeEEeeCCeEEEEEEEecC-CC----CcEEEEECCeeeeccCC---eeeee--cC---CC
Q psy15235        195 PLAQADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGS-PP----PTVEWRIGNDTYFRSQG---RIKLS--EH---PE  260 (323)
Q Consensus       195 ~~~~~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~----~~~~W~~~~~~~~~~~~---~~~~~--~~---~~  260 (323)
                      ....+.|+|..+|... +.+ .....|+.+ |.|.+.|. |.    +++.|++|+..+.....   ....+  ..   ..
T Consensus        85 ~~~~~~ltV~~~P~~~~i~~-~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~  162 (210)
T 1gsm_A           85 FQHTVQLLVYAFPNQLTVSP-AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED  162 (210)
T ss_dssp             EEEEEEEEEEBCCSEEEEES-SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCC
T ss_pred             eEEEEEEEEEecCCCcEEcc-ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcc
Confidence            5667888888888543 222 366678888 99999875 63    47999999999853211   11000  00   00


Q ss_pred             -CCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        261 -KGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       261 -~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                       .....++|.+.....+|.+.|+|.|.+..
T Consensus       163 ~~~~vts~~~~~~~~~D~~~~~tC~a~~~L  192 (210)
T 1gsm_A          163 VLFRVTERWRLPPLGTPVPPALYCQATMRL  192 (210)
T ss_dssp             CCEEEEEEEECCCCCSSCCSEEEEEEEEEE
T ss_pred             eEEEEEEEEeecCCcccCCceEEEEEEeeC
Confidence             11234556666777777789999999987

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.78  E-value=5.8e-19  Score=144.35  Aligned_cols=174  Identities=15%  Similarity=0.157  Sum_probs=123.0

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .|.+...+....+.+|++++|.|.+.+.       +.|++++.....     .........|.|.+++.+|+|.|+|.+ 
T Consensus         4 ~P~i~~~~~~~~v~~G~~v~L~C~~~~~-------v~W~~~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~~-   70 (292)
T 4dkd_C            4 IPVIEPSVPELVVKPGATVTLRCVGNGS-------VEWDGPPSPHWT-----LYSDGSSSILSTNNATFQNTGTYRCTE-   70 (292)
T ss_dssp             CCEEESCCSSCEECTTCCEEEEEECSSC-------CCBCCCCCSSCE-----ECCBTTEEEEEESSCCGGGCSCEEECC-
T ss_pred             CceecCCCCeEEEcCCCcEEEEEcCCCc-------eEEccCCCCceE-----EeccCceEEEEEcccccccCEEEEEEE-
Confidence            3555556666678899999999998662       789875532111     000134568999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEecce--eeeeceeEEeeCCeEEEEEEEecCCC--CcEEEEECCeeeeccCCeeeeecCCCCC
Q psy15235        187 DPKSTNTTPLAQADFDVIMKPT--AKLVETLTVIEGEKLRLECLVVGSPP--PTVEWRIGNDTYFRSQGRIKLSEHPEKG  262 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~~p~--~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~  262 (323)
                      .+..+  .....+.|.|..+|.  ...+....+.+|+.+.|.|.+.+ |.  +.+.|++++........++...      
T Consensus        71 ~n~~~--~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~------  141 (292)
T 4dkd_C           71 PGDPL--GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFS------  141 (292)
T ss_dssp             CC------CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECC------
T ss_pred             ccCCC--CcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCccccc------
Confidence            66633  346777788877654  33455677889999999999987 44  7899999854433333444433      


Q ss_pred             CcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       263 ~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                       ....|.|.++..+|+|.|+|.|.|..|.   .....+.|.|..
T Consensus       142 -~~~~L~i~~~~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~  181 (292)
T 4dkd_C          142 -PWHGFTIHRAKFIQSQDYQCSALMGGRK---VMSISIRLKVQK  181 (292)
T ss_dssp             -SSSCCEETTCCGGGCSEEEEEECSTTSC---EECCCEEEEEEC
T ss_pred             -CCceEEECCCCHHHCeEEEEEEEeCCCc---eeEEEEEEEEeC
Confidence             2455999999999999999999988754   233466777765

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.77  E-value=5.9e-18  Score=134.03  Aligned_cols=168  Identities=12%  Similarity=0.170  Sum_probs=104.1

Q ss_pred             cCCceEEE-eeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceeec-------cCcceEEEeeeeCCeEEEEEeec
Q psy15235         20 SADGKITY-FGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQSS-------VDSGFAATANLTEDNFKYSIHEA   87 (323)
Q Consensus        20 ~~~~~i~~-~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~   87 (323)
                      .....+.. +..+.+.+|++++|.|.+.  +.+.+.|+|++  .......       ......+......+...|.|.++
T Consensus        22 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  101 (237)
T 3sob_L           22 YADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSL  101 (237)
T ss_dssp             --CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             CccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCC
Confidence            33444544 6678899999999999954  46799999943  2211100       00011122224456778888887


Q ss_pred             cc--CcceEEEeeccCCc---c--ceeeeeee-CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeeccc
Q psy15235         88 IL--ESGYVQSSLFIPRM---N--AITGNYDI-EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE  153 (323)
Q Consensus        88 ~~--~G~Y~C~~~~~~~~---~--~~~~~~~~-~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~  153 (323)
                      +.  +|.|+|.+.+..+.   .  .+.+.... .|.+..      ...|+.++|.|.+.+.+|. .+.|.|+++|..+..
T Consensus       102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~-~~~v~W~k~g~~~~~  180 (237)
T 3sob_L          102 QPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPR-EAKVQWKVDNALQSG  180 (237)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSS-CCEEEEEETTEECCS
T ss_pred             ChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCC-ceEEEEEECCCCCCC
Confidence            64  99999999775532   1  12111111 233322      2247889999999885532 379999999988764


Q ss_pred             cc--------cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        154 AT--------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       154 ~~--------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ..        ..++.+ .....|.|.....+|+|.|+|.| .|..
T Consensus       181 ~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~Y~C~a-~n~~  223 (237)
T 3sob_L          181 NSQESVTEQDSKDSTY-SLSSTLTLSKADYEKHKVYACEV-THQG  223 (237)
T ss_dssp             SEEEEECCCCTTTCCE-EEEEEEEEEHHHHTTCCEEEEEE-ECTT
T ss_pred             ceeecccccccCCCcE-EEEEEEEEcHHHccCCCcEEEEE-eeCC
Confidence            11        001111 22456888899899999999999 7763

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.77  E-value=1.7e-18  Score=133.13  Aligned_cols=154  Identities=13%  Similarity=0.077  Sum_probs=91.4

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeec
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLF   99 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~   99 (323)
                      +.+.......+.+|++|+|.|.+.+ ...+.|+|+|..+.....      ..........|.|.+++  |+|.|+|.+.+
T Consensus         6 P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            6 ATLWAEPGSVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQ------NPLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             CEEEEESCSEEETTCCEEEEEECCTTCCEEEEEETTCSSCSEEE------CCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEeCCCCcccCCCeEEEEEeCCCCCcEEEEEECCCCCCcccc------cccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            3444333357899999999999543 348999999987654200      00112334556666654  49999999987


Q ss_pred             cCCcc----ceeee---------eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---e
Q psy15235        100 IPRMN----AITGN---------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---Q  163 (323)
Q Consensus       100 ~~~~~----~~~~~---------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~  163 (323)
                      ..+..    .+...         +...+ ...+.+|+.++|.|.+.+.+    +.+.|+|+|..+..... .....   .
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p----~~~~W~k~g~~~~~~~~-~~~~~~~~~  153 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF----DRFILTEEGDHKLSWTL-DSQLTPSGQ  153 (196)
T ss_dssp             TTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC----SEEEEEEC---CCEEEE-ECEECTTSC
T ss_pred             CCCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC----CEEEEEccCCccccccc-ccccccCCC
Confidence            54321    11111         11111 12467899999999998876    48999999987643000 00111   2


Q ss_pred             ceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        164 SKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       164 ~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ....|.|.+++.+|+|.|+|.+ .+.
T Consensus       154 ~~~~L~I~~v~~~D~G~Y~C~a-~n~  178 (196)
T 2d3v_A          154 FQALFPVGPVTPSHRWMLRCYG-SRR  178 (196)
T ss_dssp             EEEEEECCCCBTTBCEEEEEEE-EET
T ss_pred             ceeEEEeeecCcccCeeEEEEE-Ecc
Confidence            3478999999999999999999 554

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.77  E-value=1.2e-17  Score=132.70  Aligned_cols=173  Identities=17%  Similarity=0.274  Sum_probs=110.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--e------------eccccccccCcEE-----eceeEEEEeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--K------------SITEATELSGRLT-----QSKDSITIRKT  173 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~------------~~~~~~~~~~~~~-----~~~~~l~i~~~  173 (323)
                      .|....+.+|++++|.|.+.+ +   .+.+.|||..  .            ... .....+|+.     .....|.|.++
T Consensus         8 ~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A            8 SPRHIIKEKGGRSVLTCIPIS-G---HSNVVWYQQTLGKELKFLIQHYEKVERD-KGFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-T---CCEEEEEEECTTSCCEEEEEEETTEEEE-ECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             CcceeeecCCCcEEEEEEeCC-C---CceEEEEEECCCCCCEEEEEEcCCcccc-CcccCCeEEEEeCCCCEEEEEECcC
Confidence            455667889999999999876 4   5799999821  1            111 111224544     23568999999


Q ss_pred             ecCCCeeEEEEEEcCCC-CCCCCceeeeeEEE------ecceeee--eceeEEeeCCeEEEEEEEec-CCCC-cEEEEEC
Q psy15235        174 TVDDAGQYSCRLIDPKS-TNTTPLAQADFDVI------MKPTAKL--VETLTVIEGEKLRLECLVVG-SPPP-TVEWRIG  242 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~-~~~~~~~~~~l~v~------~~p~~~~--~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~  242 (323)
                      +.+|+|.|.|.+ .+.. ..........+.|.      .+|.+..  +....+..|+.++|.|.+.| .|.+ .+.|+++
T Consensus        83 ~~~D~G~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~  161 (240)
T 3q5y_A           83 ELEDSAMYFCAS-SLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  161 (240)
T ss_dssp             CGGGCEEEEEEE-ESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             ChhHCEEEEEEE-ccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence            999999999999 5221 11122333456665      2344432  22223456899999999987 5666 7999999


Q ss_pred             CeeeeccCCeee--eecCCCCCCcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235        243 NDTYFRSQGRIK--LSEHPEKGTANSVLQIDEATMAD-RGNYYCHGNNVATR  291 (323)
Q Consensus       243 ~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~  291 (323)
                      |..+........  ...........+.|.|.....+| .|.|+|.|.|....
T Consensus       162 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          162 GKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             TEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            988753211110  00000000123569999999999 67999999998754

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.77  E-value=9.3e-18  Score=135.52  Aligned_cols=172  Identities=17%  Similarity=0.304  Sum_probs=109.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCC--CCceEEEEECC--eecc---c-----cccccCcEE----eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKGN--KSIT---E-----ATELSGRLT----QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~~--~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|.+.+.++.  ..+.+.|+++.  ....   .     ......|+.    .....|.|.+++.+
T Consensus        21 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  100 (268)
T 1x9q_A           21 TPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAE  100 (268)
T ss_dssp             ECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChh
Confidence            4555567899999999999876520  03789999853  2111   0     001234554    23568999999999


Q ss_pred             CCeeEEEEEEcCCCCCCCCceeeeeEEEecc------------------------eeeeeceeEEeeCCeEEEEEEEecC
Q psy15235        177 DAGQYSCRLIDPKSTNTTPLAQADFDVIMKP------------------------TAKLVETLTVIEGEKLRLECLVVGS  232 (323)
Q Consensus       177 d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p------------------------~~~~~~~~~~~~g~~~~l~C~~~g~  232 (323)
                      |+|.|.|.+ .+.... .......|.|...+                        .+..+....+.+|++++|.|.+.+.
T Consensus       101 DsG~Y~C~~-~~~~~~-~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~  178 (268)
T 1x9q_A          101 DLGVYFCSQ-STHVPW-TFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGF  178 (268)
T ss_dssp             GCEEEEEEE-CSSSSC-EECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESS
T ss_pred             HCEEEEEEE-ecCCCc-eEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCc
Confidence            999999999 665321 11123345554321                        1223445678899999999999887


Q ss_pred             CC--CcEEEEECC--eeee------------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        233 PP--PTVEWRIGN--DTYF------------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       233 p~--~~~~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      |+  +.+.|+++.  ..+.                  ....++.+...  .......|+|.+++.+|+|.|+|.|.|.
T Consensus       179 ~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          179 TFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRD--DSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             CGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEE--GGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEe--CCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            64  789999852  2211                  01233333310  0112468999999999999999999985

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.77  E-value=5.3e-18  Score=137.78  Aligned_cols=170  Identities=15%  Similarity=0.220  Sum_probs=111.2

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc-------------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE-------------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~-------------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      |....+.+|++++|.|.+.+.... ...+.|||..  .....             ......|+.      .....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFS-SFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS   85 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCT-TSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred             CCCEEECCCCcEEEEEEeeccCCC-CeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            555678899999999999874211 5789999732  11110             011223443      1235899999


Q ss_pred             eecCCCeeEEEEEEcCCC-------CCCCCceeeeeEEEe---------------cceeeeeceeEEeeCCeEEEEEEEe
Q psy15235        173 TTVDDAGQYSCRLIDPKS-------TNTTPLAQADFDVIM---------------KPTAKLVETLTVIEGEKLRLECLVV  230 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~-------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~g~~~~l~C~~~  230 (323)
                      ++.+|+|.|.|.+ .+..       ..........|.|..               ++.+..++...+.+|++++|.|.+.
T Consensus        86 v~~~DsG~Y~C~~-~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~~~  164 (280)
T 3fku_X           86 LRSEDTAVYYCAR-SPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGN  164 (280)
T ss_dssp             CCSTTCEECCEEE-CSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEECC
T ss_pred             CChhhCEEEEEEE-ecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEEec
Confidence            9999999999999 5540       111122344566655               4455544457789999999999998


Q ss_pred             c-CC-CCcEEEEEC--Ceeeec-----------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        231 G-SP-PPTVEWRIG--NDTYFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       231 g-~p-~~~~~W~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      + .+ .+.+.|++.  +..+..           ...++....    ......|+|.+++.+|+|.|.|.+.|..
T Consensus       165 ~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          165 SNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASR----SGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             CCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEE----ETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEc----cCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            7 44 378999983  222110           112333321    0134679999999999999999999876

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.77  E-value=6.6e-18  Score=132.75  Aligned_cols=172  Identities=19%  Similarity=0.257  Sum_probs=111.0

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c----------cccccCcEE-e-----ceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E----------ATELSGRLT-Q-----SKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~----------~~~~~~~~~-~-----~~~~l~i~~  172 (323)
                      +....+.+|++++|.|.+.+.+.. .+.+.|||+.  ....   .          ...+.+|+. .     ....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRIS-AHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK   85 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeEecCCCCEEEEEEecCcccC-CceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence            334568899999999999875421 3689999853  2111   0          011245655 1     256899999


Q ss_pred             eecCCCeeEEEEEEcCCCCC----C--CCceeeeeEEEe----cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEE
Q psy15235        173 TTVDDAGQYSCRLIDPKSTN----T--TPLAQADFDVIM----KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEW  239 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~----~--~~~~~~~l~v~~----~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W  239 (323)
                      ++.+|+|.|.|.+ .+..+.    .  .......|.|..    +|.+.. .+...+..|+.++|.|.+.|. |.+ .+.|
T Consensus        86 v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  164 (225)
T 1op3_H           86 MRVEDTAIYYCAR-KGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  164 (225)
T ss_dssp             CCGGGCEEEEEEE-ECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEEC
T ss_pred             CChhhCEEEEEEE-ecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEE
Confidence            9999999999999 665320    0  111234666664    344432 222235679999999999876 776 8999


Q ss_pred             EECCeeeecc-CCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        240 RIGNDTYFRS-QGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       240 ~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ++++..+... ..... .  .++ ....+.|.|.++..+| |.|+|.|.|..+.
T Consensus       165 ~~~~~~~~~~~~~~~~-~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          165 NSGALTSGVHTFPAVL-Q--SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (225)
T ss_dssp             CTTSCCTTCEECCCEE-C--TTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred             ecCCCcCCeEecCcee-C--CCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence            9988653110 01010 0  111 1134679999998888 9999999998743

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.77  E-value=2.7e-17  Score=127.49  Aligned_cols=167  Identities=16%  Similarity=0.186  Sum_probs=107.5

Q ss_pred             EeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceee-----cc----------CcceEEEeeeeCCeEEEEEeec--
Q psy15235         27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQS-----SV----------DSGFAATANLTEDNFKYSIHEA--   87 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~-----~~----------~~~~~~~~~~~~~~~~l~i~~~--   87 (323)
                      .+.+..+.+|++++|.|..  .+.+.+.|++++......     ..          ..++.. .. .++  .|.|.++  
T Consensus         5 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~-~~-~~~--~L~i~~v~~   80 (208)
T 3r4d_A            5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREI-IY-SNG--SLLFQMITM   80 (208)
T ss_dssp             EEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEE-EC-TTS--CEEECSCCG
T ss_pred             cCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeE-Ee-cCC--eEEEccccc
Confidence            3456789999999999994  355799999975322111     00          011110 11 123  3555555  


Q ss_pred             ccCcceEEEeeccCC-ccceeeeeee--C---CceeE----EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc
Q psy15235         88 ILESGYVQSSLFIPR-MNAITGNYDI--E---PKYKV----FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL  157 (323)
Q Consensus        88 ~~~G~Y~C~~~~~~~-~~~~~~~~~~--~---~~~~~----~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~  157 (323)
                      .|+|.|+|.+.+... .......+.+  .   +....    +..|+.+.|.|.+.+.+    +.+.|++++..+..    
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~p----p~i~W~~~g~~l~~----  152 (208)
T 3r4d_A           81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG----ANIQWLFNSQSLQL----  152 (208)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTT----CEEEEEETTEECCC----
T ss_pred             cCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCC----CceEEEECCEeCCC----
Confidence            459999999988742 2222222222  1   11111    66799999999998854    58999999998876    


Q ss_pred             cCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        158 SGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       158 ~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      ..++.  .....|.|.++..+|+|.|+|.+ .|..+. ..+..++|.|..+|
T Consensus       153 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~N~~g~-~~s~~~~l~v~~~~  202 (208)
T 3r4d_A          153 TERMTLSQNNSILRIDPIKREDAGEYQCEI-SNPVSV-RRSNSIKLDIIFDP  202 (208)
T ss_dssp             CSSEEEETTTTEEEESSCCGGGCEEEEEEE-ECTTCC-EECCCEEECCC---
T ss_pred             CCCeEEcCCCCEEEEeccCHHhCeEEEEEE-ecCCCc-ccCCceeeeEEeCC
Confidence            44544  34478999999999999999999 777544 34556666666554

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.77  E-value=6.8e-18  Score=141.38  Aligned_cols=172  Identities=19%  Similarity=0.243  Sum_probs=113.0

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      +....+.+|++++|.|.+.+.++. .+.+.|+|+  +..+..             ......|+.      .....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFT-DHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTT-SSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeEEeCCCcEEEEEEcCCcccc-ccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            444568899999999999886311 578999996  332210             011245554      1346899999


Q ss_pred             eecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCee
Q psy15235        173 TTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDT  245 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~  245 (323)
                      ++.+|+|.|.|.+ .+..  ........|.|..    +|.+. .++...+.+|+.++|.|.+.|. |. +.+.|++++..
T Consensus        86 v~~~D~G~Y~C~~-~n~~--~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  162 (344)
T 1za6_B           86 LRSEDTAVYFCTR-SLNM--AYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  162 (344)
T ss_dssp             CCGGGCEEEEEEE-TTTT--CEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred             CCcccCEEEEEEE-ecCc--ceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence            9999999999999 7642  1223345666662    34444 2333445789999999999886 65 69999999875


Q ss_pred             eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +.......... ........+.|+|.++..+| |.|+|.|.|..|.
T Consensus       163 ~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~  206 (344)
T 1za6_B          163 SGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  206 (344)
T ss_dssp             TTEEECCCEEC-TTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGT
T ss_pred             CceeECCCeEC-CCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence            32110000000 00001124589999999888 9999999999864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.76  E-value=3.3e-18  Score=143.47  Aligned_cols=169  Identities=9%  Similarity=0.117  Sum_probs=114.4

Q ss_pred             EEeeceEEecCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCc-ceEEEeecc
Q psy15235         26 TYFGDTEIMEGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LES-GYVQSSLFI  100 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G-~Y~C~~~~~  100 (323)
                      ..+....+.+|++++|.|.+  .+.+.+.|++++..+......       ........|.|.+++  |+| .|+|.+.+.
T Consensus       163 ~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~  235 (347)
T 2ifg_A          163 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-------SGGLPSLGLTLANVTSDLNRKNVTCWAEND  235 (347)
T ss_dssp             EECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-------CCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             ccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc-------ceecccceEEEeeCChHHCCCeEEEEEEcC
Confidence            34566789999999999994  467899999988765543111       012334456666554  499 999999987


Q ss_pred             CCccceeeeeee--CCc--eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-------eceeEEE
Q psy15235        101 PRMNAITGNYDI--EPK--YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-------QSKDSIT  169 (323)
Q Consensus       101 ~~~~~~~~~~~~--~~~--~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-------~~~~~l~  169 (323)
                      .+.......+.+  .|.  ......|+.++|.|.+.|.|   .+.|.|+++|..+........++.       .....|.
T Consensus       236 ~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P---~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~  312 (347)
T 2ifg_A          236 VGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQP---APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR  312 (347)
T ss_dssp             TEECCEEECCCCBEEEEEEECCCEESSSEEEEEEEEEES---CCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEE
T ss_pred             CCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEeeecC---CCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEE
Confidence            766544333333  222  11245699999999999987   789999999998875111111110       1356799


Q ss_pred             EeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       170 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      |.+++.+|+|.|+|.| .|..+  .....+.+.|..+|
T Consensus       313 I~~v~~~d~G~Y~C~a-~N~~G--~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          313 LNQPTHVNNGNYTLLA-ANPFG--QASASIMAAFMDNP  347 (347)
T ss_dssp             ESSCCGGGCEEEEEEE-EETTE--EEEEEEEECSCCCC
T ss_pred             ECCCCcccCceEEEEE-ecCCC--ceeeEEEEEecCCC
Confidence            9999999999999999 77743  34555555554443

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.76  E-value=2.4e-18  Score=133.45  Aligned_cols=170  Identities=11%  Similarity=0.179  Sum_probs=108.9

Q ss_pred             eeceEEecCCcEEEEEEec--cCceEEEEEcCccceeeccCcceE-----EEeeeeCCeEEEEEeec--ccCcceEEEee
Q psy15235         28 FGDTEIMEGAPINISCILT--IFEQVKWQLNGRNINQSSVDSGFA-----ATANLTEDNFKYSIHEA--ILESGYVQSSL   98 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~   98 (323)
                      +..+.+.+|+++.|.|.+.  +.+.+.|++++..+.......+..     .+.....  ..|.|.++  .|+|.|+|.+.
T Consensus        11 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~L~i~~~~~~d~G~Y~C~~~   88 (209)
T 1nbq_A           11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--TGITFKSVTREDTGTYTCMVS   88 (209)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET--TEEECSCCCTTSCSEEEEEEE
T ss_pred             CCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec--cEEEEeeCCHHHCcEEEEEEe
Confidence            4567799999999999943  568999999887643211000000     0011112  34555555  45999999998


Q ss_pred             ccCCcc--ceeeeeee--------CCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeecccccccc-----CcEE
Q psy15235         99 FIPRMN--AITGNYDI--------EPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELS-----GRLT  162 (323)
Q Consensus        99 ~~~~~~--~~~~~~~~--------~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~-----~~~~  162 (323)
                      +..+..  .....+.+        .+....+..|+.++|.|.+ .+.|   .+.+.|++++..+.......     .++.
T Consensus        89 ~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  165 (209)
T 1nbq_A           89 EEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP---PSEYTWFKDGIVMPTNPKSTRAFSNSSYV  165 (209)
T ss_dssp             ETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBS---CCEEEEEETTCCCCSCSSSSSSCTTCCCC
T ss_pred             cCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCC---CceeEEEECCeeCCCccccceeeeccceE
Confidence            864421  11111111        1222347789999999997 6766   67999999998876521110     1121


Q ss_pred             --eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        163 --QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       163 --~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                        .....|.|.++..+|+|.|+|.| .|..+....+..+.|.|
T Consensus       166 ~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          166 LNPTTGELVFDPLSASDTGEYSCEA-RNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             CCTTTCCEEESSCCGGGCCCEEEEE-ECSSSCCEECCCBCCEE
T ss_pred             EcCCcceEEEEeccccCCeEEEEEE-eCCcCcccccccEEEEE
Confidence              35678999999999999999999 78865543455555554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.76  E-value=8.9e-18  Score=130.81  Aligned_cols=159  Identities=14%  Similarity=0.193  Sum_probs=101.8

Q ss_pred             EeeceEEecCCcEEEEEEec--cCceEEEEEcC--cccee---------eccCcceEEEeeeeCCeEEEEEeeccc--Cc
Q psy15235         27 YFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQ---------SSVDSGFAATANLTEDNFKYSIHEAIL--ES   91 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G   91 (323)
                      .+..+.+.+|++++|.|.+.  +.+.+.|+|++  ..+..         .....+  +..........|.|.+++.  +|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~D~G   84 (213)
T 3d9a_L            7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSR--FSGSGSGTDFTLSINSVETEDFG   84 (213)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTT--EEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEccccccccccc--EEEEcCCCEEEEEECCCChhhCE
Confidence            36778899999999999954  45789999854  22210         001112  2223345667788887754  99


Q ss_pred             ceEEEeeccCCccce-eeeeee-----CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeecccc-cc--
Q psy15235         92 GYVQSSLFIPRMNAI-TGNYDI-----EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA-TE--  156 (323)
Q Consensus        92 ~Y~C~~~~~~~~~~~-~~~~~~-----~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~-~~--  156 (323)
                      .|+|.+.+..+.... ...+.+     .|....      ...|+.++|.|.+.+.+|. ...+.|+++|..+... ..  
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~-~~~v~W~k~g~~~~~~~~~~~  163 (213)
T 3d9a_L           85 MYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQNGVLNSW  163 (213)
T ss_dssp             EEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEEEE
T ss_pred             EEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCC-ceEEEEEcCCCcCcceeeecC
Confidence            999999876543210 011111     222222      2258899999999884431 2489999999987652 00  


Q ss_pred             -----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        157 -----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       157 -----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                           .+..+ .....|.|.++..+|+|.|+|.| .|..
T Consensus       164 ~~~~~~~~~~-~~~s~L~i~~~~~~d~G~Y~C~a-~n~~  200 (213)
T 3d9a_L          164 TDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THKT  200 (213)
T ss_dssp             CCCCTTTCCE-EEEEEEEEEHHHHHHCCEEEEEE-ECTT
T ss_pred             CCccCCCCCE-EEEEEEEEeccccCCCCEEEEEE-EEcc
Confidence                 00111 12458999999999999999999 7763

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.76  E-value=3.7e-18  Score=134.44  Aligned_cols=173  Identities=18%  Similarity=0.246  Sum_probs=108.7

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCC--ceEEEEECC--eecc---c---------cccccCcEEe------ceeEEEEe
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDD--YQIVWYKGN--KSIT---E---------ATELSGRLTQ------SKDSITIR  171 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~--~~i~W~~~~--~~~~---~---------~~~~~~~~~~------~~~~l~i~  171 (323)
                      |....+.+|++++|.|.+.+.+.. .  +.+.|+|+.  ....   .         ...+.+|+..      ....|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIR-TSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT   85 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHH-HHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred             CCceeecCCCeEEEEEEEeCcccC-CCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence            344568899999999999886510 1  689999842  2211   0         0112455541      24789999


Q ss_pred             eeecCCCeeEEEEEEcCCCCC-----C--CCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CCC-cE
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTN-----T--TPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PPP-TV  237 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~-----~--~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~  237 (323)
                      +++.+|+|.|.|.+ .+..+.     .  .......|.|..    +|.+. .++...+.+|+.++|.|.+.|. |.+ .+
T Consensus        86 ~v~~~D~G~Y~C~~-~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v  164 (228)
T 3bae_H           86 SVDTADTATYYCAR-RGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTL  164 (228)
T ss_dssp             SCCGGGCEEEEEEE-EEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEE
T ss_pred             CCCcccCEEEEEEE-ecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEE
Confidence            99999999999999 554210     0  111235666653    45444 2323446789999999999876 777 89


Q ss_pred             EEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        238 EWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       238 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .|++++..+..........  .......+.|+|.++..+| |.|+|.|.|..|.
T Consensus       165 ~W~~~~~~~~~~~~~~~~~--~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~  215 (228)
T 3bae_H          165 TWNSGSLSSGVHTFPAVLQ--SDLYTLSSSVTVTSSTWPS-ESITCNVAHPASS  215 (228)
T ss_dssp             EEGGGTCCTTEEEEEEEEE--TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EEeeCCcccCceEcCceeC--CCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCC
Confidence            9999886531110000000  1011135679999988866 9999999999965

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.76  E-value=1.4e-18  Score=137.29  Aligned_cols=195  Identities=14%  Similarity=0.172  Sum_probs=106.7

Q ss_pred             cceEEEeeccCCc---c--ceeeeeee-CCceeE-EecCCcEEEEEEeecCC--CCCCceEEEEECCeecccccc-----
Q psy15235         91 SGYVQSSLFIPRM---N--AITGNYDI-EPKYKV-FEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKSITEATE-----  156 (323)
Q Consensus        91 G~Y~C~~~~~~~~---~--~~~~~~~~-~~~~~~-~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~~~~~~~-----  156 (323)
                      |.|.|.+++..+.   .  ...|.+.+ .|.... +..|+.++|.|.+.+..  |. ...|+|+++|..+.....     
T Consensus         1 ~~~~~~~~~~~~~c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~-~i~v~W~k~g~~l~~~~~~~~~~   79 (240)
T 4acp_A            1 GTKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDP-EVKFNWYVDGVEVHNAKTKPREE   79 (240)
T ss_dssp             ----------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--C-CCEEEEEETTEEECCCEECCCEE
T ss_pred             CceeeeeeecCCCCCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCC-ccEEEEEECCcccCCceeccceE
Confidence            6788988875442   1  12233333 333332 44599999999999976  42 458999999988754110     


Q ss_pred             -ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEec-
Q psy15235        157 -LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVG-  231 (323)
Q Consensus       157 -~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g-  231 (323)
                       .++.+ .....|.|.....+|.|.|+|.+ .+..+.......+.+  .+..+|.+.+.. ......|+.+.|.|.+.| 
T Consensus        80 ~~~g~~-~~~s~L~i~~~~~~d~~~YtC~v-~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf  157 (240)
T 4acp_A           80 QYNSTY-RVVSVLTVLHQDWLNGKEYKCKV-SNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF  157 (240)
T ss_dssp             C---CE-EEEEEEECCHHHHHHTCCEEEEE-ECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE
T ss_pred             CCCCeE-EEEEEEEEechhccCCCEEEEEE-EcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEE
Confidence             01222 22346777777777899999999 676432222222221  233456555322 222234889999999988 


Q ss_pred             CCCC-cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        232 SPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       232 ~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      +|.+ .+.|+++|..+.... ........++. ...+.|.|.....+|.|.|+|.|.|..
T Consensus       158 ~P~~i~v~W~k~g~~~~~~~-~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          158 YPSDIAVEWESNGQPENNYK-ATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             BSSCCEEEEEETTEECSSEE-ECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             eCCCcEEEEEECCEECCCcC-ccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence            4654 799999998764211 11010001111 234678888777778999999999987

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.76  E-value=1.2e-16  Score=123.16  Aligned_cols=153  Identities=12%  Similarity=0.119  Sum_probs=97.0

Q ss_pred             CceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEee
Q psy15235         22 DGKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSL   98 (323)
Q Consensus        22 ~~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~   98 (323)
                      .+.+.......+.+|++|+|.|.+. +.+.+.|+|+|..+.......    ..........|.|.+++  |+|.|+|.+.
T Consensus         8 ~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~----~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   83 (201)
T 1nkr_A            8 KPSLLAHPGPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIG----EHHDGVSKANFSISRMTQDLAGTYRCYGS   83 (201)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEEESSSCEEEEEEC----EEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEEEcCCccCCCCcEEEEEeccCCCCEEEEEECCCcCCcceeee----ecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence            4455544446789999999999954 557999999998765431000    00111123456666554  5999999997


Q ss_pred             ccCC-------ccceee---------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE
Q psy15235         99 FIPR-------MNAITG---------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT  162 (323)
Q Consensus        99 ~~~~-------~~~~~~---------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~  162 (323)
                      +...       +..+..         .+...+. ..+.+|+.++|.|.+.+ +   .+.+.|+|+|..+..... .....
T Consensus        84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~---~~~~~w~k~g~~~~~~~~-~~~~~  157 (201)
T 1nkr_A           84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-S---YDMYHLSREGEAHERRLP-AGPKV  157 (201)
T ss_dssp             BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-C---CSEEEEEETTCSSCEEEE-CEEEE
T ss_pred             cCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-C---CceEEEEECCcccCcccc-ccccc
Confidence            5321       111111         1222222 24678999999999886 3   468999999987654100 00111


Q ss_pred             --eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        163 --QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       163 --~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                        .....|.|.+++  |+|.|+|.+.
T Consensus       158 ~~~~~~~L~i~~v~--d~G~Y~C~a~  181 (201)
T 1nkr_A          158 NGTFQADFPLGPAT--HGGTYRCFGS  181 (201)
T ss_dssp             TTEEEEEEEEEECC--SCEEEEEEEE
T ss_pred             CCceEEEEEeCCcC--CCeeEEEEEE
Confidence              126789999998  9999999994

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.76  E-value=1.5e-17  Score=135.96  Aligned_cols=170  Identities=16%  Similarity=0.234  Sum_probs=111.2

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c----------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E----------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~----------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      |....+.+|++++|.|.+.+.+.. .+.+.|+|+.  ....   .          .....+|+.      .....|.|.+
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFT-SYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             CCcEEecCCCCEEEEEeccCCccc-ccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            345668899999999999875421 3689999953  2110   0          011234543      1246899999


Q ss_pred             eecCCCeeEEEEEEcCCC-C--CCCCceeeeeEEEe----------------cceee-eeceeEEeeCCeEEEEEEEecC
Q psy15235        173 TTVDDAGQYSCRLIDPKS-T--NTTPLAQADFDVIM----------------KPTAK-LVETLTVIEGEKLRLECLVVGS  232 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~-~--~~~~~~~~~l~v~~----------------~p~~~-~~~~~~~~~g~~~~l~C~~~g~  232 (323)
                      ++.+|+|.|.|.+ .+.. +  .........|.|..                ++.+. .+....+.+|++++|.|.+.+.
T Consensus       108 v~~~DsG~Y~C~~-~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  186 (291)
T 2gki_A          108 LTSEDSAVYYCAR-GAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQS  186 (291)
T ss_dssp             CCGGGCEEEEEEE-ECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSC
T ss_pred             CCHHHCEEEEEEE-eccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCc
Confidence            9999999999999 5542 1  00111233566655                22333 2445678999999999999888


Q ss_pred             CCC------cEEEEECC--eee---ecc--------CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        233 PPP------TVEWRIGN--DTY---FRS--------QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       233 p~~------~~~W~~~~--~~~---~~~--------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      |.+      .+.|+++.  ..+   ...        ..++....    .....+|+|.+++.+|+|.|+|.|.|..
T Consensus       187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG----SGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe----cCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            765      89999963  211   100        23333321    0124689999999999999999999954

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.76  E-value=1e-16  Score=127.78  Aligned_cols=164  Identities=15%  Similarity=0.276  Sum_probs=106.5

Q ss_pred             CceEEEeeceEEecCCcEEEEEEec--c--CceEEEEEcC--cccee--------------eccCcceEEEeeeeCCeEE
Q psy15235         22 DGKITYFGDTEIMEGAPINISCILT--I--FEQVKWQLNG--RNINQ--------------SSVDSGFAATANLTEDNFK   81 (323)
Q Consensus        22 ~~~i~~~~~~~v~~G~~v~L~C~~~--~--~~~v~W~~~g--~~~~~--------------~~~~~~~~~~~~~~~~~~~   81 (323)
                      +..+..+.++.+.+|++|+|.|.+.  +  .+.+.|+|+.  ..+..              .....+..+..+...+...
T Consensus         3 ~~~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   82 (247)
T 2ghw_B            3 EVQLVQSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY   82 (247)
T ss_dssp             CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEE
T ss_pred             eeEEEecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEE
Confidence            4567778888999999999999954  3  4679999943  22110              0011222222222355677


Q ss_pred             EEEeeccc--CcceEEEeeccCCcc------ceeee-------------------eeeCCceeEEecCCcEEEEEEeecC
Q psy15235         82 YSIHEAIL--ESGYVQSSLFIPRMN------AITGN-------------------YDIEPKYKVFEYRVPFTLKCNVTSP  134 (323)
Q Consensus        82 l~i~~~~~--~G~Y~C~~~~~~~~~------~~~~~-------------------~~~~~~~~~~~~g~~v~l~C~~~~~  134 (323)
                      |.|.+++.  +|.|+|.+.+.....      .+.+.                   +...+....+.+|++++|.|.+.+.
T Consensus        83 L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~  162 (247)
T 2ghw_B           83 LQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQS  162 (247)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSC
T ss_pred             EEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCC
Confidence            88887764  999999998762110      11111                   1112333447789999999999998


Q ss_pred             CCCCCceEEEEE--CCeeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        135 PPGDDYQIVWYK--GNKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       135 ~~~~~~~i~W~~--~~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +   .+.+.|+|  ++..+..        ......++.    .....|.|.+++.+|+|.|+|.+ .+.
T Consensus       163 ~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~~~  227 (247)
T 2ghw_B          163 V---RSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQ-RSN  227 (247)
T ss_dssp             C---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEE-CSS
T ss_pred             c---cceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEE-ccC
Confidence            8   57999999  5543311        001133443    34567999999999999999999 654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.76  E-value=7.7e-17  Score=125.22  Aligned_cols=162  Identities=12%  Similarity=0.215  Sum_probs=102.9

Q ss_pred             eEEEeeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceee---------ccCcceEEEeeeeCCeEEEEEeeccc-
Q psy15235         24 KITYFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQS---------SVDSGFAATANLTEDNFKYSIHEAIL-   89 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~-   89 (323)
                      .+..+.++.+.+|++|+|.|.+.  +.+.+.|+|++  ..+...         ....+  +......+...|.|.+++. 
T Consensus         3 ~v~qp~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~   80 (210)
T 1lk3_L            3 VLTQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPAR--FSGSGSGTDFTLTIDPVEAD   80 (210)
T ss_dssp             CEECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTT--EEEEEETTEEEEEESSCCGG
T ss_pred             cEECCCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCcccc--EEEEecCCEEEEEECCCCHH
Confidence            34457778899999999999954  45789999953  332110         01111  2222345667788887754 


Q ss_pred             -CcceEEEeeccCCccce-eeeeee-----CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeecccc-c
Q psy15235         90 -ESGYVQSSLFIPRMNAI-TGNYDI-----EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA-T  155 (323)
Q Consensus        90 -~G~Y~C~~~~~~~~~~~-~~~~~~-----~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~-~  155 (323)
                       +|.|+|.+.+..+.... ...+.+     .|.+.+      ...|+.++|.|.+.+.+|. ...|.|+++|..+... .
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~~~~~~~  159 (210)
T 1lk3_L           81 DTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPR-DISVKWKIDGTERRDGVL  159 (210)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS-CCEEEEEETTEECCTTEE
T ss_pred             HCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCC-ceEEEEEeCCccCCCCce
Confidence             99999999876543210 011111     222222      1258999999999875431 2489999999987652 0


Q ss_pred             cc-------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        156 EL-------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       156 ~~-------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ..       ++.+ .....|.|.++..+|+|.|+|.| .|..
T Consensus       160 ~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~G~Y~C~a-~n~~  199 (210)
T 1lk3_L          160 DSVTDQDSKDSTY-SMSSTLSLTKADYESHNLYTCEV-VHKT  199 (210)
T ss_dssp             EEECCCCTTTCCE-EEEEEEEEEHHHHHTCCEEEEEE-ECTT
T ss_pred             EccCCccCCCCCE-EEEEEEEEChHHhccCCcEEEEE-EecC
Confidence            00       0111 22347999999999999999999 6763

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.76  E-value=1.8e-17  Score=132.56  Aligned_cols=183  Identities=17%  Similarity=0.233  Sum_probs=112.8

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee--cc-----------ccccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS--IT-----------EATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~--~~-----------~~~~~~~~~~------~~~~~l~i~~  172 (323)
                      +....+.+|++++|.|.+.+.... ...+.|||..  ..  ..           ....+.+|+.      .....|+|.+
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAASGFTFS-SFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             CCCEEECCCCcEEEEEEeeCcccc-CceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            344567889999999999763211 4689999842  11  10           0012234554      2345699999


Q ss_pred             eecCCCeeEEEEEEcCCCC--CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEec-CCCC-cEEEEECC
Q psy15235        173 TTVDDAGQYSCRLIDPKST--NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVG-SPPP-TVEWRIGN  243 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~  243 (323)
                      ++.+|+|.|.|.+ .+...  .........|.|.    .+|.+. ......+..|+.+.|.|.+.| .|.+ .+.|++++
T Consensus        86 v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~  164 (253)
T 3liz_H           86 LKSEDTAMYYCTR-DPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS  164 (253)
T ss_dssp             CCGGGCEEEEEEE-CCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CChhhCEEEEEEE-ecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCC
Confidence            9999999999999 55410  1111223456665    355554 333445667999999999987 6766 89999988


Q ss_pred             eeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        244 DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      ..+..........  .......+.|+|.....+| |.|+|.|.|..+.    ....+.|.+.
T Consensus       165 ~~~~~~~~~~~~~--~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~----~~~~~~~~~~  219 (253)
T 3liz_H          165 LSSGVHTFPAVLQ--SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS----TKVDKKIVPR  219 (253)
T ss_dssp             BCTTEEECCCEEE--TTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGT----EEEEEECCCC
T ss_pred             eecceEeCCcccc--CCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCC----cceEEEecCc
Confidence            6321100000000  0001124789999999999 9999999999955    5556665554

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.76  E-value=9.9e-18  Score=150.29  Aligned_cols=169  Identities=16%  Similarity=0.245  Sum_probs=114.8

Q ss_pred             eEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeecccc--------ccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        117 KVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEA--------TELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~--------~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      ..+..|++++|.|.+ .+.+   .+.|.|++++..+...        ..+..+.. ..+.+|.|.+++.+|+|.|+|.+ 
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~-  451 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKP---PQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQA-  451 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSS---SCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEE-
T ss_pred             cceecCCcEEEeeeecCCCC---CceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEE-
Confidence            446789999999998 6655   6899999987633110        01122333 44458999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEec---ceeeeeceeEEeeCCe-EEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeec----
Q psy15235        187 DPKSTNTTPLAQADFDVIMK---PTAKLVETLTVIEGEK-LRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSE----  257 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~-~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~----  257 (323)
                      .+..+. .....+.|.|..+   |.+..... .+..+.. +.|.|.+.+ +|.|.+.|++|+..+.....++.+..    
T Consensus       452 ~n~~~~-~~~~~~~l~V~~~~~~p~i~~~~~-~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~  529 (581)
T 3o3u_N          452 MNRNGK-ETKSNYRVRVYQIPGKPEIVDSAS-ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRR  529 (581)
T ss_dssp             ECTTSC-EEEEEEEEEEEBCCCCCEEESCCS-EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEE
T ss_pred             EcCCCc-eeEEEEEEEEEcCCCCCEEEcCCc-ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEE
Confidence            666322 1245677777663   34433322 3445544 567999987 69999999999998875444433211    


Q ss_pred             --CCCCCCcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235        258 --HPEKGTANSVLQIDEATMAD-RGNYYCHGNNVATR  291 (323)
Q Consensus       258 --~~~~~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~  291 (323)
                        ........++|+|.+++.+| .|.|+|.|.|..+.
T Consensus       530 ~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          530 HPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             CTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             cCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence              11112345789999998554 78999999999744

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.75  E-value=6.7e-18  Score=133.50  Aligned_cols=183  Identities=16%  Similarity=0.144  Sum_probs=102.2

Q ss_pred             CcchhHHHHHHHHHHhhhccCCceEEEeeceEEecCCcEEEEEEecc---Cc-eEEEEEcC--ccceee---------cc
Q psy15235          1 MSMIHLCLSLLAIFVHQSISADGKITYFGDTEIMEGAPINISCILTI---FE-QVKWQLNG--RNINQS---------SV   65 (323)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~G~~v~L~C~~~~---~~-~v~W~~~g--~~~~~~---------~~   65 (323)
                      |.++.+++.++++. . .......+..+..+.+.+|++|+|.|.+.+   .+ .+.|+|++  ..+...         ..
T Consensus         1 M~~~~~ll~ll~~~-~-~~~~~~~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~   78 (234)
T 2j6e_L            1 MAGFPLLLTLLTHC-A-GSWAQSVLTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGV   78 (234)
T ss_dssp             ---------------------CCCCBCCSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSS
T ss_pred             CchhHHHHHHHHhh-c-ccccccEEeCCCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCc
Confidence            54454444443332 2 223334444477788999999999999542   23 69999963  322110         01


Q ss_pred             CcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCc-------cceeeeee--eCCceeE------EecCCcEEEE
Q psy15235         66 DSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRM-------NAITGNYD--IEPKYKV------FEYRVPFTLK  128 (323)
Q Consensus        66 ~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~-------~~~~~~~~--~~~~~~~------~~~g~~v~l~  128 (323)
                      ..+  +......+...|.|.+++  |+|.|+|.+.+..+.       ..+.+...  ..|.+..      ...|+.++|.
T Consensus        79 ~~r--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~  156 (234)
T 2j6e_L           79 PDR--FSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLV  156 (234)
T ss_dssp             CTT--EEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEE
T ss_pred             ccc--EEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEE
Confidence            111  222234566677777765  499999999876651       11111000  1222222      1248899999


Q ss_pred             EEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        129 CNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       129 C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |.+.+.+|. .+.|.|+++|..+...........      .....|.|.++..+|+|.|+|.| .|.
T Consensus       157 C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a-~n~  221 (234)
T 2j6e_L          157 CLISDFFPG-AVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQV-THE  221 (234)
T ss_dssp             ECCCBCSSC-CCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEE-EBT
T ss_pred             EEEEEEcCC-ceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEE-EeC
Confidence            999986542 259999999998754211000000      23356889999999999999999 666

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.75  E-value=2.1e-18  Score=133.80  Aligned_cols=168  Identities=15%  Similarity=0.232  Sum_probs=97.9

Q ss_pred             ecCCcEEEEEEeecCCCC-CCceEEEEECCeeccccccccCcEEeceeE------EEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        120 EYRVPFTLKCNVTSPPPG-DDYQIVWYKGNKSITEATELSGRLTQSKDS------ITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      ..|++++|.|.+.+.+|. ....|.|+|++..+..... ..........      |.|.....+|+|.|+|.+ .+..+.
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~-~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a-~n~~~~   93 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT-KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKV-SNKALP   93 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE-CCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEE-ECTTSS
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCccc-CCceeccCCcEEEEEEEEEEHHHccCCceEEEEE-EcCcCC
Confidence            689999999999886531 0359999999987654110 0011111122      233333344599999999 666432


Q ss_pred             CCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC-Ccce
Q psy15235        193 TTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANS  266 (323)
Q Consensus       193 ~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~  266 (323)
                      ......+.+  .+..+|.+.+.. ......|..+.|.|.+.|. |+ +.+.|+++|..+.... ........++. ...+
T Consensus        94 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~-~~~~~~~~~gt~~~~s  172 (207)
T 1l6x_A           94 APIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK-TTPPVLDSDGSFFLYS  172 (207)
T ss_dssp             SCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE-ECCCEECTTSCEEEEE
T ss_pred             cceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCcc-ccCceECCCCCEEEEE
Confidence            211222221  233456554221 1112246679999999885 54 3899999998775321 11111001111 1234


Q ss_pred             eEEEeecCcCCCeEEEEEEeeccc
Q psy15235        267 VLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       267 ~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .|.|.....+|.|.|+|.|.|...
T Consensus       173 ~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          173 KLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             EEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEECHHHcCCCCEEEEEEEcCCc
Confidence            566777767789999999999873

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.75  E-value=2.2e-17  Score=134.09  Aligned_cols=176  Identities=13%  Similarity=0.269  Sum_probs=111.9

Q ss_pred             eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc-------------ccccccCcEE-----eceeEEEE
Q psy15235        111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT-------------EATELSGRLT-----QSKDSITI  170 (323)
Q Consensus       111 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~-------------~~~~~~~~~~-----~~~~~l~i  170 (323)
                      ...|....+.+|++++|.|.+.+.+   .+.+.|+|++  ....             ......+|+.     .....|.|
T Consensus        28 ~~~p~~v~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (279)
T 2wbj_D           28 SQHPSWVISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV  104 (279)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSSC---EEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred             EeCCCeEEecCCCeEEEEEEeCCCC---CCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence            3356667788999999999998766   7899999853  1110             0011234554     13458999


Q ss_pred             eeeecCCCeeEEEEEEcCCCC----CCCCceeeeeEEEe------cceeeee--ceeEEeeCCeEEEEEEEecC-CC-Cc
Q psy15235        171 RKTTVDDAGQYSCRLIDPKST----NTTPLAQADFDVIM------KPTAKLV--ETLTVIEGEKLRLECLVVGS-PP-PT  236 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~~~----~~~~~~~~~l~v~~------~p~~~~~--~~~~~~~g~~~~l~C~~~g~-p~-~~  236 (323)
                      .+++.+|+|.|.|.+ .+..+    .........|.|..      +|.+.+.  ....+.+|+.++|.|.+.|. |+ +.
T Consensus       105 ~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          105 TSAHPEDSSFYICSA-RDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             SSCCGGGCEEEEEEE-EETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             ccCCccCCEEEEEEE-cccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999 55211    00112234566654      4444422  11223468999999999886 54 58


Q ss_pred             EEEEECCeeeeccCCeee------eecCCCC-CCcceeEEEeecCcCC-CeEEEEEEeecccC
Q psy15235        237 VEWRIGNDTYFRSQGRIK------LSEHPEK-GTANSVLQIDEATMAD-RGNYYCHGNNVATR  291 (323)
Q Consensus       237 ~~W~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g~  291 (323)
                      +.|++|+..+.... ...      +....++ ....+.|.|.....+| .|.|+|.|.|....
T Consensus       184 v~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          184 LSWWVNGKEVHSGV-STDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             EEEEETTEECCTTE-EECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             EEEEECCEECCCCc-ccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            99999998875321 110      0000111 1124568888887765 67899999998754

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.75  E-value=1.8e-17  Score=129.09  Aligned_cols=169  Identities=15%  Similarity=0.258  Sum_probs=104.9

Q ss_pred             eEEEeeceEEecCCcEEEEEEec---------cCceEEEEEcCcc------ceee--------ccCcceEEEeeeeCCeE
Q psy15235         24 KITYFGDTEIMEGAPINISCILT---------IFEQVKWQLNGRN------INQS--------SVDSGFAATANLTEDNF   80 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~---------~~~~v~W~~~g~~------~~~~--------~~~~~~~~~~~~~~~~~   80 (323)
                      .+..+..+.+.+|++|+|.|.+.         +.+.+.|+|++..      +...        ....+..+..+...++.
T Consensus         3 ~~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   82 (214)
T 2zg1_A            3 ELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNC   82 (214)
T ss_dssp             EEECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBC
T ss_pred             eeeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeE
Confidence            45567778999999999999954         3568999997652      1110        01122222222223455


Q ss_pred             EEEEeecc--cCcceEEEeeccCCc------cceeeeeee---CCcee---EEecCCcEEEEEEeecC----CCCCCceE
Q psy15235         81 KYSIHEAI--LESGYVQSSLFIPRM------NAITGNYDI---EPKYK---VFEYRVPFTLKCNVTSP----PPGDDYQI  142 (323)
Q Consensus        81 ~l~i~~~~--~~G~Y~C~~~~~~~~------~~~~~~~~~---~~~~~---~~~~g~~v~l~C~~~~~----~~~~~~~i  142 (323)
                      .|.|.+++  |+|.|+|.+.+..+.      ..+...+..   .|.+.   .+.+|+.++|.|.+.+.    |   .+.+
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p---~p~v  159 (214)
T 2zg1_A           83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGP---PLTF  159 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSS---CCEE
T ss_pred             EEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCC---CceE
Confidence            67776665  499999999876421      111111111   12111   14579999999999874    4   6899


Q ss_pred             EEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeE
Q psy15235        143 VWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFD  202 (323)
Q Consensus       143 ~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~  202 (323)
                      .|++++.....     .+. .....|.|..+..+|+|.|+|.| .|..+....+..+.|.
T Consensus       160 ~W~~~~~~~~~-----~~~-~~~~~L~i~~~~~~~~g~Y~C~a-~n~~~~~~~~~~v~l~  212 (214)
T 2zg1_A          160 SWTGNALSPLD-----PET-TRSSELTLTPRPEDHGTNLTCQM-KRQGAQVTTERTVQLN  212 (214)
T ss_dssp             EEESSTTSSSC-----SSC-CCSSEEEECCCTTCCSCEEEEEE-ECC----CCEEEEECC
T ss_pred             EEeCCCCccCC-----CCc-eeEEEEEEecccHHcCcEEEEEE-EeCCCCcceEEEEEEE
Confidence            99999865432     111 34568999999999999999999 7764343444444443

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.75  E-value=3.8e-18  Score=135.08  Aligned_cols=167  Identities=12%  Similarity=0.227  Sum_probs=105.0

Q ss_pred             EecCCcEEEEEEeecCC--CCCCc-eEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        119 FEYRVPFTLKCNVTSPP--PGDDY-QIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~--~~~~~-~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +..|++++|.|.+.+..  |  .+ .|.|++++..+.....      ..+++ .....|.|.+++.+|+|.|+|.+ .+.
T Consensus        29 v~~G~~v~L~C~~~g~~~~P--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~s~L~I~~~~~~D~g~Y~C~~-~~~  104 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQND--PEVRFSWFIDDVEVHTAQTHAPEKQSNSTL-RSVSELPIVERDWLNGKTFKCKV-NSG  104 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTC--CCCEEEEEESSCEECCCEECCCEECTTSCE-EEEEEEECCHHHHHTTCCEEEEE-ECS
T ss_pred             cccCCcEEEEEEEecCccCC--CCCEEEEEECCccccCcccccceEcCCCcE-EEEEEEEEEhhHccCCCeEEEEE-ecc
Confidence            56899999999998762  3  44 8999998866543110      01222 23457999999999999999999 666


Q ss_pred             CCCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC-C
Q psy15235        190 STNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG-T  263 (323)
Q Consensus       190 ~~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~  263 (323)
                      .+.......+.+  .+..+|.+.+.. ......|+.+.|.|.+.|. |+ ..+.|++||..+.... ........++. .
T Consensus       105 ~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~-~~~~~~~~dgt~~  183 (239)
T 1i1c_A          105 AFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYK-NTPPTMDTDGSYF  183 (239)
T ss_dssp             SSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEE-ECCCEECTTSCEE
T ss_pred             cCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCce-ecCceECCCCCEE
Confidence            433212222222  334456555322 1112347899999999884 54 3799999998774321 11111001111 1


Q ss_pred             cceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ..+.|.|.....+|.|.|+|.|.|...
T Consensus       184 ~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          184 LYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             EEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEEEEChhhcCCCCEEEEEEECCCC
Confidence            234566666666789999999999873

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.75  E-value=9.6e-17  Score=124.91  Aligned_cols=159  Identities=14%  Similarity=0.134  Sum_probs=102.3

Q ss_pred             eeceEEecCCcEEEEEEec--cCceEEEEEc--Cccceeecc-------CcceEEEeeeeCCeEEEEEeeccc--CcceE
Q psy15235         28 FGDTEIMEGAPINISCILT--IFEQVKWQLN--GRNINQSSV-------DSGFAATANLTEDNFKYSIHEAIL--ESGYV   94 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~--g~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~   94 (323)
                      +..+.+.+|++|+|.|.+.  +.+.+.|+|.  +........       .....+..........|.|.+++.  +|.|+
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (213)
T 3mj8_L            7 PPLVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYY   86 (213)
T ss_dssp             CSEEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEE
Confidence            3367899999999999954  5689999993  332221100       001112222356677888888764  99999


Q ss_pred             EEeeccCCc-----cceeeeee----eCCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc--
Q psy15235         95 QSSLFIPRM-----NAITGNYD----IEPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL--  157 (323)
Q Consensus        95 C~~~~~~~~-----~~~~~~~~----~~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~--  157 (323)
                      |.+.+..+.     ......+.    ..|.+..      +..|+.++|.|.+.+.+|. .+.|.|+++|..+......  
T Consensus        87 C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~  165 (213)
T 3mj8_L           87 CQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPA-DVAVTWEADGTPITQGVKTTQ  165 (213)
T ss_dssp             EEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEECC
T ss_pred             EEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCC-CeEEEEEcCCcccCCCcccCC
Confidence            999887651     11111222    1233322      2269999999999986431 3599999999988641111  


Q ss_pred             ----cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        158 ----SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       158 ----~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                          ...+ .....|.|.++..+|+|.|+|.| .|.
T Consensus       166 ~~~~~~~~-~~~s~L~i~~~~~~d~G~Y~C~a-~n~  199 (213)
T 3mj8_L          166 PSKSDSKY-MATSYLTMTADAWKSRNTFICKV-THG  199 (213)
T ss_dssp             CEEETTEE-EEEEEEEEESHHHHSCSCEEEEE-EET
T ss_pred             cCccCCcE-EEEEEEEEeHHHcCCCCEEEEEE-EEC
Confidence                1111 23456899999999999999999 666

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.74  E-value=1.3e-17  Score=130.58  Aligned_cols=179  Identities=15%  Similarity=0.171  Sum_probs=108.8

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc--Cc---eEEEEEcCccceeeccC------------cce-EE-----EeeeeCCe
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI--FE---QVKWQLNGRNINQSSVD------------SGF-AA-----TANLTEDN   79 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~--~~---~v~W~~~g~~~~~~~~~------------~~~-~~-----~~~~~~~~   79 (323)
                      ..+..+.++.+.+|++|+|.|.+.+  .+   .++|+|++..+......            ... ..     .......+
T Consensus         3 v~V~vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (225)
T 4fmk_A            3 VRVRVLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRD   82 (225)
T ss_dssp             CSEECCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCB
T ss_pred             EEEEeCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCc
Confidence            4566677788999999999999643  22   48999987654332100            000 00     01111334


Q ss_pred             EEEEEeecc--cCcceEEEeeccCCccceee-eeee--CC------ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC
Q psy15235         80 FKYSIHEAI--LESGYVQSSLFIPRMNAITG-NYDI--EP------KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN  148 (323)
Q Consensus        80 ~~l~i~~~~--~~G~Y~C~~~~~~~~~~~~~-~~~~--~~------~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~  148 (323)
                      ..|.|.+++  |+|.|+|.+.+..+...... ...+  .+      .......++.+.+.|.+.+.+|  .+.+.|++++
T Consensus        83 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P--~~~~~w~~~~  160 (225)
T 4fmk_A           83 ATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRP--PARITWISSL  160 (225)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBS--CCEEEEECSS
T ss_pred             EEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCC--CCEEEEEECC
Confidence            456666655  49999999987655432111 1111  11      1122445677788887665444  6899999987


Q ss_pred             eecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe
Q psy15235        149 KSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM  205 (323)
Q Consensus       149 ~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~  205 (323)
                      ..+.....    ..+.+ .....|.|.++..+|+|.|+|.| .|..+......+++|.|++
T Consensus       161 ~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~YtC~a-~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          161 GGEAKDTQEPGIQAGTV-TIISRYSLVPVGRADGVKVTCRV-EHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             CCEEEEEEEECSSTTCE-EEEEEEEECCCGGGTTCEEEEEE-ECTTCSSCEEEEEECCBTT
T ss_pred             ccccCCcceEEecCCCE-EEEEEEEEeeCCHHHCCEEEEEE-EcCCCCeEEEEEEEEEEEE
Confidence            65543100    01111 22457999999999999999999 7876665556666666654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.74  E-value=2.9e-17  Score=131.08  Aligned_cols=156  Identities=15%  Similarity=0.230  Sum_probs=101.3

Q ss_pred             eceEEecCCcEEEEEEe-----ccCceEEEEEcCccceeec--------------------------cCcceEEEeeeeC
Q psy15235         29 GDTEIMEGAPINISCIL-----TIFEQVKWQLNGRNINQSS--------------------------VDSGFAATANLTE   77 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~-----~~~~~v~W~~~g~~~~~~~--------------------------~~~~~~~~~~~~~   77 (323)
                      .++.+.+|++++|.|.+     .+.+.+.|++++.......                          ...++. .+.. .
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~-~   87 (250)
T 2fbo_J           10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRA-SVAN-L   87 (250)
T ss_dssp             SEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTE-ECSC-T
T ss_pred             CceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceE-Eecc-C
Confidence            46789999999999994     4567899999875431100                          000111 0110 1


Q ss_pred             CeEEEEEeecc--cCcceEEEeeccCCccc-----eeeeeee------------CCceeEEecCCcEEEEEEeecCCCCC
Q psy15235         78 DNFKYSIHEAI--LESGYVQSSLFIPRMNA-----ITGNYDI------------EPKYKVFEYRVPFTLKCNVTSPPPGD  138 (323)
Q Consensus        78 ~~~~l~i~~~~--~~G~Y~C~~~~~~~~~~-----~~~~~~~------------~~~~~~~~~g~~v~l~C~~~~~~~~~  138 (323)
                      +...|.|.+++  |+|.|+|.+.+..+...     ....+.+            .+....+.+|+.++|.|.+.+.+   
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p---  164 (250)
T 2fbo_J           88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCA---  164 (250)
T ss_dssp             TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCT---
T ss_pred             CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCC---
Confidence            23456666655  59999999998665321     1222222            11223355699999999999988   


Q ss_pred             CceEEEEECCeecccccc--------------------ccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        139 DYQIVWYKGNKSITEATE--------------------LSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       139 ~~~i~W~~~~~~~~~~~~--------------------~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .+.|.|++++..+.....                    +..+.. .....|.|.+++.+|+|.|+|.| .|..
T Consensus       165 ~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N~~  236 (250)
T 2fbo_J          165 NANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCEL-ATGQ  236 (250)
T ss_dssp             TCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEE-ESSS
T ss_pred             CCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEe-cCCc
Confidence            679999999887643110                    011221 24478999999999999999999 7754

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.74  E-value=1e-17  Score=135.26  Aligned_cols=173  Identities=12%  Similarity=0.203  Sum_probs=108.0

Q ss_pred             EeeceEEecCCcEEEEEEec-----cCceEEEEEcCccceee---------------ccCcceEEEeeeeCCeEEEEEee
Q psy15235         27 YFGDTEIMEGAPINISCILT-----IFEQVKWQLNGRNINQS---------------SVDSGFAATANLTEDNFKYSIHE   86 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~-----~~~~v~W~~~g~~~~~~---------------~~~~~~~~~~~~~~~~~~l~i~~   86 (323)
                      .+..+.+.+|++++|.|.+.     +.+.+.|++++......               ....+..+..+...++..|.|.+
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   90 (268)
T 3mj6_A           11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQD   90 (268)
T ss_dssp             -CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECS
T ss_pred             CCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECC
Confidence            34567899999999999954     34679999966433111               00111111111123335566666


Q ss_pred             cc--cCcceEEEeeccCCcc--ceeeeeee---CCceeEEecCCcEEEEEEe---ecCCCCCCceEEEEEC-Ceeccc--
Q psy15235         87 AI--LESGYVQSSLFIPRMN--AITGNYDI---EPKYKVFEYRVPFTLKCNV---TSPPPGDDYQIVWYKG-NKSITE--  153 (323)
Q Consensus        87 ~~--~~G~Y~C~~~~~~~~~--~~~~~~~~---~~~~~~~~~g~~v~l~C~~---~~~~~~~~~~i~W~~~-~~~~~~--  153 (323)
                      ++  |+|.|+|.+.+.....  .....+.+   .|....+..|+.++|.|.+   .+.+   .+.+.|+++ +.....  
T Consensus        91 v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p---~~~v~W~~~~~~~~~~~~  167 (268)
T 3mj6_A           91 VQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKR---VTKVNWMFSSGSHTEEET  167 (268)
T ss_dssp             CCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSC---CCEEEEEEECTTCSSCEE
T ss_pred             CCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCC---ccceEEEecCCCCCccee
Confidence            65  4999999998765443  22222322   4556678899999999999   4445   789999994 321110  


Q ss_pred             ---------------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe
Q psy15235        154 ---------------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM  205 (323)
Q Consensus       154 ---------------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~  205 (323)
                                     ...+..++.      .....|.|.++..+|+|.|+|.| .|.  .......+.|.|..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~n~--~g~~~~~~~l~V~~  237 (268)
T 3mj6_A          168 VLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSI-YVG--KLESRKTIVLHVVQ  237 (268)
T ss_dssp             EEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEE-EET--TEEEEEEEEEEEEC
T ss_pred             EEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEE-EcC--CceEEEEEEEEEEc
Confidence                           001111221      24678999999999999999999 665  33455666677643

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.74  E-value=5.4e-17  Score=129.89  Aligned_cols=172  Identities=14%  Similarity=0.328  Sum_probs=106.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec---cc--------cccccC-cEE----eceeEEEEeeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI---TE--------ATELSG-RLT----QSKDSITIRKTT  174 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~---~~--------~~~~~~-~~~----~~~~~l~i~~~~  174 (323)
                      .|....+.+|++++|.|.+.+.+   ...+.|||.  +...   ..        .....+ |+.    .... |.|.+++
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~   82 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQ---YPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVAN   82 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTT---CCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEES
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCC---cceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCC
Confidence            45566788999999999987766   679999982  2111   00        001112 544    1112 9999999


Q ss_pred             cCCCeeEEEEEEcCCCC----CCCCceeeeeEEE------ecceeeee--ceeEEeeCCeEEEEEEEec-CCCC-cEEEE
Q psy15235        175 VDDAGQYSCRLIDPKST----NTTPLAQADFDVI------MKPTAKLV--ETLTVIEGEKLRLECLVVG-SPPP-TVEWR  240 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~----~~~~~~~~~l~v~------~~p~~~~~--~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~  240 (323)
                      .+|+|.|.|.+ .+..+    .........+.|.      .+|.+.+.  ....+..|+.++|.|.+.| .|++ .+.|+
T Consensus        83 ~~DsG~Y~C~~-~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~  161 (253)
T 3to4_D           83 MSQGRTLYCTS-SADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (253)
T ss_dssp             CSSCEEEEEEE-ECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             hhhCeEEEEEE-ecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEE
Confidence            99999999999 54421    1111223355554      23444321  1112234689999999988 5766 89999


Q ss_pred             ECCeeeeccCCeee--eecC-C-CCC--CcceeEEEeecCcCC-CeEEEEEEeecc
Q psy15235        241 IGNDTYFRSQGRIK--LSEH-P-EKG--TANSVLQIDEATMAD-RGNYYCHGNNVA  289 (323)
Q Consensus       241 ~~~~~~~~~~~~~~--~~~~-~-~~~--~~~~~L~i~~v~~~d-~G~y~C~a~n~~  289 (323)
                      ++|..+........  .... + .++  ...+.|.|.....+| .|.|+|.|.|..
T Consensus       162 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          162 VNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             ETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             ECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            99988753211100  0000 0 111  123678899888888 679999999986

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.74  E-value=8.2e-17  Score=127.92  Aligned_cols=182  Identities=18%  Similarity=0.217  Sum_probs=113.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eec---cc-c--------cc-ccCcEEe------ceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSI---TE-A--------TE-LSGRLTQ------SKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~---~~-~--------~~-~~~~~~~------~~~~l~i~  171 (323)
                      .|....+.+|++++|.|.+.+.... ...+.|||..  ...   .. .        .. ..+|+..      ....|.|.
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (242)
T 1hxm_B            7 PQISSTKTLSKTARLECVVSGITIS-ATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIH   85 (242)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTT-TSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEEC
T ss_pred             CCceEEecCCCcEEEEEEeCCcccc-CceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEEC
Confidence            4666778899999999999875211 5799999843  211   10 0        01 3456651      35789999


Q ss_pred             eeecCCCeeEEEEEEcCCCC-C----CCCceeeeeEEEec-------ceee--eeceeEEeeCCeEEEEEEEecC-CC-C
Q psy15235        172 KTTVDDAGQYSCRLIDPKST-N----TTPLAQADFDVIMK-------PTAK--LVETLTVIEGEKLRLECLVVGS-PP-P  235 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~-~----~~~~~~~~l~v~~~-------p~~~--~~~~~~~~~g~~~~l~C~~~g~-p~-~  235 (323)
                      +++.+|+|.|.|.+ .+... .    ........|.|...       |.+.  .+....+.+|+.++|.|.+.|. |. +
T Consensus        86 ~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~  164 (242)
T 1hxm_B           86 NVEKQDIATYYCAL-WEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVI  164 (242)
T ss_dssp             SCCGGGCEEEEEEE-EEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCE
T ss_pred             CCCcccCEEEEEee-ecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCe
Confidence            99999999999999 44310 0    01122346677642       3222  2222334569999999999876 64 6


Q ss_pred             cEEEEECCe-eeeccC-CeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        236 TVEWRIGND-TYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       236 ~~~W~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      .+.|++++. .+.... ......  .......+.|+|..+.. | |.|+|.|.|..+.    ......+.+
T Consensus       165 ~v~W~~~~~~~l~~~~~~~~~~~--~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~----~~~~~~~~~  227 (242)
T 1hxm_B          165 KIHWEEKKSNTILGSQEGNTMKT--NDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNK----NGVDQEIIF  227 (242)
T ss_dssp             EEEEEESSSCCCCCCEECCCEEC--SSSEEEEEEEEECTGGG-G-SCEEEEEEETTSG----GGSCEEEEE
T ss_pred             EEEEEcCCCEeecCccccceecC--CCcEEEEEEEEEccccC-C-CEEEEEEEeCCCC----CCceeEeec
Confidence            899999987 453211 111100  00111246789987775 4 9999999999865    334445555

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.73  E-value=6.9e-18  Score=133.09  Aligned_cols=173  Identities=12%  Similarity=0.217  Sum_probs=109.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeec-cccc-----cccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI-TEAT-----ELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~-~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .|....+..|+.++|.|.+.+..|.+...|.|+++|..+ ....     ..++.+ .....|.|.++..+|+|.|+|.+ 
T Consensus        19 ~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~-~~~s~L~I~~~~~~D~g~Y~C~~-   96 (231)
T 2w59_A           19 PPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTY-SASSAVPVSTQDWLSGERFTCTV-   96 (231)
T ss_dssp             CCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCE-EEEEEEECCHHHHHTTCCEEEEE-
T ss_pred             CcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcE-EEEEEEEecchhccCCCEEEEEE-
Confidence            344334568999999999988643101499999998876 3210     011222 23457999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEE------ecceeeee-ceeEEeeCCeEEEEEEEecC-C-CCcEEEEECCeeeeccCCeee-ee
Q psy15235        187 DPKSTNTTPLAQADFDVI------MKPTAKLV-ETLTVIEGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQGRIK-LS  256 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~------~~p~~~~~-~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~~~-~~  256 (323)
                      .+....    ....+.|.      .+|.+.+. +......+..+.|.|.+.|. | .+.+.|++||..+........ ..
T Consensus        97 ~~~~~~----~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~  172 (231)
T 2w59_A           97 QHEELP----LPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVL  172 (231)
T ss_dssp             ECTTCS----SCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCE
T ss_pred             EcCCCC----CceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccc
Confidence            666322    23333332      34544422 11111235679999999885 4 368999999998754321110 01


Q ss_pred             cC--------CC-C-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        257 EH--------PE-K-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       257 ~~--------~~-~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ..        .+ + ....+.|.|.....+|.|.|+|.|.|....
T Consensus       173 ~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          173 PEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             ECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             cCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            00        11 1 123467889999989999999999998743

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.73  E-value=3.6e-16  Score=125.30  Aligned_cols=178  Identities=13%  Similarity=0.159  Sum_probs=110.1

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+..+.+..+.+|++|+|.|.+.+    .+.+.|+|..  ..+...              ....+.....+.......|
T Consensus         4 ~~v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   83 (256)
T 3umt_A            4 VQLQQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYL   83 (256)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred             ceEEccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEE
Confidence            4566677788999999999999543    5789999842  222110              0112222333333556778


Q ss_pred             EEeeccc--CcceEEEeeccCC----c----cceee--------------------eeeeCCceeEEecCCcEEEEEEee
Q psy15235         83 SIHEAIL--ESGYVQSSLFIPR----M----NAITG--------------------NYDIEPKYKVFEYRVPFTLKCNVT  132 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~~----~----~~~~~--------------------~~~~~~~~~~~~~g~~v~l~C~~~  132 (323)
                      .|.+++.  +|.|+|.+.+...    .    ..+.+                    .+...+....+.+|++++|.|.+.
T Consensus        84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~  163 (256)
T 3umt_A           84 ELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRAS  163 (256)
T ss_dssp             EECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEES
T ss_pred             EECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEe
Confidence            8887754  9999999987611    1    11111                    111234445678899999999999


Q ss_pred             cCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235        133 SPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ  198 (323)
Q Consensus       133 ~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  198 (323)
                      +.+   .+.+.|+|+  +.....        ......++.    .....|.|.+++.+|+|.|+|.+ .+.... .....
T Consensus       164 ~~~---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~~~~-~fg~g  238 (256)
T 3umt_A          164 QDI---GSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQ-YASSPP-TFGGG  238 (256)
T ss_dssp             SCC---TTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE-CSSSSC-EECCC
T ss_pred             cCC---CcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEE-eeCCCc-EECCC
Confidence            977   569999984  222110        011134443    34557999999999999999999 664221 22333


Q ss_pred             eeeEEEe
Q psy15235        199 ADFDVIM  205 (323)
Q Consensus       199 ~~l~v~~  205 (323)
                      ..|.|..
T Consensus       239 t~L~V~~  245 (256)
T 3umt_A          239 TKLEIKR  245 (256)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEEC
Confidence            4455544

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.73  E-value=1.4e-16  Score=130.11  Aligned_cols=166  Identities=14%  Similarity=0.196  Sum_probs=104.8

Q ss_pred             cCCceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e-----------ccCcceEEEeeeeCCe
Q psy15235         20 SADGKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S-----------SVDSGFAATANLTEDN   79 (323)
Q Consensus        20 ~~~~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~-----------~~~~~~~~~~~~~~~~   79 (323)
                      .....+..+..+.+.+|++|+|.|.+..    .+.+.|+|++  ..+..   .           ....+.....+.....
T Consensus        21 ~~~~~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~  100 (291)
T 2gki_A           21 AREVQLQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSST  100 (291)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTE
T ss_pred             cccEEEEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCE
Confidence            4566677778889999999999999543    4689999953  22211   0           0111222222223456


Q ss_pred             EEEEEeecc--cCcceEEEeeccC-C--c------cceeeee--------------------eeCCceeEEecCCcEEEE
Q psy15235         80 FKYSIHEAI--LESGYVQSSLFIP-R--M------NAITGNY--------------------DIEPKYKVFEYRVPFTLK  128 (323)
Q Consensus        80 ~~l~i~~~~--~~G~Y~C~~~~~~-~--~------~~~~~~~--------------------~~~~~~~~~~~g~~v~l~  128 (323)
                      ..|.|.+++  |+|.|+|.+.+.. +  .      ..+.+..                    ...+....+.+|++++|.
T Consensus       101 ~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~  180 (291)
T 2gki_A          101 AYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMS  180 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEE
T ss_pred             EEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEE
Confidence            778888776  4999999998763 1  0      0111111                    112334557899999999


Q ss_pred             EEeecCCCCCCc------eEEEEECC--eecc---cc-----ccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        129 CNVTSPPPGDDY------QIVWYKGN--KSIT---EA-----TELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       129 C~~~~~~~~~~~------~i~W~~~~--~~~~---~~-----~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      |.+.+.+   .+      .+.|+|+.  ....   ..     .....++.    .....|+|.+++.+|+|.|+|.+ .+
T Consensus       181 C~~~~~~---~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~~  256 (291)
T 2gki_A          181 CKSSQSL---FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQ-SY  256 (291)
T ss_dssp             EEESSCC---EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE-EE
T ss_pred             EEcCCcc---ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEE-cc
Confidence            9998876   44      89999963  2111   00     01134443    23468999999999999999999 55


Q ss_pred             C
Q psy15235        189 K  189 (323)
Q Consensus       189 ~  189 (323)
                      .
T Consensus       257 ~  257 (291)
T 2gki_A          257 Y  257 (291)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.73  E-value=5.2e-16  Score=124.32  Aligned_cols=163  Identities=14%  Similarity=0.200  Sum_probs=105.8

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Ccccee---e-----------ccCcceEEEeeeeCCeEEEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQ---S-----------SVDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~---~-----------~~~~~~~~~~~~~~~~~~l~   83 (323)
                      .+..+.++.+.+|++|+|.|.+.+    .+.+.|+|+  +..+..   .           ....+..+..+...+...|.
T Consensus         3 ~l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (256)
T 1nqb_A            3 QLQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQ   82 (256)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEE
Confidence            456778889999999999999543    468999994  332211   0           01122222222234567788


Q ss_pred             Eeeccc--CcceEEEeeccCCc---c----ceee------eeeeCCceeEEecCCcEEEEEEeecCCCCCC----ceEEE
Q psy15235         84 IHEAIL--ESGYVQSSLFIPRM---N----AITG------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDD----YQIVW  144 (323)
Q Consensus        84 i~~~~~--~G~Y~C~~~~~~~~---~----~~~~------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~----~~i~W  144 (323)
                      |.+++.  +|.|+|.+.+..+.   .    ....      .+...|....+.+|++++|.|.+.+.++  .    +.+.|
T Consensus        83 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~--~~~~~~~v~W  160 (256)
T 1nqb_A           83 LSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIV--HSNGNTYLEW  160 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCB--CTTSCBCEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCccc--ccccceEEEE
Confidence            887764  99999999886431   1    1111      1111344455788999999999998773  2    49999


Q ss_pred             EE--CCeeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        145 YK--GNKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       145 ~~--~~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +|  ++..+..        ......++.    .....|.|.+++.+|+|.|+|.+ .+.
T Consensus       161 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~~~  218 (256)
T 1nqb_A          161 YLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQ-GSH  218 (256)
T ss_dssp             EEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE-CSS
T ss_pred             EEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEE-ccC
Confidence            99  5554311        001123443    34568999999999999999999 654

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.73  E-value=6.4e-17  Score=129.80  Aligned_cols=172  Identities=18%  Similarity=0.264  Sum_probs=110.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc-------------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE-------------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~-------------~~~~~~~~~------~~~~~l~i~  171 (323)
                      .|....+.+|++++|.|.+.+.+.. .+.+.|||+.  ..+..             ......|+.      .....|.|.
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   90 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFT-SYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS   90 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccC-CceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence            3556678899999999999875421 3689999863  21110             011245654      135689999


Q ss_pred             eeecCCCeeEEEEEEcCCCCCC-CCceeeeeEEEe----cceee-eeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECC
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTNT-TPLAQADFDVIM----KPTAK-LVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGN  243 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~  243 (323)
                      +++.+|+|.|.|.+ .+..+.. .......|.|..    +|.+. ..+...+..|+.++|.|.+.+. |.+ .+.|++++
T Consensus        91 ~v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g  169 (261)
T 2xqy_G           91 SLTSEDSAVYYCGR-LGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS  169 (261)
T ss_dssp             SCCGGGCEEEEEEE-ECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             CCCcccCeEEEEEE-ecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCC
Confidence            99999999999999 5542100 111234666654    34444 2323346679999999999875 766 89999988


Q ss_pred             eeeecc-CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        244 DTYFRS-QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       244 ~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ..+... ..... .  .......+.|+|..+..+| |.|+|.|.|...
T Consensus       170 ~~~~~~~~~~~~-~--~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~  213 (261)
T 2xqy_G          170 LSSGVHTFPAVL-Q--SDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS  213 (261)
T ss_dssp             CCTTEEECCCEE-E--TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             CcCceEecCcee-c--CCcEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence            654211 11110 0  1011135789999988888 999999999873

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.73  E-value=8e-17  Score=125.59  Aligned_cols=171  Identities=19%  Similarity=0.232  Sum_probs=105.9

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c---------cccccCcEE-e-----ceeEEEEeee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E---------ATELSGRLT-Q-----SKDSITIRKT  173 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~---------~~~~~~~~~-~-----~~~~l~i~~~  173 (323)
                      |....+.+|++++|.|.+.+.+.. .+.+.|||+.  ....   .         ...+.+|+. .     ....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLT-TNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTT-SCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCC-CCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            344567889999999999875421 4789999852  2111   0         011245554 1     2458999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCC-CCceeeeeEEEe----cceeee-eceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCee
Q psy15235        174 TVDDAGQYSCRLIDPKSTNT-TPLAQADFDVIM----KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDT  245 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~----~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~  245 (323)
                      +.+|+|.|.|.+ .+..+.. .......|.|..    +|.+.. ++...+.+|+.++|.|.+.|. |.+ .+.|++++..
T Consensus        86 ~~~D~G~Y~C~~-~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  164 (215)
T 1c5d_H           86 QTEDTAIYFCTR-EDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALS  164 (215)
T ss_dssp             CGGGCEEEEEEE-CCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred             CcccCEEEEEEE-ecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence            999999999999 6653111 122335666663    354442 223345689999999999876 877 8999998865


Q ss_pred             eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        246 YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +..........  .......+.|+  ....+| |.|+|.|.|..|.
T Consensus       165 ~~~~~~~~~~~--~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~  205 (215)
T 1c5d_H          165 SDVHTFPAVLQ--SGLYTLTSSVT--SSTWPS-QTVTCNVAHPASS  205 (215)
T ss_dssp             CSCCBCCCEEE--TTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGT
T ss_pred             CceEecCcccC--CCCEEEEEEEe--cccCCC-CeEEEEEEeCCCC
Confidence            32111100000  00000123344  444456 9999999999965

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.73  E-value=2.8e-16  Score=123.05  Aligned_cols=169  Identities=12%  Similarity=0.171  Sum_probs=100.6

Q ss_pred             eceEEecCCcEEEEEEec--c-----CceEEEEEcCccceeec------------cCcceEEEee-eeCCeEEEEEeecc
Q psy15235         29 GDTEIMEGAPINISCILT--I-----FEQVKWQLNGRNINQSS------------VDSGFAATAN-LTEDNFKYSIHEAI   88 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~--~-----~~~v~W~~~g~~~~~~~------------~~~~~~~~~~-~~~~~~~l~i~~~~   88 (323)
                      .++.+.+|++++|.|.+.  +     ...+.|+|++..+....            ...+..+..+ ...++..|.|.+++
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   88 (222)
T 3sbw_C            9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK   88 (222)
T ss_dssp             SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC
T ss_pred             ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc
Confidence            456789999999999953  3     23899999764332210            0011111100 12356678888776


Q ss_pred             c--CcceEEEeeccCCccceeeeeee-----CCce---eEEecCCcEEEEEEeecCCCCCCceEEEEEC-Ceeccccccc
Q psy15235         89 L--ESGYVQSSLFIPRMNAITGNYDI-----EPKY---KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATEL  157 (323)
Q Consensus        89 ~--~G~Y~C~~~~~~~~~~~~~~~~~-----~~~~---~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~  157 (323)
                      .  +|.|+|.+.+ .+.......+.+     .+..   ..+..|+.++|.|.+.+.|   .+.+.|+++ +..+..    
T Consensus        89 ~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P---~p~i~W~~~~g~~~~~----  160 (222)
T 3sbw_C           89 LQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYP---KAEVIWTSSDHQVLSG----  160 (222)
T ss_dssp             GGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBS---CCEEEEEETTCCEECC----
T ss_pred             cccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCC---CCeEEEEECCCceecC----
Confidence            5  9999999987 333322222322     1111   1356799999999999977   789999998 555443    


Q ss_pred             cCcE--E-eceeE---EEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecce
Q psy15235        158 SGRL--T-QSKDS---ITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT  208 (323)
Q Consensus       158 ~~~~--~-~~~~~---l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~  208 (323)
                      ....  . .....   ..+..+..+|.|.|+|.| .|..+  .....+.|.|..+|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a-~n~~g--~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          161 KTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTF-RRLDP--EENHTAELVIPELPL  214 (222)
T ss_dssp             EEEEEECC----CEEEEEEEEEECCTTCEEEEEE-EETTT--TEEEEEEEECCCC--
T ss_pred             ccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEE-EeCcc--ceeeEEEEEecCCcc
Confidence            1111  1 11111   222245678999999999 77743  345556666655554

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=2.3e-16  Score=126.54  Aligned_cols=163  Identities=13%  Similarity=0.218  Sum_probs=105.0

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee-------------ccCcceEEEeeeeCCeEEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS-------------SVDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~-------------~~~~~~~~~~~~~~~~~~l~   83 (323)
                      ..+..+.++.+.+|++|+|.|.+.+    .+.+.|+|+  +..+...             ....+..+..+...+...|.
T Consensus         2 v~~~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   81 (257)
T 1f3r_B            2 VQLLESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLK   81 (257)
T ss_dssp             CEEEEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEE
T ss_pred             ceEECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEE
Confidence            3566777788999999999999542    578999996  3222110             01122222222235567788


Q ss_pred             Eeecc--cCcceEEEeeccCC-------c----c--ceeeee-----------------ee--CCceeEEecCCcEEEEE
Q psy15235         84 IHEAI--LESGYVQSSLFIPR-------M----N--AITGNY-----------------DI--EPKYKVFEYRVPFTLKC  129 (323)
Q Consensus        84 i~~~~--~~G~Y~C~~~~~~~-------~----~--~~~~~~-----------------~~--~~~~~~~~~g~~v~l~C  129 (323)
                      |.+++  |+|.|+|.+.+..+       .    .  .+.+..                 .+  .+....+.+|++++|.|
T Consensus        82 I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C  161 (257)
T 1f3r_B           82 MNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSC  161 (257)
T ss_dssp             EESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEE
T ss_pred             ECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEE
Confidence            88776  49999999987632       1    0  111110                 01  22233467899999999


Q ss_pred             EeecCCCCCCceEEEEE--CCeecccc--------ccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        130 NVTSPPPGDDYQIVWYK--GNKSITEA--------TELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       130 ~~~~~~~~~~~~i~W~~--~~~~~~~~--------~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+.+.+   .+.+.|+|  ++..+...        .....++.    .....|.|.+++.+|+|.|+|.+ .|.
T Consensus       162 ~~~~~~---~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~  231 (257)
T 1f3r_B          162 KGSQNI---NNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQ-YNN  231 (257)
T ss_dssp             ECSSCC---BTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEE-ESS
T ss_pred             EECCcC---CCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEE-eCC
Confidence            999887   57999999  55433110        01123443    34568999999999999999999 665

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.72  E-value=1.1e-16  Score=124.41  Aligned_cols=159  Identities=16%  Similarity=0.213  Sum_probs=101.2

Q ss_pred             eeceEEecCCcEEEEEEeccCceEEEEEc--CccceeeccC-------cceEEEeeeeCCeEEEEEeeccc--CcceEEE
Q psy15235         28 FGDTEIMEGAPINISCILTIFEQVKWQLN--GRNINQSSVD-------SGFAATANLTEDNFKYSIHEAIL--ESGYVQS   96 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~~~~~v~W~~~--g~~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~   96 (323)
                      +..+.+.+|++|+|.|.+.+.+.+.|+|+  +..+......       ....+..........|.|.+++.  +|.|+|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            7 PPSASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             CSEEEECTTCEEEEEEECCCSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             CceEEEcCCCCEEEEEEECCCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            34678999999999999667789999994  3332211000       00112222345667788877654  9999999


Q ss_pred             eeccCC--cc--ceeeeee----eCCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-----
Q psy15235         97 SLFIPR--MN--AITGNYD----IEPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-----  157 (323)
Q Consensus        97 ~~~~~~--~~--~~~~~~~----~~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-----  157 (323)
                      +.+..+  ..  .....+.    ..|.+...      ..|+.++|.|.+.+.+|. .+.+.|+++|..+......     
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~  165 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPG-AVTVAWKADSSPVKAGVETTTPSK  165 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEECCCEE
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCC-CeEEEEEECCeecCCCcccCCceE
Confidence            988655  11  1111111    12222221      259999999999885432 4799999999887541111     


Q ss_pred             --cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        158 --SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       158 --~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                        +..+ .....|.|.++..+|+|.|+|.+ .|.
T Consensus       166 ~~~~~~-~~~s~L~i~~~~~~d~g~Y~C~v-~~~  197 (211)
T 3tv3_L          166 QSNNKY-AASSYLSLTPEQWKSHRSYSCQV-THE  197 (211)
T ss_dssp             CTTSSE-EEEEEEEECHHHHHHSSCEEEEE-EET
T ss_pred             CCCCCE-EEEEEEEEcHHHhCCCCeEEEEE-EEC
Confidence              1111 22356889888888999999999 666

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.72  E-value=5e-16  Score=124.24  Aligned_cols=176  Identities=14%  Similarity=0.200  Sum_probs=109.5

Q ss_pred             EEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee--------------ccCcceEEEeeeeCCeEEEEE
Q psy15235         25 ITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS--------------SVDSGFAATANLTEDNFKYSI   84 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~--------------~~~~~~~~~~~~~~~~~~l~i   84 (323)
                      +..+.++.+.+|++|+|.|.+.+    .+.+.|+|.  +..+...              ....+.....+.....+.|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   84 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL   84 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence            34567788999999999999543    579999993  2222111              011223333333345677888


Q ss_pred             eeccc--CcceEEEeeccCCcc-----ceee-------------------eeeeCCceeEEecCCcEEEEEEeecCCCCC
Q psy15235         85 HEAIL--ESGYVQSSLFIPRMN-----AITG-------------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGD  138 (323)
Q Consensus        85 ~~~~~--~G~Y~C~~~~~~~~~-----~~~~-------------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~  138 (323)
                      .+++.  +|.|+|.+.+.....     .+.+                   .+...+....+.+|++++|.|.+.+.+   
T Consensus        85 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~---  161 (253)
T 3uzq_A           85 SSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENV---  161 (253)
T ss_dssp             CSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCC---
T ss_pred             CCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcc---
Confidence            87754  999999998743221     1111                   111234445678899999999999876   


Q ss_pred             Cc----eEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeee
Q psy15235        139 DY----QIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQAD  200 (323)
Q Consensus       139 ~~----~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~  200 (323)
                      .+    .+.|+|+  +.....        ......++.    .....|.|.+++.+|+|.|.|.+ .+.... ....-..
T Consensus       162 ~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-~n~~~~-~fg~gt~  239 (253)
T 3uzq_A          162 DRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQR-SNEVPW-TFGGGTK  239 (253)
T ss_dssp             EETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE-CSSSSC-CBCCCEE
T ss_pred             ccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEE-ccCCCc-EECCCEE
Confidence            44    8999984  222110        001123443    33557999999999999999999 665322 2223334


Q ss_pred             eEEEe
Q psy15235        201 FDVIM  205 (323)
Q Consensus       201 l~v~~  205 (323)
                      |.|..
T Consensus       240 l~v~~  244 (253)
T 3uzq_A          240 LEIKR  244 (253)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            55544

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.72  E-value=4.8e-17  Score=130.02  Aligned_cols=171  Identities=19%  Similarity=0.262  Sum_probs=95.7

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc----c---------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT----E---------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~----~---------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ....+.+|++++|.|.+.+.++. .+.+.|||..  ....    .         ...+.+|+.      .....|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (257)
T 3bn9_D            8 GGGLVKPGGSLRLSCAASGFTFS-SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL   86 (257)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGG-GCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred             CCEEEcCCCcEEEEEEeccccCC-CceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence            34568899999999999875421 3689999853  2110    0         012345655      13468999999


Q ss_pred             ecCCCeeEEEEEEcCCCCC---------C--CCceeeeeEEEe----cceeee-eceeEEeeCCeEEEEEEEecC-CCC-
Q psy15235        174 TVDDAGQYSCRLIDPKSTN---------T--TPLAQADFDVIM----KPTAKL-VETLTVIEGEKLRLECLVVGS-PPP-  235 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~---------~--~~~~~~~l~v~~----~p~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-  235 (323)
                      +.+|+|.|.|.+ .+..+.         .  .......|.|..    +|.+.. .+...+.+|+.++|.|.+.|. |.+ 
T Consensus        87 ~~~DsG~Y~C~~-~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi  165 (257)
T 3bn9_D           87 RAEDTAVYYCAR-PYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV  165 (257)
T ss_dssp             CGGGCEEEEEEE-ECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCC
T ss_pred             ChhhCEEEEEEE-ecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCc
Confidence            999999999999 655320         0  111234666654    355542 223345689999999999875 777 


Q ss_pred             cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        236 TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       236 ~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.|++++..+..........  .++ ....+.|+|.++..+| |.|+|.|.|...
T Consensus       166 ~v~W~k~g~~~~~~~~~~~~~--~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~  218 (257)
T 3bn9_D          166 TVSWNSGALTSGVHTFPAVLQ--SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  218 (257)
T ss_dssp             EEEETTTTCCSSCEECCCEEC--TTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred             EEEEeeCCCcCCcEecCCeEc--CCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence            899999987532110000000  111 1134678888888878 999999999773

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.72  E-value=6.9e-16  Score=122.22  Aligned_cols=159  Identities=17%  Similarity=0.265  Sum_probs=99.8

Q ss_pred             EEeeceEEecCCcEEEEEE-eccCceEEEEEc--Ccccee------------eccCcceEEEeeeeCCeEEEEEeecc--
Q psy15235         26 TYFGDTEIMEGAPINISCI-LTIFEQVKWQLN--GRNINQ------------SSVDSGFAATANLTEDNFKYSIHEAI--   88 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~-~~~~~~v~W~~~--g~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~--   88 (323)
                      ..+..+.+.+|++|+|.|. ..+.+.+.|+|+  +..+..            .....+..+.. .......|.|.+++  
T Consensus         5 q~p~~~~v~~G~~v~L~C~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~   83 (238)
T 2p1y_A            5 QSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILELATPS   83 (238)
T ss_dssp             EECSEEEEETTCCEEEEEEECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESSCCGG
T ss_pred             ECccceEEeCCCEEEEEeecCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEecCCcc
Confidence            3466788999999999999 446689999995  222111            00111221111 22345567777765  


Q ss_pred             cCcceEEEeeccCCc---------cceee----------------eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEE
Q psy15235         89 LESGYVQSSLFIPRM---------NAITG----------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIV  143 (323)
Q Consensus        89 ~~G~Y~C~~~~~~~~---------~~~~~----------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~  143 (323)
                      |+|.|+|.+.+..+.         ..+.+                .+...+....+.+|++++|.|.+.+.+   .+.+.
T Consensus        84 DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p---~~~i~  160 (238)
T 2p1y_A           84 QTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSA---FDYFP  160 (238)
T ss_dssp             GCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTT---CCEEE
T ss_pred             cCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCC---CCcEE
Confidence            499999999876421         11111                111124444578999999999999887   67999


Q ss_pred             EEECCe--e---ccc-----cccccCcEEe------ceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        144 WYKGNK--S---ITE-----ATELSGRLTQ------SKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       144 W~~~~~--~---~~~-----~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |+|++.  .   +..     ......++..      ....|.|.+++.+|+|.|+|.+ .|.
T Consensus       161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~  221 (238)
T 2p1y_A          161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAA-IDT  221 (238)
T ss_dssp             EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEE-EET
T ss_pred             EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEE-eeC
Confidence            999641  1   100     0011334431      2468999999999999999999 554

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.72  E-value=1.2e-16  Score=126.20  Aligned_cols=182  Identities=19%  Similarity=0.251  Sum_probs=105.8

Q ss_pred             eeEEecCCcEEEEEEeecCCCC-CCceEEEEECC--ee---cc----c--------cccccCcEE------eceeEEEEe
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYKGN--KS---IT----E--------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~--~~---~~----~--------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ...+.+|++++|.|.+.+.+.. ....|.||+..  ..   +.    .        ...+.+|+.      .....|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   88 (232)
T 3qhz_H            9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMT   88 (232)
T ss_dssp             CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEEC
Confidence            3567889999999999764210 02345999832  11   10    0        012234554      234579999


Q ss_pred             eeecCCCeeEEEEEEcCCCCC------CCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecCCC--CcEE
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTN------TTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGSPP--PTVE  238 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~------~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~--~~~~  238 (323)
                      +++.+|+|.|.|.+ .+..+.      ........+.|.    .+|.+. ..+...+..|+.++|.|.+.+.++  ..+.
T Consensus        89 ~v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~  167 (232)
T 3qhz_H           89 NMDPVDTATYYCAR-TLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  167 (232)
T ss_dssp             SCCGGGCEEEEEEE-ECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEE
T ss_pred             cCChhhCEEEEEEE-eeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEE
Confidence            99999999999999 543100      112223345554    245554 344445667999999999987533  3588


Q ss_pred             EEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        239 WRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |++++..+.......... ........+.|+|.....+| |.|+|.|.|..+.    ......|.+
T Consensus       168 W~~~g~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~----~~~~~~l~~  227 (232)
T 3qhz_H          168 WNSGALTSGVHTFPAVLQ-SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKRVEP  227 (232)
T ss_dssp             EGGGTBCTTEEECCCEEC-TTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT----EEEEEECCC
T ss_pred             EEECCEecceeeccceeC-CCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCC----ccEEEEeCC
Confidence            999886431110000000 00011134679999999889 9999999999855    555555443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.72  E-value=6.7e-17  Score=110.83  Aligned_cols=94  Identities=29%  Similarity=0.497  Sum_probs=74.6

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.+. .+.+..+.+|+.+.|.|.+.|+|.|.+.|++||..+..+ .++.+..  ++  ...+|.|.+++.+|+|.|+|.
T Consensus        13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~   87 (107)
T 3knb_B           13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-ERLSFPA--DG--AEHGLLLTAALPTDAGVYVCR   87 (107)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEECCE--ET--TEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccce-eeEEEee--cC--ceEEEEEecCChhhCEEEEEE
Confidence            34433 455678899999999999999999999999999988654 4444431  11  356899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEccee
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      |.|..|.    ....+.|.|.++|
T Consensus        88 a~N~~G~----~~~~~~l~V~~pP  107 (107)
T 3knb_B           88 ARNAAGE----AYAAAAVTVLEPP  107 (107)
T ss_dssp             EEETTEE----EEEEEEEEEEC--
T ss_pred             EEECCCE----EEEEEEEEEEcCC
Confidence            9999976    7888889888765

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.72  E-value=7.7e-17  Score=109.16  Aligned_cols=93  Identities=24%  Similarity=0.449  Sum_probs=74.5

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      +|.+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++|+..+.... .++.+..  .+  ...+|.|.+++.+|+|.|+|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C   80 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN--TD--DLTTLIIMDVQKQDGGLYTL   80 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEE--CS--SEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeec--cc--ceEEEEEcCCCccCCEEEEE
Confidence            45444 4556788999999999999999999999999999886533 3454442  11  35789999999999999999


Q ss_pred             EEeecccCCCCCceeEEEEEEcc
Q psy15235        284 HGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       284 ~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      .|.|..|.    ....+.|.|++
T Consensus        81 ~a~N~~G~----~~~~~~l~V~~   99 (100)
T 3knb_A           81 SLGNEFGS----DSATVNIHIRS   99 (100)
T ss_dssp             EEEETTEE----EEEEEEEEEEC
T ss_pred             EEEECCCE----EEEEEEEEEEE
Confidence            99999966    78888888864

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.72  E-value=7.7e-16  Score=120.08  Aligned_cols=161  Identities=12%  Similarity=0.131  Sum_probs=100.4

Q ss_pred             EeeceEEecCCcEEEEEE-ecc---CceEEEEEcC--ccceeec-------cCcceEEEeeeeCCeEEEEEeeccc--Cc
Q psy15235         27 YFGDTEIMEGAPINISCI-LTI---FEQVKWQLNG--RNINQSS-------VDSGFAATANLTEDNFKYSIHEAIL--ES   91 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~-~~~---~~~v~W~~~g--~~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~--~G   91 (323)
                      .|.++.+.+|++|+|.|. ...   .+.+.|+|++  ..+....       ......+......+...|.|.+++.  +|
T Consensus         6 qp~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            6 QPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence            466688999999999999 332   4689999954  2221100       0001112223345667788887754  99


Q ss_pred             ceEEEeeccCC-c---cceeeeee---eCCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeecccc-ccc
Q psy15235         92 GYVQSSLFIPR-M---NAITGNYD---IEPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA-TEL  157 (323)
Q Consensus        92 ~Y~C~~~~~~~-~---~~~~~~~~---~~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~-~~~  157 (323)
                      .|+|.+.+..+ .   ......+.   ..|.+...      ..|+.++|.|.+.+.+|. ...|.|+++|..+... ...
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W~k~g~~~~~~~~~~  164 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPR-EAKVQWKVDNALQSGNSQES  164 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS-CCEEEEEETTEECCSSEEEE
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCC-ceEEEEEECCeecCCCeeEe
Confidence            99999988654 1   11111111   12333222      248899999999985431 2499999999987652 000


Q ss_pred             -------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        158 -------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       158 -------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                             ++.+ .....|.|..+..+|+|.|+|.| .|..
T Consensus       165 ~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~Y~C~a-~n~~  202 (216)
T 2xzc_L          165 VTEQDSKDSTY-SLSSTLTLSKADYEKHKVYACEV-THQG  202 (216)
T ss_dssp             ECCCCTTTCCE-EEEEEEEEEHHHHTTCCEEEEEE-ECTT
T ss_pred             cCcccCCCCCE-EEEEEEEECHHHhCCCCcEEEEE-EcCC
Confidence                   0111 12347899999999999999999 6763

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.72  E-value=1.9e-16  Score=123.09  Aligned_cols=162  Identities=15%  Similarity=0.198  Sum_probs=102.3

Q ss_pred             eEEEeeceEEecCCcEEEEEEec--c---CceEEEEEcC--ccceee---------ccCcceEEEeeeeCCeEEEEEeec
Q psy15235         24 KITYFGDTEIMEGAPINISCILT--I---FEQVKWQLNG--RNINQS---------SVDSGFAATANLTEDNFKYSIHEA   87 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~--~---~~~v~W~~~g--~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~   87 (323)
                      .+..+.++.+.+|++|+|.|.+.  +   .+.+.|+|++  ..+...         ....+  +......+...|.|.++
T Consensus         3 ~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v   80 (212)
T 1q0x_L            3 VVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPAR--FSGSLIGDKAALTITGA   80 (212)
T ss_dssp             CEEECSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTT--EEEEEETTEEEEEESSC
T ss_pred             eEECCCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCccccc--EEEEeeCCEEEEEECCC
Confidence            34457778899999999999954  3   3689999963  332110         01112  22233456677888877


Q ss_pred             cc--CcceEEEeeccCCcc---ceeeeee----eCCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeecc
Q psy15235         88 IL--ESGYVQSSLFIPRMN---AITGNYD----IEPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT  152 (323)
Q Consensus        88 ~~--~G~Y~C~~~~~~~~~---~~~~~~~----~~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~  152 (323)
                      +.  +|.|+|.+.+..+..   .....+.    ..|.+..      ...|+.++|.|.+.+.+|. ...|.|+++|..+.
T Consensus        81 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~l~  159 (212)
T 1q0x_L           81 QTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPG-VVTVDWKVDGTPVT  159 (212)
T ss_dssp             CGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS-CCEEEEEETTEEEC
T ss_pred             CccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCC-CeEEEEEECCEeCC
Confidence            54  999999998765321   1111111    1233322      1258899999999886541 24999999998876


Q ss_pred             ccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        153 EATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       153 ~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..........      .....|.|.....+|+|.|+|.| .|.
T Consensus       160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a-~n~  201 (212)
T 1q0x_L          160 AGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQV-THE  201 (212)
T ss_dssp             TTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEE-EET
T ss_pred             CCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEE-EeC
Confidence            5211011111      22346889998899999999999 665

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.71  E-value=3.4e-15  Score=115.31  Aligned_cols=230  Identities=17%  Similarity=0.283  Sum_probs=146.4

Q ss_pred             eeceEEecCCcEEEEEEe---cc---CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccC
Q psy15235         28 FGDTEIMEGAPINISCIL---TI---FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIP  101 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~---~~---~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~  101 (323)
                      |.-..+..|+.++|+|.+   .|   +..++|+|+|..+...             ...+.+......++|.|+|.+++..
T Consensus         9 P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-------------T~tLti~s~t~sdSG~YqCvVTDa~   75 (304)
T 3shs_A            9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------------TATLTVADATSENAGSYKVTVQDTD   75 (304)
T ss_dssp             ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-------------SSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-------------cceEEeeeccccCCeEEEEEEEECC
Confidence            455678999999999993   23   3489999999776543             2333333334455999999998765


Q ss_pred             Ccccee----------eeeee-CCceeEEecCCcEEEEEEe--ecCC-CCC--CceEEEEECCeeccccccccCcEEece
Q psy15235        102 RMNAIT----------GNYDI-EPKYKVFEYRVPFTLKCNV--TSPP-PGD--DYQIVWYKGNKSITEATELSGRLTQSK  165 (323)
Q Consensus       102 ~~~~~~----------~~~~~-~~~~~~~~~g~~v~l~C~~--~~~~-~~~--~~~i~W~~~~~~~~~~~~~~~~~~~~~  165 (323)
                      +.....          +.+.+ .|.......|..+.|.+.+  .+.. |..  ..+++|++++..+..           .
T Consensus        76 Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg-----------A  144 (304)
T 3shs_A           76 TMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-----------T  144 (304)
T ss_dssp             TCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES-----------S
T ss_pred             CCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC-----------c
Confidence            543111          11222 3444445678899999887  5433 211  369999999988754           3


Q ss_pred             eEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecce-eeeeceeEEeeCCeEEEEEEEe----c----CCCC-
Q psy15235        166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPT-AKLVETLTVIEGEKLRLECLVV----G----SPPP-  235 (323)
Q Consensus       166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~g~~~~l~C~~~----g----~p~~-  235 (323)
                      ..+++......++|.|+|++ .+..+....+....+.+...+. .....+..+..|+.+.|.-.+.    |    .|.. 
T Consensus       145 q~lT~sS~TateaG~YtV~V-Tn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (304)
T 3shs_A          145 QDITIQEFTADKNGVYTVKV-WGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLT  223 (304)
T ss_dssp             SEEEECSCCGGGCEEEEEEE-ESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEE
T ss_pred             cccceeeEEecCCeEEEEEE-EcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceE
Confidence            46777778888999999999 6664444455555555544332 2234456788899888877663    2    2333 


Q ss_pred             -cEEEEE--CCee---eec-----cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        236 -TVEWRI--GNDT---YFR-----SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       236 -~~~W~~--~~~~---~~~-----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                       .+.||.  .|+.   +..     .-..+.+.       ....|.-.....+|...|.|.+.--.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (304)
T 3shs_A          224 IKYNWYLQREGQLSPTLIGSEVGEALEGFSIT-------PDGHLFKESATYDDTAKFWCVAKLYQ  281 (304)
T ss_dssp             EEEEEEEECTTCCSCEEEESSSEECGGGEEEC-------TTSCEEESSCCGGGCEEEEEEEEEEE
T ss_pred             EEEEEEEeecCccCchhhhhhhhhhhccceeC-------CCcceeecccccccchheeeHHHHHH
Confidence             478875  2321   111     11223333       35667777788899999999998544

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.71  E-value=2.9e-16  Score=125.72  Aligned_cols=161  Identities=14%  Similarity=0.173  Sum_probs=102.2

Q ss_pred             EEEeeceEEecCCcEEEEEEec--c-----CceEEEEEcC--cccee---------eccCcceEEEeeeeCCeEEEEEee
Q psy15235         25 ITYFGDTEIMEGAPINISCILT--I-----FEQVKWQLNG--RNINQ---------SSVDSGFAATANLTEDNFKYSIHE   86 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~--~-----~~~v~W~~~g--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~   86 (323)
                      ...+..+.+.+|++++|.|.+.  +     .+.+.|+|++  ..+..         .....+  +..........|.|.+
T Consensus        42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~  119 (254)
T 2c1o_A           42 TQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDR--FTGSGSGTDFTLKISR  119 (254)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTT--EEEEEETTEEEEEESS
T ss_pred             EeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccce--EEEecCCCEEEEEECc
Confidence            3446778899999999999954  3     2789999843  33321         001111  2223345667788887


Q ss_pred             ccc--CcceEEEeeccCCccc---eeeeeee---CCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeecc
Q psy15235         87 AIL--ESGYVQSSLFIPRMNA---ITGNYDI---EPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT  152 (323)
Q Consensus        87 ~~~--~G~Y~C~~~~~~~~~~---~~~~~~~---~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~  152 (323)
                      ++.  +|.|+|.+.+......   ....+..   .|.+...      ..|+.++|.|.+.+.+|. .+.+.|+++|..+.
T Consensus       120 v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~  198 (254)
T 2c1o_A          120 VEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK-DINVKWKIDGSERQ  198 (254)
T ss_dssp             CCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS-CCEEEEEESSSEEC
T ss_pred             CCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCC-CcEEEEEECCCccc
Confidence            754  9999999987643211   0111111   2333221      247899999999885432 35799999998876


Q ss_pred             cc-cc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        153 EA-TE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       153 ~~-~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .. ..       .++.+ .....|.|.++..+|+|.|+|.| .|..
T Consensus       199 ~~~~~~~~~~~~~~g~~-~~~~~L~i~~~~~~d~G~Y~C~a-~n~~  242 (254)
T 2c1o_A          199 NGVLNSWTDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THKT  242 (254)
T ss_dssp             TTEEEEECCCCTTTCCE-EEEEEEEEEHHHHHTCCEEEEEE-ECTT
T ss_pred             CcceeccccccCCCCcE-EEEEEEEeccccccCCCeEEEEE-EcCC
Confidence            52 00       01111 12468999999999999999999 7763

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.71  E-value=9.9e-17  Score=125.67  Aligned_cols=173  Identities=15%  Similarity=0.228  Sum_probs=100.8

Q ss_pred             eceEEecCCcEEEEEEeccC-------ceEEEEEcCccceeeccCcceE--------EEee---eeCCeEEEEEeecc--
Q psy15235         29 GDTEIMEGAPINISCILTIF-------EQVKWQLNGRNINQSSVDSGFA--------ATAN---LTEDNFKYSIHEAI--   88 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~~~-------~~v~W~~~g~~~~~~~~~~~~~--------~~~~---~~~~~~~l~i~~~~--   88 (323)
                      .++.+.+|++++|.|.+.+.       +.+.|++++..........+..        ....   ...++..|.|.+++  
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            45678999999999995432       6899999875542211111110        0010   01234556666655  


Q ss_pred             cCcceEEEeeccCCcc-c--ee-------eeeeeCCceeEEecCCcEEEEEEe-ecCCCCCCceEEEEE-CCeecccccc
Q psy15235         89 LESGYVQSSLFIPRMN-A--IT-------GNYDIEPKYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYK-GNKSITEATE  156 (323)
Q Consensus        89 ~~G~Y~C~~~~~~~~~-~--~~-------~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~-~~~~~~~~~~  156 (323)
                      |+|.|+|.+.+..... .  +.       +.+...+ ...+..|+.++|.|.+ .+.|   .+.+.|++ ++..+.....
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P---~~~v~W~~~~~~~~~~~~~  158 (222)
T 4i0k_A           83 DEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYP---EAEVFWKDGQGVPLTGNVT  158 (222)
T ss_dssp             GCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBS---CCEEEEECTTSCBCCSEEE
T ss_pred             cCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccC---CCeEEEEcCCCccCCCCcc
Confidence            4999999998653221 1  11       1222222 1235679999999999 6666   68999999 4555433000


Q ss_pred             ccCcEE---eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEeccee
Q psy15235        157 LSGRLT---QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTA  209 (323)
Q Consensus       157 ~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~  209 (323)
                       .....   .....|.|.++..+|+|.|+|.+ .|..+  .....+.|.|..+|..
T Consensus       159 -~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a-~n~~g--~~~~~~~l~V~~~p~~  210 (222)
T 4i0k_A          159 -TSQMANERGLFDVHSVLRVVLGANGTYSCLV-RNPVL--QQDAHGSVTITGQPLT  210 (222)
T ss_dssp             -EEEEECTTSCEEEEEEEEEECCTTCEEEEEE-EETTT--TEEEEEEEECCC----
T ss_pred             -eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEE-ECCCC--CCceEEEEEEeCCccc
Confidence             00111   11234789999999999999999 77743  3566667777666644

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.71  E-value=1.8e-16  Score=125.66  Aligned_cols=184  Identities=19%  Similarity=0.228  Sum_probs=109.5

Q ss_pred             CceeEEecCCcEEEEEEeecCCCC-CCceEEEEECC--ee---c---c------c------cccccCcEE------ecee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYKGN--KS---I---T------E------ATELSGRLT------QSKD  166 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~--~~---~---~------~------~~~~~~~~~------~~~~  166 (323)
                      +....+.+|++++|.|.+.+.+.. ....+.||+..  ..   +   .      .      .....+|+.      ....
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   86 (239)
T 3tv3_H            7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV   86 (239)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence            344568889999999999875411 02489999832  11   1   0      0      012245554      2345


Q ss_pred             EEEEeeeecCCCeeEEEEEEcCCCC-----------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEe
Q psy15235        167 SITIRKTTVDDAGQYSCRLIDPKST-----------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVV  230 (323)
Q Consensus       167 ~l~i~~~~~~d~G~y~C~~~~~~~~-----------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~  230 (323)
                      .|.|.+++.+|+|.|.|.+ .+..+           .........+.|.    .+|.+. .++...+..|+.+.|.|.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~-~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~  165 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCAR-FGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  165 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEE-EEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEE-ecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEe
Confidence            6999999999999999999 43310           0011122345553    244444 33344456799999999997


Q ss_pred             c-CCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        231 G-SPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       231 g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      + .|++ .+.|++++..+........ ..........+.|+|.....+| |.|+|.|.|..+.    ......|.+
T Consensus       166 ~~~p~~~~v~W~~~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~----~~~~~~l~~  235 (239)
T 3tv3_H          166 DYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKRVEP  235 (239)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEECCCE-ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT----EEEEEECCC
T ss_pred             eEeCCCeEEEEEECCccCceEecCce-ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCC----ceEEEEecc
Confidence            7 4544 5899998864321110000 1000011234679999998888 9999999999855    444444433

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.71  E-value=1.7e-16  Score=123.57  Aligned_cols=159  Identities=12%  Similarity=0.170  Sum_probs=99.3

Q ss_pred             eeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceeecc-------CcceEEEeeeeCCeEEEEEeeccc--CcceE
Q psy15235         28 FGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQSSV-------DSGFAATANLTEDNFKYSIHEAIL--ESGYV   94 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~   94 (323)
                      +..+.+.+|++|+|.|.+.  +.+.+.|+|.+  ........       .....+......+...|.|.+++.  +|.|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence            6678899999999999954  46799999843  21111000       001112222445677888888764  99999


Q ss_pred             EEeeccCCcc---ceeeeee---eCCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc-c-----
Q psy15235         95 QSSLFIPRMN---AITGNYD---IEPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT-E-----  156 (323)
Q Consensus        95 C~~~~~~~~~---~~~~~~~---~~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~-~-----  156 (323)
                      |.+.+..+..   .....+.   ..|.+..      ...|+.++|.|.+.+.+|. .+.+.|+++|..+.... .     
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~-~~~v~W~k~g~~l~~~~~~~~~~~  166 (213)
T 3r06_A           88 CQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPK-DINVKWKVDGSEKRDGVLQSVTDQ  166 (213)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS-CEEEEEEETTEEECTTEEEEECCC
T ss_pred             EecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCC-ceEEEEEECCcccCCceEeccCce
Confidence            9998754221   1111111   1222222      2347789999999886532 36999999998876411 0     


Q ss_pred             --ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        157 --LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       157 --~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                        .++.+ .....|.|.....+|+|.|+|.+ .|.
T Consensus       167 ~~~~g~~-~~~s~l~i~~~~~~d~g~YtC~v-~n~  199 (213)
T 3r06_A          167 DSKDSTY-SLSSTLSLTKADYERHNLYTCEV-THK  199 (213)
T ss_dssp             CTTTCCE-EEEEEEEEEHHHHHTCCEEEEEE-EET
T ss_pred             eCCCCcE-EEEEEEEeCHHHhccCCeEEEEE-Eec
Confidence              00111 22346778888888999999999 666

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.71  E-value=1.1e-15  Score=122.58  Aligned_cols=165  Identities=16%  Similarity=0.231  Sum_probs=105.6

Q ss_pred             CCceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee-------------ccCcceEEEeeeeCCeEE
Q psy15235         21 ADGKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS-------------SVDSGFAATANLTEDNFK   81 (323)
Q Consensus        21 ~~~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~-------------~~~~~~~~~~~~~~~~~~   81 (323)
                      ....+..+.+..+.+|++|+|.|.+.+    .+.+.|+|..  ......             ....+..+..+.......
T Consensus         8 ~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   87 (257)
T 3gkz_A            8 KEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVY   87 (257)
T ss_dssp             -CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred             ccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEE
Confidence            344566777888999999999999543    5799999943  221111             011222233333355667


Q ss_pred             EEEeecc--cCcceEEEeeccCCc--------ccee------------------eeeeeCCceeEEecCCcEEEEEEeec
Q psy15235         82 YSIHEAI--LESGYVQSSLFIPRM--------NAIT------------------GNYDIEPKYKVFEYRVPFTLKCNVTS  133 (323)
Q Consensus        82 l~i~~~~--~~G~Y~C~~~~~~~~--------~~~~------------------~~~~~~~~~~~~~~g~~v~l~C~~~~  133 (323)
                      |.|.+++  |+|.|+|.+.+....        ..+.                  +.+...+....+.+|++++|.|.+.+
T Consensus        88 L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  167 (257)
T 3gkz_A           88 LQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASS  167 (257)
T ss_dssp             EEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESS
T ss_pred             EEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEcc
Confidence            8888776  499999999875211        1111                  11112344456889999999999998


Q ss_pred             CCCCCCc-eEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        134 PPPGDDY-QIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       134 ~~~~~~~-~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+   .+ .+.|+|.  +.....        ......++.    .....|.|.+++.+|+|.|.|.+ .+.
T Consensus       168 ~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~-~~~  234 (257)
T 3gkz_A          168 SV---SSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQ-WSS  234 (257)
T ss_dssp             CC---CGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE-CSS
T ss_pred             Cc---cceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEE-ccC
Confidence            76   45 9999983  322211        011124443    24567999999999999999999 554

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.71  E-value=3.3e-17  Score=136.00  Aligned_cols=161  Identities=15%  Similarity=0.253  Sum_probs=100.7

Q ss_pred             CcEEEEEEeecCCCCCCceEEEEECCeeccccccc------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCc
Q psy15235        123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPL  196 (323)
Q Consensus       123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  196 (323)
                      ++++|.|.+.+..|. .+.|+|+++|..+......      ++.+ .....|.|.+...+|+|.|+|.| .+..+.    
T Consensus        25 ~~v~L~C~~~g~~P~-~~~v~W~k~g~~l~~~~~~~~~~~~~g~~-~~~s~l~i~~~~~~d~g~Y~C~a-~n~~~~----   97 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPG-TIQITWLEDGQVMDVDLSTASTTQEGELA-STQSELTLSQKHWLSDRTYTCQV-TYQGHT----   97 (323)
T ss_dssp             SEEEEEEEEEEECCC-CEEEEEEETTEECCGGGEEEEEEEETTEE-EEEEEEEEEHHHHHTTCCEEEEE-EETTEE----
T ss_pred             CcEEEEEEEeCeECC-CeEEEEEECCEEcccceecCCcCccCCcE-EEEEEEEEcHHHcCCCCcEEEEE-EeCCCC----
Confidence            699999999886432 4799999999887642110      1111 12245777777778999999999 665221    


Q ss_pred             eeeeeEE-----Eecceee--eeceeEEeeCCeEEEEEEEecC-CCC---cEEEEECCeeeeccCCeeeeecCCCCCCcc
Q psy15235        197 AQADFDV-----IMKPTAK--LVETLTVIEGEKLRLECLVVGS-PPP---TVEWRIGNDTYFRSQGRIKLSEHPEKGTAN  265 (323)
Q Consensus       197 ~~~~l~v-----~~~p~~~--~~~~~~~~~g~~~~l~C~~~g~-p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (323)
                      ....+.+     ...|.+.  .+....+.+|+.+.|.|.+.|. |.+   .+.|++++......................
T Consensus        98 ~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~  177 (323)
T 2wqr_A           98 FEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVT  177 (323)
T ss_dssp             EEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEE
T ss_pred             cceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEE
Confidence            1222211     1123222  2223346789999999999875 555   899999753332221111111000000135


Q ss_pred             eeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        266 SVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       266 ~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      +.|+|.+++.+|.|.|+|.|.|..+
T Consensus       178 ~~L~I~~~~~~D~G~Y~C~a~n~~~  202 (323)
T 2wqr_A          178 STLPVGTRDWIEGETYQCRVTHPHL  202 (323)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEECHHHccCCCCEEEEEECCCC
Confidence            6899999999999999999999873

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.71  E-value=1.1e-16  Score=119.84  Aligned_cols=145  Identities=11%  Similarity=0.092  Sum_probs=90.0

Q ss_pred             eceEEecCCcEEEEEEe-ccCceEEEEEcCccceeeccC-------cceEEEeeeeCCeEEEEEeec--ccCcceEEEee
Q psy15235         29 GDTEIMEGAPINISCIL-TIFEQVKWQLNGRNINQSSVD-------SGFAATANLTEDNFKYSIHEA--ILESGYVQSSL   98 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~-~~~~~v~W~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~   98 (323)
                      .++.+.+|++|+|.|.+ .+.+.+.|++++..+......       .......+...+  .|.|.++  .|+|.|+|.+.
T Consensus         3 ~~v~~~~G~~VtL~c~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~--sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG--SLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEEETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTC--CEEECSCCGGGCEEEEEECT
T ss_pred             cEEEEEcCCCEEEcCCCCCCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCC--eEEECCCChhhCceEEEEEe
Confidence            45788999999999994 456799999987654432110       000111222234  4555554  55999999998


Q ss_pred             ccCCccceeeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCC
Q psy15235         99 FIPRMNAITGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDD  177 (323)
Q Consensus        99 ~~~~~~~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  177 (323)
                      +..+.......+.. .+...+........|.|.+.+.+   .+.+.|++++..+..         .....+.+.  ...|
T Consensus        81 n~~~~~~~~L~V~~~~~~p~i~~~~~~~~L~C~~~~~p---~p~i~W~~~~~~l~~---------~~~~~l~~~--~~~~  146 (171)
T 1ccz_A           81 NITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGT---DVELKLYQGKEHLRS---------LRQKTMSYQ--WTNL  146 (171)
T ss_dssp             TCCSCEEEEEEEECCCCCCEEEEETTTTEEEEECSSCS---SCEEEEEETTEEEEE---------ESSSEEEEE--CSCC
T ss_pred             CCCCcEEEEEEEECcCCCCEEEEecCCcEEEEEeCCCC---CcEEEEEECCEECcC---------CcceEEEEe--ccCC
Confidence            76653222222211 11122222222348999999877   789999999988765         222334433  3678


Q ss_pred             CeeEEEEEEcCCC
Q psy15235        178 AGQYSCRLIDPKS  190 (323)
Q Consensus       178 ~G~y~C~~~~~~~  190 (323)
                      .|.|+|.| .|..
T Consensus       147 ~g~Y~C~a-~N~~  158 (171)
T 1ccz_A          147 RAPFKCKA-VNRV  158 (171)
T ss_dssp             SSCEEEEE-EETT
T ss_pred             CceEEEEE-Eccc
Confidence            89999999 7773

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.71  E-value=5.9e-16  Score=120.64  Aligned_cols=170  Identities=12%  Similarity=0.161  Sum_probs=115.9

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .|.+ ..+....+..|+.+.|.|.+.+.|   .+.|.|+++|..+....  ..++.    .....|.|.++..+|+|.|+
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p---~p~i~W~~~g~~l~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYP---SATISWFRDGQLLPSSN--YSNIKIYNTPSASYLEVTPDSENDFGNYN   92 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEES---CCEEEEEETTEESSCSS--SCSEEEEEETTEEEEEECCCSGGGCEEEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecC---CCEEEEEECCeECCCCC--CccEEEecCCCeeEEEEecCChhhCeEEE
Confidence            4444 355556788999999999999988   68999999999886511  12333    34678999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEe----cCCCC--cEEEEECCeeeeccCCeeeee
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVV----GSPPP--TVEWRIGNDTYFRSQGRIKLS  256 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~----g~p~~--~~~W~~~~~~~~~~~~~~~~~  256 (323)
                      |.+ .|..+.  ....+.+.|..+|........ ...+..+.|.|...    +.|..  .+.|.+++..... .......
T Consensus        93 C~a-~n~~g~--~~~~~~l~v~~~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~-~~~~~~~  167 (215)
T 3mtr_A           93 CTA-VNRIGQ--ESLEFILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH-SKWYDAK  167 (215)
T ss_dssp             EEE-ECSSCE--EEEEEEEEECCCCCCCEEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE-EEEEEHH
T ss_pred             EEE-EECCCc--eEEEEEEEECCCCCCCcceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc-ccccccc
Confidence            999 777443  455666666655533211111 24578899999852    22333  3788887653211 0111111


Q ss_pred             cCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .    ......|+|.++...+.|.|+|.|.|..|.
T Consensus       168 ~----~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~  198 (215)
T 3mtr_A          168 E----ASMEGIVTIVGLKPETTYAVRLAALNGKGL  198 (215)
T ss_dssp             H----HHHHTEEEEECCCTTCEEEEEEEEEESSCB
T ss_pred             c----ccccccEEECCCCCCCEEEEEEEEEeCCcc
Confidence            0    001378999999999999999999999987

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.71  E-value=5.1e-17  Score=129.62  Aligned_cols=171  Identities=12%  Similarity=0.184  Sum_probs=98.5

Q ss_pred             eeceEEecCCcEEEEEEe--ccCc-----eEEEEEcCccceee----ccCcceEEE---------eeeeCCeEEEEEeec
Q psy15235         28 FGDTEIMEGAPINISCIL--TIFE-----QVKWQLNGRNINQS----SVDSGFAAT---------ANLTEDNFKYSIHEA   87 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~--~~~~-----~v~W~~~g~~~~~~----~~~~~~~~~---------~~~~~~~~~l~i~~~   87 (323)
                      +..+.+.+|++|+|.|.+  .+.+     .+.|++++......    .........         .....++..|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            455678999999999996  4444     49999964332210    000000000         011134455777766


Q ss_pred             c--cCcceEEEeeccCCccceeeeeee--CCceeE-----EecCCcEEEEEEeec-CCCCCCc-eEEEEECCeecccc--
Q psy15235         88 I--LESGYVQSSLFIPRMNAITGNYDI--EPKYKV-----FEYRVPFTLKCNVTS-PPPGDDY-QIVWYKGNKSITEA--  154 (323)
Q Consensus        88 ~--~~G~Y~C~~~~~~~~~~~~~~~~~--~~~~~~-----~~~g~~v~l~C~~~~-~~~~~~~-~i~W~~~~~~~~~~--  154 (323)
                      +  |+|.|+|.+.+..+.......+.+  .|.+.+     ...|+.++|.|.+.+ .|   .+ .|.|++++..+...  
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P---~pi~v~W~k~g~~l~~~~~  166 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYP---EAINITWEKQTQKFPHPIE  166 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBS---SCCEEEEEEECSSSCSCEE
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEEC---CCeEEEEEECCccCCCccc
Confidence            5  499999999876654333333333  333332     345778889999998 55   56 99999998654320  


Q ss_pred             -----------ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        155 -----------TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       155 -----------~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                                 ......+ .....|.+.....+|.|.|+|.+ .|..+.......+.|.|
T Consensus       167 ~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~YtC~a-~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          167 ISEDVITGPTIKNMDGTF-NVTSCLKLNSSQEDPGTVYQCVV-RHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             ECTTEEEEEEEECTTSCE-EEEEEEECC--CCCTTCEEEEEE-ECTTCSSCEEEEECC--
T ss_pred             cccceeecccEECCCCCE-EEEEEEEEcCccccCCCEEEEEE-ECCCCCCCcEEEEEEEE
Confidence                       0001111 23456788888888999999999 78765555666666666

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.70  E-value=1.2e-15  Score=123.69  Aligned_cols=166  Identities=15%  Similarity=0.199  Sum_probs=103.9

Q ss_pred             CceEE-EeeceEEecCCcEEEEEEec--cCceEEEEEcCc--cceeecc-------CcceEEEeeeeCCeEEEEEeecc-
Q psy15235         22 DGKIT-YFGDTEIMEGAPINISCILT--IFEQVKWQLNGR--NINQSSV-------DSGFAATANLTEDNFKYSIHEAI-   88 (323)
Q Consensus        22 ~~~i~-~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~--~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~-   88 (323)
                      +..+. .+..+.+.+|++|+|.|.+.  +.+.+.|+|++.  .+.....       .....+..........|.|.+++ 
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            33444 46678899999999999954  457899999642  1111000       00111222334566778888776 


Q ss_pred             -cCcceEEEeeccCCcc-----ceeee-----------------eee-CCceeEEecCCcEEEEEEeecCCCCCCceEEE
Q psy15235         89 -LESGYVQSSLFIPRMN-----AITGN-----------------YDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVW  144 (323)
Q Consensus        89 -~~G~Y~C~~~~~~~~~-----~~~~~-----------------~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W  144 (323)
                       |+|.|+|.+.+..+..     .+.+.                 +.+ .+....+.+|++++|.|.+.+.++. .+.+.|
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W  170 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTIS-DYWIHW  170 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGG-GSEEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCC-CCEEEE
Confidence             4999999998754321     11111                 111 2233457789999999999986632 379999


Q ss_pred             EECC--eecc------c-------cccccCcEEe------ceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        145 YKGN--KSIT------E-------ATELSGRLTQ------SKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       145 ~~~~--~~~~------~-------~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +|++  ....      .       ......++..      ....|.|.+++.+|+|.|+|.+ .|.
T Consensus       171 ~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~n~  235 (276)
T 3auv_A          171 VRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCAR-FVF  235 (276)
T ss_dssp             EEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE-ECS
T ss_pred             EEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEE-EcC
Confidence            9963  2110      0       0112345541      2348999999999999999999 665

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=4.6e-17  Score=126.64  Aligned_cols=161  Identities=15%  Similarity=0.193  Sum_probs=101.3

Q ss_pred             EEEeeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceee---------ccCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235         25 ITYFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQS---------SVDSGFAATANLTEDNFKYSIHEAIL--   89 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~--   89 (323)
                      +..+.++.+.+|++|+|.|.+.  +.+.+.|+|++  ..+...         ....+  +..........|.|.+++.  
T Consensus         3 v~qp~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~D   80 (212)
T 1nfd_E            3 LIQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPER--FSGSTSGTTATLTISGAQPED   80 (212)
T ss_dssp             EECCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTT--EEEEEETTEEEEEETTCCGGG
T ss_pred             eECCCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCcccc--EEEEeeCCEEEEEECcCCccc
Confidence            3446778899999999999943  45689999953  333210         01112  2223345667788887754  


Q ss_pred             CcceEEEeeccCCc-----cceeeeee----eCCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeecccc
Q psy15235         90 ESGYVQSSLFIPRM-----NAITGNYD----IEPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA  154 (323)
Q Consensus        90 ~G~Y~C~~~~~~~~-----~~~~~~~~----~~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~  154 (323)
                      +|.|+|.+.+....     ......+.    ..|.+..      +..|+.++|.|.+.+.+|. .+.|.|+++|..+...
T Consensus        81 ~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~-~~~v~W~k~g~~~~~~  159 (212)
T 1nfd_E           81 EAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPG-SATVTWKANGATINDG  159 (212)
T ss_dssp             CSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSS-CCEEEEEETTEEECSS
T ss_pred             CEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECC-ccEEEEEECCeEcCCC
Confidence            99999999852111     11111111    1222221      2358999999999987431 3799999999887652


Q ss_pred             cccc------CcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        155 TELS------GRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       155 ~~~~------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ....      +.+ .....|.|.++..+|+|.|+|.| .|..
T Consensus       160 ~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~G~Y~C~a-~n~~  199 (212)
T 1nfd_E          160 VKTTKPSKQGQNY-MTSSYLSLTADQWKSHNRVSCQV-THEG  199 (212)
T ss_dssp             CBCCCCBCSSSCE-EEEEBCCEEHHHHHTCSCEEEEE-ECTT
T ss_pred             eecCCceecCCCc-eEEEEEEEchhhcCCCCeEEEEE-EeCC
Confidence            1100      011 12356889999999999999999 7764

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.70  E-value=3.8e-16  Score=119.57  Aligned_cols=146  Identities=9%  Similarity=0.147  Sum_probs=91.5

Q ss_pred             eeceEEecCCcEEEEEEec---cCceEEEEEcCccceeecc-----------Ccc--eEEEeeeeCCeEEEEEeec--cc
Q psy15235         28 FGDTEIMEGAPINISCILT---IFEQVKWQLNGRNINQSSV-----------DSG--FAATANLTEDNFKYSIHEA--IL   89 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g~~~~~~~~-----------~~~--~~~~~~~~~~~~~l~i~~~--~~   89 (323)
                      +..+.+.+|++|+|.|.+.   +.+.+.|+++|..+.....           ...  ....+. .+  ..|.|.++  .|
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~--~sL~I~~v~~~D   81 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-QS--YSLQLSNLKMED   81 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-TT--CCEEECSCCGGG
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-CC--eEEEECCCCccc
Confidence            4567899999999999954   2368999998765432110           000  011111 23  44555555  55


Q ss_pred             CcceEEEeeccCCccceeeeeee--C---Ccee----EEecCC-cEEEEEEeecCCCCCCceEEEEECCeeccccccccC
Q psy15235         90 ESGYVQSSLFIPRMNAITGNYDI--E---PKYK----VFEYRV-PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG  159 (323)
Q Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~--~---~~~~----~~~~g~-~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~  159 (323)
                      +|.|+|.+.+..+.......+.+  .   |.+.    ....|. .++|.|.+.+.+|  .+.|.|+++|..+..      
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p--~p~i~W~~~g~~l~~------  153 (193)
T 2if7_A           82 TGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADD--NVSFRWEALGNTLSS------  153 (193)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCT--TCEEEEEETTEEEES------
T ss_pred             CceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCC--ceEEEEEeCCEEcCC------
Confidence            99999999877654322222322  1   1111    123455 8999999998654  689999999987643      


Q ss_pred             cEEeceeEEEEeeeecC-CCeeEEEEEEcCCC
Q psy15235        160 RLTQSKDSITIRKTTVD-DAGQYSCRLIDPKS  190 (323)
Q Consensus       160 ~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~  190 (323)
                           ...|.|.....+ |+|.|+|.| .|..
T Consensus       154 -----~~~l~i~~~~~~~d~G~Y~C~a-~N~~  179 (193)
T 2if7_A          154 -----QPNLTVSWDPRISSEQDYTCIA-ENAV  179 (193)
T ss_dssp             -----SSEEEEEECTTTCSCCEEEEEE-EETT
T ss_pred             -----CCeEEEEeccCcCCCCcEEEEE-ECCC
Confidence                 234666544444 899999999 7763

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=3.8e-16  Score=123.00  Aligned_cols=172  Identities=16%  Similarity=0.189  Sum_probs=107.1

Q ss_pred             CCceeEEecCCcEEEEEEeecC--CCCCCceEEEEECC--ee---cc-cc--------ccccCcEE--e----ceeEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSP--PPGDDYQIVWYKGN--KS---IT-EA--------TELSGRLT--Q----SKDSITI  170 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~--~~~~~~~i~W~~~~--~~---~~-~~--------~~~~~~~~--~----~~~~l~i  170 (323)
                      .|....+.+|++++|.|.+.+.  +   ...+.|||..  ..   +. ..        ....+|+.  .    ....|.|
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            7 PEISISRPRDETAQISCKVFIESFR---SVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGG---GCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             cCCEEEEeCCCcEEEEEEeeccccC---ccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            4556678899999999999774  3   4689999842  21   10 00        01345665  1    3458999


Q ss_pred             eeeecCCCeeEEEEEEcCC--CCCCCCceeeeeEEEe---------cceee--eeceeEEeeCCeEEEEEEEecC-CC-C
Q psy15235        171 RKTTVDDAGQYSCRLIDPK--STNTTPLAQADFDVIM---------KPTAK--LVETLTVIEGEKLRLECLVVGS-PP-P  235 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~--~~~~~~~~~~~l~v~~---------~p~~~--~~~~~~~~~g~~~~l~C~~~g~-p~-~  235 (323)
                      .+++.+|+|.|.|.+ .+.  ...........|.|..         +|.+.  .+....+..|+.++|.|.+.|. |. +
T Consensus        84 ~~v~~~D~G~Y~C~~-~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~  162 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSY-GEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVI  162 (230)
T ss_dssp             CSCCGGGCSEEEEEE-CCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred             CcCChhhCEEEEEEE-ECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCe
Confidence            999999999999999 553  1111112234666752         23222  2222234468899999999875 75 5


Q ss_pred             cEEEEE-CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        236 TVEWRI-GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       236 ~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .+.|++ +|..+...... ............+.|+|..... + |.|+|.|.|..+.
T Consensus       163 ~v~W~~~~g~~l~~~~~~-~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          163 RVYWKEKDGNTILDSQEG-DTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             EEEEECTTSSCBCCCEEC-CCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             EEEEEccCCeEccccccc-eeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            899999 77655321110 0000000011246799988875 4 9999999998854

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.70  E-value=5.9e-16  Score=120.86  Aligned_cols=159  Identities=13%  Similarity=0.200  Sum_probs=96.7

Q ss_pred             EEEeeceEEecCCcEEEEEEec---cCceEEEEEcC--cccee---e----------ccCcceEEEeeeeCCeEEEEEee
Q psy15235         25 ITYFGDTEIMEGAPINISCILT---IFEQVKWQLNG--RNINQ---S----------SVDSGFAATANLTEDNFKYSIHE   86 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~g--~~~~~---~----------~~~~~~~~~~~~~~~~~~l~i~~   86 (323)
                      +..+..+.+.+|++|+|.|.+.   +.+.+.|+|..  .....   .          ....+  +......+...|.|.+
T Consensus         4 v~~~p~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~   81 (218)
T 3s96_B            4 LTQSSSASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDR--FSGSSSGADRYLSISN   81 (218)
T ss_dssp             EECCSEEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTT--EEEEEETTEEEEEESS
T ss_pred             EEeCCcEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccc--eEEecCCceEEEEEcc
Confidence            3334467899999999999943   45799999932  21111   0          01111  2222246677788887


Q ss_pred             ccc--CcceEEEeeccCC-----c--cceeeeee----eCCceeE------EecCCcEEEEEEeecCCCCCCc-eEEEEE
Q psy15235         87 AIL--ESGYVQSSLFIPR-----M--NAITGNYD----IEPKYKV------FEYRVPFTLKCNVTSPPPGDDY-QIVWYK  146 (323)
Q Consensus        87 ~~~--~G~Y~C~~~~~~~-----~--~~~~~~~~----~~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~i~W~~  146 (323)
                      ++.  +|.|+|.+.+..+     .  ......+.    ..|.+..      ...|+.++|.|.+.+.+|  .+ .|.|++
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p--~~~~v~W~k  159 (218)
T 3s96_B           82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSP--SGVTVAWKA  159 (218)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBS--SCCEEEEEE
T ss_pred             CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccC--CCeEEEEEE
Confidence            764  9999999987654     1  11111111    1222222      234789999999998443  44 999999


Q ss_pred             CCeeccccccc------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        147 GNKSITEATEL------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       147 ~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +|..+......      +..+ .....|.|.....+|+|.|+|.| .|.
T Consensus       160 ~g~~l~~~~~~~~~~~~~~~~-~~~s~l~i~~~~~~d~g~Y~C~a-~n~  206 (218)
T 3s96_B          160 NGTPITQGVDTSNPTKEGNKF-MASSFLHLTSDQWRSHNSFTCQV-THE  206 (218)
T ss_dssp             TTEEC--------------CE-EEEEEEEEEHHHHHTCSCEEEEE-EET
T ss_pred             CCEECcCceecCcccccCCcE-EEEEEEEEeHHHccCCCeEEEEE-EeC
Confidence            99888641110      1111 22344778888888999999999 666

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.69  E-value=1.9e-15  Score=115.56  Aligned_cols=156  Identities=12%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             CceEEEeec-eEEecCCcEEEEEEe-ccCc--eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEE
Q psy15235         22 DGKITYFGD-TEIMEGAPINISCIL-TIFE--QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQ   95 (323)
Q Consensus        22 ~~~i~~~~~-~~v~~G~~v~L~C~~-~~~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C   95 (323)
                      ...+..+.. +.|.+|++++|+|.+ .+.+  .|.|.+.+..+..      ..    .......|.|.+++  |+|.|.|
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a~~p~P~~~i~W~~~~~~l~~------~~----~~~~~~~L~I~~v~~~d~G~Y~C   76 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA------VQ----SDTGRSVLTVRNASLSAAGTRVC   76 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC------EE----EESSEEEEEECSCCGGGCEEEEE
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEECCCCCCCcceEEeecccccCc------EE----ecCCccEEEECccCcccCceEEE
Confidence            344443433 689999999999995 4456  9999996654411      11    12455678888887  6999999


Q ss_pred             EeeccCCccceeeeeee--CCceeEEe-----cCCcEEEEEEeecCCCCC--CceEEEEECCeeccccccccCcE-----
Q psy15235         96 SSLFIPRMNAITGNYDI--EPKYKVFE-----YRVPFTLKCNVTSPPPGD--DYQIVWYKGNKSITEATELSGRL-----  161 (323)
Q Consensus        96 ~~~~~~~~~~~~~~~~~--~~~~~~~~-----~g~~v~l~C~~~~~~~~~--~~~i~W~~~~~~~~~~~~~~~~~-----  161 (323)
                      .+.+..+.......+.+  .|....+.     .|+.+ |.|.+.+.+|..  .++|+|+|++.++..........     
T Consensus        77 ~a~n~~~~~~~~~~ltV~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~  155 (210)
T 1gsm_A           77 VGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEE  155 (210)
T ss_dssp             EEEETTEEEEEEEEEEEEBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTT
T ss_pred             EEEeCCCceEEEEEEEEEecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccc
Confidence            99987665544444444  44433332     68888 999999876542  26899999999885421101011     


Q ss_pred             ---------EeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        162 ---------TQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       162 ---------~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                               ..-+..+.+.....+|.+.|+|+| .+.
T Consensus       156 ~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a-~~~  191 (210)
T 1gsm_A          156 EPQGDEDVLFRVTERWRLPPLGTPVPPALYCQA-TMR  191 (210)
T ss_dssp             CCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEE-EEE
T ss_pred             cccCCcceEEEEEEEEeecCCcccCCceEEEEE-Eee
Confidence                     022344555566667778999999 554

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.69  E-value=1.2e-15  Score=117.65  Aligned_cols=151  Identities=10%  Similarity=0.147  Sum_probs=94.9

Q ss_pred             ceEEecCCcEEEEEEec------cCceEEEEEcCccceeeccC--------cceEEEeeeeCCeEEEEEeecc--cCcce
Q psy15235         30 DTEIMEGAPINISCILT------IFEQVKWQLNGRNINQSSVD--------SGFAATANLTEDNFKYSIHEAI--LESGY   93 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~~------~~~~v~W~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~--~~G~Y   93 (323)
                      ++.+.+|++|+|.|.+.      +.+.+.|++++..+......        .++ ..++ ..+...|.|.+++  |+|.|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r-~~~~-~~~~~~L~I~~v~~~D~G~Y   80 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNR-TIFD-ITNNLSIVILALRPSDEGTY   80 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTT-EEEE-STTTTEEEECSCCGGGCEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccce-eEEc-cCCCcEEEEecccchhCeEE
Confidence            46789999999999963      34689999998776422100        011 1111 1234556666655  59999


Q ss_pred             EEEeeccCCccc-----eeeeeee-----CCceeEE--ecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccccCc
Q psy15235         94 VQSSLFIPRMNA-----ITGNYDI-----EPKYKVF--EYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGR  160 (323)
Q Consensus        94 ~C~~~~~~~~~~-----~~~~~~~-----~~~~~~~--~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~~~~  160 (323)
                      +|.+.+..+...     ....+.+     .|.....  ..|+.++|.|.+. +.|   .+.|.|+++|..+...   ..+
T Consensus        81 ~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~P---~p~i~W~k~g~~l~~~---~~~  154 (201)
T 1dr9_A           81 ECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFP---EPHLSWLENGEELNAI---NTT  154 (201)
T ss_dssp             EEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEESS---CEEEEEEESSCEECCS---EEE
T ss_pred             EEEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCccC---CCEEEEEECCEECccc---cce
Confidence            999998654321     2222332     1333332  4588999999995 777   7899999999887641   112


Q ss_pred             EE-ece-eEE---EEeeeecCCCeeEEEEEEcCC
Q psy15235        161 LT-QSK-DSI---TIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       161 ~~-~~~-~~l---~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +. ... ..+   .+..+..+|.|.|+|.| .|.
T Consensus       155 ~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a-~n~  187 (201)
T 1dr9_A          155 VSQDPETELYAVSSKLDFNMTTNHSFMCLI-KYG  187 (201)
T ss_dssp             EEECTTTCCEEEEEEEEEETTSCEEEEEEE-EET
T ss_pred             EEecCCCcEEEEEEEEEEEecCCCEEEEEE-ecC
Confidence            21 111 111   23455678999999999 666

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.69  E-value=4.1e-16  Score=123.56  Aligned_cols=172  Identities=17%  Similarity=0.280  Sum_probs=106.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eecc---c--------cccccCcEE-----eceeEEEEeeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSIT---E--------ATELSGRLT-----QSKDSITIRKTT  174 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~---~--------~~~~~~~~~-----~~~~~l~i~~~~  174 (323)
                      .|....+.+|++++|.|.+.. +   .+.+.|||++  ....   .        ...+..|+.     .....|.|.+++
T Consensus         5 ~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   80 (238)
T 1bec_A            5 SPRNKVAVTGGKVTLSCQQTN-N---HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT   80 (238)
T ss_dssp             ECSEEEEETTCCEEEEEEESS-C---CSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred             CCCeeEEeCCCcEEEEEEeCC-C---CceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence            455667889999999999853 4   5799999853  1110   0        001234544     234689999999


Q ss_pred             cCCCeeEEEEEEcCCCC---CCCCceeeeeEEEe------cceeeee--ceeEEeeCCeEEEEEEEecC-CCC-cEEEEE
Q psy15235        175 VDDAGQYSCRLIDPKST---NTTPLAQADFDVIM------KPTAKLV--ETLTVIEGEKLRLECLVVGS-PPP-TVEWRI  241 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~---~~~~~~~~~l~v~~------~p~~~~~--~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~  241 (323)
                      .+|+|.|.|.+ .+..+   .........|.|..      +|.+...  ....+.+|+.++|.|.+.|. |.+ .+.|++
T Consensus        81 ~~D~G~Y~C~~-~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~  159 (238)
T 1bec_A           81 PSQTSVYFCAS-GGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV  159 (238)
T ss_dssp             GGGCEEEEEEE-ESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred             cccCEEEEEEE-ecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence            99999999999 55421   01111233566654      4444422  22234579999999999886 655 899999


Q ss_pred             CCeeeeccCCee--eeecCCCC-CCcceeEEEeecCcCC-CeEEEEEEeeccc
Q psy15235        242 GNDTYFRSQGRI--KLSEHPEK-GTANSVLQIDEATMAD-RGNYYCHGNNVAT  290 (323)
Q Consensus       242 ~~~~~~~~~~~~--~~~~~~~~-~~~~~~L~i~~v~~~d-~G~y~C~a~n~~g  290 (323)
                      +|..+.......  .... .++ ....+.|.|.....+| .|.|+|.|.|...
T Consensus       160 ~g~~~~~~~~~~~~~~~~-~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          160 NGKEVHSGVSTDPQAYKE-SNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             TTEEECTTEEECSSCEEE-ETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             CCEECCCceecccceEeC-CCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            998875321110  0000 000 0123456666555555 5789999999863

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.69  E-value=8.9e-16  Score=119.99  Aligned_cols=161  Identities=16%  Similarity=0.157  Sum_probs=98.1

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS--------------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~--------------~~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+..+.++.+.+|++++|.|.+.+    .+.+.|+|+  |..+...              ....+..+..+...+...|
T Consensus         2 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (219)
T 1c1e_H            2 IQLVQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYL   81 (219)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEE
T ss_pred             ccEeCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEE
Confidence            3566777888999999999999542    578999997  4433210              0111222222222455678


Q ss_pred             EEeeccc--CcceEEEeeccCCcc--c--eeeeeee------CCceeE------EecCCcEEEEEEeec-CCCCCCc-eE
Q psy15235         83 SIHEAIL--ESGYVQSSLFIPRMN--A--ITGNYDI------EPKYKV------FEYRVPFTLKCNVTS-PPPGDDY-QI  142 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~~~~--~--~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~-~~~~~~~-~i  142 (323)
                      .|.+++.  +|.|+|.+.+..+..  .  ....+.+      .|.+..      +..|+.++|.|.+.+ .|   .+ .|
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P---~p~~v  158 (219)
T 1c1e_H           82 QINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP---EPVTV  158 (219)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBS---SCCEE
T ss_pred             EECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccC---CCeEE
Confidence            8877764  999999998765210  0  0111111      122222      346999999999998 56   56 99


Q ss_pred             EEEECCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        143 VWYKGNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       143 ~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .|++++..+.....    ..+.+ .....|.|... ..|.|.|+|.| .|.
T Consensus       159 ~W~~~g~~~~~~~~~~~~~~~~~-~~~s~L~i~~~-~~d~g~Y~C~a-~n~  206 (219)
T 1c1e_H          159 TWNSGSLSSGVHTFPAVLQSDLY-TLSSSVTVPSS-PRPSETVTCNV-AHP  206 (219)
T ss_dssp             EEGGGTBCTTEEECCCEESSSCE-EEEEEEEEESS-STTTSCCEEEE-EEG
T ss_pred             EEEeCCcccceEecCCcccCCeE-EEEEEEEEecc-cCCCCEEEEEE-EeC
Confidence            99999876532000    01111 22346788443 44669999999 666

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.69  E-value=5.4e-15  Score=115.68  Aligned_cols=165  Identities=11%  Similarity=0.148  Sum_probs=101.9

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee----------------ccCcceEEEeeeeCCeE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS----------------SVDSGFAATANLTEDNF   80 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~----------------~~~~~~~~~~~~~~~~~   80 (323)
                      ..+..+.++.+.+|++|+|.|.+.+    .+.+.|+|..  ......                ....+..+..+...+.+
T Consensus         2 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (221)
T 3m8o_H            2 VQLVESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTA   81 (221)
T ss_dssp             CEEEEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEE
T ss_pred             ceEEccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEE
Confidence            3466777888999999999999542    4789999843  211100                01122223333335677


Q ss_pred             EEEEeeccc--CcceEEEeeccCC-c---cceeeeee--e--CCceeEE-----ecCCcEEEEEEeecCCCCCCceEEEE
Q psy15235         81 KYSIHEAIL--ESGYVQSSLFIPR-M---NAITGNYD--I--EPKYKVF-----EYRVPFTLKCNVTSPPPGDDYQIVWY  145 (323)
Q Consensus        81 ~l~i~~~~~--~G~Y~C~~~~~~~-~---~~~~~~~~--~--~~~~~~~-----~~g~~v~l~C~~~~~~~~~~~~i~W~  145 (323)
                      .|.|.+++.  +|.|+|.+.+... .   ......+.  .  .|.+...     ..|+.++|.|.+.+..|...+.+.|+
T Consensus        82 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C~~~~~~P~~~~~v~W~  161 (221)
T 3m8o_H           82 FLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWS  161 (221)
T ss_dssp             EEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSCCCTTEEEEEEEEEEEBSSCSEEEEES
T ss_pred             EEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcccccCCCEEEEEEEEeeECCCCEEEEEE
Confidence            788887754  9999999987531 1   11111111  0  2222211     47899999999998443111599999


Q ss_pred             ECCeeccccc------cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        146 KGNKSITEAT------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       146 ~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++|..+....      ..++++ .....|.|.....+|.|.|+|.+ .+.
T Consensus       162 ~~g~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~ytC~v-~~~  209 (221)
T 3m8o_H          162 ESGQGVTARNFPPSQDASGDLY-TTSSQLTLPATQCLAGKSVTCHV-KHY  209 (221)
T ss_dssp             CCSTTCEEEECCCEECSSSSCE-EEEEEEEEEGGGSCTTCEEEEEE-EET
T ss_pred             ECCEECceEEcCceeeCCCCcE-EEEEEEEECHHHcCCCCeEEEEE-EEC
Confidence            9987663200      112333 22346889988888999999999 665

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.69  E-value=4.2e-16  Score=124.11  Aligned_cols=182  Identities=19%  Similarity=0.245  Sum_probs=107.6

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      +....+.+|++++|.|.+.+.... ...+.|||.  +.....             .....+|+.      .....|+|.+
T Consensus         6 ~~~v~v~~G~~v~L~C~~s~~~~~-~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   84 (248)
T 3u2s_H            6 SGGGVVQPGSSLRLSCAASGFDFS-RQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNS   84 (248)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCEEEeCCCCEEEEEEeccccCC-ccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence            445668899999999999763211 468999983  211100             112345665      2345799999


Q ss_pred             eecCCCeeEEEEEEcCCCC--------------------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEE
Q psy15235        173 TTVDDAGQYSCRLIDPKST--------------------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLEC  227 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~--------------------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C  227 (323)
                      ++.+|+|.|.|.+ .+..+                    .........+.|.    .+|.+. .++...+..|+.++|.|
T Consensus        85 v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C  163 (248)
T 3u2s_H           85 LRVEDTATYFCVR-EAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC  163 (248)
T ss_dssp             CCGGGCEEEEEEE-EEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEE
T ss_pred             CCHHHCEEEEEEE-eCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEE
Confidence            9999999999999 43200                    0011223355554    244444 33344456799999999


Q ss_pred             EEec-CC-CCcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        228 LVVG-SP-PPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       228 ~~~g-~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      .+.+ .| +..+.|++++..+..........  .++ ....+.|+|.....+| |.|+|.|.|..+.    ......|.+
T Consensus       164 ~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~----~~~~~~l~~  236 (248)
T 3u2s_H          164 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQ--SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKKVEP  236 (248)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEEC--TTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGT----EEEEEECCC
T ss_pred             EEeeEECCCeEEEEeECCccCceeecCceEC--CCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCC----cceEEEEcc
Confidence            9977 45 34799999886421110000000  111 1134679999988888 9999999999854    444444443

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.69  E-value=6.4e-16  Score=121.07  Aligned_cols=163  Identities=15%  Similarity=0.162  Sum_probs=100.7

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccce---ee-------------ccCcceEEEeeeeCCeE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNIN---QS-------------SVDSGFAATANLTEDNF   80 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~---~~-------------~~~~~~~~~~~~~~~~~   80 (323)
                      ..+..+.++.+.+|++|+|.|.+.+    .+.+.|+|++  ..+.   ..             ....+..+..+...+..
T Consensus         2 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (222)
T 1q9r_B            2 VKLVESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSIL   81 (222)
T ss_dssp             CEEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEE
T ss_pred             ceEecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeE
Confidence            3566777889999999999999542    5689999953  2211   00             01112222222224566


Q ss_pred             EEEEeeccc--CcceEEEeeccCC-----ccceeeeeee------CCceeE------EecCCcEEEEEEeecCCCCCCc-
Q psy15235         81 KYSIHEAIL--ESGYVQSSLFIPR-----MNAITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-  140 (323)
Q Consensus        81 ~l~i~~~~~--~G~Y~C~~~~~~~-----~~~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-  140 (323)
                      .|.|.+++.  +|.|+|.+.+..+     .......+.+      .|.+..      +..|+.++|.|.+.+..|  .+ 
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~  159 (222)
T 1q9r_B           82 YLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP--EPV  159 (222)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBS--SCC
T ss_pred             EEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEEC--CCC
Confidence            788877764  9999999987542     1100011111      122222      346999999999998633  56 


Q ss_pred             eEEEEECCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        141 QIVWYKGNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       141 ~i~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .|.|+++|..+.....    ..+.+ .....|.|.++..+| |.|+|.| .|..
T Consensus       160 ~v~W~~~g~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-g~y~C~a-~n~~  210 (222)
T 1q9r_B          160 TVTWNSGSLSSGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNV-AHPA  210 (222)
T ss_dssp             EEEEGGGTBCTTEEEEEEEEETTEE-EEEEEEEEETTTTTT-SCCEEEE-EEGG
T ss_pred             EEEEecCCeEcceEeccccccCCcE-EEEEEEEECchhcCC-CeEEEEE-EccC
Confidence            9999999876542100    01111 223468888888888 9999999 6763

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.68  E-value=2.1e-15  Score=116.43  Aligned_cols=163  Identities=17%  Similarity=0.260  Sum_probs=112.4

Q ss_pred             eeeCCceeEEecCCcEEEEEEeecCCCCC-CceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGD-DYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      +.+.|.-..+..|+.++|.|.+.+..|.. ...++|+|||..+..          ....|.+..+...|+|.|+|.+ .+
T Consensus         5 Vs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG----------aT~tLti~s~t~sdSG~YqCvV-TD   73 (304)
T 3shs_A            5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN----------NTATLTVADATSENAGSYKVTV-QD   73 (304)
T ss_dssp             EEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC----------CSSEEEESSCCGGGCEEEEEEE-EE
T ss_pred             EEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC----------CcceEEeeeccccCCeEEEEEE-EE
Confidence            33344555567899999999998765421 358999999988764          4557899999999999999999 56


Q ss_pred             CCCCCCCceeeeeEEEecc--eee--eeceeEEeeCCeEEEEEEE--ec-CC-----CCcEEEEECCeeeeccCCeeeee
Q psy15235        189 KSTNTTPLAQADFDVIMKP--TAK--LVETLTVIEGEKLRLECLV--VG-SP-----PPTVEWRIGNDTYFRSQGRIKLS  256 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v~~~p--~~~--~~~~~~~~~g~~~~l~C~~--~g-~p-----~~~~~W~~~~~~~~~~~~~~~~~  256 (323)
                      ..+......  .+.|...+  .+.  .|....+..+..+.|.+.+  .| .|     ..+++|++++..+..        
T Consensus        74 a~Gcs~tSs--~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg--------  143 (304)
T 3shs_A           74 TDTMTSVES--EVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT--------  143 (304)
T ss_dssp             TTTCCEEEC--CCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES--------
T ss_pred             CCCCeeeee--eEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC--------
Confidence            544432222  33333322  222  3334455667889999988  43 44     458999999987742        


Q ss_pred             cCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEE
Q psy15235        257 EHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       257 ~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                              ...|++......++|.|+|.+.|..+.+..+++..+.
T Consensus       144 --------Aq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~  180 (304)
T 3shs_A          144 --------TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIM  180 (304)
T ss_dssp             --------SSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEE
T ss_pred             --------ccccceeeEEecCCeEEEEEEEcCCCCcccccceEEE
Confidence                    3467777888899999999999998753333333333

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.68  E-value=2e-16  Score=124.63  Aligned_cols=157  Identities=18%  Similarity=0.257  Sum_probs=96.1

Q ss_pred             EEeeceEEecCCcEEEEEEec--cC-ceEEEEEcCccce-----eec-cCcceEEEee----------e-eCCeEEEEEe
Q psy15235         26 TYFGDTEIMEGAPINISCILT--IF-EQVKWQLNGRNIN-----QSS-VDSGFAATAN----------L-TEDNFKYSIH   85 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~~--~~-~~v~W~~~g~~~~-----~~~-~~~~~~~~~~----------~-~~~~~~l~i~   85 (323)
                      ..+..+.+.+|+++.|.|.+.  +. +.+.|++++....     ... .......+..          . ..+.  |.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~--L~i~   82 (231)
T 2pet_A            5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGR--LVLA   82 (231)
T ss_dssp             CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCC--EEES
T ss_pred             cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCce--EEEc
Confidence            346678899999999999954  32 6899999765422     100 0000011111          1 1233  5565


Q ss_pred             ecc--cCcceEEEeeccC-Cccceeeeeee--CC---------ceeEEecCCcE-EEEEEe-ecCCCCCCceEEEEECCe
Q psy15235         86 EAI--LESGYVQSSLFIP-RMNAITGNYDI--EP---------KYKVFEYRVPF-TLKCNV-TSPPPGDDYQIVWYKGNK  149 (323)
Q Consensus        86 ~~~--~~G~Y~C~~~~~~-~~~~~~~~~~~--~~---------~~~~~~~g~~v-~l~C~~-~~~~~~~~~~i~W~~~~~  149 (323)
                      +++  |+|.|+|.+.+.. +.......+.+  .|         ....+.+|+.+ +|.|.+ .+.|   .+.+.|++++.
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p---~p~i~W~~~~~  159 (231)
T 2pet_A           83 EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNP---APKITWYRNGQ  159 (231)
T ss_dssp             SCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBS---CCEEEEEETTE
T ss_pred             ccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECccc---CCEEEEEECCc
Confidence            554  5999999998775 43333223322  11         11123467877 999999 7777   78999999999


Q ss_pred             eccccccccCcEE-e------------ceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        150 SITEATELSGRLT-Q------------SKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       150 ~~~~~~~~~~~~~-~------------~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .+........++. .            ....|.|.....+|.|.|+|.| .|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a-~n  210 (231)
T 2pet_A          160 RLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAA-HY  210 (231)
T ss_dssp             ECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEE-EE
T ss_pred             cCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEE-Ec
Confidence            8876221112322 0            1256788766666799999999 66

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.68  E-value=4.7e-15  Score=118.78  Aligned_cols=163  Identities=14%  Similarity=0.210  Sum_probs=103.6

Q ss_pred             eEEEeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l~   83 (323)
                      ....+..+.+.+|++|+|.|.+.    +.+.+.|+|..  ..+...              ....+..+..+.....+.|.
T Consensus         9 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   88 (256)
T 3juy_B            9 QLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYME   88 (256)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             EEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEE
Confidence            34456778899999999999953    45789999842  221110              01122233323335667788


Q ss_pred             Eeecc--cCcceEEEeecc------------CCcc----ceee-------------------eeeeCCceeEEecCCcEE
Q psy15235         84 IHEAI--LESGYVQSSLFI------------PRMN----AITG-------------------NYDIEPKYKVFEYRVPFT  126 (323)
Q Consensus        84 i~~~~--~~G~Y~C~~~~~------------~~~~----~~~~-------------------~~~~~~~~~~~~~g~~v~  126 (323)
                      |.+++  |+|.|+|.+.+.            ....    .+.+                   .+...+....+.+|++++
T Consensus        89 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~  168 (256)
T 3juy_B           89 LRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERAT  168 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEE
T ss_pred             ECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEE
Confidence            88776  499999999875            1110    1111                   111234445578899999


Q ss_pred             EEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        127 LKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       127 l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |.|.+.+.++  .+.+.|+|.  +.....        ......++.    .....|.|.+++.+|+|.|.|.+ .+.
T Consensus       169 L~C~~~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-~~~  242 (256)
T 3juy_B          169 FSCRSSHSIR--SRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQV-YGA  242 (256)
T ss_dssp             EEEEESSCCT--TCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE-CCS
T ss_pred             EEEEECCCcC--CeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEE-eeC
Confidence            9999988663  379999983  222110        001133443    34567999999999999999999 664

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.68  E-value=2.6e-16  Score=121.92  Aligned_cols=163  Identities=9%  Similarity=0.126  Sum_probs=94.2

Q ss_pred             EEEeeceE-EecCCcEEEEEEecc------CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEE
Q psy15235         25 ITYFGDTE-IMEGAPINISCILTI------FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQ   95 (323)
Q Consensus        25 i~~~~~~~-v~~G~~v~L~C~~~~------~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C   95 (323)
                      +..+.... +.+|++++|.|.+.+      ...+.|+|++..+.....................|.|.+++  |+|.|+|
T Consensus         6 ~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   85 (207)
T 2vol_A            6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKC   85 (207)
T ss_dssp             EECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEE
T ss_pred             EeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEE
Confidence            33444444 889999999999532      23899999987654320000000000000112356676654  5999999


Q ss_pred             EeeccCCccceeeee----ee--CCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-
Q psy15235         96 SSLFIPRMNAITGNY----DI--EPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-  162 (323)
Q Consensus        96 ~~~~~~~~~~~~~~~----~~--~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-  162 (323)
                      .+.+..+.......+    .+  .|.+.+.      ..|+.++|.|.+.+.+|. ...|.|+++|..+........... 
T Consensus        86 ~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~k~g~~l~~~~~~~~~~~~  164 (207)
T 2vol_A           86 RVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPE-DITVEWESNGQPAENYKNTQPIMDT  164 (207)
T ss_dssp             EEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSS-CCEEEEEETTEECSCEEECCCEECT
T ss_pred             EEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECC-CCEEEEEECCEeccCcccCCceECC
Confidence            999876543111111    11  3333322      138899999999986531 359999999988754111000001 


Q ss_pred             ----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        163 ----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       163 ----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                          .....|.|.....+|.|.|+|.| .|.
T Consensus       165 ~g~~~~~s~l~i~~~~~~~~g~ytC~a-~n~  194 (207)
T 2vol_A          165 DGSYFVYSKLNVQKSNWEAGNTFTCSV-LHE  194 (207)
T ss_dssp             TSCEEEEEEEEEEHHHHSSCCEEEEEE-ECT
T ss_pred             CCCEEEEEEEEECHHHcCCCCEEEEEE-ECC
Confidence                11234555555556899999999 676

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.68  E-value=3.5e-16  Score=118.23  Aligned_cols=144  Identities=12%  Similarity=0.223  Sum_probs=89.9

Q ss_pred             eceEEecCCcEEEEEEec-c--CceEEEEEc-CccceeeccC-------cc--eEEEeeeeCCeEEEEEeec--ccCcce
Q psy15235         29 GDTEIMEGAPINISCILT-I--FEQVKWQLN-GRNINQSSVD-------SG--FAATANLTEDNFKYSIHEA--ILESGY   93 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~-~--~~~v~W~~~-g~~~~~~~~~-------~~--~~~~~~~~~~~~~l~i~~~--~~~G~Y   93 (323)
                      .++.+.+|++|+|.|... +  .+.+.|+|+ +..+......       ..  ..+.++...+  .|.|.++  .|+|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~--sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTC--CEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCc--cEEEcCCCHHHCeEE
Confidence            457899999999999953 3  579999994 4333221000       00  1112222234  4555554  559999


Q ss_pred             EEEeeccCCccceeeeeee---CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEE
Q psy15235         94 VQSSLFIPRMNAITGNYDI---EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI  170 (323)
Q Consensus        94 ~C~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i  170 (323)
                      +|.+.+.. .......+.+   .+...+...+..++|.|.+...+   .+.|.|++++..+..         .....+.+
T Consensus        85 ~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~gp---~p~i~W~~~~~~l~~---------~~~~~l~~  151 (180)
T 2dru_A           85 YMRMLHET-EDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGT---DVELKLYQGKEHLRS---------LRQKTMSY  151 (180)
T ss_dssp             EEEEESSS-EEEEEEEEEEECCCCCCEEEEEGGGTEEEEECSSCT---TCEEEEEETTEEEEE---------ESSSEEEE
T ss_pred             EEEEEcCC-eEEEEEEEEEECCCCCCEEEecCCCEEEEEEeCCCC---CCEEEEEECCeECcC---------CCCCEEEE
Confidence            99987655 3222223333   12233334567899999994445   789999999987753         23345555


Q ss_pred             eeeecCCCeeEEEEEEcCCC
Q psy15235        171 RKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ..  .+|+|.|+|.| .|..
T Consensus       152 ~~--~~d~g~Y~C~a-~N~~  168 (180)
T 2dru_A          152 QW--TNLRAPFKCKA-VNRV  168 (180)
T ss_dssp             EC--SCCSSCEEEEE-EETT
T ss_pred             EE--hhcCccEEEEE-ecCc
Confidence            33  68999999999 6763

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.68  E-value=3.7e-16  Score=117.97  Aligned_cols=146  Identities=19%  Similarity=0.167  Sum_probs=92.6

Q ss_pred             eeceEEecCCcEEEEEEec----cCceEEEEE--cCccceeecc------CcceEEEeeeeCCeEEEEEeecccCcceEE
Q psy15235         28 FGDTEIMEGAPINISCILT----IFEQVKWQL--NGRNINQSSV------DSGFAATANLTEDNFKYSIHEAILESGYVQ   95 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~----~~~~v~W~~--~g~~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C   95 (323)
                      ...+...+|++|+|.|...    +.+.|.|++  ++..+.....      ..++.. .. .++.+.|.-....|+|.|+|
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~-~~-~ngsL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK-LF-KNGTLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEE-EC-TTSCEEECSCCGGGCEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEE-EC-CCCCEEECCCChhhCEEEEE
Confidence            3456788999999999643    357899999  8876643210      111111 11 24444444444455999999


Q ss_pred             EeeccCCccce--eeeeee---CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEE
Q psy15235         96 SSLFIPRMNAI--TGNYDI---EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITI  170 (323)
Q Consensus        96 ~~~~~~~~~~~--~~~~~~---~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i  170 (323)
                      .+.+..+....  ...+.+   .+.+.+...+..++|.|.+.+.+   .+.|.|+++|..+ .         .....+.+
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~~p---~~~~~W~~~g~~l-~---------~~~~~i~~  150 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGT---DPELNLYQDGKHL-K---------LSQRVITH  150 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCS---SCEEEEEESSCEE-E---------EESSCEEE
T ss_pred             EEEeCCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEccCCC---CCEEEEEECCEEC-C---------CCCcEEEE
Confidence            99887655322  222222   12223333455899999999887   6899999999887 3         12223333


Q ss_pred             eeeecCCCeeEEEEEEcCCC
Q psy15235        171 RKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .. ..+|+|.|+|.| .|..
T Consensus       151 ~~-~~~d~G~Y~C~a-~N~~  168 (182)
T 1hnf_A          151 KW-TTSLSAKFKCTA-GNKV  168 (182)
T ss_dssp             EC-CSCEEEEEEEEE-ECSS
T ss_pred             ec-ccCCCcEEEEEE-EeCC
Confidence            32 468999999999 7773

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.68  E-value=5e-16  Score=131.40  Aligned_cols=167  Identities=13%  Similarity=0.239  Sum_probs=107.4

Q ss_pred             EecCCcEEEEEEeecCC--CCCCceEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        119 FEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      +..|++++|.|.+.+..  |. ...|.|++++..+.....      ....+ .....|.|..++.+|+|.|+|.+ .+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~s~L~I~~~~~~D~g~Y~C~~-~~~~  256 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDP-EVQFSWFVDDVEVHTAQTQPREEQFNSTF-RSVSELPIMHQDWLNGKEFKCRV-NSAA  256 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCC-ccEEEEEECCccccCcccCCCCcccCCcE-EEEEEEEechHhccCCCEEEEEE-ecCC
Confidence            66799999999998872  21 358999999866532100      01111 33457899999999999999999 6663


Q ss_pred             CCCCCceeeee--EEEecceeeeec-eeEEeeCCeEEEEEEEecC-C-CCcEEEEECCeeeeccCCeeeeecCCCC-CCc
Q psy15235        191 TNTTPLAQADF--DVIMKPTAKLVE-TLTVIEGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTA  264 (323)
Q Consensus       191 ~~~~~~~~~~l--~v~~~p~~~~~~-~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~  264 (323)
                      ........+.+  .+..+|.+.+.. ......|+.++|.|.+.|. | .+.++|++||..+..... .......++ ...
T Consensus       257 ~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~-~~~~~~~dgty~~  335 (376)
T 2aty_A          257 FPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKN-TQPIMNTNESYFV  335 (376)
T ss_pred             CCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEe-CCceECCCCCEEE
Confidence            32222222222  344466665332 2233458899999999886 3 458999999987642111 111100111 123


Q ss_pred             ceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        265 NSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       265 ~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.|.|.....+|.|.|+|.|.|..
T Consensus       336 ~s~L~i~~~~~~~~~~YtC~v~h~~  360 (376)
T 2aty_A          336 YSKLNVQKSNWEAGNTFTCSVLHEG  360 (376)
T ss_pred             EEEEEEcHHHhCCCCcEEEEEEeCC
Confidence            4678888888888999999999987

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.67  E-value=1.3e-15  Score=118.32  Aligned_cols=162  Identities=15%  Similarity=0.201  Sum_probs=99.7

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Ccccee---e----------ccCcceEEEeeeeCCeEEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQ---S----------SVDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~---~----------~~~~~~~~~~~~~~~~~~l~   83 (323)
                      ..+..+.++.+.+|++|+|.|.+.+    .+.+.|+|+  |.....   .          ....+..+..+...+...|.
T Consensus         2 v~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   81 (210)
T 3d9a_H            2 VQLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLD   81 (210)
T ss_dssp             CEEEEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred             ceEecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEE
Confidence            3566777889999999999999553    378999995  322210   0          01122222222234556788


Q ss_pred             Eeeccc--CcceEEEeeccCCc---cceeeeeee--CCceeE------EecCCcEEEEEEeecCCCCCCc-eEEEEECCe
Q psy15235         84 IHEAIL--ESGYVQSSLFIPRM---NAITGNYDI--EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNK  149 (323)
Q Consensus        84 i~~~~~--~G~Y~C~~~~~~~~---~~~~~~~~~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~  149 (323)
                      |.+++.  +|.|+|.+.+....   ..+.+....  .|.+..      +..|+.++|.|.+.+..|  .+ .+.|++++.
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~v~W~~~~~  159 (210)
T 3d9a_H           82 LNSVTTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP--EPVTVTWNSGSL  159 (210)
T ss_dssp             ECSCCGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBS--SCCEEEEGGGTB
T ss_pred             ECCCCcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEec--CCcEEEEeeCCc
Confidence            887765  99999999875311   111111000  122221      347899999999998733  56 999999987


Q ss_pred             ecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        150 SITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       150 ~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+.....    ..+.+ .....|.|.+...+| |.|+|.| .|.
T Consensus       160 ~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~-g~Y~C~a-~n~  200 (210)
T 3d9a_H          160 SSGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNV-AHP  200 (210)
T ss_dssp             CTTEEECCCEEETTEE-EEEEEEEEEGGGTTT-SCCEEEE-EEG
T ss_pred             ccceEEcCCccCCCcE-EEEEEEEEcHHHcCC-CcEEEEE-EeC
Confidence            6432000    01111 234568888887766 9999999 666

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.67  E-value=1.8e-15  Score=121.23  Aligned_cols=157  Identities=15%  Similarity=0.220  Sum_probs=100.5

Q ss_pred             eeceEEecCCcEEEEEEe--ccCceEEEEEcC--ccceee----------ccCcceEEEeeeeCCeEEEEEeecc--cCc
Q psy15235         28 FGDTEIMEGAPINISCIL--TIFEQVKWQLNG--RNINQS----------SVDSGFAATANLTEDNFKYSIHEAI--LES   91 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g--~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~--~~G   91 (323)
                      +..+.+.+|++|+|.|.+  .+.+.+.|+|..  ......          ....+.....+.......|.|.+++  |+|
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG   89 (256)
T 3tf7_C           10 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSA   89 (256)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCS
T ss_pred             CceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCE
Confidence            456889999999999994  456899999942  221110          0112222222344667788888875  499


Q ss_pred             ceEEEeeccCCcc--------ceee------------------------eeeeCCceeEEecCCcEEEEEEeecCCCCCC
Q psy15235         92 GYVQSSLFIPRMN--------AITG------------------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDD  139 (323)
Q Consensus        92 ~Y~C~~~~~~~~~--------~~~~------------------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~  139 (323)
                      .|+|.+.+..+..        .+.+                        .+...+....+.+|++++|.|.+.+..    
T Consensus        90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~----  165 (256)
T 3tf7_C           90 VYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNSH----  165 (256)
T ss_dssp             EEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSCC----
T ss_pred             EEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCCc----
Confidence            9999998754311        1111                        122244555677899999999998754    


Q ss_pred             ceEEEEECC--eeccc-----------cccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        140 YQIVWYKGN--KSITE-----------ATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       140 ~~i~W~~~~--~~~~~-----------~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +.+.|+|..  .....           .....+++.     .....|.|.+++.+|+|.|+|.+ .+.
T Consensus       166 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~n~  232 (256)
T 3tf7_C          166 NYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCAS-SDA  232 (256)
T ss_dssp             SEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEE-EEE
T ss_pred             eEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEe-cCC
Confidence            589999832  11110           000123332     23458999999999999999999 554

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.67  E-value=1.1e-14  Score=114.13  Aligned_cols=164  Identities=12%  Similarity=0.201  Sum_probs=101.1

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+..+.++.+.+|++|+|.|.+.+    .+.+.|+|+.  ..+...              ....+..+..+...+...|
T Consensus         2 ~~v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (223)
T 1dee_B            2 VQLVESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYL   81 (223)
T ss_dssp             CEEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEE
T ss_pred             ceEEcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEE
Confidence            3566778889999999999999543    3689999953  222110              0112222222223456788


Q ss_pred             EEeeccc--CcceEEEeeccCC----c--cceeeeeee------CCceeE------EecCCcEEEEEEeecCCCCCCc-e
Q psy15235         83 SIHEAIL--ESGYVQSSLFIPR----M--NAITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-Q  141 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~~----~--~~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~  141 (323)
                      .|.+++.  +|.|+|.+.+..+    .  ......+.+      .|.+..      +..|+.++|.|.+.+..|  .+ .
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~  159 (223)
T 1dee_B           82 QMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLP--DSIT  159 (223)
T ss_dssp             EECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBS--SCCE
T ss_pred             EECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeC--CCeE
Confidence            8887764  9999999987542    1  000011222      222222      237899999999998744  44 9


Q ss_pred             EEEEE-CCeecccccc-----ccCcEEeceeEEEEeeeec--CCCeeEEEEEEcCCC
Q psy15235        142 IVWYK-GNKSITEATE-----LSGRLTQSKDSITIRKTTV--DDAGQYSCRLIDPKS  190 (323)
Q Consensus       142 i~W~~-~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~~  190 (323)
                      +.|++ +|..+.....     .++.+ .....|.|.....  +|.|.|+|.+ .|..
T Consensus       160 v~W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~~d~g~y~C~v-~n~~  214 (223)
T 1dee_B          160 FSWKYKNNSDISSTRGFPSVLRGGKY-AATSQVLLPSKDVAQGTNEHVVCKV-QHPN  214 (223)
T ss_dssp             EEEEETTSCBCSCEEECCCEEETTEE-EEEEEEEEECTTTTSTTCCEEEEEE-ECTT
T ss_pred             EEeEccCCCccceeEECCccccCCeE-EEEEEEEEcHHHhccCCCCEEEEEE-EeCC
Confidence            99999 8877643000     01222 2245677776665  7789999999 7763

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.66  E-value=6.3e-15  Score=117.73  Aligned_cols=174  Identities=15%  Similarity=0.267  Sum_probs=108.7

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc--------cccccCcEEe-----ceeEEEEeeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE--------ATELSGRLTQ-----SKDSITIRKTT  174 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~--------~~~~~~~~~~-----~~~~l~i~~~~  174 (323)
                      .|....+.+|++++|.|.+.. +   .+.+.||++.  ..   +..        ......|+..     ....|.|.+++
T Consensus         9 ~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   84 (252)
T 1oga_E            9 SPKYLFRKEGQNVTLSCEQNL-N---HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   84 (252)
T ss_dssp             SCSEEEEETTCCEEECCEECS-C---CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             cCCeEEEcCCCcEEEEEEeCC-C---CCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence            566677889999999999853 3   5799999853  11   100        0012355541     24689999999


Q ss_pred             cCCCeeEEEEEEcCCCC-CCCCceeeeeEEEe------cceeeee--ceeEEeeCCeEEEEEEEecC-CCC-cEEEEECC
Q psy15235        175 VDDAGQYSCRLIDPKST-NTTPLAQADFDVIM------KPTAKLV--ETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGN  243 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~-~~~~~~~~~l~v~~------~p~~~~~--~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~  243 (323)
                      .+|+|.|.|.+ .+... .........|.|..      +|.+.+.  ....+.+|+.++|.|.+.|. |.+ .+.|+++|
T Consensus        85 ~~D~G~Y~C~~-~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g  163 (252)
T 1oga_E           85 KNPTAFYLCAS-SSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG  163 (252)
T ss_dssp             SCCCEEEEEEE-ESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             hhhCEEEEEEE-ecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence            99999999999 55310 01111223456543      4544432  11223468999999999875 654 89999999


Q ss_pred             eeeeccCCee--e---eecCCCC-CCcceeEEEeecCcC-CCeEEEEEEeecccC
Q psy15235        244 DTYFRSQGRI--K---LSEHPEK-GTANSVLQIDEATMA-DRGNYYCHGNNVATR  291 (323)
Q Consensus       244 ~~~~~~~~~~--~---~~~~~~~-~~~~~~L~i~~v~~~-d~G~y~C~a~n~~g~  291 (323)
                      ..+.......  .   +....++ ....+.|.|...... |.|.|+|.|.|....
T Consensus       164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            8875321110  0   0000111 123456888877665 577899999998754

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.66  E-value=5.7e-16  Score=125.76  Aligned_cols=166  Identities=14%  Similarity=0.182  Sum_probs=98.7

Q ss_pred             CceEE-EeeceEEecCCcEEEEEEec--cCceEEEEEcC--cccee----ec---------cCcceEEEeeeeCCeEEEE
Q psy15235         22 DGKIT-YFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQ----SS---------VDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        22 ~~~i~-~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~----~~---------~~~~~~~~~~~~~~~~~l~   83 (323)
                      ...+. .+.++.+.+|++|+|.|.+.  +.+.+.|+|++  .....    ..         ...++........+...|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            34444 45678899999999999963  45789999964  22110    00         0011211111125567788


Q ss_pred             Eeeccc--CcceEEEeeccCC---------c-cceeeeee----eCCceeEE-------ecCCcEEEEEEeecCCCCCCc
Q psy15235         84 IHEAIL--ESGYVQSSLFIPR---------M-NAITGNYD----IEPKYKVF-------EYRVPFTLKCNVTSPPPGDDY  140 (323)
Q Consensus        84 i~~~~~--~G~Y~C~~~~~~~---------~-~~~~~~~~----~~~~~~~~-------~~g~~v~l~C~~~~~~~~~~~  140 (323)
                      |.+++.  +|.|+|.+.+..+         . ..+.+...    ..|.+.+.       ..|+.++|.|.+.+.+|. .+
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~  182 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HV  182 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSS-CE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCC-Cc
Confidence            887764  9999999987311         1 11111110    12333332       258999999999987542 37


Q ss_pred             eEEEEECCeeccccccc------------cCcEEeceeEEEEeeeecC-CCeeEEEEEEcCCC
Q psy15235        141 QIVWYKGNKSITEATEL------------SGRLTQSKDSITIRKTTVD-DAGQYSCRLIDPKS  190 (323)
Q Consensus       141 ~i~W~~~~~~~~~~~~~------------~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~  190 (323)
                      .|.|+++|..+......            +..+ .....|.|.+.... +.|.|+|.+ .|..
T Consensus       183 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~~~~YtC~v-~n~~  243 (279)
T 2wbj_D          183 ELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRY-SLSSRLRVSATFWQNPRNHFRCQV-QFYG  243 (279)
T ss_dssp             EEEEEETTEECCTTEEECSSCEESSTTSTTCCE-EEEEEEECCSTTTTCTTCEEEEEE-EECC
T ss_pred             EEEEEECCEECCCCcccccccccccccCCCCcE-EEEEEEEEChHHhccCCCEEEEEE-EeCC
Confidence            99999999887542111            1111 22335667666554 467899999 6663

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.66  E-value=3.4e-15  Score=119.15  Aligned_cols=157  Identities=13%  Similarity=0.144  Sum_probs=101.3

Q ss_pred             eeceEEecCCcEEEEEEec--cCceEEEEEcCc--cceee---------ccCcceEEEeeeeCCeEEEEEeeccc--Ccc
Q psy15235         28 FGDTEIMEGAPINISCILT--IFEQVKWQLNGR--NINQS---------SVDSGFAATANLTEDNFKYSIHEAIL--ESG   92 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g~--~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~   92 (323)
                      +..+.+.+|++|+|.|.+.  +.+.+.|+|+..  .....         ....+  +..........|.|.+++.  +|.
T Consensus        11 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~D~G~   88 (250)
T 3esu_F           11 TSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSR--FSGSGSGTDYSLTISNLEQEDIGT   88 (250)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTT--EEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCC--EEEeCCCCEEEEEEccCChhhCEE
Confidence            4567799999999999954  567999999532  11110         01111  2334456677888888764  999


Q ss_pred             eEEEeeccCCcc-----ceeee-----------------------eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEE
Q psy15235         93 YVQSSLFIPRMN-----AITGN-----------------------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVW  144 (323)
Q Consensus        93 Y~C~~~~~~~~~-----~~~~~-----------------------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W  144 (323)
                      |+|.+.+..+..     .+.+.                       ....+....+.+|++++|.|.+.+.++. .+.+.|
T Consensus        89 Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W  167 (250)
T 3esu_F           89 YFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFS-SSWMNW  167 (250)
T ss_dssp             EEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGG-GSEEEE
T ss_pred             EEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCccc-CCEEEE
Confidence            999998754321     11111                       1113334457889999999999875422 469999


Q ss_pred             EEC--Ceeccc-------------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        145 YKG--NKSITE-------------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       145 ~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      +|+  +..+..             ......|+.      .....|.|.+++.+|+|.|.|.+ .+
T Consensus       168 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-~~  231 (250)
T 3esu_F          168 VKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCAR-SG  231 (250)
T ss_dssp             EEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE-EC
T ss_pred             EEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEE-ec
Confidence            997  433211             011234444      22347999999999999999999 54

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.66  E-value=2.7e-15  Score=118.13  Aligned_cols=184  Identities=19%  Similarity=0.263  Sum_probs=111.9

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---cc-c---------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---IT-E---------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~-~---------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      +....+.+|++++|.|.+.+.... ...+.|||..  ..   +. .         .....+|+.      .....|.|.+
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (230)
T 3n9g_H            7 SGAEVRKPGASTKVSCKASGYTFT-HYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSS   85 (230)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCEEEcCCCCEEEEEEeecceec-CcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence            344668899999999999763211 4689999732  11   10 0         112245555      2345699999


Q ss_pred             eecCCCeeEEEEEEcCCCC------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecC-C-CCcEEE
Q psy15235        173 TTVDDAGQYSCRLIDPKST------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGS-P-PPTVEW  239 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W  239 (323)
                      ++.+|+|.|.|.+ .+...      .........|.|.    .+|.+. ..+...+..|+.+.|.|.+.+. | ++.+.|
T Consensus        86 v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W  164 (230)
T 3n9g_H           86 LRSEDTAVYYCAR-DWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  164 (230)
T ss_dssp             CCGGGCEEEEEEE-ECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE
T ss_pred             CChhhCEEEEEEE-ccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE
Confidence            9999999999999 54320      0011223345554    244444 2333445689999999999774 4 346999


Q ss_pred             EECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        240 RIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                        ++..+.............++ ....+.|+|.....+| |.|+|.|.|..+.    ......|.|.+
T Consensus       165 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~----~~~~~~~~v~~  225 (230)
T 3n9g_H          165 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKRVEPKS  225 (230)
T ss_dssp             --GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGT----EEEEEECCCCT
T ss_pred             --CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCC----cceEEEccCCC
Confidence              55544211000000000111 1134689999999999 9999999999855    55566665554

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.66  E-value=8.2e-15  Score=116.14  Aligned_cols=160  Identities=12%  Similarity=0.139  Sum_probs=100.9

Q ss_pred             EeeceEEecCCcEEEEEEec--c----CceEEEEEcC--ccceeec-------cCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235         27 YFGDTEIMEGAPINISCILT--I----FEQVKWQLNG--RNINQSS-------VDSGFAATANLTEDNFKYSIHEAIL--   89 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~--~----~~~v~W~~~g--~~~~~~~-------~~~~~~~~~~~~~~~~~l~i~~~~~--   89 (323)
                      .+.++.+.+|++|+|.|.+.  +    .+.+.|+|++  ..+....       ......+..........|.|.+++.  
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   86 (240)
T 1moe_A            7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADD   86 (240)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhh
Confidence            45668899999999999954  3    5689999963  3221110       0001112223345667788887754  


Q ss_pred             CcceEEEeeccCCcc-----ceeee----------eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc
Q psy15235         90 ESGYVQSSLFIPRMN-----AITGN----------YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT  152 (323)
Q Consensus        90 ~G~Y~C~~~~~~~~~-----~~~~~----------~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~  152 (323)
                      +|.|+|.+.+..+..     .+.+.          ....+....+.+|++++|.|.+.+.++. .+.+.|+++  +....
T Consensus        87 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~g~~~~  165 (240)
T 1moe_A           87 VATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIK-DTYMHWVKQRPEQGLE  165 (240)
T ss_dssp             CEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCE
T ss_pred             CEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCC-CCEEEEEEECCCCCcE
Confidence            999999998764321     11111          1112334457789999999999987621 258999995  32221


Q ss_pred             c-------------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        153 E-------------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       153 ~-------------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .             ......++.      .....|.|.+++.+|+|.|+|.+ ..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~~  219 (240)
T 1moe_A          166 WIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAP-FG  219 (240)
T ss_dssp             EEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE-CS
T ss_pred             EEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEE-Ee
Confidence            0             001234444      12367999999999999999999 53

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.65  E-value=1.3e-14  Score=114.39  Aligned_cols=164  Identities=10%  Similarity=0.183  Sum_probs=97.8

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e----------ccCcceEEEeeeeCCeEEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S----------SVDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~----------~~~~~~~~~~~~~~~~~~l~   83 (323)
                      ..+..+.++.+.+|++|+|.|.+.+    .+.+.|+|..  ..+..   .          ....+..+..+...+.+.|.
T Consensus         2 ~~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   81 (232)
T 1dn0_B            2 VQLQQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLK   81 (232)
T ss_dssp             CEEEEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred             CeEECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEE
Confidence            3566778889999999999999542    4689999953  22211   0          01122222222234567788


Q ss_pred             Eeeccc--CcceEEEeeccCC--c----cceeeeeee------CCceeE------EecC-CcEEEEEEeecCCCCCCc-e
Q psy15235         84 IHEAIL--ESGYVQSSLFIPR--M----NAITGNYDI------EPKYKV------FEYR-VPFTLKCNVTSPPPGDDY-Q  141 (323)
Q Consensus        84 i~~~~~--~G~Y~C~~~~~~~--~----~~~~~~~~~------~~~~~~------~~~g-~~v~l~C~~~~~~~~~~~-~  141 (323)
                      |.+++.  +|.|+|.+....+  .    ......+.+      .|.+..      +..| +.++|.|.+.+..|  .+ .
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P--~p~~  159 (232)
T 1dn0_B           82 LSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLP--DSIT  159 (232)
T ss_dssp             ECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBS--SCCE
T ss_pred             ECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeC--CCeE
Confidence            887764  9999999973111  1    000112222      122222      2257 99999999998643  44 9


Q ss_pred             EEEEE-CCeecccccc-----ccCcEEeceeEEEEeeeec--CCCeeEEEEEEcCCC
Q psy15235        142 IVWYK-GNKSITEATE-----LSGRLTQSKDSITIRKTTV--DDAGQYSCRLIDPKS  190 (323)
Q Consensus       142 i~W~~-~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~--~d~G~y~C~~~~~~~  190 (323)
                      +.|++ +|..+.....     ..+.+ .....|.|.....  +|.|.|+|.+ .|..
T Consensus       160 v~W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~~d~g~ytC~v-~n~~  214 (232)
T 1dn0_B          160 FSWKYKNNSDISSTRGFPSVLRGGKY-AATSQVLLPSKDVMAGTDEHVVCKV-QHPN  214 (232)
T ss_dssp             EEEEETTSCEECCEEECCCEEETTEE-EEEEEEEECTTCC---CCCEEEEEE-ECTT
T ss_pred             EEEEcCCCCceeeEEECCccccCCcE-EEEEEEEEcHHHhcccCCCeEEEEE-EeCC
Confidence            99999 8877643000     01222 2245688887776  7899999999 7763

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.65  E-value=5.8e-15  Score=115.44  Aligned_cols=163  Identities=14%  Similarity=0.167  Sum_probs=100.1

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cc---ceeec-------------cCcceEEEeeeeCCeE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RN---INQSS-------------VDSGFAATANLTEDNF   80 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~---~~~~~-------------~~~~~~~~~~~~~~~~   80 (323)
                      ..+..+.++.+.+|++|+|.|.+.+    .+.+.|+|++  ..   +....             ...+..+..+...+..
T Consensus         2 ~~v~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (220)
T 1pz5_B            2 VKVEESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSV   81 (220)
T ss_dssp             CEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEE
T ss_pred             ceEeccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeE
Confidence            3466778889999999999999542    5789999953  22   11100             0122222222234566


Q ss_pred             EEEEeeccc--CcceEEEeeccCCc-----cceeeeeee----CCceeE------EecCCcEEEEEEeecCCCCCCc-eE
Q psy15235         81 KYSIHEAIL--ESGYVQSSLFIPRM-----NAITGNYDI----EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-QI  142 (323)
Q Consensus        81 ~l~i~~~~~--~G~Y~C~~~~~~~~-----~~~~~~~~~----~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~i  142 (323)
                      .|.|.+++.  +|.|+|.+.+..+.     ......+..    .|.+..      +.+|+.++|.|.+.+..|  .+ .|
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~v  159 (220)
T 1pz5_B           82 YLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFP--EPVTV  159 (220)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBS--SCCEE
T ss_pred             EEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeC--CCeEE
Confidence            788877764  99999999876421     111111110    122221      346999999999998733  56 99


Q ss_pred             EEEECCeecc----ccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        143 VWYKGNKSIT----EATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       143 ~W~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .|++++....    ......+.+ .....|.|.+...+| |.|+|.| .|..
T Consensus       160 ~W~~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~-g~Y~C~a-~n~~  208 (220)
T 1pz5_B          160 KWNYGALSSGVRTVSSVLQSGFY-SLSSLVTVPSSTWPS-QTVICNV-AHPA  208 (220)
T ss_dssp             EEGGGTCCTTEEECCCEEETTEE-EEEEEEEECGGGTTT-SCCEEEE-EEGG
T ss_pred             EEecCCcccceEEcCCcccCCeE-EEEEEEEEcchhcCC-ceEEEEE-EECC
Confidence            9999886421    100001222 235678888887766 9999999 6763

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.64  E-value=1.6e-15  Score=123.63  Aligned_cols=157  Identities=14%  Similarity=0.182  Sum_probs=101.4

Q ss_pred             eEEecCCcEEEEEEec-cCceEEEEEcC--ccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccc--
Q psy15235         31 TEIMEGAPINISCILT-IFEQVKWQLNG--RNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNA--  105 (323)
Q Consensus        31 ~~v~~G~~v~L~C~~~-~~~~v~W~~~g--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~--  105 (323)
                      +.+.+|+.+.|.|.+. |.+.++|++++  ..+...         .+...+   +  ....|+|.|+|.+.+..+...  
T Consensus       105 ~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~---------~~~~~~---~--~~~~d~G~Y~C~a~n~~~~~~s~  170 (289)
T 3mjg_X          105 IFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVP---------YDHQRG---F--SGIFEDRSYICKTTIGDREVDSD  170 (289)
T ss_dssp             EEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCC---------EETTTE---E--EECCCSSEEEEEEEETTEEEECC
T ss_pred             EEeecCCeEEEEeEcCCCCceEEEEeCCCCCcccee---------ecCCcC---e--eeeccCcEEEEEEEeCCceeeee
Confidence            5688999999999954 56789999865  333211         011111   1  124579999999986543321  


Q ss_pred             -e--------eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-----EeceeEEEEe
Q psy15235        106 -I--------TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-----TQSKDSITIR  171 (323)
Q Consensus       106 -~--------~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~  171 (323)
                       .        .+.+...+....+.+|+.++|.|.+.+.|   .+.+.|++++.............     ......|.|.
T Consensus       171 ~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~  247 (289)
T 3mjg_X          171 AYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNE---VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIP  247 (289)
T ss_dssp             CEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCS---SBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEES
T ss_pred             eEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCC---CcceEEEcCCccCCCcccccccccCCcceEEEEEEEEc
Confidence             1        11112222234477899999999999977   78999998765433200001111     1345789999


Q ss_pred             eeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        172 KTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      ++..+|+|.|+|.| .|..+  ....+..|+|...+
T Consensus       248 ~v~~~D~G~Y~C~a-~N~~G--~~~~~~~l~v~~~~  280 (289)
T 3mjg_X          248 SAELEDSGTYTCNV-TESVN--DHQDEKAINITVVE  280 (289)
T ss_dssp             SCCSSCCEEEEEEE-EETTT--TEEEEEEEEEEEEC
T ss_pred             ccChhhCcEEEEEe-ecCCC--CceeEEEEEEEEEe
Confidence            99999999999999 77744  45566666666554

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=103.53  Aligned_cols=92  Identities=20%  Similarity=0.318  Sum_probs=74.4

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+.....++...       ...+|.|.+++.+|+|.|+|.
T Consensus         8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~   80 (100)
T 2edj_A            8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ-------EQGTLQIKNLRISDTGTYTCV   80 (100)
T ss_dssp             SCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC-------TTCCEEEESCCTTTCCEEEEE
T ss_pred             CCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc-------CCCEEEEccCCcccCEEEEEE
Confidence            44444 3445678899999999999999999999999998887555555554       356899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEccee
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      |.|..|.    ....+.|.|.+++
T Consensus        81 a~n~~g~----~~~~~~l~V~~~~  100 (100)
T 2edj_A           81 ATSSSGE----TSWSAVLDVTESG  100 (100)
T ss_dssp             EECSSCC----CBCCEEEEEESCC
T ss_pred             EEcCCCC----EEEEEEEEEecCC
Confidence            9999966    6777888887653

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.64  E-value=1.9e-15  Score=118.80  Aligned_cols=162  Identities=15%  Similarity=0.133  Sum_probs=95.5

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---ec-----------cCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---SS-----------VDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~~-----------~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+..+.++.+.+|++|+|.|.+.+    .+.+.|+|++  ..+..   ..           ...+..+..+...+...|
T Consensus         2 ~~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (227)
T 1mju_H            2 VQLQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYM   81 (227)
T ss_dssp             CEEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             ceEcCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEE
Confidence            3456677788999999999999542    4689999964  22211   00           112222222222456778


Q ss_pred             EEeeccc--CcceEEEeeccCCc---c--ceeeeee--eCCcee------EEecCCcEEEEEEeecCCCCCCc-eEEEEE
Q psy15235         83 SIHEAIL--ESGYVQSSLFIPRM---N--AITGNYD--IEPKYK------VFEYRVPFTLKCNVTSPPPGDDY-QIVWYK  146 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~~~---~--~~~~~~~--~~~~~~------~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~  146 (323)
                      .|.+++.  +|.|+|.+.+....   .  .+.+...  ..|.+.      .+..|+.++|.|.+.+..|  .+ .|.|++
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~v~W~~  159 (227)
T 1mju_H           82 QLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFP--EPVTLTWNS  159 (227)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBS--SCCEEEEGG
T ss_pred             EECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeC--CCeEEEEec
Confidence            8887765  99999999864311   1  1111100  011111      2346899999999998643  44 999999


Q ss_pred             CCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        147 GNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       147 ~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++..+.....    ..+.+ .....|.|.....+| |.|+|.| .|.
T Consensus       160 ~g~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-g~Y~C~a-~n~  203 (227)
T 1mju_H          160 GSLSSGVHTFPAVLQSDLY-TLSSSVTVTSSTWPS-QSITCNV-AHP  203 (227)
T ss_dssp             GTBCTTEEECCCEEETTEE-EEEEEEEECTTTTTT-SCCEEEE-EEG
T ss_pred             CCCcCCcEECCceecCCeE-EEEEEEEEchhhcCC-CeEEEEE-EEC
Confidence            9876432000    01112 234578888887777 9999999 665

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.64  E-value=1.5e-14  Score=115.12  Aligned_cols=160  Identities=15%  Similarity=0.168  Sum_probs=98.1

Q ss_pred             EeeceEEecCCcEEEEEEe--ccCceEEEEEcC--cc--------------ceeeccCcceEEEeeeeCCeEEEEEeecc
Q psy15235         27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLNG--RN--------------INQSSVDSGFAATANLTEDNFKYSIHEAI   88 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~g--~~--------------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   88 (323)
                      .+..+.+.+|++|+|.|.+  .+.+.+.|+|..  ..              ........+..+ .....+...|.|.+++
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~L~I~~v~   85 (246)
T 4dzb_B            7 HPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLI-NHASLTLSTLTVTSAH   85 (246)
T ss_dssp             ECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEE-EEEETTEEEEEECSCC
T ss_pred             CCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEE-EecCCCEEEEEECCCC
Confidence            4566889999999999984  356789999921  11              111101122222 2223567788888776


Q ss_pred             c--CcceEEEeeccCCc------c--ceeeeee----eCCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEEC
Q psy15235         89 L--ESGYVQSSLFIPRM------N--AITGNYD----IEPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKG  147 (323)
Q Consensus        89 ~--~G~Y~C~~~~~~~~------~--~~~~~~~----~~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~  147 (323)
                      .  +|.|+|.+.+....      .  .+.+...    ..|.+.+       +..|+.++|.|.+.+.+|. ...+.|+++
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~-~~~v~W~k~  164 (246)
T 4dzb_B           86 PEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVN  164 (246)
T ss_dssp             GGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEET
T ss_pred             HHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCC-ceEEEEEEC
Confidence            4  99999999764321      1  1111100    1222222       2348999999999986642 249999999


Q ss_pred             Ceeccccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235        148 NKSITEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPKS  190 (323)
Q Consensus       148 ~~~~~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~  190 (323)
                      |..+......            ++.+ .....|.|.....+| .|.|+|.| .|..
T Consensus       165 g~~l~~~~~~~~~~~~~~~~~~~g~~-~~~s~l~i~~~~~~d~~g~YtC~v-~~~~  218 (246)
T 4dzb_B          165 GKEVHSGVCTDPQPLKEQPALNDSRY-ALSSRLRVSATFWQNPRNHFRCQV-QFYG  218 (246)
T ss_dssp             TEEECTTEEECSSCEESSTTSTTCCE-EEEEEEEEEHHHHTCTTCEEEEEE-EECC
T ss_pred             CEECCCCcccccccccccccCCCCCE-EEEEEEEECHHHhccCCCeEEEEE-EecC
Confidence            9887651111            1112 122457888887778 99999999 6653

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.64  E-value=4.8e-15  Score=118.72  Aligned_cols=166  Identities=15%  Similarity=0.220  Sum_probs=97.1

Q ss_pred             hccCCceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeC
Q psy15235         18 SISADGKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTE   77 (323)
Q Consensus        18 ~~~~~~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~   77 (323)
                      .......+..+..+.+.+|++|+|.|...+    ...+.|+|..  +.....              ....+..+..+...
T Consensus        20 ~~~~~~~v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~   99 (256)
T 3sob_H           20 NAYAEVQLVESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSK   99 (256)
T ss_dssp             ----CCEEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGG
T ss_pred             ccccceEEEecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCC
Confidence            344566777777788999999999999542    4689999842  211110              01223333333346


Q ss_pred             CeEEEEEeeccc--CcceEEEeeccCC---------c----cceeeeee--e--CCcee------EEecCCcEEEEEEee
Q psy15235         78 DNFKYSIHEAIL--ESGYVQSSLFIPR---------M----NAITGNYD--I--EPKYK------VFEYRVPFTLKCNVT  132 (323)
Q Consensus        78 ~~~~l~i~~~~~--~G~Y~C~~~~~~~---------~----~~~~~~~~--~--~~~~~------~~~~g~~v~l~C~~~  132 (323)
                      +.+.|.|.+++.  +|.|+|.+.+..+         .    ......+.  .  .|.+.      .+..|+.++|.|.+.
T Consensus       100 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~  179 (256)
T 3sob_H          100 NTAYLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  179 (256)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEE
T ss_pred             CEEEEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEE
Confidence            777888888764  9999999975421         0    11111111  1  12222      234789999999998


Q ss_pred             cCCCCCCceEEEEECCeecccccc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        133 SPPPGDDYQIVWYKGNKSITEATE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       133 ~~~~~~~~~i~W~~~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +..|. ...+.|  ++..+.....       .++.+ .....|.|.....+| |.|+|.+ .+.
T Consensus       180 ~~~p~-~~~v~W--~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d-~~ytC~v-~~~  237 (256)
T 3sob_H          180 DYFPE-PVTVSW--NSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK  237 (256)
T ss_dssp             EEBSS-CCEEEE--GGGTBCTTEEECCCEECTTSCE-EEEEEEEEEGGGTTT-CCCEEEE-EEG
T ss_pred             EEECC-CeEEEE--CCcccCCCeEeCCceeCCCCCE-EEEEEEEECHHHcCC-ceEEEEE-EeC
Confidence            85543 468999  5544322100       11222 223568888888888 9999999 665

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.64  E-value=4.6e-15  Score=118.81  Aligned_cols=162  Identities=15%  Similarity=0.125  Sum_probs=100.6

Q ss_pred             EEeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccceeecc-------CcceEEEeeeeCCeEEEEEeecc--cC
Q psy15235         26 TYFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNINQSSV-------DSGFAATANLTEDNFKYSIHEAI--LE   90 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~--~~   90 (323)
                      ..+..+.+.+|++|+|.|.+.    +.+.+.|+|++  ........       .....+..........|.|.+++  |+
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE   86 (256)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence            345567899999999999954    45789999953  22221000       00111223344566788888775  49


Q ss_pred             cceEEEeeccCCcc-------ceeeee-----------------------ee-CCceeEEecCCcEEEEEEeecCCCCCC
Q psy15235         91 SGYVQSSLFIPRMN-------AITGNY-----------------------DI-EPKYKVFEYRVPFTLKCNVTSPPPGDD  139 (323)
Q Consensus        91 G~Y~C~~~~~~~~~-------~~~~~~-----------------------~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~  139 (323)
                      |.|+|.+.+..+..       .+.+..                       .+ .+....+.+|++++|.|.+.+.++. .
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~  165 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFS-S  165 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGG-G
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccc-c
Confidence            99999998743211       111100                       11 1122347789999999999886532 4


Q ss_pred             ceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        140 YQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       140 ~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +.+.|+|+  +..+..             .....+|+.      .....|.|.+++.+|+|.|+|.+ .+.
T Consensus       166 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-~~~  235 (256)
T 3ux9_B          166 YAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR-YID  235 (256)
T ss_dssp             SEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE-EET
T ss_pred             cEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEE-EcC
Confidence            69999986  322210             011233544      23456999999999999999999 554

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.64  E-value=2.4e-14  Score=111.95  Aligned_cols=163  Identities=15%  Similarity=0.254  Sum_probs=101.4

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccce---ee-----------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNIN---QS-----------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~---~~-----------~~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+..+.++.+.+|++|+|.|.+.+    .+.+.|+|..  ..+.   ..           ....+..+..+...+...|
T Consensus         2 ~~~~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   81 (220)
T 2fbj_H            2 VKLLESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYL   81 (220)
T ss_dssp             CEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEE
T ss_pred             ceEecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEE
Confidence            3566777889999999999999542    4689999953  2211   10           0112222222223456778


Q ss_pred             EEeeccc--CcceEEEeeccCCcc---ceeeeeee------CCceeE-----EecCCcEEEEEEeecCCCCCC--ceEEE
Q psy15235         83 SIHEAIL--ESGYVQSSLFIPRMN---AITGNYDI------EPKYKV-----FEYRVPFTLKCNVTSPPPGDD--YQIVW  144 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~~~~---~~~~~~~~------~~~~~~-----~~~g~~v~l~C~~~~~~~~~~--~~i~W  144 (323)
                      .|.+++.  +|.|+|.+.+.....   .....+.+      .|.+..     +..|+.++|.|.+.+..|  .  +.|.|
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P--~~~~~v~W  159 (220)
T 2fbj_H           82 QMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFP--SGTMNVTW  159 (220)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBS--CCCEEEEE
T ss_pred             EECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEEC--CCcEEEEE
Confidence            8887764  999999998754321   00011112      122222     246899999999998744  4  79999


Q ss_pred             EECCeeccccc-----cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        145 YKGNKSITEAT-----ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       145 ~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++++..+....     ..++.+ .....|.|.+...+|.|.|+|.+ .|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~ytC~v-~n~  207 (220)
T 2fbj_H          160 GKSGKDITTVNFPPALASGGRY-TMSNQLTLPAVECPEGESVKCSV-QHD  207 (220)
T ss_dssp             SCCCSSCEEEECCCEECSSSCE-EEEEEEEECGGGSCTTCEEEEEE-EET
T ss_pred             ecCCEecceEecCceECCCCCE-EEEEEEEECHHHcCCCCeEEEEE-EcC
Confidence            99987652100     011222 22346888888888999999999 666

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.64  E-value=6.8e-16  Score=106.41  Aligned_cols=101  Identities=24%  Similarity=0.396  Sum_probs=66.0

Q ss_pred             eeeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        199 ADFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       199 ~~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      +.+.+..+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..........       ....|.|.++..+|
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D   75 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD-------GNRNLTIRRVRKED   75 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET-------TTTEEEECSCCGGG
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC-------CCcEEEEeecCccc
Confidence            345555666665 4556778899999999999999999999999998876443322222       35789999999999


Q ss_pred             CeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        278 RGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       278 ~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      +|.|+|.|.|..|.    ....+.|.|.+++..
T Consensus        76 ~G~Y~C~a~n~~g~----~~~~~~l~V~~~~~~  104 (108)
T 3kvq_A           76 EGLYTCQACSVLGC----AKVEAFFIIEGAQEK  104 (108)
T ss_dssp             CEEEEEEEC----C----EEEEEEEEEEC----
T ss_pred             CEEEEEEEEeCCCc----eEEEEEEEEeCCCcc
Confidence            99999999999965    888889999887654

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.64  E-value=1.3e-14  Score=115.12  Aligned_cols=160  Identities=13%  Similarity=0.152  Sum_probs=100.8

Q ss_pred             EEeeceEEecCCcEEEEEEec--cCceEEEEEcC--ccceeec---------cCcceEEEeeeeCCeEEEEEeecc--cC
Q psy15235         26 TYFGDTEIMEGAPINISCILT--IFEQVKWQLNG--RNINQSS---------VDSGFAATANLTEDNFKYSIHEAI--LE   90 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~g--~~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~--~~   90 (323)
                      ..+..+.+.+|++|+|.|.+.  +.+.+.|+|+.  ..+....         ...+  +..........|.|.+++  |+
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            6 QSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSR--FSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTT--EEEEEETTEEEEEESSCCGGGC
T ss_pred             EcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCC--EEEecCCCEEEEEECCCChHHC
Confidence            345678899999999999954  45799999953  2221100         1111  222234566778888776  49


Q ss_pred             cceEEEeeccCCcc-----ceeee----------------eee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-
Q psy15235         91 SGYVQSSLFIPRMN-----AITGN----------------YDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-  147 (323)
Q Consensus        91 G~Y~C~~~~~~~~~-----~~~~~----------------~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-  147 (323)
                      |.|+|.+.+..+..     .+.+.                +.+ .+....+.+|++++|.|.+.+.+.. .+.+.|+|+ 
T Consensus        84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~k~~  162 (242)
T 2znx_A           84 GMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSIT-SDYXSXIRKF  162 (242)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGG-GSCEEEEEEC
T ss_pred             EEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccC-CcceeeEeeC
Confidence            99999998764321     11110                011 1122347789999999999886521 368999994 


Q ss_pred             -Ceeccc------------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        148 -NKSITE------------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       148 -~~~~~~------------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                       +..+..            ......++.      .....|.|.+++.+|+|.|+|.+ .+.
T Consensus       163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~~~  222 (242)
T 2znx_A          163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCAN-XDG  222 (242)
T ss_dssp             TTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEE-TTS
T ss_pred             CCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEec-cCC
Confidence             322210            001234444      12458999999999999999999 664

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.63  E-value=3.3e-15  Score=101.19  Aligned_cols=94  Identities=27%  Similarity=0.349  Sum_probs=74.0

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....++....  .+  ...+|.|.++..+|+|.|+|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~--~~--~~~~L~i~~~~~~D~G~Y~C~   80 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA--EG--GLCRLRILAAERGDAGFYTCK   80 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEEC--GG--GEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEEC--CC--CEEEEEEccCCcCCCEEEEEE
Confidence            44443 34456788999999999999999999999999998876655554431  11  235899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEcce
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      |.|..|.    ....+.|.|.++
T Consensus        81 a~N~~g~----~~~~~~l~V~~~   99 (99)
T 1u2h_A           81 AVNEYGA----RQCEARLEVRGE   99 (99)
T ss_dssp             EEETTEE----EEEEEEEEEEC-
T ss_pred             EEECCCc----eeEEEEEEEECC
Confidence            9999966    778888888763

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.63  E-value=2.1e-14  Score=114.14  Aligned_cols=162  Identities=15%  Similarity=0.222  Sum_probs=97.0

Q ss_pred             EEeeceEEecCCcEEEEEE-eccCceEEEEEc--Cccc------------eeeccCcceEEEeeeeCCeEEEEEeeccc-
Q psy15235         26 TYFGDTEIMEGAPINISCI-LTIFEQVKWQLN--GRNI------------NQSSVDSGFAATANLTEDNFKYSIHEAIL-   89 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~-~~~~~~v~W~~~--g~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-   89 (323)
                      ..+..+.+.+|++|+|.|. ..+.+.+.|+|.  +...            .......++........+.+.|.|.+++. 
T Consensus         7 ~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~   86 (245)
T 4ei6_B            7 QIPSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALE   86 (245)
T ss_dssp             EECSEEEEETTCCEEEEEECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGG
T ss_pred             eCCceEEecCCCCEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHh
Confidence            3456688999999999996 345679999992  2211            11111101111111224567788887754 


Q ss_pred             -CcceEEEeeccCCc------cceeeeee------eCCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECCe
Q psy15235         90 -ESGYVQSSLFIPRM------NAITGNYD------IEPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNK  149 (323)
Q Consensus        90 -~G~Y~C~~~~~~~~------~~~~~~~~------~~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~  149 (323)
                       +|.|+|.+.+....      ......+.      ..|...+       +..|+.++|.|.+.+.+|. ...+.|+++|.
T Consensus        87 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~-~~~v~W~~~g~  165 (245)
T 4ei6_B           87 DSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGK  165 (245)
T ss_dssp             GCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETTE
T ss_pred             HCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCC-CeEEEEEECCE
Confidence             99999999853211      11111111      1222222       2348999999999885541 24899999998


Q ss_pred             eccccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235        150 SITEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPKS  190 (323)
Q Consensus       150 ~~~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~  190 (323)
                      .+......            ++.+ .....|.|.....+| .|.|+|.+ .+..
T Consensus       166 ~l~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~~g~ytC~v-~~~~  217 (245)
T 4ei6_B          166 EVHSGVCTDPQPLKEQPALNDSRY-ALSSRLRVSATFWQNPRNHFRCQV-QFYG  217 (245)
T ss_dssp             EECTTEEECSSCEESSTTSTTCCE-EEEEEEEEEHHHHSCTTCEEEEEE-EECC
T ss_pred             ECCCCcccccccccccccCCCCCE-EEEEEEEEcHHHhccCCCeEEEEE-EECC
Confidence            87651111            1112 223457888877777 99999999 5553

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.63  E-value=4.7e-17  Score=126.78  Aligned_cols=171  Identities=16%  Similarity=0.276  Sum_probs=104.3

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc------cccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |....+.+|++++|.|.+.+.+|.+.+.|.| + +..+....      .+.+++ .....|.|.+++.+|+|.|+|.+ .
T Consensus        11 P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~-~~~~~L~I~~~~~~D~g~Y~C~~-~   86 (214)
T 1ow0_A           11 PALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCY-SVSSVLPGCAEPWNHGKTFTCTA-A   86 (214)
T ss_dssp             CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCC-CEEEECTTTHHHHHHTCEEEEEE-C
T ss_pred             cChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcE-EEEEEEEEeHHHcCCCCeEEEEE-e
Confidence            4444467899999999999876421158999 4 43332100      111222 23456888888889999999999 6


Q ss_pred             CCCCCCCCceeeee---EEEecceeeeec--eeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCe-eeeecCC
Q psy15235        188 PKSTNTTPLAQADF---DVIMKPTAKLVE--TLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGR-IKLSEHP  259 (323)
Q Consensus       188 ~~~~~~~~~~~~~l---~v~~~p~~~~~~--~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~-~~~~~~~  259 (323)
                      +....  ......+   .+..+|.+.+..  ...+..|+.+.|.|.+.|. |+ +.+.|++||..+...... .......
T Consensus        87 ~~~~~--~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~  164 (214)
T 1ow0_A           87 YPESK--TPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEP  164 (214)
T ss_dssp             CSSCS--SCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECS
T ss_pred             cCCCC--CceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccc
Confidence            66332  2222233   223466554322  2235678999999999885 54 489999999887543111 0011100


Q ss_pred             --CCC--CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        260 --EKG--TANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       260 --~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                        .++  ...+.|.|.....+|.|.|+|.|.|..-
T Consensus       165 ~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          165 SQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             CSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             cCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence              111  1234566666655668999999999873

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.63  E-value=1.2e-14  Score=112.41  Aligned_cols=165  Identities=19%  Similarity=0.300  Sum_probs=99.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc------cccccCcEE-e------ceeEEEEeeeecCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE------ATELSGRLT-Q------SKDSITIRKTTVDD  177 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~------~~~~~~~~~-~------~~~~l~i~~~~~~d  177 (323)
                      .|....+.+|++++|.|.+.+..    ..+.|||..  .....      .....+|+. .      ....|.|.+++.+|
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~----~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            7 SPSALSLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCC----SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             CCCeEEEccCCcEEEEEEEeCCC----eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            45666788999999999998754    379999843  21110      011245554 1      23589999999999


Q ss_pred             CeeEEEEEEcCCCC---------CCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeee
Q psy15235        178 AGQYSCRLIDPKST---------NTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTY  246 (323)
Q Consensus       178 ~G~y~C~~~~~~~~---------~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~  246 (323)
                      +|.|.|.+ .+..+         .........|.|...+....++...+..+ .+.|.|.+.|. |. +.+.|+++ ..+
T Consensus        83 ~G~Y~C~~-~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l  159 (207)
T 1ypz_E           83 SGTYFCAA-DTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKI  159 (207)
T ss_dssp             CEEEEEEE-ECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEE
T ss_pred             CEEEEEEE-ecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-Ccc
Confidence            99999999 55421         00111234666664211111122222222 37999999765 54 68999999 665


Q ss_pred             eccCCeeeeecCCCCCCcceeEEEeecCc-CCCeEEEEEEeecccC
Q psy15235        247 FRSQGRIKLSEHPEKGTANSVLQIDEATM-ADRGNYYCHGNNVATR  291 (323)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~y~C~a~n~~g~  291 (323)
                      ..........       ....+.+..... +|.|.|+|.|.|..+.
T Consensus       160 ~~~~~~~~~~-------~~g~y~~~~~~~~~~~~~ytC~v~~~~~~  198 (207)
T 1ypz_E          160 VEFDPAIVIS-------PSGKYSAVKLGQYGDSNSVTCSVQHNSET  198 (207)
T ss_dssp             EECCCEEEEC-------TTSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred             cCCccceEEc-------CCCcEEEEEeecccCCCcEEEEEEECCcc
Confidence            4322222111       123344434444 6789999999998743

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.63  E-value=1.2e-14  Score=117.44  Aligned_cols=161  Identities=12%  Similarity=0.117  Sum_probs=96.3

Q ss_pred             EeeceEEecCCcEEEEEEec-cCceEEEEEc--Cccceeec------------cCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235         27 YFGDTEIMEGAPINISCILT-IFEQVKWQLN--GRNINQSS------------VDSGFAATANLTEDNFKYSIHEAIL--   89 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~--g~~~~~~~------------~~~~~~~~~~~~~~~~~l~i~~~~~--   89 (323)
                      .+..+.+.+|++|+|.|.+. +.+.+.|+|.  +.......            ...++........++..|.|.+++.  
T Consensus        33 ~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D  112 (270)
T 3qib_D           33 TPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGD  112 (270)
T ss_dssp             ECSEEEEETTSCEEEEEECCTTCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGG
T ss_pred             CCCeEEEcCCCCEEEEEEecCCCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhH
Confidence            45668899999999999943 5679999993  22211100            0000111111234567788887764  


Q ss_pred             CcceEEEeeccCCc------cceeeeeee------CCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECCee
Q psy15235         90 ESGYVQSSLFIPRM------NAITGNYDI------EPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKS  150 (323)
Q Consensus        90 ~G~Y~C~~~~~~~~------~~~~~~~~~------~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~  150 (323)
                      +|.|+|.+.+....      ......+..      .|...+       +..|+.++|.|.+.+..|. ...+.|+++|..
T Consensus       113 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W~k~g~~  191 (270)
T 3qib_D          113 SALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGKE  191 (270)
T ss_dssp             CEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETTEE
T ss_pred             CeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCC-CeEEEEEECCEE
Confidence            99999999853211      111111111      232222       2248999999999984431 248999999988


Q ss_pred             ccccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235        151 ITEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPKS  190 (323)
Q Consensus       151 ~~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~  190 (323)
                      +......            ++.+ .....|.|.....+| .|.|+|.+ .+..
T Consensus       192 l~~~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~~g~YtC~v-~~~~  242 (270)
T 3qib_D          192 VHSGVCTDPQPLKEQPALNDSRY-ALSSRLRVSATFWQNPRNHFRCQV-QFYG  242 (270)
T ss_dssp             ECTTEEECSSCEESCTTSSSCCE-EEEEEEEEEHHHHHSTTCEEEEEE-EECC
T ss_pred             CCCCcccccccccccccCCCCCE-EEEEEEEEcHHHhccCCCeEEEEE-EecC
Confidence            8642111            1112 223457777777777 99999999 6653

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.63  E-value=1.3e-14  Score=116.48  Aligned_cols=158  Identities=20%  Similarity=0.280  Sum_probs=95.1

Q ss_pred             EeeceEEecCCcEEEEEEec--cCceEEEEEc--Ccccee---ec-----------cCcceEEEeeeeCCeEEEEEeecc
Q psy15235         27 YFGDTEIMEGAPINISCILT--IFEQVKWQLN--GRNINQ---SS-----------VDSGFAATANLTEDNFKYSIHEAI   88 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~--g~~~~~---~~-----------~~~~~~~~~~~~~~~~~l~i~~~~   88 (323)
                      .+..+.+.+|++|+|.|.+.  +.+.+.|+|.  +.....   ..           ...+.....+.......|.|.+++
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   87 (259)
T 3omz_A            8 RTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLI   87 (259)
T ss_dssp             ---CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCC
T ss_pred             CCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCC
Confidence            35668899999999999954  4578999993  222111   00           011222222233455667777765


Q ss_pred             --cCcceEEEeeccCCcc-------ceee---------------------eeeeCCceeEEecCCcEEEEEEeecCCCCC
Q psy15235         89 --LESGYVQSSLFIPRMN-------AITG---------------------NYDIEPKYKVFEYRVPFTLKCNVTSPPPGD  138 (323)
Q Consensus        89 --~~G~Y~C~~~~~~~~~-------~~~~---------------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~  138 (323)
                        |+|.|+|.+.+..+..       .+.+                     .+...+....+.+|++++|.|.+.+..+  
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~--  165 (259)
T 3omz_A           88 ENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWW--  165 (259)
T ss_dssp             GGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCS--
T ss_pred             cccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccC--
Confidence              4999999998754310       1111                     1122444456788999999999887533  


Q ss_pred             CceEEEEECC--eeccc--------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        139 DYQIVWYKGN--KSITE--------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       139 ~~~i~W~~~~--~~~~~--------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .+.+.|+|.+  ..+..        .....+++.      .....|.|.+++.+|+|.|.|.+.
T Consensus       166 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  229 (259)
T 3omz_A          166 SYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALG  229 (259)
T ss_dssp             SCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEE
T ss_pred             CceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEe
Confidence            6899999843  11110        001123443      224569999999999999999993

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.63  E-value=1.8e-15  Score=103.09  Aligned_cols=88  Identities=18%  Similarity=0.240  Sum_probs=68.8

Q ss_pred             eeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCe-eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235        218 IEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR-IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN  296 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~  296 (323)
                      ..++.+.|.|.+.|+|.|.+.|+++|..+..+... ..+.. .......++|.|.++..+|+|.|+|.|.|..|.    .
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~----~   88 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHV-TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK----D   88 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEE-ECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE----E
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEe-cCCcEEEEEEEECCCCcccCEEEEEEEEeCCCc----E
Confidence            45788999999999999999999999988755321 11111 111123567999999999999999999999966    8


Q ss_pred             eeEEEEEEcceecC
Q psy15235        297 EAFVYVRVKGKSFG  310 (323)
Q Consensus       297 ~~~~~l~v~~~~~~  310 (323)
                      ...+.|.|.+.|.+
T Consensus        89 ~~~~~l~V~~~P~~  102 (103)
T 1wwb_X           89 EKQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEEECCSCCCCC
T ss_pred             eEEEEEEECCCCCC
Confidence            89999999887753

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.63  E-value=9.8e-16  Score=119.64  Aligned_cols=150  Identities=13%  Similarity=0.224  Sum_probs=89.0

Q ss_pred             EecCCcEEEEEEec-----c-CceEEEEEcCccceeeccCcceEEEeeee----CCeEEEEEeecc--cCcceEEEeecc
Q psy15235         33 IMEGAPINISCILT-----I-FEQVKWQLNGRNINQSSVDSGFAATANLT----EDNFKYSIHEAI--LESGYVQSSLFI  100 (323)
Q Consensus        33 v~~G~~v~L~C~~~-----~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~--~~G~Y~C~~~~~  100 (323)
                      +.+|++++|.|.+.     + .+.++|+|++..+....    ........    .....|.|.+++  |+|.|+|.+.+.
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~   98 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ----TQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNK   98 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCE----EEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEET
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcc----cccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECC
Confidence            78999999999943     2 26899999997664321    00000000    112356676654  499999999887


Q ss_pred             CCccceeeee----e--eCCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc------cCcEE
Q psy15235        101 PRMNAITGNY----D--IEPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL------SGRLT  162 (323)
Q Consensus       101 ~~~~~~~~~~----~--~~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~------~~~~~  162 (323)
                      .........+    .  ..|.+.+.      ..|+.++|.|.+.+..|. ...|.|+++|..+......      ++.+ 
T Consensus        99 ~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~k~g~~~~~~~~~~~~~~~~gt~-  176 (218)
T 2rgs_A           99 DLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPG-DISVEWTSNGHTEENYKDTAPVLDSDGSY-  176 (218)
T ss_dssp             TCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSS-CCEEEEEETTEEECCEEECCCEECTTSCE-
T ss_pred             cCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCC-CcEEEEEECCEeccCceecccEECCCCCE-
Confidence            5432111111    1  13333222      148999999999985431 2499999999877431110      0011 


Q ss_pred             eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        163 QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       163 ~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .....|.+.....+|.|.|+|.| .|.
T Consensus       177 ~~~s~l~v~~~~~~d~g~YtC~a-~n~  202 (218)
T 2rgs_A          177 FIYSKLNMKTSKWEKTDSFSCNV-RHE  202 (218)
T ss_dssp             EEEEEEEEEHHHHHHCSCEEEEE-ECT
T ss_pred             EEEEEEEECHHHcCCCCeEEEEE-EcC
Confidence            11223445444445699999999 676

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=3.5e-15  Score=103.85  Aligned_cols=99  Identities=24%  Similarity=0.193  Sum_probs=77.5

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+... .++.+..  .  .....|.|.+++.+|+|.|+|.
T Consensus         7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~--~--~~~~~L~I~~v~~~D~G~Y~C~   81 (114)
T 2cqv_A            7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-EHMKVEN--S--ENGSKLTILAARQEHCGCYTLL   81 (114)
T ss_dssp             CCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS-SSEEEEE--C--SSEEEEEETTCCTTTCEEEEEE
T ss_pred             CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCC-CCEEEEE--c--CCEEEEEECCCChhcCEEEEEE
Confidence            34333 445677889999999999999999999999999887643 3444441  1  1367899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKGKSFGYDR  313 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~~~~~~~~  313 (323)
                      |.|..|.    ....+.|.|.+.|.+...
T Consensus        82 a~N~~g~----~~~~~~l~V~~~p~~P~~  106 (114)
T 2cqv_A           82 VENKLGS----RQAQVNLTVVDKPDPPAG  106 (114)
T ss_dssp             EECSSCE----EECCEEEEEECSCSCCCC
T ss_pred             EEECCCc----EEEEEEEEEECCCCCCCC
Confidence            9999965    777888888877665543

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.62  E-value=6e-15  Score=114.21  Aligned_cols=148  Identities=12%  Similarity=0.201  Sum_probs=86.3

Q ss_pred             ecCCcEEEEEEecc------CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEE---eeccc---CcceEEEeeccC
Q psy15235         34 MEGAPINISCILTI------FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSI---HEAIL---ESGYVQSSLFIP  101 (323)
Q Consensus        34 ~~G~~v~L~C~~~~------~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~---~G~Y~C~~~~~~  101 (323)
                      .+|++++|.|.+.+      ...++|+|+|..+.....  .  ......++.+.+..   ....+   +|.|+|.+.+..
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~--~--~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~   91 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT--K--PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA   91 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE--C--CCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCccc--C--CceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCc
Confidence            79999999999432      239999999976654210  0  00011133333221   12334   899999999876


Q ss_pred             Cccceeeee----ee--CCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-e-----
Q psy15235        102 RMNAITGNY----DI--EPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-Q-----  163 (323)
Q Consensus       102 ~~~~~~~~~----~~--~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~-----  163 (323)
                      +.......+    .+  .|.+.+.      ..|..++|.|.+.+.+|. ...|.|+++|..+....  ..+.. .     
T Consensus        92 ~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~-~~~v~W~k~g~~~~~~~--~~~~~~~~~gt~  168 (207)
T 1l6x_A           92 LPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPS-DIAVEWESNGQPENNYK--TTPPVLDSDGSF  168 (207)
T ss_dssp             SSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS-CCEEEEEETTEEECCEE--ECCCEECTTSCE
T ss_pred             CCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECC-CeEEEEEECCeeccCcc--ccCceECCCCCE
Confidence            543221111    11  2333321      135669999999986531 35999999998775311  11111 1     


Q ss_pred             -ceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        164 -SKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       164 -~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                       ....|.+.....+|.|.|+|.| .|.
T Consensus       169 ~~~s~l~i~~~~~~~~g~YtC~a-~n~  194 (207)
T 1l6x_A          169 FLYSKLTVDKSRWQQGNVFSCSV-MHE  194 (207)
T ss_dssp             EEEEEEEEEHHHHHTTCCEEEEE-ECT
T ss_pred             EEEEEEEECHHHcCCCCEEEEEE-EcC
Confidence             1223445555456799999999 676

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.62  E-value=3.1e-15  Score=101.47  Aligned_cols=94  Identities=24%  Similarity=0.343  Sum_probs=73.1

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+........... . .  ....|.|.++..+|+|.|+|.
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~-~-~--~~~~L~i~~v~~~D~G~Y~C~   80 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVS-E-K--GLHSLIFEVVRASDAGAYACV   80 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEE-T-T--TEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEc-C-C--CeEEEEECCCCcccCEEEEEE
Confidence            45443 44566788999999999999999999999999998865433222221 1 1  236899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEcce
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      |.|..|.    ....+.|.|.++
T Consensus        81 a~n~~g~----~~~~~~l~V~~~   99 (100)
T 2kdg_A           81 AKNRAGE----ATFTVQLDVLAK   99 (100)
T ss_dssp             EEETTEE----EEEEEEEEEECC
T ss_pred             EEcCCCe----EEEEEEEEEEec
Confidence            9999966    788888888765

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.62  E-value=7.4e-15  Score=117.60  Aligned_cols=181  Identities=18%  Similarity=0.251  Sum_probs=106.3

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccc-------------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITE-------------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~-------------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ...+.+|++++|.|.+.+.... ...+.|||..  .....             ...+.+|+.      .....|+|.+++
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (256)
T 3sob_H           32 GGLVQPGGSLRLSCAASGFTFT-NSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR  110 (256)
T ss_dssp             CCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             cEEEcCCCCEEEEEEeeccccC-CCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence            3457889999999999763211 4689999732  11100             112345555      234569999999


Q ss_pred             cCCCeeEEEEEEcCCCC---------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEec-CC-CCcEE
Q psy15235        175 VDDAGQYSCRLIDPKST---------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVG-SP-PPTVE  238 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~---------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g-~p-~~~~~  238 (323)
                      .+|+|.|.|.+ .+..+         .........+.|.    .+|.+. ..+...+.+|+.++|.|.+.+ .| ++.+.
T Consensus       111 ~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~  189 (256)
T 3sob_H          111 AEDTAVYYCAR-GSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  189 (256)
T ss_dssp             GGGCEEEEEEE-ESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEE
T ss_pred             cccCEEEEEEE-ecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEE
Confidence            99999999999 54310         0011223345554    244444 333445678999999999976 45 34699


Q ss_pred             EEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        239 WRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      |  ++..+.............++ ....+.|+|.....+| |.|+|.|.|..+.    ......+.+.
T Consensus       190 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~----~~~~~~~~~~  250 (256)
T 3sob_H          190 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN----TKVDKKVEPK  250 (256)
T ss_dssp             E--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT----EEEEEECCCC
T ss_pred             E--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCC----cceEEEeccc
Confidence            9  55443211000000000111 1234689999999999 9999999999855    4555555444

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.62  E-value=4.3e-14  Score=112.03  Aligned_cols=161  Identities=14%  Similarity=0.218  Sum_probs=96.2

Q ss_pred             EeeceEEecCCcEEEEEEec-cCceEEEEEcC--ccce------------eeccCcceEEEeeeeCCeEEEEEeeccc--
Q psy15235         27 YFGDTEIMEGAPINISCILT-IFEQVKWQLNG--RNIN------------QSSVDSGFAATANLTEDNFKYSIHEAIL--   89 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~--   89 (323)
                      .+..+.+.+|++|+|.|.+. +.+.+.|+|..  ....            ......+..+.. ...+...|.|.+++.  
T Consensus         8 ~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~D   86 (240)
T 3q5y_A            8 SPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ-FDDYHSEMNMSALELED   86 (240)
T ss_dssp             ECSEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEE-CTTSCEEEEECSCCGGG
T ss_pred             CcceeeecCCCcEEEEEEeCCCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEe-CCCCEEEEEECcCChhH
Confidence            45668899999999999943 56799999932  1111            111111222211 134567788887764  


Q ss_pred             CcceEEEeeccCC--c---c--ceeeeee----eCCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235         90 ESGYVQSSLFIPR--M---N--AITGNYD----IEPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI  151 (323)
Q Consensus        90 ~G~Y~C~~~~~~~--~---~--~~~~~~~----~~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~  151 (323)
                      +|.|+|.+.+...  .   .  .+.+...    ..|...+       +..|+.++|.|.+.+.+|. ...+.|+++|..+
T Consensus        87 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W~~~g~~l  165 (240)
T 3q5y_A           87 SAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPD-HVELSWWVNGKEV  165 (240)
T ss_dssp             CEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETTEEE
T ss_pred             CEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECC-CeEEEEEECCEEC
Confidence            9999999973211  1   1  1111110    1222222       2348999999999985432 3489999999987


Q ss_pred             cccccccCc-EE------eceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235        152 TEATELSGR-LT------QSKDSITIRKTTVDD-AGQYSCRLIDPKS  190 (323)
Q Consensus       152 ~~~~~~~~~-~~------~~~~~l~i~~~~~~d-~G~y~C~~~~~~~  190 (323)
                      ......... ..      .....|.|.....+| .|.|+|.+ .+..
T Consensus       166 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v-~~~~  211 (240)
T 3q5y_A          166 HSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQV-QFHG  211 (240)
T ss_dssp             CTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEE-EECC
T ss_pred             cCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEE-EcCC
Confidence            642111110 11      123458888888888 67999999 5553

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.62  E-value=1.1e-14  Score=114.31  Aligned_cols=162  Identities=15%  Similarity=0.205  Sum_probs=100.3

Q ss_pred             ceEEEeeceEEecCCcEEEEEEec--c--CceEEEEEcC--cccee---e-----------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILT--I--FEQVKWQLNG--RNINQ---S-----------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~--~--~~~v~W~~~g--~~~~~---~-----------~~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+..+.++.+.+|++|+|.|.+.  +  .+.+.|+|+.  ..+..   .           ....+..+..+...+...|
T Consensus         2 ~~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (225)
T 1op3_H            2 VQLVESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYL   81 (225)
T ss_dssp             CEEEEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             ceEEcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEE
Confidence            356677788999999999999954  2  5789999953  22211   0           0112222222222456778


Q ss_pred             EEeeccc--CcceEEEeeccCC-----c--c-ceeeeeee------CCceeE------EecCCcEEEEEEeecCCCCCCc
Q psy15235         83 SIHEAIL--ESGYVQSSLFIPR-----M--N-AITGNYDI------EPKYKV------FEYRVPFTLKCNVTSPPPGDDY  140 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~~-----~--~-~~~~~~~~------~~~~~~------~~~g~~v~l~C~~~~~~~~~~~  140 (323)
                      .|.+++.  +|.|+|.+.+..+     .  . .....+.+      .|.+..      +..|+.++|.|.+.+..|  .+
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P--~p  159 (225)
T 1op3_H           82 QMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP--EP  159 (225)
T ss_dssp             EECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBS--SC
T ss_pred             EECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEEC--CC
Confidence            8887764  9999999987642     1  0 00111111      122222      246899999999998743  44


Q ss_pred             -eEEEEECCeecccc--c---cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        141 -QIVWYKGNKSITEA--T---ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       141 -~i~W~~~~~~~~~~--~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                       .|.|++++..+...  .   ..++.+ .....|.|.+...+| |.|+|.| .|.
T Consensus       160 ~~v~W~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-g~Y~C~a-~n~  211 (225)
T 1op3_H          160 VTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK  211 (225)
T ss_dssp             CEEECCTTSCCTTCEECCCEECTTSCE-EEEEEEEEEGGGTTC-CCCCEEE-EEG
T ss_pred             eEEEEecCCCcCCeEecCceeCCCCCE-EEEEEEEEechhcCC-CcEEEEE-EcC
Confidence             99999998764210  0   011222 224568888888778 9999999 665

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=5.7e-15  Score=99.96  Aligned_cols=88  Identities=22%  Similarity=0.270  Sum_probs=70.4

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+...........    ......|.|.++..+|+|.|+|.|.|..|
T Consensus        11 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g   86 (99)
T 1g1c_A           11 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP----EDNVCELVIRDVTGEDSASIMVKAINIAG   86 (99)
T ss_dssp             CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE----ETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             cCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEc----CCCEEEEEECCCCcCCCEEEEEEEEECCC
Confidence            44567789999999999999999999999999998865433322210    01356899999999999999999999996


Q ss_pred             CCCCCceeEEEEEEcc
Q psy15235        291 RNSQPNEAFVYVRVKG  306 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~  306 (323)
                      .    ....+.|.|.+
T Consensus        87 ~----~~~~~~l~V~~   98 (99)
T 1g1c_A           87 E----TSSHAFLLVQA   98 (99)
T ss_dssp             E----EEEEEEEEEEC
T ss_pred             c----EEEEEEEEEec
Confidence            6    77788888865

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.62  E-value=3.2e-15  Score=104.23  Aligned_cols=94  Identities=24%  Similarity=0.387  Sum_probs=76.9

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+.....++.+....   ....+|.|.+++.+|+|.|+|.|.|..|
T Consensus        21 ~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   97 (116)
T 2kkq_A           21 KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN---TGRVTLLIKDVNKKDAGWYTVSAVNEAG   97 (116)
T ss_dssp             CCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECT---TCEEEEEEEEECGGGCEEEEEEEEETTE
T ss_pred             CCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCC---CCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence            5557788999999999999999999999999999887555566554211   1234899999999999999999999996


Q ss_pred             CCCCCceeEEEEEEcceecCc
Q psy15235        291 RNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      .    ....+.|.|...|...
T Consensus        98 ~----~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           98 V----TTCNTRLDVTARPNQT  114 (116)
T ss_dssp             E----EEEEEEEEEECCSCCC
T ss_pred             e----EEEEEEEEEeCCCCCC
Confidence            6    7788889998877653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=4.6e-15  Score=103.89  Aligned_cols=95  Identities=24%  Similarity=0.370  Sum_probs=75.4

Q ss_pred             Eecceeee----eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe
Q psy15235        204 IMKPTAKL----VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG  279 (323)
Q Consensus       204 ~~~p~~~~----~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  279 (323)
                      ..+|.+..    +....+.+|+.+.|.|.+.|+|.|.+.|++++..+..  .++.+..    ......|.|.++..+|+|
T Consensus        19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~--~~~~~~~----~~~~~~L~i~~~~~~D~G   92 (118)
T 2e7c_A           19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT--SRVHVRT----SDFDTVFFVRQAARSDSG   92 (118)
T ss_dssp             SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCC--SSCEEEE----CSSEEEEEESSCCTTTCE
T ss_pred             ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCC--CcEEEEE----CCCeEEEEECCCChhcCE
Confidence            34666643    3467788999999999999999999999999998852  3333321    113567999999999999


Q ss_pred             EEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235        280 NYYCHGNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       280 ~y~C~a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      .|+|.|.|..|.    ....+.|.|.++|
T Consensus        93 ~Y~C~a~N~~G~----~~~~~~l~V~~~P  117 (118)
T 2e7c_A           93 EYELSVQIENMK----DTATIRIRVVEKA  117 (118)
T ss_dssp             EEEEEEECSSCE----ECCEEEEEEECCC
T ss_pred             EEEEEEEeCCCe----EEEEEEEEEEcCC
Confidence            999999999965    7888899988776

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.61  E-value=2.4e-14  Score=113.99  Aligned_cols=158  Identities=16%  Similarity=0.194  Sum_probs=100.3

Q ss_pred             EeeceEEecCCcEEEEEEec--c-----CceEEEEEcC--ccceeec---------cCcceEEEeeeeCCeEEEEEeecc
Q psy15235         27 YFGDTEIMEGAPINISCILT--I-----FEQVKWQLNG--RNINQSS---------VDSGFAATANLTEDNFKYSIHEAI   88 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~--~-----~~~v~W~~~g--~~~~~~~---------~~~~~~~~~~~~~~~~~l~i~~~~   88 (323)
                      .+..+.+.+|++|+|.|.+.  +     .+.+.|+|++  ..+....         ...+  +..........|.|.+++
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~L~I~~v~   84 (247)
T 1svz_A            7 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDR--FSGSGSGTDFTLKISRVE   84 (247)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTT--EEEEEETTEEEEEESSCC
T ss_pred             cCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCc--EEeccCCCEEEEEECCCC
Confidence            45678899999999999953  3     4789999953  2221100         1112  222334566788888776


Q ss_pred             c--CcceEEEeeccCCc-----cceeee----------------eee-CCceeEEecCCcEEEEEEeecCCCCCCceEEE
Q psy15235         89 L--ESGYVQSSLFIPRM-----NAITGN----------------YDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVW  144 (323)
Q Consensus        89 ~--~G~Y~C~~~~~~~~-----~~~~~~----------------~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W  144 (323)
                      .  +|.|+|.+.+....     ..+.+.                +.+ .+....+.+|++++|.|.+.+.++. .+.+.|
T Consensus        85 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W  163 (247)
T 1svz_A           85 AEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFT-DYSMHW  163 (247)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGG-GSCEEE
T ss_pred             HHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccC-CcEEEE
Confidence            4  99999999876432     111111                111 2222347889999999999887421 468999


Q ss_pred             EECC--eecc------c-------cccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        145 YKGN--KSIT------E-------ATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       145 ~~~~--~~~~------~-------~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      +|++  ....      .       ......++.      .....|.|.+++.+|+|.|.|.+ .+
T Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~n  227 (247)
T 1svz_A          164 VKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVR-DR  227 (247)
T ss_dssp             EEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE-EE
T ss_pred             EEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEE-ec
Confidence            9963  2110      0       001234444      12468999999999999999999 55

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.61  E-value=4.4e-15  Score=101.31  Aligned_cols=95  Identities=19%  Similarity=0.274  Sum_probs=74.2

Q ss_pred             ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        205 MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       205 ~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      .+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+..  .  .....|.|.++..+|+|.|+|
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~--~--~~~~~L~i~~~~~~D~G~Y~C   81 (103)
T 3qp3_A            7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES-SKIHYTN--T--SGVLTLEILDCHTDDSGTYRA   81 (103)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEE--E--TTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCC-CCEEEEE--C--CCEEEEEEcCCCcccCEEEEE
Confidence            344444 344677889999999999999999999999999888644 3444331  0  124689999999999999999


Q ss_pred             EEeecccCCCCCceeEEEEEEccee
Q psy15235        284 HGNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       284 ~a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      .|.|..|.    ....+.|.|.++.
T Consensus        82 ~a~N~~G~----~~~~~~l~V~~~~  102 (103)
T 3qp3_A           82 VCTNYKGE----ASDYATLDVTGGD  102 (103)
T ss_dssp             EEEETTEE----EEEEEEEEEECC-
T ss_pred             EEEeCCCc----EEEEEEEEEECCC
Confidence            99999966    7888888887753

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.61  E-value=2.3e-14  Score=116.30  Aligned_cols=163  Identities=15%  Similarity=0.208  Sum_probs=101.7

Q ss_pred             eEEEeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccce---ee-----------ccCcceEEEeeeeCCeEEEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNIN---QS-----------SVDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~---~~-----------~~~~~~~~~~~~~~~~~~l~   83 (323)
                      .+..+..+.+.+|++|+|.|.+.    +.+.+.|+|..  ....   ..           ....+..+..+.....+.|.
T Consensus         3 ~v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (280)
T 3fku_X            3 QLVQSGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD   82 (280)
T ss_dssp             CEECCCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred             eEEcCCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence            34457778899999999999954    34789999842  1111   10           01122223222345667888


Q ss_pred             Eeecc--cCcceEEEeeccC------------Cc-cceeeee-----------------ee--CCceeEEecCCcEEEEE
Q psy15235         84 IHEAI--LESGYVQSSLFIP------------RM-NAITGNY-----------------DI--EPKYKVFEYRVPFTLKC  129 (323)
Q Consensus        84 i~~~~--~~G~Y~C~~~~~~------------~~-~~~~~~~-----------------~~--~~~~~~~~~g~~v~l~C  129 (323)
                      |.+++  |+|.|+|.+.+..            +. ..+.+..                 .+  .+. ..+.+|++++|.|
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C  161 (280)
T 3fku_X           83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTC  161 (280)
T ss_dssp             ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEE
T ss_pred             ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEE
Confidence            88876  4999999998751            11 1111111                 11  333 5688999999999


Q ss_pred             EeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        130 NVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       130 ~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+.+..+. .+.+.|||.  +.....        ......|+.    .....|.|.+++.+|+|.|.|.+ .+.
T Consensus       162 ~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~-~~~  233 (280)
T 3fku_X          162 TGNSNNVG-NQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCST-WDS  233 (280)
T ss_dssp             ECCCCCCC-TTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE-EET
T ss_pred             EecCCCCC-CceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEE-ecC
Confidence            99883321 378999983  222210        011134443    33456999999999999999999 554

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.61  E-value=1.4e-13  Score=110.55  Aligned_cols=163  Identities=15%  Similarity=0.211  Sum_probs=102.1

Q ss_pred             ceEE-EeeceEEecCCcEEEEEEec--c------CceEEEEEc--Cccceee---------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKIT-YFGDTEIMEGAPINISCILT--I------FEQVKWQLN--GRNINQS---------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~-~~~~~~v~~G~~v~L~C~~~--~------~~~v~W~~~--g~~~~~~---------~~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+. .+..+.+.+|++|+|.|.+.  +      .+.+.|+|+  |..+...         ....+  +..........|
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R--~~~~~~~~~~~L   83 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDR--FTGSGSGTDFTL   83 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTT--EEEEEETTEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCcc--EEEecCCCEEEE
Confidence            3444 45678899999999999953  3      468999995  3322110         01112  222234566788


Q ss_pred             EEeeccc--CcceEEEeeccCCc-----cceeee----------------------eee-CCceeEEecCCcEEEEEEee
Q psy15235         83 SIHEAIL--ESGYVQSSLFIPRM-----NAITGN----------------------YDI-EPKYKVFEYRVPFTLKCNVT  132 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~~~-----~~~~~~----------------------~~~-~~~~~~~~~g~~v~l~C~~~  132 (323)
                      .|.+++.  +|.|+|.+.+....     ..+.+.                      +.+ .+....+.+|++++|.|.+.
T Consensus        84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  163 (264)
T 2gjj_A           84 TIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKAS  163 (264)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEE
T ss_pred             EECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEe
Confidence            8888764  99999999875431     111111                      111 12223577899999999998


Q ss_pred             cCCCCCCceEEEEECC--eeccc-----c--------ccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        133 SPPPGDDYQIVWYKGN--KSITE-----A--------TELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       133 ~~~~~~~~~i~W~~~~--~~~~~-----~--------~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +.++. .+.+.|+++.  .....     .        ....+++.      .....|.|.+++.+|+|.|.|.+ .+.
T Consensus       164 ~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a-~n~  239 (264)
T 2gjj_A          164 GYSFT-GYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVR-SGN  239 (264)
T ss_dssp             SSCGG-GSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE-ECS
T ss_pred             CCccC-CeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEE-ecC
Confidence            87621 2689999963  21110     0        01133443      23568999999999999999999 553

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.60  E-value=2e-13  Score=125.59  Aligned_cols=233  Identities=10%  Similarity=0.057  Sum_probs=140.7

Q ss_pred             cCCcEEEEEEe--ccCceEEEEEcCccceeeccCcceEEEeee-eCCeEEEEEeec--ccCcceEEEeeccCCcc-ceee
Q psy15235         35 EGAPINISCIL--TIFEQVKWQLNGRNINQSSVDSGFAATANL-TEDNFKYSIHEA--ILESGYVQSSLFIPRMN-AITG  108 (323)
Q Consensus        35 ~G~~v~L~C~~--~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~--~~~G~Y~C~~~~~~~~~-~~~~  108 (323)
                      .++++.|.|.+  .|.+.+.|.++|..+...  . ...+.+.. ....+.+.+..+  .+.|.|.|......... ...|
T Consensus        90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~--~-~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p  166 (731)
T 2v5y_A           90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTW--N-RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTP  166 (731)
T ss_dssp             CSEEEEEEEEETTCCCCSEEEEECCCCCSSC--E-EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSC
T ss_pred             CcceEEEEEecCCCCccceeEEEeCCcCCce--e-EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccc
Confidence            35689999995  456899999999776432  0 11111111 022222332222  22566665432111111 1122


Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEE-EE--ECCeeccccccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIV-WY--KGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~-W~--~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y  181 (323)
                      .+. .+....+..|++++|.|.+.+.|   .+.+. |+  ++|..+..    .....    .....|.|.++...|.|.|
T Consensus       167 ~~~-~~~~~~v~~G~~v~l~C~~~g~P---~p~i~~W~~~~~g~~l~~----~~~~~~~~~~~~~~l~I~~~~~~d~g~Y  238 (731)
T 2v5y_A          167 HFL-RIQNVEVNAGQFATFQCSAIGRT---VAGDRLWLQGIDVRDAPL----KEIKVTSSRRFIASFNVVNTTKRDAGKY  238 (731)
T ss_dssp             EEC-CCCCEEEETTSCEEEEEEEESCC---CTTCEEEEEESSSCCEEE----EEEEECCSSEEEEEEEECSCCTTTCEEE
T ss_pred             ccc-cccceEEeCCCcEEEEEEeCCCC---CCceeEEEecCCCccccc----cceEEeccccceEEEEEcccccccCeEE
Confidence            222 44456688999999999999988   67777 88  67776654    11111    2347899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEec---CCC-C--cEEEEECCeeeeccCCeeee
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVG---SPP-P--TVEWRIGNDTYFRSQGRIKL  255 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g---~p~-~--~~~W~~~~~~~~~~~~~~~~  255 (323)
                      +|.| .|..+.. ......|.|..+|....++.........+.|.|....   ..+ .  .+.|...+....    ....
T Consensus       239 ~c~A-~n~~G~~-~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~----~~~~  312 (731)
T 2v5y_A          239 RCMI-RTEGGVG-ISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWN----DRQP  312 (731)
T ss_dssp             EEEE-EETTEEE-ECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCE----EEEE
T ss_pred             EEEE-ECCCCCc-ceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCce----EEec
Confidence            9999 6774331 3445667777777554333344445678899987632   222 2  366655432111    1111


Q ss_pred             ecCCCCCCcceeEEEeecCcCCCeEEEEEEe--ecccC
Q psy15235        256 SEHPEKGTANSVLQIDEATMADRGNYYCHGN--NVATR  291 (323)
Q Consensus       256 ~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~--n~~g~  291 (323)
                      .       ....++|.++...+...|+|.|.  |..|.
T Consensus       313 ~-------~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~  343 (731)
T 2v5y_A          313 V-------DSTSYKIGHLDPDTEYEISVLLTRPGEGGT  343 (731)
T ss_dssp             C-------CSSEEEECSCCTTCEEEEEEEEECSSTTCS
T ss_pred             c-------CcceEEEeCCCCCCEEEEEEEEEecCCCcc
Confidence            1       24678999998888888889999  99887

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.60  E-value=3.6e-15  Score=99.71  Aligned_cols=83  Identities=24%  Similarity=0.372  Sum_probs=66.4

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECC--eeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGN--DTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      +....+.+|+.+.|.|.+.|+|.|.+.|++++  ..+... ......      .....|.|.++..+|+|.|+|.|.|..
T Consensus         9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~-~~~~~~------~~~~~L~i~~~~~~D~G~Y~C~a~N~~   81 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE-LLVDAK------SSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT-SEEEEE------TTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc-EEEEec------CCEEEEEECCCChhcCEEEEEEEEcCC
Confidence            34567889999999999999999999999999  766432 222211      135889999999999999999999999


Q ss_pred             cCCCCCceeEEEEEEc
Q psy15235        290 TRNSQPNEAFVYVRVK  305 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~  305 (323)
                      |.    ....+.|.|+
T Consensus        82 G~----~~~~~~l~V~   93 (93)
T 1wit_A           82 GE----DEAIFEVIVQ   93 (93)
T ss_dssp             EE----EEEEEEEEEC
T ss_pred             Ce----EEEEEEEEEC
Confidence            65    7778877763

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.60  E-value=3.9e-14  Score=114.18  Aligned_cols=160  Identities=14%  Similarity=0.176  Sum_probs=96.3

Q ss_pred             EeeceEEecCCcEEEEEEe-ccCceEEEEE--cCccceee------------ccC-cceEEEeeeeCCeEEEEEeecc--
Q psy15235         27 YFGDTEIMEGAPINISCIL-TIFEQVKWQL--NGRNINQS------------SVD-SGFAATANLTEDNFKYSIHEAI--   88 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~-~~~~~v~W~~--~g~~~~~~------------~~~-~~~~~~~~~~~~~~~l~i~~~~--   88 (323)
                      .+..+.+.+|++|+|.|.+ .+.+.+.|+|  .+......            ... .+..+. ....++..|.|.+++  
T Consensus        32 ~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~-~~~~~~~sL~I~~v~~~  110 (268)
T 3pl6_D           32 TPSNKVTEKGKYVELRCDPISGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAV-RPEGSVSTLKIQRTERG  110 (268)
T ss_dssp             CCSEEEEETTCCEEEEEBCBTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEE-CTTSSSEEEEECSCCGG
T ss_pred             CCCEEEecCCCCEEEEEEeCCCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEE-ecCCCEEEEEECCCCcc
Confidence            3456789999999999995 3567999999  33322110            011 122111 113456778887765  


Q ss_pred             cCcceEEEeeccCCc--c----ceeeeee--e--CCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECCeec
Q psy15235         89 LESGYVQSSLFIPRM--N----AITGNYD--I--EPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI  151 (323)
Q Consensus        89 ~~G~Y~C~~~~~~~~--~----~~~~~~~--~--~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~  151 (323)
                      |+|.|+|.+.+....  .    .+.+...  .  .|...+       +..|+.++|.|.+.+.+|. ...+.|+++|..+
T Consensus       111 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~-~~~v~W~~~g~~l  189 (268)
T 3pl6_D          111 DSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGKEV  189 (268)
T ss_dssp             GCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEESSSEE
T ss_pred             cCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCC-CeEEEEEECCEEC
Confidence            499999999863111  1    1111110  0  222222       2348999999999986641 2399999999887


Q ss_pred             cccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCCC
Q psy15235        152 TEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPKS  190 (323)
Q Consensus       152 ~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~  190 (323)
                      ......            ++.+ .....|.|.....+| +|.|+|.+ .+..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~l~i~~~~~~d~~g~YtC~v-~~~~  239 (268)
T 3pl6_D          190 HSGVCTDPQPLKEQPALNDSRY-SLSSRLRVSATFWQNPRNHFRCQV-QFYG  239 (268)
T ss_dssp             CTTEEECSSCEESSTTCTTCCE-EEEEEEEEEHHHHSCTTCEEEEEE-EECC
T ss_pred             CCCeEeccccccccccCCCCcE-EEEEEEEEcHHHhccCCCEEEEEE-EcCC
Confidence            541111            1112 223456777777677 99999999 5653

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.59  E-value=2.7e-14  Score=112.25  Aligned_cols=162  Identities=15%  Similarity=0.177  Sum_probs=97.0

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc--C----ceEEEEEc--Ccccee---e----------ccCcceEEEeeeeCCeEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI--F----EQVKWQLN--GRNINQ---S----------SVDSGFAATANLTEDNFK   81 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~--~----~~v~W~~~--g~~~~~---~----------~~~~~~~~~~~~~~~~~~   81 (323)
                      ..+..+.++.+.+|++|+|.|.+.+  .    +.+.|+|+  +..+..   .          ....+..+..+...+...
T Consensus         2 v~v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (228)
T 3bae_H            2 VTLKESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVF   81 (228)
T ss_dssp             CEEEEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEE
T ss_pred             cEEeCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEE
Confidence            3456677889999999999999543  2    78999985  332211   0          011122222222234577


Q ss_pred             EEEeeccc--CcceEEEeeccCC------c---cceeeeeee------CCcee------EEecCCcEEEEEEeecCCCCC
Q psy15235         82 YSIHEAIL--ESGYVQSSLFIPR------M---NAITGNYDI------EPKYK------VFEYRVPFTLKCNVTSPPPGD  138 (323)
Q Consensus        82 l~i~~~~~--~G~Y~C~~~~~~~------~---~~~~~~~~~------~~~~~------~~~~g~~v~l~C~~~~~~~~~  138 (323)
                      |.|.+++.  +|.|+|.+.+..+      .   ......+.+      .|.+.      .+..|+.++|.|.+.+..|  
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P--  159 (228)
T 3bae_H           82 MKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP--  159 (228)
T ss_dssp             EEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBS--
T ss_pred             EEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeC--
Confidence            88887765  9999999987542      0   000011111      12221      1357999999999998643  


Q ss_pred             Cc-eEEEEECCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        139 DY-QIVWYKGNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       139 ~~-~i~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+ .|.|++++..+.....    ..+.+ .....|.|.....+| |.|+|.+ .|.
T Consensus       160 ~p~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~d~-g~YtC~~-~n~  212 (228)
T 3bae_H          160 EPVTLTWNSGSLSSGVHTFPAVLQSDLY-TLSSSVTVTSSTWPS-ESITCNV-AHP  212 (228)
T ss_dssp             SCCEEEEGGGTCCTTEEEEEEEEETTEE-EEEEEEEEETTTTTT-SCCEEEE-EEG
T ss_pred             CCEEEEEeeCCcccCceEcCceeCCCcE-EEEEEEEEEhhhcCC-CcEEEEE-EEC
Confidence            45 9999998875421000    01111 234568888877756 9999999 666

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.59  E-value=3.3e-15  Score=118.19  Aligned_cols=155  Identities=10%  Similarity=0.156  Sum_probs=89.1

Q ss_pred             EecCCcEEEEEEec-----cCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcceEEEeeccCCcc
Q psy15235         33 IMEGAPINISCILT-----IFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGYVQSSLFIPRMN  104 (323)
Q Consensus        33 v~~G~~v~L~C~~~-----~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C~~~~~~~~~  104 (323)
                      +.+|++++|.|.+.     |.+ .++|+|++..+.....................|.|.++.  |+|.|+|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            77999999999943     334 899999886654321000000000000123456666554  5999999998876543


Q ss_pred             ceeeee----e--eCCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeE
Q psy15235        105 AITGNY----D--IEPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDS  167 (323)
Q Consensus       105 ~~~~~~----~--~~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~  167 (323)
                      .....+    .  ..|.+.+.      ..|+.++|.|.+.+.+|. ...|.|++||..+...........     .....
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~  187 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPP-DIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSK  187 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS-CCEEEEEETTEECSSEEECCCEECTTSCEEEEEE
T ss_pred             CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECC-CeEEEEEECCEECCCceecCceECCCCCEEEEEE
Confidence            221111    1  13333321      237889999999985542 358999999988754111000001     11223


Q ss_pred             EEEeeeecCCCeeEEEEEEcCC
Q psy15235        168 ITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       168 l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |.|.....+|.|.|+|.+ .|.
T Consensus       188 l~v~~~~~~~~g~YtC~v-~n~  208 (239)
T 1i1c_A          188 LNVKKETWQQGNTFTCSV-LHE  208 (239)
T ss_dssp             EEEEHHHHHTTCCEEEEE-ECT
T ss_pred             EEEChhhcCCCCEEEEEE-ECC
Confidence            444444445799999999 676

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.59  E-value=7e-14  Score=112.72  Aligned_cols=164  Identities=18%  Similarity=0.231  Sum_probs=102.3

Q ss_pred             CCceEEE-eeceEEecCCcEEEEEEec--c-----CceEEEEEcC--ccceeec---------cCcceEEEeeeeCCeEE
Q psy15235         21 ADGKITY-FGDTEIMEGAPINISCILT--I-----FEQVKWQLNG--RNINQSS---------VDSGFAATANLTEDNFK   81 (323)
Q Consensus        21 ~~~~i~~-~~~~~v~~G~~v~L~C~~~--~-----~~~v~W~~~g--~~~~~~~---------~~~~~~~~~~~~~~~~~   81 (323)
                      ....+.. +..+.+.+|++|+|.|.+.  +     .+.+.|+|++  ..+....         ...+  +..........
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r--~~~~~~~~~~~   91 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDR--FSGSGSGTDFT   91 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTT--EEEEEETTEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCccc--EEEEcCCCEEE
Confidence            3444544 5678899999999999953  2     3789999953  2221100         1111  22233456678


Q ss_pred             EEEeeccc--CcceEEEeeccCCc-----cceeeee--------------------------ee-CCceeEEecCCcEEE
Q psy15235         82 YSIHEAIL--ESGYVQSSLFIPRM-----NAITGNY--------------------------DI-EPKYKVFEYRVPFTL  127 (323)
Q Consensus        82 l~i~~~~~--~G~Y~C~~~~~~~~-----~~~~~~~--------------------------~~-~~~~~~~~~g~~v~l  127 (323)
                      |.|.+++.  +|.|+|.+.+....     ..+.+..                          .+ .+....+.+|++++|
T Consensus        92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L  171 (268)
T 1x9q_A           92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL  171 (268)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred             EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEE
Confidence            88887764  99999999876331     1111110                          01 122345778999999


Q ss_pred             EEEeecCCCCCCceEEEEEC--Ceeccc---------------cccccCcEEe------ceeEEEEeeeecCCCeeEEEE
Q psy15235        128 KCNVTSPPPGDDYQIVWYKG--NKSITE---------------ATELSGRLTQ------SKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       128 ~C~~~~~~~~~~~~i~W~~~--~~~~~~---------------~~~~~~~~~~------~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .|.+.+.++. .+.+.|+++  +..+..               .....+++..      ....|.|.+++.+|+|.|+|.
T Consensus       172 ~C~~~~~~~~-~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  250 (268)
T 1x9q_A          172 SCVTSGFTFG-HYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCT  250 (268)
T ss_dssp             EEEEESSCGG-GCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEecCcccc-ccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence            9999886532 368999985  222110               0112345541      246899999999999999999


Q ss_pred             EEcC
Q psy15235        185 LIDP  188 (323)
Q Consensus       185 ~~~~  188 (323)
                      + .+
T Consensus       251 a-~~  253 (268)
T 1x9q_A          251 G-AS  253 (268)
T ss_dssp             E-EE
T ss_pred             E-cc
Confidence            9 44

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=3.3e-15  Score=101.13  Aligned_cols=90  Identities=24%  Similarity=0.476  Sum_probs=70.3

Q ss_pred             Eecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235        204 IMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY  282 (323)
Q Consensus       204 ~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~  282 (323)
                      ..+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ...       ....|.|.++..+|+|.|+
T Consensus         9 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-~~~-------~~~~L~i~~v~~~D~G~Y~   80 (99)
T 2yr3_A            9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST-CEA-------GVAELHIQDALPEDHGTYT   80 (99)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCE-EET-------TEEEEEECSCCTTCCBCEE
T ss_pred             ccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceE-eeC-------CeEEEEECCCChhhCEEEE
Confidence            3455554 445677889999999999999999999999999887543221 111       3578999999999999999


Q ss_pred             EEEeecccCCCCCceeEEEEEEc
Q psy15235        283 CHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       283 C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      |.|.|..|.    ....+.|.|+
T Consensus        81 C~a~N~~g~----~~~~~~l~V~   99 (99)
T 2yr3_A           81 CLAENALGQ----VSCSAWVTVH   99 (99)
T ss_dssp             EEEECSSCE----EEEECCEEEC
T ss_pred             EEEEECCCe----EEEEEEEEEC
Confidence            999999965    6777777663

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.59  E-value=1.4e-14  Score=113.76  Aligned_cols=173  Identities=18%  Similarity=0.225  Sum_probs=103.7

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc----------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE----------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~----------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      +....+.+|++++|.|.+.+.... ...+.|||..  ..   +..          ...+.+|+.      .....|+|.+
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFL-DSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTT   85 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESS
T ss_pred             CCCEEEecCCCEEEEEEecCcccc-CCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECC
Confidence            334668899999999999763211 4689999832  11   100          112235554      2346699999


Q ss_pred             eecCCCeeEEEEEEcCCCC-------CCCCceeeeeEEE----ecceee-eeceeEEeeCCeEEEEEEEecC-C-CCcEE
Q psy15235        173 TTVDDAGQYSCRLIDPKST-------NTTPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLECLVVGS-P-PPTVE  238 (323)
Q Consensus       173 ~~~~d~G~y~C~~~~~~~~-------~~~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~C~~~g~-p-~~~~~  238 (323)
                      ++.+|+|.|.|.+ .+...       .........|.|.    .+|.+. .++...+.+|+.+.|.|.+.+. | ++.+.
T Consensus        86 v~~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~  164 (226)
T 3mlr_H           86 LQASDTGKYFCTR-LYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  164 (226)
T ss_dssp             CCGGGCEEEEEEE-EEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCcccCEEEEEeE-ccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEE
Confidence            9999999999999 43210       0001122245553    245454 3333445679999999999774 5 35799


Q ss_pred             EEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        239 WRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       239 W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      |  ++..+.............++ ....+.|+|.....+| |.|+|.|.|..+.
T Consensus       165 W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  215 (226)
T 3mlr_H          165 W--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  215 (226)
T ss_dssp             E--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred             E--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCC
Confidence            9  44332211000000000111 1234689999999889 9999999999854

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=3.1e-15  Score=104.77  Aligned_cols=94  Identities=29%  Similarity=0.413  Sum_probs=76.4

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.+. .+....+.+|+.+.|.|.+.|+|.+.+.|++++..+.....++...       ...+|.|.+++.+|+|.|+|.
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~   80 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL-------ENGVLQIRYAKLGDTGRYTCI   80 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEE-------ETTEEEEESCCGGGCCCEEEE
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEc-------cCCEEEEccCCcCCCEEEEEE
Confidence            34443 3446678899999999999999999999999998886555566555       356899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEcceecC
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      |.|..|.    ....+.|.|.+.+.+
T Consensus        81 a~n~~g~----~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           81 ASTPSGE----ATWSAYIEVQEFGVP  102 (118)
T ss_dssp             EECSSCE----EEEECCEEEECCSCC
T ss_pred             EEcCCCc----EEEEEEEEEEeCCCC
Confidence            9999965    777788888777554

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.58  E-value=1e-13  Score=107.82  Aligned_cols=166  Identities=12%  Similarity=0.029  Sum_probs=107.9

Q ss_pred             ceEEEeeceEEecCCcEEEEEE--eccCceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc--CcceEEEee
Q psy15235         23 GKITYFGDTEIMEGAPINISCI--LTIFEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL--ESGYVQSSL   98 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~--~~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~C~~~   98 (323)
                      +.+..+..+.+.+|+.+.|.|.  +.|.+.+.|+++|..+.....   ..+..........|.|.++..  .|.|+|.+.
T Consensus        20 P~~~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           20 PKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY---SNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSS---CSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             CcccCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCC---ccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            3444556678999999999999  457789999999988766411   112223334456677777654  999999999


Q ss_pred             ccCCccceeeeeee--C---Cc-eeEEecCCcEEEEEEeec---CCCCCCceEEEEECCeeccccccccCcEE----ece
Q psy15235         99 FIPRMNAITGNYDI--E---PK-YKVFEYRVPFTLKCNVTS---PPPGDDYQIVWYKGNKSITEATELSGRLT----QSK  165 (323)
Q Consensus        99 ~~~~~~~~~~~~~~--~---~~-~~~~~~g~~v~l~C~~~~---~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~  165 (323)
                      +..+.......+.+  .   |. ......+..+.|.|....   ..|.....+.|.+++.....    .....    ...
T Consensus        97 n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~----~~~~~~~~~~~~  172 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH----SKWYDAKEASME  172 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE----EEEEEHHHHHHH
T ss_pred             ECCCceEEEEEEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc----cccccccccccc
Confidence            98877654444444  1   11 122345778899997433   22210125788887654322    11111    223


Q ss_pred             eEEEEeeeecCCCeeEEEEEEcCCCCCCCCc
Q psy15235        166 DSITIRKTTVDDAGQYSCRLIDPKSTNTTPL  196 (323)
Q Consensus       166 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~  196 (323)
                      ..+.|.++...+.|.|+|.| .|..|....+
T Consensus       173 ~~l~i~~L~~~~~y~~~~~A-~N~~G~s~~S  202 (215)
T 3mtr_A          173 GIVTIVGLKPETTYAVRLAA-LNGKGLGEIS  202 (215)
T ss_dssp             TEEEEECCCTTCEEEEEEEE-EESSCBCCCC
T ss_pred             ccEEECCCCCCCEEEEEEEE-EeCCcccCcc
Confidence            78999999999999999999 7876554433

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=6.3e-15  Score=101.83  Aligned_cols=99  Identities=19%  Similarity=0.317  Sum_probs=77.1

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....++.+.... +  ....|.|.+++.+|+|.|+|.
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~-~--~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm2_A            8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL-D--GTCSLHTTASTLDDDGNYTIM   84 (110)
T ss_dssp             CCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECT-T--CEEEEEESSCCTTTCSCCEEE
T ss_pred             CCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECC-C--cEEEEEECCCChhhCEEEEEE
Confidence            34333 3445678899999999999999999999999999887655566554211 1  235899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEcceecCc
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      |.|..|.    ....+.|.|.+.+...
T Consensus        85 a~N~~g~----~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           85 AANPQGR----ISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             EECTTCC----EEECCCEEEECCSCCS
T ss_pred             EEECCCe----EEEEEEEEEECCCCCC
Confidence            9999966    7777888887776553

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.58  E-value=1.6e-16  Score=112.14  Aligned_cols=111  Identities=20%  Similarity=0.364  Sum_probs=85.6

Q ss_pred             ceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCc-EEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeec
Q psy15235        196 LAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       196 ~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+.|.|..+|.+..+....+.+|+.+.|.|.+.|.|.|. +.|++++..+... ..++.+..........++|.|.++
T Consensus         4 ~~~~~l~V~~~P~i~~~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v   83 (122)
T 2cry_A            4 GSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI   83 (122)
T ss_dssp             SCCCCCCCCSSCCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTC
T ss_pred             ceEEEEEEecCCCccCCCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCC
Confidence            45667788888877766677789999999999999999997 9999999887642 345544211111112568999999


Q ss_pred             CcCCC-eEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        274 TMADR-GNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       274 ~~~d~-G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      +.+|. |.|+|.|.|..|.    ....+.|.|.+.+..
T Consensus        84 ~~~D~~G~Y~C~a~N~~G~----~~~~~~l~V~~~~~~  117 (122)
T 2cry_A           84 VRADFQTIYNCTAWNSFGS----DTEIIRLKEQGSEMS  117 (122)
T ss_dssp             CHHHHHSCEEEEEECSSCE----EEEEECCCCSCSSCC
T ss_pred             ChhhCCceEEEEEECCCCe----EEEEEEEEECCCCCC
Confidence            99999 9999999999966    778888888875443

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.57  E-value=2e-14  Score=100.05  Aligned_cols=89  Identities=17%  Similarity=0.299  Sum_probs=69.7

Q ss_pred             eCCeEEEEEEEecCCCCcEEEEECCeeeeccCCee-eeecC-CCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCc
Q psy15235        219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRI-KLSEH-PEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPN  296 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~  296 (323)
                      .+..+.|.|.+.|+|.|.++|++||..+..+.... ..... .........|.|.++...|+|.|+|.|.|.+|.    .
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~----~   89 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ----A   89 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE----E
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCe----E
Confidence            57789999999999999999999999987544322 11210 011123578999999999999999999999976    8


Q ss_pred             eeEEEEEEcceecCc
Q psy15235        297 EAFVYVRVKGKSFGY  311 (323)
Q Consensus       297 ~~~~~l~v~~~~~~~  311 (323)
                      ...+.|.|.+.|...
T Consensus        90 ~~t~~l~v~~~P~~~  104 (126)
T 1he7_A           90 SASIMAAFMDNPFEF  104 (126)
T ss_dssp             EEEEEECCCSCTTSC
T ss_pred             EEEEEEEEEcCCCCC
Confidence            888899888887663

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.57  E-value=2.1e-14  Score=113.05  Aligned_cols=158  Identities=9%  Similarity=0.131  Sum_probs=97.9

Q ss_pred             eEEEeeceEEecCCcEEEEEEec---c-Cc-eEEEEEcCccc-eeeccCcceEEEeeeeCC----eEEEEEeecc--cCc
Q psy15235         24 KITYFGDTEIMEGAPINISCILT---I-FE-QVKWQLNGRNI-NQSSVDSGFAATANLTED----NFKYSIHEAI--LES   91 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~---~-~~-~v~W~~~g~~~-~~~~~~~~~~~~~~~~~~----~~~l~i~~~~--~~G   91 (323)
                      .+..+....+.+|+.++|.|.+.   | .+ .++|+++|..+ ...   .. ... ...++    ...|.|.++.  |+|
T Consensus        16 ~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~---~~-~~~-~~~~g~~~~~s~L~I~~~~~~D~g   90 (231)
T 2w59_A           16 YAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPD---PM-VLQ-EHFNGTYSASSAVPVSTQDWLSGE   90 (231)
T ss_dssp             EEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCC---CC-EEE-ECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             EEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccc---cc-cce-ECCCCcEEEEEEEEecchhccCCC
Confidence            33445556678999999999943   4 24 99999999877 221   01 000 01112    2356666654  489


Q ss_pred             ceEEEeeccCCccceeeeeee------CCceeEEe------cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc--
Q psy15235         92 GYVQSSLFIPRMNAITGNYDI------EPKYKVFE------YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL--  157 (323)
Q Consensus        92 ~Y~C~~~~~~~~~~~~~~~~~------~~~~~~~~------~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~--  157 (323)
                      .|+|.+.+......+...+..      .|.+.+..      .+..++|.|.+.+.+|. .+.|.|++||..+......  
T Consensus        91 ~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~-~~~v~W~k~g~~l~~~~~~~~  169 (231)
T 2w59_A           91 RFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPR-DIEIRWLRDHRAVPATEFVTT  169 (231)
T ss_dssp             CEEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS-CCEEEEEETTEECCGGGCEEC
T ss_pred             EEEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCC-CcEEEEEECCEECCCcccccC
Confidence            999999987654332222221      22222221      24579999999986542 3799999999988652100  


Q ss_pred             --------------c-CcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        158 --------------S-GRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       158 --------------~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                                    + +.+ .....|.|.....+|.|.|+|.| .|.
T Consensus       170 ~~~~~~~~~~~~~~d~gt~-~~~s~L~i~~~~~~~~g~YtC~v-~n~  214 (231)
T 2w59_A          170 AVLPEERTANGAGGDGDTF-FVYSKMSVETAKWNGGTVFACMA-VHE  214 (231)
T ss_dssp             CCEECCTTSCC---CCCCE-EEEEEEEEEHHHHHTTCCEEEEE-ECT
T ss_pred             ccccCcccccccCCCCCeE-EEEEEEEEeHHHcCCCCcEEEEE-EcC
Confidence                          0 111 12245777777777899999999 676

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.57  E-value=3.8e-14  Score=113.25  Aligned_cols=163  Identities=13%  Similarity=0.167  Sum_probs=99.0

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+..+..+.+.+|++|+|.|.+.+    ...+.|+|..  ......              ....+..+..+...+.+.|
T Consensus         2 v~v~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (253)
T 3liz_H            2 VQLVESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFL   81 (253)
T ss_dssp             CEEEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEE
T ss_pred             ceEEcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEE
Confidence            3466677889999999999999643    4689999943  211110              0112333333333567778


Q ss_pred             EEeeccc--CcceEEEeeccC----Cc--cceeeeee----eCCcee------EEecCCcEEEEEEeecCCCCCCceEEE
Q psy15235         83 SIHEAIL--ESGYVQSSLFIP----RM--NAITGNYD----IEPKYK------VFEYRVPFTLKCNVTSPPPGDDYQIVW  144 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~----~~--~~~~~~~~----~~~~~~------~~~~g~~v~l~C~~~~~~~~~~~~i~W  144 (323)
                      .|.+++.  +|.|+|.+.+..    ..  ......+.    ..|.+.      .+..|+.++|.|.+.+..|. ...+.|
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~-~~~v~W  160 (253)
T 3liz_H           82 QMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE-PVTVTW  160 (253)
T ss_dssp             EECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSS-CCEEEE
T ss_pred             EECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCC-CeEEEE
Confidence            8887754  999999997652    11  11111111    122221      13469999999999984431 249999


Q ss_pred             EECCeecccc----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        145 YKGNKSITEA----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       145 ~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++++..+...    ....+.+ .....|.|.....+| |.|+|.+ .|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d-g~ytC~v-~~~  206 (253)
T 3liz_H          161 NSGSLSSGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNV-AHP  206 (253)
T ss_dssp             GGGTBCTTEEECCCEEETTEE-EEEEEEEEETTSTTT-SCCEEEE-EEG
T ss_pred             EeCCeecceEeCCccccCCeE-EEEEEEEEcHHHCCC-ceEEEEE-EEC
Confidence            9988743210    0001222 233678898888888 9999999 666

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.57  E-value=2.2e-13  Score=101.84  Aligned_cols=158  Identities=15%  Similarity=0.163  Sum_probs=104.6

Q ss_pred             eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--CeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       111 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .+.|+...+..|+++.|.|.+....   +..+.|.-.  +..+..     ..  .....|.|.+++. | |.|.|.+ ..
T Consensus         3 ~v~P~~~~V~~G~Sv~l~Cs~~c~~---p~~~~~~t~l~~~~~~~-----~~--~~~~~l~l~~vs~-~-g~y~C~~-~c   69 (185)
T 1iam_A            3 SVSPSKVILPRGGSVLVTCSTSCDQ---PKLLGIETPLPKKELLL-----PG--NNRKVYELSNVQE-D-SQPMCYS-NC   69 (185)
T ss_dssp             EEESSEEEEETTEEEEEEEEECSSS---CSEEEEECSSCEEEECS-----SS--SSEEEEEEEEECS-C-BCCEEEE-EC
T ss_pred             EEECCCcEEeCCCCEEEEEEccCCC---CccceEEeeCCCccEec-----cC--CceeEEEEEecCc-C-CEEEEEE-EC
Confidence            3456667789999999999997544   234777531  111101     00  2235688999973 3 9999999 54


Q ss_pred             CCCCCCCceeeeeEEEeccee-eeec-eeEEeeCCeEEEEEEEecC-CCC--cEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235        189 KSTNTTPLAQADFDVIMKPTA-KLVE-TLTVIEGEKLRLECLVVGS-PPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGT  263 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v~~~p~~-~~~~-~~~~~~g~~~~l~C~~~g~-p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
                      .  .......+.|+|..+|.. .+.. ...+.+|+.++|.|.+.|. |..  .+.|++++..+....   . .  .  ..
T Consensus        70 ~--~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~---~-~--~--~~  139 (185)
T 1iam_A           70 P--DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP---A-V--G--EP  139 (185)
T ss_dssp             S--SCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE---C-C--T--TT
T ss_pred             C--CCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc---C-C--C--cc
Confidence            4  235777888888877633 3322 3458899999999999875 543  489999999886432   0 0  0  01


Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...+|++.....+|...|+|.|.|..+.
T Consensus       140 ~~~tl~~~~~reD~g~~~sC~A~~~l~~  167 (185)
T 1iam_A          140 AEVTTTVLVRRDHHGAQFSCRTELDLRP  167 (185)
T ss_dssp             EEEEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred             ccEEEEEeceeccCCCeEEEEEEecCcc
Confidence            2456776655555555999999999874

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.57  E-value=2.1e-14  Score=98.29  Aligned_cols=92  Identities=25%  Similarity=0.374  Sum_probs=72.7

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y  181 (323)
                      ..|.+...+....+.+|+++.|.|.+.|.|   .+.|+|+++|..+..    +.++.    .....|.|.+++.+|+|.|
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   84 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEP---PPVVVWEKGGQQLAA----SERLSFPADGAEHGLLLTAALPTDAGVY   84 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----CSSEECCEETTEEEEEESSCCGGGCEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEec---CCEEEEEECcccccc----eeeEEEeecCceEEEEEecCChhhCEEE
Confidence            356666677777888999999999999988   789999999999977    55554    4556899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      +|.| .|..+  .....+.|.|..+|
T Consensus        85 ~C~a-~N~~G--~~~~~~~l~V~~pP  107 (107)
T 3knb_B           85 VCRA-RNAAG--EAYAAAAVTVLEPP  107 (107)
T ss_dssp             EEEE-EETTE--EEEEEEEEEEEC--
T ss_pred             EEEE-EECCC--EEEEEEEEEEEcCC
Confidence            9999 77743  34556677776654

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.56  E-value=2e-13  Score=109.10  Aligned_cols=160  Identities=16%  Similarity=0.246  Sum_probs=92.5

Q ss_pred             EeeceEEecCCcEEEEEEe--ccCceEEEEEc--Ccccee--eccC---------cceEEEeeeeCCe-EEEEEeecccC
Q psy15235         27 YFGDTEIMEGAPINISCIL--TIFEQVKWQLN--GRNINQ--SSVD---------SGFAATANLTEDN-FKYSIHEAILE   90 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~--~~~~~v~W~~~--g~~~~~--~~~~---------~~~~~~~~~~~~~-~~l~i~~~~~~   90 (323)
                      .+..+.+.+|++|+|.|..  .+.+.+.|+|.  +.....  ....         .+..+........ +.|.-....|+
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~Ds   86 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSC
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhC
Confidence            4566889999999999983  35678999983  221111  0000         0001112221111 44555555669


Q ss_pred             cceEEEeeccCC---cc-------ceeeeee----eCCceeEEe-------cCCcEEEEEEeecCCCCCCceEEEEECCe
Q psy15235         91 SGYVQSSLFIPR---MN-------AITGNYD----IEPKYKVFE-------YRVPFTLKCNVTSPPPGDDYQIVWYKGNK  149 (323)
Q Consensus        91 G~Y~C~~~~~~~---~~-------~~~~~~~----~~~~~~~~~-------~g~~v~l~C~~~~~~~~~~~~i~W~~~~~  149 (323)
                      |.|+|.+.+..+   ..       .+.+...    ..|.+.+..       .|+.++|.|.+.+..|. ...+.|+++|.
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~-~i~v~W~k~g~  165 (253)
T 3to4_D           87 RTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGK  165 (253)
T ss_dssp             EEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETTE
T ss_pred             eEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECC-cEEEEEEECCE
Confidence            999999975432   10       1111110    133333322       36899999999985442 24899999998


Q ss_pred             eccccccc------------cCcEEeceeEEEEeeeecCC-CeeEEEEEEcCC
Q psy15235        150 SITEATEL------------SGRLTQSKDSITIRKTTVDD-AGQYSCRLIDPK  189 (323)
Q Consensus       150 ~~~~~~~~------------~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~  189 (323)
                      .+......            ++.+ .....|.|.....+| .|.|+|.+ .+.
T Consensus       166 ~l~~~~~~~~~~~~~~~~~~~g~~-~~~s~l~i~~~~~~d~~~~ytC~v-~h~  216 (253)
T 3to4_D          166 EVHSGVSTDPQPLKEQPALNDSRY-ALSSRLRVSATFWQNPRNHFRCQV-QFY  216 (253)
T ss_dssp             EECTTEEECSSCEESSTTCTTCCE-EEEEEEEEEHHHHTCTTCEEEEEE-EEC
T ss_pred             ECCCceecccccccccccCCCCCE-EEEEEEEECHHHhccCCCEEEEEE-EeC
Confidence            87542111            1222 223467777776667 77999999 565

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.56  E-value=1e-13  Score=111.62  Aligned_cols=165  Identities=13%  Similarity=0.193  Sum_probs=96.1

Q ss_pred             ccCCceEEEeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccceee--------------ccCcceEEEeeeeCC
Q psy15235         19 ISADGKITYFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNINQS--------------SVDSGFAATANLTED   78 (323)
Q Consensus        19 ~~~~~~i~~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~   78 (323)
                      ......+..+..+.+.+|++|+|.|...    ....+.|+|..  ......              ....+.....+...+
T Consensus        21 ~~~~~~v~q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~  100 (267)
T 3u1s_H           21 AHSQVQLVQSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGAS  100 (267)
T ss_dssp             ---CCCEEECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGC
T ss_pred             ccccceEEeeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCC
Confidence            3455567777778899999999999953    34689999842  221110              011222232333356


Q ss_pred             eEEEEEeeccc--CcceEEEeec-------cC------------C-c-------cceeeeee--e--CCceeE------E
Q psy15235         79 NFKYSIHEAIL--ESGYVQSSLF-------IP------------R-M-------NAITGNYD--I--EPKYKV------F  119 (323)
Q Consensus        79 ~~~l~i~~~~~--~G~Y~C~~~~-------~~------------~-~-------~~~~~~~~--~--~~~~~~------~  119 (323)
                      .+.|.|.+++.  +|.|+|.+.+       ..            . .       ......+.  .  .|.+..      .
T Consensus       101 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~  180 (267)
T 3u1s_H          101 TVYMELRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKS  180 (267)
T ss_dssp             CEEEEECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGG
T ss_pred             EEEEEECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCccc
Confidence            77788887754  9999999961       00            0 0       00111111  1  222221      1


Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..|+.++|.|.+.+..|. ...+.|  ++..+.....       .++.+ .....|.|.....+| +.|+|.+ .+.
T Consensus       181 ~~g~~~~l~C~~~~~~p~-~~~v~W--~~~~~~~~~~~~~~~~~~~g~y-~~~s~L~i~~~~~~~-~~ytC~v-~h~  251 (267)
T 3u1s_H          181 TSGGTAALGCLVKDYFPE-PVTVSW--NSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK  251 (267)
T ss_dssp             EETTEEEEEEEEEEEBSS-CCEEEE--GGGTBCTTEEECCCEECTTSCE-EEEEEEEEEGGGGGT-CCCEEEE-EEG
T ss_pred             CCCCcEEEEEEEeEEECC-CeEEEE--CCcccCCCEEeCCceECCCCCE-EEEEEEEECchhcCC-CEEEEEE-EEC
Confidence            368899999999886543 468999  5544422100       11222 233568888887778 9999999 665

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.55  E-value=3.6e-14  Score=104.28  Aligned_cols=105  Identities=22%  Similarity=0.329  Sum_probs=78.1

Q ss_pred             eeEEEecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        200 DFDVIMKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       200 ~l~v~~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      .+.+..+|.+. .+....+..|+.+.|.|.+.|+|.+.+.|++++..+... .++.+.... .  ....|.|.++..+|+
T Consensus        35 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~-~--~~~~L~I~~v~~~D~  110 (154)
T 1fhg_A           35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYDE-E--GNCSLTISEVCGDDD  110 (154)
T ss_dssp             CCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEECT-T--CEEEEEESSCCGGGC
T ss_pred             cccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCC-CcEEEEECC-C--CeEEEEECCCChhcC
Confidence            34445566655 344677899999999999999999999999999888643 444433111 1  247899999999999


Q ss_pred             eEEEEEEeecccCCCCCceeEEEEEEcceecCcC
Q psy15235        279 GNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYD  312 (323)
Q Consensus       279 G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~  312 (323)
                      |.|+|.|.|..|.    ....+.|.|...|....
T Consensus       111 G~Y~C~a~N~~G~----~~~~~~l~V~~~p~~~~  140 (154)
T 1fhg_A          111 AKYTCKAVNSLGE----ATCTAELLVETMGKEGE  140 (154)
T ss_dssp             EEEEEEEEETTEE----EEEEEEEEEECC-----
T ss_pred             EEEEEEEEECCCe----EEEEEEEEEeCcCcCCC
Confidence            9999999999966    77888888887776554

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.55  E-value=1.7e-13  Score=106.60  Aligned_cols=160  Identities=11%  Similarity=0.141  Sum_probs=92.5

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee--e-----------ccCcceEEEeeeeCCeEEEEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ--S-----------SVDSGFAATANLTEDNFKYSI   84 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~--~-----------~~~~~~~~~~~~~~~~~~l~i   84 (323)
                      .+..+.++.+.+|++|+|.|.+.+    .+.+.|+|+.  ..+..  .           ....+..+..+...+.+.|.|
T Consensus         3 ~v~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   82 (215)
T 1c5d_H            3 KLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKM   82 (215)
T ss_dssp             CEEEECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEE
T ss_pred             eEEcCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEE
Confidence            456677889999999999999543    4789999953  22210  0           011222222222345677888


Q ss_pred             eeccc--CcceEEEeeccCCc-----cceeeeeee----CCceeE------EecCCcEEEEEEeecCCCCCCc-eEEEEE
Q psy15235         85 HEAIL--ESGYVQSSLFIPRM-----NAITGNYDI----EPKYKV------FEYRVPFTLKCNVTSPPPGDDY-QIVWYK  146 (323)
Q Consensus        85 ~~~~~--~G~Y~C~~~~~~~~-----~~~~~~~~~----~~~~~~------~~~g~~v~l~C~~~~~~~~~~~-~i~W~~  146 (323)
                      .+++.  +|.|+|.+.+..+.     ......+..    .|.+..      +..|+.++|.|.+.+..|  .+ .|.|++
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P--~p~~v~W~~  160 (215)
T 1c5d_H           83 NSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFP--EPVTVTWNS  160 (215)
T ss_dssp             SSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBS--SCCEEEEGG
T ss_pred             CCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEc--CCcEEEEcc
Confidence            87764  99999999875311     111111110    122222      246899999999998733  45 999999


Q ss_pred             CCeeccccccccCcEE-eceeEE--EEeeeecCCCeeEEEEEEcCC
Q psy15235        147 GNKSITEATELSGRLT-QSKDSI--TIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       147 ~~~~~~~~~~~~~~~~-~~~~~l--~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++..+...  ...... .....+  .+.....+| |.|+|.+ .|.
T Consensus       161 ~g~~~~~~--~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v-~n~  202 (215)
T 1c5d_H          161 GALSSDVH--TFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNV-AHP  202 (215)
T ss_dssp             GTTCCSCC--BCCCEEETTEEEEEEEEEESSTTT-SCCEEEE-EEG
T ss_pred             CCccCceE--ecCcccCCCCEEEEEEEecccCCC-CeEEEEE-EeC
Confidence            88654320  011111 111111  122333345 9999999 666

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.55  E-value=5.3e-14  Score=95.11  Aligned_cols=92  Identities=26%  Similarity=0.404  Sum_probs=71.7

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+... .++.+..  ..  ....|.|.++..+|+|.|+|.
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~--~~--~~~~L~i~~~~~~d~G~Y~C~   80 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG-GKYKLSE--DK--GGFFLEIHKTDTSDSGLYTCT   80 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSS-SSEEEEE--ET--TEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCC-CCEEEEE--eC--CEEEEEECCCCcccCEEEEEE
Confidence            34443 344667889999999999999999999999999887643 4444441  11  245899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEcc
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      |.|..|.    ....+.|.|.+
T Consensus        81 a~n~~g~----~~~~~~l~V~~   98 (99)
T 3puc_A           81 VKNSAGS----VSSSCKLTIKA   98 (99)
T ss_dssp             EEETTEE----EEEEEEEEEEC
T ss_pred             EEeCCCc----EeEEEEEEEEe
Confidence            9999966    77777877754

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=6.8e-15  Score=101.68  Aligned_cols=98  Identities=29%  Similarity=0.412  Sum_probs=75.9

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..........  ...  ...+|.|.+++.+|+|.|+|.
T Consensus         9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--~~~--~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm3_A            9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV--REN--GVHSLIIEPVTSRDAGIYTCI   84 (110)
T ss_dssp             CCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEE--CTT--SCEEEEESSCCGGGCSBBCEE
T ss_pred             CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEE--ecC--CeEEEEEeeCCcccCEEEEEE
Confidence            34333 3446778899999999999999999999999998876544433322  111  246899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEcceecCc
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      |.|..|.    ....+.|.|.++|.+.
T Consensus        85 a~n~~g~----~~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           85 ATNRAGQ----NSFSLELVVAAKESGP  107 (110)
T ss_dssp             EECSSCE----EEECCEEEEECCCCSS
T ss_pred             EECCCCE----EEEEEEEEEeCCCCCC
Confidence            9999965    7788888888877653

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.55  E-value=3.8e-13  Score=105.75  Aligned_cols=172  Identities=14%  Similarity=0.108  Sum_probs=99.6

Q ss_pred             EeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccce---eec----------cCcceEEEeeeeCCeEEEEEeec
Q psy15235         27 YFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNIN---QSS----------VDSGFAATANLTEDNFKYSIHEA   87 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~---~~~----------~~~~~~~~~~~~~~~~~l~i~~~   87 (323)
                      .+..+.+.+|++|+|.|.+.    +...+.|+|..  +.+.   ...          ...+..+..+...+.+.|.|.++
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (230)
T 1ypz_F            7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL   86 (230)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred             cCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcC
Confidence            35678899999999999954    34689999953  2221   100          11111111122236678888877


Q ss_pred             c--cCcceEEEeecc--CCc----cceeeeee---------eCCceeEE-------ecCCcEEEEEEeecCCCCCCceEE
Q psy15235         88 I--LESGYVQSSLFI--PRM----NAITGNYD---------IEPKYKVF-------EYRVPFTLKCNVTSPPPGDDYQIV  143 (323)
Q Consensus        88 ~--~~G~Y~C~~~~~--~~~----~~~~~~~~---------~~~~~~~~-------~~g~~v~l~C~~~~~~~~~~~~i~  143 (323)
                      +  |+|.|+|.+.+.  ...    ......+.         ..|...+.       ..|+.++|.|.+.+..|. .+.|.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~-~~~v~  165 (230)
T 1ypz_F           87 EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPD-VIRVY  165 (230)
T ss_dssp             CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSC-CCEEE
T ss_pred             ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCC-CeEEE
Confidence            6  499999999864  110    11111111         11332332       247899999999987442 36999


Q ss_pred             EEE-CCeecccccc-----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        144 WYK-GNKSITEATE-----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       144 W~~-~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      |++ +|..+.....     .++.+ .....|.|..... + |.|+|.+ .+....    ..+...+..+|
T Consensus       166 W~~~~g~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~-~-~~ytC~v-~~~~~~----~~~~~~~~fp~  227 (230)
T 1ypz_F          166 WKEKDGNTILDSQEGDTLKTNDTY-MKFSWLTVPERAM-G-KEHRCIV-KHENNK----GGADQAIFFPS  227 (230)
T ss_dssp             EECTTSSCBCCCEECCCEEETTEE-EEEEEEEECGGGT-T-SCEEEEE-ECSSCT----TTSCEEEEECC
T ss_pred             EEccCCeEccccccceeecCCCCE-EEEEEEEEEhhhC-C-CEEEEEE-EECCCC----CceeEeeecCC
Confidence            999 8776643111     01111 2234677777664 4 8999999 666322    23444555544

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=1.8e-14  Score=100.90  Aligned_cols=105  Identities=20%  Similarity=0.261  Sum_probs=75.0

Q ss_pred             eeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe
Q psy15235        200 DFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG  279 (323)
Q Consensus       200 ~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  279 (323)
                      .|.|..+|.+.......  ..+...|.|.+.|+|.|.+.|+++|..+.... +.............+.|.|.++..+|+|
T Consensus         2 ~L~V~~pP~i~~~~~~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G   78 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEPE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESK-IIHVEYYQEGEISEGCLLFNKPTHYNNG   78 (118)
T ss_dssp             --CCCCCCCCCCCCCCC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSS-SEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred             EEEEecCCceeccCCCe--eccceEEEEEeeeeCCCeEEEEECCEECCCCC-ceeEEEeccCccccEEEEECCCChhcCE
Confidence            45566677655332222  23667899999999999999999999886543 2222110111123578999999999999


Q ss_pred             EEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        280 NYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       280 ~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      .|+|.|.|..|.    ....+.|.|.++|..+
T Consensus        79 ~Y~C~a~N~~G~----~~~~~~l~v~~~P~~v  106 (118)
T 1wwc_A           79 NYTLIAKNPLGT----ANQTINGHFLKEPFPV  106 (118)
T ss_dssp             EEEEEEEETTEE----EEEEEEECCSCCCCCS
T ss_pred             EEEEEEECCCCe----EeeEEEEEEccCCCch
Confidence            999999999966    8889999888887654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.55  E-value=8e-14  Score=93.85  Aligned_cols=88  Identities=20%  Similarity=0.342  Sum_probs=70.3

Q ss_pred             eeceeEEeeCCeEEEEEEEecC-CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.+..+.+|+.+.|.|.+.|. |.+.+.|++++..+... .++.+..  .+  ....|.|.+++.+|+|.|+|.|.|..
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~-~~~~~~~--~~--~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS-EKYEITY--ED--GVAILYVKDITKLDDGTYRCKVVNDY   81 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSS-SSEEEEE--ET--TEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCC-CCEEEEE--cC--CeEEEEEecCChhhCeEEEEEEECCC
Confidence            3446778899999999999997 88999999999887643 4444431  01  24589999999999999999999999


Q ss_pred             cCCCCCceeEEEEEEcce
Q psy15235        290 TRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~~~  307 (323)
                      |.    ....+.|.|.+.
T Consensus        82 g~----~~~~~~l~V~~~   95 (97)
T 2bk8_A           82 GE----DSSYAELFVKGV   95 (97)
T ss_dssp             CE----EEEEEEEEETTT
T ss_pred             Ce----EeEEEEEEEEec
Confidence            65    778888888753

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.54  E-value=1e-13  Score=109.26  Aligned_cols=163  Identities=11%  Similarity=0.181  Sum_probs=95.6

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceE--EEEEcC--ccceee----------------ccCcceEEEeeeeCC
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQV--KWQLNG--RNINQS----------------SVDSGFAATANLTED   78 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v--~W~~~g--~~~~~~----------------~~~~~~~~~~~~~~~   78 (323)
                      ..+..+.++.+.+|++|+|.|...+    ...+  .|+|..  ......                ....+..+..+...+
T Consensus         2 v~v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   81 (232)
T 3qhz_H            2 VNLRESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKS   81 (232)
T ss_dssp             CEEEEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTT
T ss_pred             CeEEcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCC
Confidence            3566777788999999999999643    2345  999842  211100                011222232233356


Q ss_pred             eEEEEEeeccc--CcceEEEeeccC--------Cc--cceeeeee--e--CCcee------EEecCCcEEEEEEeecCCC
Q psy15235         79 NFKYSIHEAIL--ESGYVQSSLFIP--------RM--NAITGNYD--I--EPKYK------VFEYRVPFTLKCNVTSPPP  136 (323)
Q Consensus        79 ~~~l~i~~~~~--~G~Y~C~~~~~~--------~~--~~~~~~~~--~--~~~~~------~~~~g~~v~l~C~~~~~~~  136 (323)
                      .+.|.|.+++.  +|.|+|.+.+..        ..  ......+.  .  .|.+.      .+..|+.++|.|.+.+.+|
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P  161 (232)
T 3qhz_H           82 QVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  161 (232)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBS
T ss_pred             EEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeC
Confidence            77888887764  999999997542        00  11111111  0  12221      2345899999999988654


Q ss_pred             CCCceEEEEECCeecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        137 GDDYQIVWYKGNKSITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       137 ~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      . ...+.|++++..+...     ...++.+ .....|.|.....+| |.|+|.+ .+.
T Consensus       162 ~-~~~v~W~~~g~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-g~ytC~v-~~~  215 (232)
T 3qhz_H          162 E-PVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK  215 (232)
T ss_dssp             S-CCEEEEGGGTBCTTEEECCCEECTTSCE-EEEEEEEEEGGGGGT-CCCEEEE-EEG
T ss_pred             C-CeEEEEEECCEecceeeccceeCCCCCE-EEEEEEEEchhhcCC-CEEEEEE-EeC
Confidence            3 4578999988644220     0011222 233568888888888 9999999 665

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.54  E-value=3e-14  Score=113.79  Aligned_cols=162  Identities=14%  Similarity=0.230  Sum_probs=86.5

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--cccee---e-----------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQ---S-----------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~---~-----------~~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+.++.++.+.+|++|+|.|.+.+    .+.+.|+|..  +.+..   .           ....+..+..+...+.+.|
T Consensus         2 ~~l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (257)
T 3bn9_D            2 VQLVQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYL   81 (257)
T ss_dssp             CEEEEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             CeEEccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEE
Confidence            3566777889999999999999542    4689999953  22211   0           0112222222222456778


Q ss_pred             EEeecc--cCcceEEEeeccCCc---------c--c--eeeeeee------CCce------eEEecCCcEEEEEEeecCC
Q psy15235         83 SIHEAI--LESGYVQSSLFIPRM---------N--A--ITGNYDI------EPKY------KVFEYRVPFTLKCNVTSPP  135 (323)
Q Consensus        83 ~i~~~~--~~G~Y~C~~~~~~~~---------~--~--~~~~~~~------~~~~------~~~~~g~~v~l~C~~~~~~  135 (323)
                      .|.+++  |+|.|+|.+.+..+.         .  .  ....+.+      .|.+      ..+..|+.++|.|.+.+..
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~  161 (257)
T 3bn9_D           82 QMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF  161 (257)
T ss_dssp             EEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEB
T ss_pred             EECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEE
Confidence            887765  499999999875430         0  0  0011111      1111      1234689999999999864


Q ss_pred             CCCCc-eEEEEECCeeccccc-----cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        136 PGDDY-QIVWYKGNKSITEAT-----ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       136 ~~~~~-~i~W~~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |  .+ .|.|++++..+....     ..++.+ .....|.|.+...+| |.|+|.+ .|.
T Consensus       162 P--~pi~v~W~k~g~~~~~~~~~~~~~~~g~y-~~~s~L~I~~~~~~~-g~YtC~v-~n~  216 (257)
T 3bn9_D          162 P--EPVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK  216 (257)
T ss_dssp             S--SCCEEEETTTTCCSSCEECCCEECTTSCE-EEEEECCCC--------CEEEEE-EEG
T ss_pred             C--CCcEEEEeeCCCcCCcEecCCeEcCCCCE-EEEEEEEEcccccCC-CeEEEEE-Eec
Confidence            3  44 999999987642200     011222 223467787777777 9999999 665

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.54  E-value=1.3e-13  Score=110.47  Aligned_cols=165  Identities=15%  Similarity=0.145  Sum_probs=99.2

Q ss_pred             CCceEEEeeceEEecCCcEEEEEEec--c--CceEEEEEcC--ccceee---c-----------cCcceEEEeeeeCCeE
Q psy15235         21 ADGKITYFGDTEIMEGAPINISCILT--I--FEQVKWQLNG--RNINQS---S-----------VDSGFAATANLTEDNF   80 (323)
Q Consensus        21 ~~~~i~~~~~~~v~~G~~v~L~C~~~--~--~~~v~W~~~g--~~~~~~---~-----------~~~~~~~~~~~~~~~~   80 (323)
                      ....+..+.++.+.+|++|+|.|.+.  +  .+.+.|+|+.  ..+...   .           ...+..+..+...+..
T Consensus         6 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (261)
T 2xqy_G            6 DQVQLQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTV   85 (261)
T ss_dssp             -CCEEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEE
T ss_pred             CceeEECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEE
Confidence            45566667788899999999999954  2  4789999963  322110   0           1122222222234567


Q ss_pred             EEEEeeccc--CcceEEEeeccCCcc-c--eeeeeee------CCcee------EEecCCcEEEEEEeecCCCCCCceEE
Q psy15235         81 KYSIHEAIL--ESGYVQSSLFIPRMN-A--ITGNYDI------EPKYK------VFEYRVPFTLKCNVTSPPPGDDYQIV  143 (323)
Q Consensus        81 ~l~i~~~~~--~G~Y~C~~~~~~~~~-~--~~~~~~~------~~~~~------~~~~g~~v~l~C~~~~~~~~~~~~i~  143 (323)
                      .|.|.+++.  +|.|+|.+.+..... .  ....+.+      .|.+.      .+..|+.++|.|.+.+..|. ...|.
T Consensus        86 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~-~i~v~  164 (261)
T 2xqy_G           86 YIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE-PVTLT  164 (261)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSS-CCEEE
T ss_pred             EEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCC-CCEEE
Confidence            788887764  999999998753100 0  0011111      12111      13468999999999886431 24999


Q ss_pred             EEECCeecccccc----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        144 WYKGNKSITEATE----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       144 W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |++++..+.....    ..+.+ .....|.|.+...+| |.|+|.+ .+.
T Consensus       165 W~k~g~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-g~YtC~v-~n~  211 (261)
T 2xqy_G          165 WNSGSLSSGVHTFPAVLQSDLY-TLSSSVTVTSSTWPS-QSITCNV-AHP  211 (261)
T ss_dssp             EGGGTCCTTEEECCCEEETTEE-EEEEEEEEETTTTTT-SCCEEEE-EEG
T ss_pred             EecCCCcCceEecCceecCCcE-EEEEEEEEeccccCC-CEEEEEE-EEC
Confidence            9999876532000    01122 234578888887777 9999999 665

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.53  E-value=1.2e-13  Score=109.33  Aligned_cols=163  Identities=13%  Similarity=0.175  Sum_probs=97.4

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc------CceEEEEEcC--cccee----e---------------ccCcceEEEeee
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI------FEQVKWQLNG--RNINQ----S---------------SVDSGFAATANL   75 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~------~~~v~W~~~g--~~~~~----~---------------~~~~~~~~~~~~   75 (323)
                      ..+..+.++.+.+|++|+|.|...+      ...+.|+|..  .....    .               ....+..+..+.
T Consensus         2 v~l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~   81 (239)
T 3tv3_H            2 PQLQESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDT   81 (239)
T ss_dssp             CEEEEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEG
T ss_pred             ceEecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEEC
Confidence            3566778889999999999999543      3489999942  22111    0               011222222233


Q ss_pred             eCCeEEEEEeeccc--CcceEEEeeccCC----------------c-cceeeeeee--CCcee------EEecCCcEEEE
Q psy15235         76 TEDNFKYSIHEAIL--ESGYVQSSLFIPR----------------M-NAITGNYDI--EPKYK------VFEYRVPFTLK  128 (323)
Q Consensus        76 ~~~~~~l~i~~~~~--~G~Y~C~~~~~~~----------------~-~~~~~~~~~--~~~~~------~~~~g~~v~l~  128 (323)
                      ....+.|.|.+++.  +|.|+|.+.+..+                . ..+.+....  .|.+.      .+..|+.++|.
T Consensus        82 ~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~  161 (239)
T 3tv3_H           82 PKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALG  161 (239)
T ss_dssp             GGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEE
T ss_pred             CCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEE
Confidence            35677788888764  9999999975421                0 011111000  22222      13458999999


Q ss_pred             EEeecCCCCCCceEEEEECCeecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        129 CNVTSPPPGDDYQIVWYKGNKSITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       129 C~~~~~~~~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      |.+.+..|. ...+.|++++..+...     ...++.+ .....|.|.....+| |.|+|.+ .+.
T Consensus       162 C~~~~~~p~-~~~v~W~~~g~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-~~ytC~v-~h~  223 (239)
T 3tv3_H          162 CLVKDYFPE-PVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK  223 (239)
T ss_dssp             EEEEEEBSS-CCEEEEGGGTBCTTEEECCCEECTTSCE-EEEEEEEEEGGGTTT-CCCEEEE-EEG
T ss_pred             EEEeeEeCC-CeEEEEEECCccCceEecCceECCCCCE-EEEEEEEEchhhcCC-CEEEEEE-EEC
Confidence            999885542 3578999988644220     0011222 233568888887788 9999999 665

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.52  E-value=5.4e-14  Score=91.45  Aligned_cols=79  Identities=25%  Similarity=0.488  Sum_probs=61.1

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS  293 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~  293 (323)
                      +..+.+|+.+.|.|.+.+ |.|.+.|++||..+..+ .++.+..  .+  ....|.|.+++.+|+|.|+|.|.|      
T Consensus         5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~-~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C~a~n------   72 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQ-GRVQLEQ--AG--ARQVLRVQGARSGDAGEYLCDAPQ------   72 (84)
T ss_dssp             CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCC-SSEEEEE--CS--SCEEEEESSCSSTTCEEEEEECTT------
T ss_pred             EEEEecCCCEEEEEEECC-CCcEEEEEECCEEcccc-ccEEEee--cC--CeEEEEecCCCCcccEEEEEEECC------
Confidence            456789999999999965 88999999999998754 4444442  11  356899999999999999999854      


Q ss_pred             CCceeEEEEEEcc
Q psy15235        294 QPNEAFVYVRVKG  306 (323)
Q Consensus       294 ~~~~~~~~l~v~~  306 (323)
                        ....+.|.|.+
T Consensus        73 --~~~~a~l~V~e   83 (84)
T 2lu7_A           73 --DSRIFLVSVEE   83 (84)
T ss_dssp             --TCEEEEEEECC
T ss_pred             --EEEEEEEEEEC
Confidence              34566676654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.52  E-value=9.1e-13  Score=104.47  Aligned_cols=160  Identities=13%  Similarity=0.131  Sum_probs=94.3

Q ss_pred             EeeceEEecCCcEEEEEEec----cCceEEEEEcC--cccee---ec-----------cCcceEEEeeeeCCeEEEEEee
Q psy15235         27 YFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNINQ---SS-----------VDSGFAATANLTEDNFKYSIHE   86 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~~---~~-----------~~~~~~~~~~~~~~~~~l~i~~   86 (323)
                      .+..+.+.+|++|+|.|.+.    +...+.|+|+.  ..+..   ..           ...+..+..+...+...|.|.+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (242)
T 1hxm_B            7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (242)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence            35678899999999999954    34789999953  22211   00           1111112112222567788887


Q ss_pred             cc--cCcceEEEeeccCC-c--------cceeeeeeeC-------CceeE-------EecCCcEEEEEEeecCCCCCCce
Q psy15235         87 AI--LESGYVQSSLFIPR-M--------NAITGNYDIE-------PKYKV-------FEYRVPFTLKCNVTSPPPGDDYQ  141 (323)
Q Consensus        87 ~~--~~G~Y~C~~~~~~~-~--------~~~~~~~~~~-------~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~  141 (323)
                      ++  |+|.|+|.+.+... .        ......+...       |...+       +..|+.++|.|.+.+..|. .+.
T Consensus        87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~-~~~  165 (242)
T 1hxm_B           87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD-VIK  165 (242)
T ss_dssp             CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC-CEE
T ss_pred             CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC-CeE
Confidence            65  49999999987531 0        1111111111       11111       2358999999999987542 379


Q ss_pred             EEEEECCe-ecccccc-----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        142 IVWYKGNK-SITEATE-----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       142 i~W~~~~~-~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      |.|++++. .+.....     .++.+ .....|.|.+... + |.|+|.+ .|..+
T Consensus       166 v~W~~~~~~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~-~-g~y~C~v-~n~~~  217 (242)
T 1hxm_B          166 IHWEEKKSNTILGSQEGNTMKTNDTY-MKFSWLTVPEKSL-D-KEHRCIV-RHENN  217 (242)
T ss_dssp             EEEEESSSCCCCCCEECCCEECSSSE-EEEEEEEECTGGG-G-SCEEEEE-EETTS
T ss_pred             EEEEcCCCEeecCccccceecCCCcE-EEEEEEEEccccC-C-CEEEEEE-EeCCC
Confidence            99999987 5532100     11122 2234677877654 4 9999999 67643

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.52  E-value=4.6e-13  Score=105.33  Aligned_cols=161  Identities=13%  Similarity=0.192  Sum_probs=97.1

Q ss_pred             ceEEEeeceEEecCCcEEEEEEec----cCceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILT----IFEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~----~~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+..+..+.+.+|++|+|.|...    +...+.|+|..  ......              ....+..+..+...+.+.|
T Consensus         2 v~v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (230)
T 3n9g_H            2 VQLVQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYM   81 (230)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             cEEEecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEE
Confidence            345667778899999999999953    24689999842  211110              0112233333334567778


Q ss_pred             EEeeccc--CcceEEEeeccCC-----c-----cceeeeee--e--CCceeE------EecCCcEEEEEEeecCCCCCCc
Q psy15235         83 SIHEAIL--ESGYVQSSLFIPR-----M-----NAITGNYD--I--EPKYKV------FEYRVPFTLKCNVTSPPPGDDY  140 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~~-----~-----~~~~~~~~--~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~~  140 (323)
                      .|.+++.  +|.|+|.+.+...     .     ......+.  .  .|.+..      +..|+.++|.|.+.+.+|. ..
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~-~~  160 (230)
T 3n9g_H           82 ELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-PV  160 (230)
T ss_dssp             EECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSS-CC
T ss_pred             EECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECC-CE
Confidence            8887754  9999999976431     0     11111111  1  222211      3478999999999886543 46


Q ss_pred             eEEEEECCeecccccc-------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        141 QIVWYKGNKSITEATE-------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       141 ~i~W~~~~~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+.|  ++..+.....       .++.+ .....|.|.....+| |.|+|.+ .+.
T Consensus       161 ~v~W--~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-~~ytC~v-~h~  211 (230)
T 3n9g_H          161 TVSW--NSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK  211 (230)
T ss_dssp             EEEE--GGGTBCTTEEECCCEECTTSCE-EEEEEEEEESTTBTT-BCCEEEE-EEG
T ss_pred             EEEE--CCcccCCCeEeCCceECCCCCE-EEEEEEEECHHHcCC-CeEEEEE-EEC
Confidence            8999  5544432100       11222 233578888888888 9999999 665

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.52  E-value=4e-13  Score=106.29  Aligned_cols=161  Identities=16%  Similarity=0.260  Sum_probs=93.4

Q ss_pred             EEeeceEEecCCcEEEEEEec-cCceEEEEEcC--ccceee------------ccCcceEEEeeeeCCeEEEEEeecc--
Q psy15235         26 TYFGDTEIMEGAPINISCILT-IFEQVKWQLNG--RNINQS------------SVDSGFAATANLTEDNFKYSIHEAI--   88 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g--~~~~~~------------~~~~~~~~~~~~~~~~~~l~i~~~~--   88 (323)
                      ..+..+.+.+|++|+|.|.+. +.+.+.|+|++  ..+...            ....+..+.. ...+...|.|.+++  
T Consensus         4 q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~-~~~~~~~L~I~~v~~~   82 (238)
T 1bec_A            4 QSPRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQEQFSLILELATPS   82 (238)
T ss_dssp             EECSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEEC-CSSSEEEEEESSCCGG
T ss_pred             cCCCeeEEeCCCcEEEEEEeCCCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEe-cCCCEEEEEEecCCcc
Confidence            446778899999999999953 46789999964  221110            0111111111 12456778888776  


Q ss_pred             cCcceEEEeeccCC--------c-cceeeeee----eCCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECC
Q psy15235         89 LESGYVQSSLFIPR--------M-NAITGNYD----IEPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGN  148 (323)
Q Consensus        89 ~~G~Y~C~~~~~~~--------~-~~~~~~~~----~~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~  148 (323)
                      |+|.|+|.+.+..+        . ..+.+...    ..|.+.+       +..|+.++|.|.+.+..|. ...+.|+++|
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~~~g  161 (238)
T 1bec_A           83 QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPD-HVELSWWVNG  161 (238)
T ss_dssp             GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSC-CEEEEEEETT
T ss_pred             cCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCC-CcEEEEEECC
Confidence            49999999987531        1 11111110    0222222       2358999999999986431 3599999999


Q ss_pred             eeccccccccCc-EEec------eeEEEEeeeecCC-CeeEEEEEEcCC
Q psy15235        149 KSITEATELSGR-LTQS------KDSITIRKTTVDD-AGQYSCRLIDPK  189 (323)
Q Consensus       149 ~~~~~~~~~~~~-~~~~------~~~l~i~~~~~~d-~G~y~C~~~~~~  189 (323)
                      ..+......... ....      ...|.|......| .|.|+|.+ .|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v-~~~  209 (238)
T 1bec_A          162 KEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQV-QFH  209 (238)
T ss_dssp             EEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEE-EEC
T ss_pred             EECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEE-EcC
Confidence            887652111101 1111      1234444443333 67899999 665

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.51  E-value=5.5e-14  Score=94.23  Aligned_cols=80  Identities=23%  Similarity=0.434  Sum_probs=66.1

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+....+.+|+.+.|.|.+.|.| +.+.|++++..+... .++.+.        ...|.|.+++.+|+|.|+|.|.|..|
T Consensus        15 ~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~-~~~~~~--------~~~L~i~~~~~~D~G~Y~C~a~n~~g   84 (95)
T 2ckn_A           15 EVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVES-NRTRIT--------GEEVEVRDSIPADSGLYACVTSSPSG   84 (95)
T ss_dssp             BBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCC-SSEEEC--------SSEEEESSCCGGGSEEEEEEEEETTE
T ss_pred             CcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCC-CCEEEe--------CCEEEECCCChHHCEEEEEEeccCCC
Confidence            34466788999999999999987 799999999887643 344443        57899999999999999999999996


Q ss_pred             CCCCCceeEEEEEE
Q psy15235        291 RNSQPNEAFVYVRV  304 (323)
Q Consensus       291 ~~~~~~~~~~~l~v  304 (323)
                      .    ....+.|.|
T Consensus        85 ~----~~~~~~l~V   94 (95)
T 2ckn_A           85 S----DTTYFSVNV   94 (95)
T ss_dssp             E----EEEEEEEEE
T ss_pred             c----EEEEEEEEE
Confidence            5    777777776

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.51  E-value=4e-13  Score=100.46  Aligned_cols=148  Identities=14%  Similarity=0.183  Sum_probs=90.6

Q ss_pred             eeceEEecCCcEEEEEEec-cCce-EEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecccCcceEEEeeccCCccc
Q psy15235         28 FGDTEIMEGAPINISCILT-IFEQ-VKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAILESGYVQSSLFIPRMNA  105 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~-~~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~G~Y~C~~~~~~~~~~  105 (323)
                      |....|.+|+++.|+|... +.+. +.|...   +...      .. .+...+...|.+.++++.|.|.|.+........
T Consensus         6 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~---l~~~------~~-~~~~~~~~~l~l~~vs~~g~y~C~~~c~~~~~~   75 (185)
T 1iam_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETP---LPKK------EL-LLPGNNRKVYELSNVQEDSQPMCYSNCPDGQST   75 (185)
T ss_dssp             SSEEEEETTEEEEEEEEECSSSCSEEEEECS---SCEE------EE-CSSSSSEEEEEEEEECSCBCCEEEEECSSCEEE
T ss_pred             CCCcEEeCCCCEEEEEEccCCCCccceEEee---CCCc------cE-eccCCceeEEEEEecCcCCEEEEEEECCCCceE
Confidence            4556799999999999954 4454 666531   1111      00 011123345677777777999999965543322


Q ss_pred             eeeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecC
Q psy15235        106 ITGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVD  176 (323)
Q Consensus       106 ~~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  176 (323)
                      ....+.+         .+....+.+|+.++|.|.+.+..|.+...|+|||++..+.... ...  ...+..+++.....+
T Consensus        76 ~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~-~~~--~~~~~tl~~~~~reD  152 (185)
T 1iam_A           76 AKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-AVG--EPAEVTTTVLVRRDH  152 (185)
T ss_dssp             EECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-CCT--TTEEEEEEEECCSSC
T ss_pred             EEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc-CCC--ccccEEEEEeceecc
Confidence            2222222         2332336789999999999997764334699999998886411 000  022345666655555


Q ss_pred             CCeeEEEEEEcCC
Q psy15235        177 DAGQYSCRLIDPK  189 (323)
Q Consensus       177 d~G~y~C~~~~~~  189 (323)
                      |.+.|+|+| .+.
T Consensus       153 ~g~~~sC~A-~~~  164 (185)
T 1iam_A          153 HGAQFSCRT-ELD  164 (185)
T ss_dssp             SSCEEEEEE-EEE
T ss_pred             CCCeEEEEE-Eec
Confidence            555999999 555

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.51  E-value=1.2e-13  Score=108.94  Aligned_cols=164  Identities=12%  Similarity=0.150  Sum_probs=91.7

Q ss_pred             ceEEEeeceE-EecCCcEEEEEEecc------CceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeecc--cCcce
Q psy15235         23 GKITYFGDTE-IMEGAPINISCILTI------FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAI--LESGY   93 (323)
Q Consensus        23 ~~i~~~~~~~-v~~G~~v~L~C~~~~------~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y   93 (323)
                      ..+..+.+.. +..|+.++|.|.+.+      ...++|+++|.++...............-.....|.+....  +.|.|
T Consensus        25 v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~Y  104 (240)
T 4acp_A           25 VFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY  104 (240)
T ss_dssp             EEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCE
T ss_pred             EEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEE
Confidence            3334444454 557999999999543      23799999998875431000000000000111245554443  38999


Q ss_pred             EEEeeccCCccceeeeee------eCCceeEE------ecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc-----
Q psy15235         94 VQSSLFIPRMNAITGNYD------IEPKYKVF------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-----  156 (323)
Q Consensus        94 ~C~~~~~~~~~~~~~~~~------~~~~~~~~------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-----  156 (323)
                      +|.+.+......+...+.      ..|.+.+.      ..|+.++|.|.+.+..|. ...+.|+++|..+.....     
T Consensus       105 tC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~-~i~v~W~k~g~~~~~~~~~~~~~  183 (240)
T 4acp_A          105 KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPS-DIAVEWESNGQPENNYKATPPVL  183 (240)
T ss_dssp             EEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS-CCEEEEEETTEECSSEEECCCEE
T ss_pred             EEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCC-CcEEEEEECCEECCCcCccCceE
Confidence            999998765322221111      13333332      137899999999996542 358999999987643110     


Q ss_pred             -ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        157 -LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       157 -~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                       .++.+ .....|.+......+.|.|+|.+ .+.
T Consensus       184 ~~dgt~-~~~s~L~v~~~~~~~~~~ytC~V-~h~  215 (240)
T 4acp_A          184 DSDGSF-FLYSKLTVDKSRWQQGNVFSCSV-MHE  215 (240)
T ss_dssp             CTTSCE-EEEEEEEEEHHHHHTTCCEEEEE-ECT
T ss_pred             CCCCCE-EEEEEEEEChHHhCCCCEEEEEE-EEC
Confidence             01111 22345556555556789999999 666

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.51  E-value=8.8e-13  Score=103.34  Aligned_cols=168  Identities=17%  Similarity=0.263  Sum_probs=98.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---ccc-----cccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---ITE-----ATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~~-----~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|.+.+.+.. ...+.|||..  ..   +..     .....+|+.      .....|.|.+++.+
T Consensus         7 ~p~~v~v~~G~~vtL~C~~s~~~~~-~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   85 (229)
T 1hxm_A            7 EHQTVPVSIGVPATLRCSMKGEAIG-NYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER   85 (229)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGG-GSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             CCCEEEEcCCCCEEEEeEecCCccC-cceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHh
Confidence            4566678899999999999854311 3589999842  21   110     112245665      23458999999999


Q ss_pred             CCeeEEEEEEcCCCC------CCCCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeec
Q psy15235        177 DAGQYSCRLIDPKST------NTTPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFR  248 (323)
Q Consensus       177 d~G~y~C~~~~~~~~------~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~  248 (323)
                      |+|.|.|.+ .+...      .........|.|........++...+.. ....|.|.+.|. |.+ .+.|+++ ..+..
T Consensus        86 Dsg~Y~C~~-~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~~~  162 (229)
T 1hxm_A           86 DEGSYYCAC-DTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KKITE  162 (229)
T ss_dssp             GCEEEEEEE-ECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SEEEE
T ss_pred             HCeEEEEEE-ecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CEEec
Confidence            999999999 54310      0011122356665411111111122212 235899999875 554 8999999 66643


Q ss_pred             cCCeeeeecCCCCCCcceeEEEeecC-cCCCeEEEEEEeecccC
Q psy15235        249 SQGRIKLSEHPEKGTANSVLQIDEAT-MADRGNYYCHGNNVATR  291 (323)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~y~C~a~n~~g~  291 (323)
                      ........       ...++.+.... .+|.|.|+|.+.|..+.
T Consensus       163 ~~~~~~~~-------~dg~y~~~~~~~~~~~~~ytC~V~h~~~~  199 (229)
T 1hxm_A          163 FDPAIVIS-------PSGKYNAVKLGKYEDSNSVTCSVQHDNKT  199 (229)
T ss_dssp             CCCEEEEC-------TTSSEEEEEEEEETTTTTCEEEEEETTEE
T ss_pred             CccceEEC-------CCCcEEEEECcccCCCCcEEEEEEeCCCC
Confidence            22222111       12333333333 36789999999998743

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.51  E-value=2.6e-13  Score=108.29  Aligned_cols=160  Identities=15%  Similarity=0.200  Sum_probs=93.3

Q ss_pred             eeceEEecCCcEEEEEEec-cCceEEEEEcC--ccce---eec--------cCcceEEEeeeeCCeEEEEEeecc--cCc
Q psy15235         28 FGDTEIMEGAPINISCILT-IFEQVKWQLNG--RNIN---QSS--------VDSGFAATANLTEDNFKYSIHEAI--LES   91 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g--~~~~---~~~--------~~~~~~~~~~~~~~~~~l~i~~~~--~~G   91 (323)
                      +..+.+.+|++|+|.|.+. +.+.+.|+|+.  ....   ...        ...++........+...|.|.+++  |+|
T Consensus        10 p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G   89 (252)
T 1oga_E           10 PKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTA   89 (252)
T ss_dssp             CSEEEEETTCCEEECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCE
T ss_pred             CCeEEEcCCCcEEEEEEeCCCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCE
Confidence            5668899999999999953 46789999953  2111   100        001111111111344566666665  599


Q ss_pred             ceEEEeeccC------Cc-cceeeee----eeCCceeEE-------ecCCcEEEEEEeecCCCCCCceEEEEECCeeccc
Q psy15235         92 GYVQSSLFIP------RM-NAITGNY----DIEPKYKVF-------EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE  153 (323)
Q Consensus        92 ~Y~C~~~~~~------~~-~~~~~~~----~~~~~~~~~-------~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~  153 (323)
                      .|+|.+.+..      +. ..+.+..    ...|.+.+.       ..|+.++|.|.+.+..|. .+.|.|+++|..+..
T Consensus        90 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~~~g~~l~~  168 (252)
T 1oga_E           90 FYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD-HVELSWWVNGKEVHS  168 (252)
T ss_dssp             EEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS-CEEEEEEETTEEECS
T ss_pred             EEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCC-CcEEEEEECCEECCC
Confidence            9999998751      11 1111111    012333332       258999999999986431 359999999987754


Q ss_pred             cccc------------cCcEEeceeEEEEeeeecC-CCeeEEEEEEcCCC
Q psy15235        154 ATEL------------SGRLTQSKDSITIRKTTVD-DAGQYSCRLIDPKS  190 (323)
Q Consensus       154 ~~~~------------~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~  190 (323)
                      ....            +..+ .....|.|...... |.|.|+|.+ .|..
T Consensus       169 ~~~~~~~~~~~~~~~~~gt~-~~~s~L~i~~~~~~d~~~~ytC~v-~~~~  216 (252)
T 1oga_E          169 GVSTDPQPLKEQPALNDSRY-SLSSRLRVSATFWQNPRNHFRCQV-QFYG  216 (252)
T ss_dssp             SEEECSSCEESCTTSTTCCE-EEEEEEEEEHHHHTCTTCEEEEEE-EECC
T ss_pred             CcccccccccccccCCCCCE-EEEEEEEECHHHhccCCCEEEEEE-EcCC
Confidence            2111            1111 22334677665543 577999999 6663

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=110.97  Aligned_cols=171  Identities=19%  Similarity=0.295  Sum_probs=102.0

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc----c---------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT----E---------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~----~---------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ...+.+|++++|.|...+.... ...+.||+.  +....    .         ...+.+|+.      .....|+|.+++
T Consensus        32 ~~~~~~G~~v~L~C~~s~~~~~-~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (267)
T 3u1s_H           32 AEVKKPGSSVKVSCKASGNSFS-NHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT  110 (267)
T ss_dssp             CEEECTTCCEEEEEEEGGGGGG-TSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred             CEEEeCCCcEEEEEEeeCCccC-CCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            3568899999999998652111 468999983  21110    0         112345665      234569999999


Q ss_pred             cCCCeeEEEEEEcC-------CC------------C-CC---CCceeeeeEEE----ecceee-eeceeEEeeCCeEEEE
Q psy15235        175 VDDAGQYSCRLIDP-------KS------------T-NT---TPLAQADFDVI----MKPTAK-LVETLTVIEGEKLRLE  226 (323)
Q Consensus       175 ~~d~G~y~C~~~~~-------~~------------~-~~---~~~~~~~l~v~----~~p~~~-~~~~~~~~~g~~~~l~  226 (323)
                      .+|+|.|.|.+ .+       ..            . ..   .......+.|.    .+|.+. ..+.....+|+.++|.
T Consensus       111 ~~DsG~Y~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~  189 (267)
T 3u1s_H          111 ADDTAIYYCLT-GSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALG  189 (267)
T ss_dssp             GGGCEEEEEEE-EEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEE
T ss_pred             hhhCEEEEEEE-CcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEE
Confidence            99999999999 41       00            0 00   01112345554    244444 2333334679999999


Q ss_pred             EEEec-CC-CCcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        227 CLVVG-SP-PPTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       227 C~~~g-~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      |.+.+ .| ++.+.|  ++..+.............++ ....+.|+|.....+| |.|+|.+.|..+.
T Consensus       190 C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~  254 (267)
T 3u1s_H          190 CLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  254 (267)
T ss_dssp             EEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred             EEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCC
Confidence            99976 45 457999  55444211000000000111 1234679999998889 9999999998844

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=4.7e-14  Score=95.33  Aligned_cols=84  Identities=19%  Similarity=0.379  Sum_probs=69.2

Q ss_pred             ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      ....+.+|+.+.|.|.+.|.| |.+.|++++..+... .++.+.        ...|.|.++..+|+|.|+|.|.|..|. 
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~-~~~~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~~g~-   79 (99)
T 2cr3_A           11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAES-NRTRIT--------GEEVEVQDSVPADSGLYACVTSSPSGS-   79 (99)
T ss_dssp             EECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCC-SSEEEC--------SSEEEETTCCTTTCEEEEEEEEETTEE-
T ss_pred             cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCC-CcEEEE--------CCEEEEccCCHHHCEEEEEEEEeCCce-
Confidence            345677899999999999886 799999999877543 344433        568999999999999999999999966 


Q ss_pred             CCCceeEEEEEEcceecC
Q psy15235        293 SQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       293 ~~~~~~~~~l~v~~~~~~  310 (323)
                         ....+.|.|.+.++.
T Consensus        80 ---~~~~~~l~V~~~~~s   94 (99)
T 2cr3_A           80 ---DTTYFSVNVSDALPS   94 (99)
T ss_dssp             ---EEEEEEECBCSCCSC
T ss_pred             ---EEEEEEEEEecCCCC
Confidence               788888988887654

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.50  E-value=4.4e-14  Score=96.72  Aligned_cols=86  Identities=29%  Similarity=0.444  Sum_probs=69.7

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+..  ..  ...+|.|.+++.+|+|.|+|.|.|..|
T Consensus        20 ~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G   94 (106)
T 1nct_A           20 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS-ARHQVTT--TK--YKSTFEISSVQASDEGNYSVVVENSEG   94 (106)
T ss_dssp             CCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTC-SSEEEEE--CS--SEEEEEECCCCSSCCSEEEECCBCSSC
T ss_pred             CCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCC-CCEEEEE--CC--CEEEEEECcCCchhCEEEEEEEEeCCC
Confidence            445677889999999999999999999999999877543 4444441  11  357999999999999999999999996


Q ss_pred             CCCCCceeEEEEEEc
Q psy15235        291 RNSQPNEAFVYVRVK  305 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~  305 (323)
                      .    ....+.|.|.
T Consensus        95 ~----~~~~~~l~V~  105 (106)
T 1nct_A           95 K----QEAEFTLTIQ  105 (106)
T ss_dssp             B----CCEEEEEEEC
T ss_pred             e----EEEEEEEEEE
Confidence            6    7778888775

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.50  E-value=2.3e-13  Score=91.94  Aligned_cols=90  Identities=18%  Similarity=0.334  Sum_probs=68.3

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .|.+...+....+.+|+.+.|.|.+.|.|   .+.+.|+++|..+....  ..++.    .....|.|.+++.+|+|.|+
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P---~p~v~W~k~g~~i~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   79 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEP---TPEVTWSCGGRKIHSQE--QGRFHIENTDDLTTLIIMDVQKQDGGLYT   79 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEES---CCEEEEEETTEECCTTG--GGTEEEEECSSEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEec---CCEEEEEECceEeeeec--cceeeeecccceEEEEEcCCCccCCEEEE
Confidence            45555566777788999999999999988   78999999999886521  22333    44568999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEE
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      |.| .|..+  ..+..+.|.|.
T Consensus        80 C~a-~N~~G--~~~~~~~l~V~   98 (100)
T 3knb_A           80 LSL-GNEFG--SDSATVNIHIR   98 (100)
T ss_dssp             EEE-EETTE--EEEEEEEEEEE
T ss_pred             EEE-EECCC--EEEEEEEEEEE
Confidence            999 77743  34445555553

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.49  E-value=1.4e-13  Score=116.40  Aligned_cols=159  Identities=9%  Similarity=0.146  Sum_probs=93.2

Q ss_pred             eeceE-EecCCcEEEEEEeccC------ceEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeec--ccCcceEEEee
Q psy15235         28 FGDTE-IMEGAPINISCILTIF------EQVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEA--ILESGYVQSSL   98 (323)
Q Consensus        28 ~~~~~-v~~G~~v~L~C~~~~~------~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~G~Y~C~~~   98 (323)
                      +.... +.+|++++|.|.+.+.      ..|+|+|++..+.....................|.|..+  .|+|.|+|.+.
T Consensus       174 p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~  253 (376)
T 2aty_A          174 PKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVN  253 (376)
T ss_pred             cCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEe
Confidence            33344 7899999999995433      379999998665432100000000001112234555544  35899999998


Q ss_pred             ccCCccceeeee----ee--CCceeE------EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc------cCc
Q psy15235         99 FIPRMNAITGNY----DI--EPKYKV------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL------SGR  160 (323)
Q Consensus        99 ~~~~~~~~~~~~----~~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~------~~~  160 (323)
                      +..........+    .+  .|.+.+      ...|+.++|.|.+.+..|. ...|+|+|||..+......      ++.
T Consensus       254 ~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~-~i~v~W~k~g~~~~~~~~~~~~~~~dgt  332 (376)
T 2aty_A          254 SAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPE-DITVEWQWNGQPAENYKNTQPIMNTNES  332 (376)
T ss_pred             cCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECC-CcEEEEEECCEECCCeEeCCceECCCCC
Confidence            765532221111    11  233322      2247899999999986543 4699999999877431110      111


Q ss_pred             EEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        161 LTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       161 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      + .....|.|.....+|.|.|+|.| .|.
T Consensus       333 y-~~~s~L~i~~~~~~~~~~YtC~v-~h~  359 (376)
T 2aty_A          333 Y-FVYSKLNVQKSNWEAGNTFTCSV-LHE  359 (376)
T ss_pred             E-EEEEEEEEcHHHhCCCCcEEEEE-EeC
Confidence            1 22345666666667889999999 665

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.49  E-value=1.3e-12  Score=108.65  Aligned_cols=186  Identities=17%  Similarity=0.229  Sum_probs=109.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCC-----------CCceEEEEEC--Ce--eccc---cc-----c-ccCc--E-----
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPG-----------DDYQIVWYKG--NK--SITE---AT-----E-LSGR--L-----  161 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~-----------~~~~i~W~~~--~~--~~~~---~~-----~-~~~~--~-----  161 (323)
                      .+....+..|++++|.|.....++.           +...+.||+.  |.  .+..   ..     . ..++  +     
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            4555668899999999988643311           0357999973  32  1110   00     0 1111  1     


Q ss_pred             ------EeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecceeeeeceeE--EeeCC-eEEEEEEEecC
Q psy15235        162 ------TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKPTAKLVETLT--VIEGE-KLRLECLVVGS  232 (323)
Q Consensus       162 ------~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~--~~~g~-~~~l~C~~~g~  232 (323)
                            ...+..|.|.+++.+|+|.|.|.+ .+..  ......+.|.|..+|.+.+.....  +..|+ .++|.|.+.|.
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v-~~~~--~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~Gf  320 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATI-HLPY--LQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHF  320 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEE-EETT--EEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEE
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEE-Eecc--cceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCC
Confidence                  135678999999999999999999 5542  234556677888888776543222  34576 79999999875


Q ss_pred             -CC--CcEEEE-ECCe---eeeccCCe--eeeecCCCC-CCcceeEEEeecCcCCC-eEEEEEEeecccCCCCCceeEEE
Q psy15235        233 -PP--PTVEWR-IGND---TYFRSQGR--IKLSEHPEK-GTANSVLQIDEATMADR-GNYYCHGNNVATRNSQPNEAFVY  301 (323)
Q Consensus       233 -p~--~~~~W~-~~~~---~~~~~~~~--~~~~~~~~~-~~~~~~L~i~~v~~~d~-G~y~C~a~n~~g~~~~~~~~~~~  301 (323)
                       |.  +.+.|. +++.   .+......  .......++ ....+.|.+...+.++. +.|+|.+.|..-. .++....++
T Consensus       321 yP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~-~g~rs~sVt  399 (401)
T 3f8u_B          321 YPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLP-ASGRSAEVT  399 (401)
T ss_dssp             BSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSC-TTCEEEEEE
T ss_pred             cCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCC-CCcceEEEE
Confidence             65  689995 7652   11111100  000100111 12345677776643344 5999999998632 133444444


Q ss_pred             E
Q psy15235        302 V  302 (323)
Q Consensus       302 l  302 (323)
                      |
T Consensus       400 L  400 (401)
T 3f8u_B          400 L  400 (401)
T ss_dssp             C
T ss_pred             e
Confidence            3

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=92.78  Aligned_cols=86  Identities=21%  Similarity=0.215  Sum_probs=68.0

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.+..+.+|+.+.|.|.+  .|.+.+.|++||..+..+ .++.+..  .+  ....|.|.++..+|+|.|+|.|.|.. 
T Consensus        13 ~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~-~r~~i~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~-   84 (100)
T 2yuz_A           13 PLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQES-DRLKVVQ--KG--RIHKLVIANALTEDEGDYVFAPDAYN-   84 (100)
T ss_dssp             CCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCC-SSEEEEE--CS--SEEEEEESSCCGGGCSEEEEEESSSC-
T ss_pred             cCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCC-CcEEEEE--eC--CEEEEEECCCChhhCEEEEEEEcCCC-
Confidence            3446778999999999999  888999999999988643 4554441  11  24689999999999999999999973 


Q ss_pred             CCCCCceeEEEEEEcceec
Q psy15235        291 RNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~~~~  309 (323)
                           ....+.|.|.++|.
T Consensus        85 -----~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           85 -----VTLPAKVHVISGPS   98 (100)
T ss_dssp             -----CCEEEEEEEECCSC
T ss_pred             -----eeEEEEEEEeCCCC
Confidence                 55677788877664

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.49  E-value=2.7e-13  Score=93.13  Aligned_cols=91  Identities=20%  Similarity=0.235  Sum_probs=66.4

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCC---CcEEEEECCeeeecc--CCeeeeecC--CCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPP---PTVEWRIGNDTYFRS--QGRIKLSEH--PEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      .+....+.+|+.++|.|.+.|.|.   |.+.|++++......  ..++.+...  .........|.|.+++.+|+|.|+|
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (108)
T 3cx2_A           10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRC   89 (108)
T ss_dssp             CCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEE
T ss_pred             CCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEE
Confidence            455677899999999999999988   899999987322211  123332210  0111135789999999999999999


Q ss_pred             EEeecccCCCCCceeEEEEEEc
Q psy15235        284 HGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       284 ~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      .|.|..|.    ..+.+.|.|.
T Consensus        90 ~a~N~~G~----~~~~~~L~V~  107 (108)
T 3cx2_A           90 EVSTKDKF----DCSNFNLTVH  107 (108)
T ss_dssp             EEECSSCE----EEEEEEEEEE
T ss_pred             EEecCCCc----eEEEEEEEEe
Confidence            99999965    8888888875

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.49  E-value=3e-13  Score=124.44  Aligned_cols=167  Identities=11%  Similarity=0.112  Sum_probs=106.6

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecC-CCeeEEEEEEcCCCCCCCCceeee
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVD-DAGQYSCRLIDPKSTNTTPLAQAD  200 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~~~~~~~~~~~~~~~~  200 (323)
                      ...+.|.|.+.|.|   .+.+.|.++|..+..         .....+.|..+... ..+.|.|.+ .+..+... ...+.
T Consensus        91 ~g~l~v~c~~~g~P---~p~i~W~k~g~~~~~---------~~~~~~~i~~~~~~~~~l~~~~va-~~~~G~~~-~~~v~  156 (731)
T 2v5y_A           91 PGLLNVYVKVNNGP---LGNPIWNISGDPTRT---------WNRAELAISTFWPNFYQVIFEVIT-SGHQGYLA-IDEVK  156 (731)
T ss_dssp             SEEEEEEEEETTCC---CCSEEEEECCCCCSS---------CEEEEEEECCCTTSCEEEEEEEEE-CSSCCEEE-ECCBE
T ss_pred             cceEEEEEecCCCC---ccceeEEEeCCcCCc---------eeEEEEEEeecCCCceEEEEEEEe-cCCceEEE-EeeEE
Confidence            45789999999988   789999999977643         12223344332112 235666655 44422111 01111


Q ss_pred             eE---EEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEE-EE--ECCeeeeccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        201 FD---VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE-WR--IGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       201 l~---v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      +.   +..+|.+..+.+..+.+|+++.|.|.+.|.|.|.+. |+  +++..+.... ...+.    .....+.|+|.++.
T Consensus       157 ~~~~~~~~~p~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~-~~~~~----~~~~~~~l~I~~~~  231 (731)
T 2v5y_A          157 VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE-IKVTS----SRRFIASFNVVNTT  231 (731)
T ss_dssp             EESSCCSSSCEECCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE-EEECC----SSEEEEEEEECSCC
T ss_pred             eeecccccccccccccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc-eEEec----cccceEEEEEcccc
Confidence            11   113455555567888999999999999999999987 77  6776664321 11111    11135789999999


Q ss_pred             cCCCeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       275 ~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      ..|.|.|+|.|.|..|.   ..+..+.|.|...|.+
T Consensus       232 ~~d~g~Y~c~A~n~~G~---~~s~~~~l~V~~~P~~  264 (731)
T 2v5y_A          232 KRDAGKYRCMIRTEGGV---GISNYAELVVKEPPVP  264 (731)
T ss_dssp             TTTCEEEEEEEEETTEE---EECCCEEEEEECCCCB
T ss_pred             cccCeEEEEEEECCCCC---cceeeEEEEEecCCCC
Confidence            99999999999999964   1344456667666554

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.48  E-value=1.4e-13  Score=91.40  Aligned_cols=77  Identities=21%  Similarity=0.447  Sum_probs=62.5

Q ss_pred             ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      ....+.+|+.+.|.|.+.|+|.|.+.|++++..+...              ....|.|.+++.+|+|.|+|.|.|..|. 
T Consensus        11 ~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-   75 (91)
T 3bfo_A           11 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------------TKKLYMVPYVDLEHQGTYWCHVYNDRDS-   75 (91)
T ss_dssp             CCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC--------------CSSEEEESSCCGGGCEEEEEEEECSSCE-
T ss_pred             CccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC--------------CCCeEEECCCCHHhCEEEEEEEEcCCCC-
Confidence            3556889999999999999999999999999876432              2468999999999999999999999965 


Q ss_pred             CCCceeEEEEEEcc
Q psy15235        293 SQPNEAFVYVRVKG  306 (323)
Q Consensus       293 ~~~~~~~~~l~v~~  306 (323)
                        ..+..+.|.|.+
T Consensus        76 --~~s~~~~l~V~~   87 (91)
T 3bfo_A           76 --QDSKKVEIIIDE   87 (91)
T ss_dssp             --EECCCEEEEEC-
T ss_pred             --EEeeeEEEEEeh
Confidence              133556776654

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.48  E-value=1.6e-13  Score=92.97  Aligned_cols=81  Identities=20%  Similarity=0.346  Sum_probs=65.1

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCe--eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR--IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...+.+|+.+.|.|.+.|.|.+.+.|++++..+......  +....      ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~   90 (100)
T 3caf_A           17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN------QHWSLIMESVVPSDKGNYTCVVENEYGS   90 (100)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG------GGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             EEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEec------CeEEEEEccCCcCCCEEEEEEEEeCCCE
Confidence            456788999999999999999999999999887643221  12221      3468999999999999999999999966


Q ss_pred             CCCCceeEEEEEE
Q psy15235        292 NSQPNEAFVYVRV  304 (323)
Q Consensus       292 ~~~~~~~~~~l~v  304 (323)
                          ....+.|.|
T Consensus        91 ----~~~~~~l~V   99 (100)
T 3caf_A           91 ----INHTYHLDV   99 (100)
T ss_dssp             ----EEEEEEEEE
T ss_pred             ----EEEEEEEEE
Confidence                677777766

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.48  E-value=1.1e-12  Score=104.38  Aligned_cols=162  Identities=15%  Similarity=0.218  Sum_probs=96.3

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEEE
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKYS   83 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l~   83 (323)
                      .+..+.++.+.+|++|+|.|...+    ...+.|+|..  +.+...              ....+.....+.....+.|.
T Consensus         2 ~l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   81 (248)
T 3u2s_H            2 RLVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQ   81 (248)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             ceecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEE
Confidence            456778889999999999999642    4689999842  221110              01222333333335677888


Q ss_pred             Eeeccc--CcceEEEeeccCC--------------------c----cceeeeee--e--CCcee------EEecCCcEEE
Q psy15235         84 IHEAIL--ESGYVQSSLFIPR--------------------M----NAITGNYD--I--EPKYK------VFEYRVPFTL  127 (323)
Q Consensus        84 i~~~~~--~G~Y~C~~~~~~~--------------------~----~~~~~~~~--~--~~~~~------~~~~g~~v~l  127 (323)
                      |.+++.  +|.|.|.+.+..+                    .    ......+.  .  .|.+.      .+..|+.++|
T Consensus        82 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L  161 (248)
T 3u2s_H           82 MNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAAL  161 (248)
T ss_dssp             ECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEE
T ss_pred             ECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEE
Confidence            887764  9999999975310                    0    01111111  0  12111      1345899999


Q ss_pred             EEEeecCCCCCCceEEEEECCeecccc-----ccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        128 KCNVTSPPPGDDYQIVWYKGNKSITEA-----TELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       128 ~C~~~~~~~~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .|.+.+..|. ...+.|++++..+...     ...++.+ .....|.|.....+| |.|+|.+ .|.
T Consensus       162 ~C~~~~~~P~-~~~v~W~~~g~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-~~ytC~v-~h~  224 (248)
T 3u2s_H          162 GCLVKDYFPE-PVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK  224 (248)
T ss_dssp             EEEEEEEBSS-CCEEEEGGGTBCTTEEECCCEECTTSCE-EEEEEEEEEGGGBTT-BCCEEEE-EEG
T ss_pred             EEEEeeEECC-CeEEEEeECCccCceeecCceECCCCCE-EEEEEEEEChhhcCC-CeEEEEE-EEC
Confidence            9999886543 4689999988643220     0112222 233567788877778 9999999 665

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.46  E-value=1.9e-12  Score=101.51  Aligned_cols=161  Identities=14%  Similarity=0.198  Sum_probs=96.4

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc----CceEEEEEcC--ccceee--------------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI----FEQVKWQLNG--RNINQS--------------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~g--~~~~~~--------------~~~~~~~~~~~~~~~~~~l   82 (323)
                      ..+..+..+.+.+|++|+|.|....    ...+.|+|..  +.....              ....+..+..+.....+.|
T Consensus         2 v~v~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (226)
T 3mlr_H            2 VQLVESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYL   81 (226)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEE
T ss_pred             ceEEcCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEE
Confidence            3456677788999999999999532    4689999942  221110              0112333333333567788


Q ss_pred             EEeeccc--CcceEEEeeccCC------------c-cceeeeeee--CCceeE------EecCCcEEEEEEeecCCCCCC
Q psy15235         83 SIHEAIL--ESGYVQSSLFIPR------------M-NAITGNYDI--EPKYKV------FEYRVPFTLKCNVTSPPPGDD  139 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~~------------~-~~~~~~~~~--~~~~~~------~~~g~~v~l~C~~~~~~~~~~  139 (323)
                      .|.+++.  +|.|+|.+.+...            . ..+.+....  .|.+..      ...|+.++|.|.+.+..|. .
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~-~  160 (226)
T 3mlr_H           82 QWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-P  160 (226)
T ss_dssp             EESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSS-C
T ss_pred             EECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECC-C
Confidence            8888764  9999999965421            0 011111111  222221      2368999999999886543 4


Q ss_pred             ceEEEEECCeeccccc-------cccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        140 YQIVWYKGNKSITEAT-------ELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       140 ~~i~W~~~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..+.|  ++..+....       ..++.+ .....|.|.+...+| |.|+|.+ .+.
T Consensus       161 ~~v~W--~~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~~-~~ytC~v-~h~  212 (226)
T 3mlr_H          161 VTVSW--NSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNV-NHK  212 (226)
T ss_dssp             CEEEE--GGGTCCTTEEECCCEECTTSCE-EEEEEEEEEGGGTTT-CCCEEEE-EEG
T ss_pred             eEEEE--CCccccCCeEeCCcEECCCCCE-EEEEEEEECHhHcCC-CeEEEEE-EEC
Confidence            68999  443332100       011222 223468888888788 9999999 665

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.46  E-value=3.3e-13  Score=90.41  Aligned_cols=84  Identities=25%  Similarity=0.366  Sum_probs=67.6

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +....+.+|+.+.|.|.+.+  .|.+.|++++..+... .++.+.        ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~-~~~~~~--------~~~L~i~~~~~~D~G~Y~C~a~n~~g~   76 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPN-NRTVLI--------GEYLQIKGATPRDSGLYACTAARTVDS   76 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCC-SSEEEE--------TTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCC-ceEEEe--------CCEEEECcCCcccCEEEEEEEccCCCc
Confidence            44567889999999999986  5799999999888543 444444        568999999999999999999999955


Q ss_pred             CCCCceeEEEEEEcceecC
Q psy15235        292 NSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       292 ~~~~~~~~~~l~v~~~~~~  310 (323)
                          ....+.|.|.+++..
T Consensus        77 ----~~~~~~l~V~~~~~~   91 (95)
T 4hwu_A           77 ----ETWIFMVNVTDAAEN   91 (95)
T ss_dssp             ----EEEEEEEEECCC---
T ss_pred             ----EEEEEEEEEeCCccc
Confidence                888899999887654

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=6e-14  Score=94.25  Aligned_cols=79  Identities=22%  Similarity=0.353  Sum_probs=64.3

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...              ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        17 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~   82 (96)
T 2ens_A           17 PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP--------------PSPVLILPEIGPQDQGTYSCVATHSSHG   82 (96)
T ss_dssp             STTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC--------------CCSEEEEESCCTTTCEEEECEECCSSCC
T ss_pred             CCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC--------------CCCEEEECCCCcccCEEEEEEEEeCCCC
Confidence            33566889999999999999999999999998876432              2578999999999999999999997654


Q ss_pred             CCCCceeEEEEEEcc
Q psy15235        292 NSQPNEAFVYVRVKG  306 (323)
Q Consensus       292 ~~~~~~~~~~l~v~~  306 (323)
                        ...+..+.|.|.+
T Consensus        83 --~~~s~~~~v~V~~   95 (96)
T 2ens_A           83 --PQESRAVSISIIE   95 (96)
T ss_dssp             --CEECCCEEEEECC
T ss_pred             --cEEEEEEEEEEeC
Confidence              3355667777764

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.46  E-value=8.8e-13  Score=106.53  Aligned_cols=175  Identities=14%  Similarity=0.140  Sum_probs=107.9

Q ss_pred             eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec-cccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI-TEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       112 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      +.|+...+.+|+++.|.|.+....   ...+.|.-.  ...+ ..    +    .....+.+.++..+  |.|.|.+ ..
T Consensus         4 v~P~~~~V~~G~sv~l~Cs~~c~~---p~~~~~~t~l~~~~~~~~----g----~~~~~~~l~~v~~~--~~y~C~~-~~   69 (291)
T 1mq8_A            4 VSPSKVILPRGGSVLVTCSTSCDQ---PKLLGIETPLPKKELLLP----G----NNRKVYELSNVQED--SQPMCYS-NC   69 (291)
T ss_dssp             EECSEEEECTTCEEEEEEEECCSS---CSEEEEECSSCCCCCCCS----C----SSEEEEEEESCCSC--CCCEEEE-EC
T ss_pred             EeCCccEEcCCCeEEEEEeCCCCC---CccceEEecCCCcccccC----C----CceEEEEEEecccC--CeEEEEE-Ec
Confidence            445667789999999999997544   235888531  1111 11    0    12235677777643  5799999 54


Q ss_pred             CCCCCCCceeeeeEEEecceee-eec-eeEEeeCCeEEEEEEEecC-CCC--cEEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235        189 KSTNTTPLAQADFDVIMKPTAK-LVE-TLTVIEGEKLRLECLVVGS-PPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGT  263 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v~~~p~~~-~~~-~~~~~~g~~~~l~C~~~g~-p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
                      .  .......+.+.|..+|... +.. ...+.+|+.++|.|.+.|. |..  .++|++++..+......   .     ..
T Consensus        70 ~--~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~---~-----~~  139 (291)
T 1mq8_A           70 P--DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV---G-----EP  139 (291)
T ss_dssp             S--SCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC---B-----TT
T ss_pred             C--CccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC---C-----CC
Confidence            4  2356667778887766322 221 2447889999999999776 443  48999999887533210   1     01


Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecccCCC----CCceeEEEEEEcceecC
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVATRNS----QPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~----~~~~~~~~l~v~~~~~~  310 (323)
                      ...+|++.....+|.+.|+|.|.|..+..+    ...+....|.|...|..
T Consensus       140 ~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~  190 (291)
T 1mq8_A          140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT  190 (291)
T ss_dssp             EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------
T ss_pred             ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCC
Confidence            346677777777777799999999865311    12345567777766543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.45  E-value=2.1e-13  Score=94.99  Aligned_cols=92  Identities=21%  Similarity=0.201  Sum_probs=66.9

Q ss_pred             eeceeEEeeCCeEEEEEEEecC---CCCcEEEEECCeee-e-ccCCeeeeecC--CCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS---PPPTVEWRIGNDTY-F-RSQGRIKLSEH--PEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~~~~~~~-~-~~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      .+.+..+.+|++++|.|.+.+.   |.|.++|+|+.... . ....++.+...  .........|.|.+++.+|+|.|+|
T Consensus        13 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~C   92 (126)
T 2dav_A           13 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRC   92 (126)
T ss_dssp             CCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEE
T ss_pred             cCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEE
Confidence            4566788999999999999764   88999999964211 1 11233333210  1111235889999999999999999


Q ss_pred             EEeecccCCCCCceeEEEEEEcc
Q psy15235        284 HGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       284 ~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      +|.|..|.    .++.+.|.|..
T Consensus        93 evsn~~g~----~~~~~~L~V~~  111 (126)
T 2dav_A           93 EVTYKDKF----DSCSFDLEVHE  111 (126)
T ss_dssp             EEECSSCE----EEECCEEEEEC
T ss_pred             EEEeCCCc----EEEEEEEEEEe
Confidence            99999965    77888888877

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.45  E-value=2.7e-12  Score=96.73  Aligned_cols=163  Identities=16%  Similarity=0.182  Sum_probs=104.8

Q ss_pred             eeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        111 DIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       111 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .+.|+...+..|+++.|.|.+....   ...+.|.-.-  ..+..        ......+.+.+++ +|.+.|.|.+ .-
T Consensus         6 ~v~P~~~~V~~G~Sv~l~Cs~~c~~---p~~~~~~t~l~~~~~~~--------g~~~~~~~ls~vs-~d~~~~~C~~-~c   72 (196)
T 3bn3_B            6 DLQPRVAFVERGGSLWLNCSTNCPR---PERGGLETSLRRNGTQR--------GLRWLARQLVDIR-EPETQPVCFF-RC   72 (196)
T ss_dssp             EEESSEEEEETTEEEEEEEEECCSS---CSEEEEECSSEEEEEEE--------ETTEEEEEEEEEC-SSEECCEEEE-EE
T ss_pred             EEcCCCcEEcCCCeEEEEEeCCCCC---CCccEEEEccCCeeEcc--------ccCceEEEEEEEc-cCCCceEEEE-EC
Confidence            3456667789999999999996544   2367774321  11111        0122347888988 7877799999 33


Q ss_pred             CCCCCCCceeeeeEEEecceee-eec-eeEEeeCCeEEEEEEEecC-CCCc--EEEEECCeeeeccCCeeeeecCCCCCC
Q psy15235        189 KSTNTTPLAQADFDVIMKPTAK-LVE-TLTVIEGEKLRLECLVVGS-PPPT--VEWRIGNDTYFRSQGRIKLSEHPEKGT  263 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v~~~p~~~-~~~-~~~~~~g~~~~l~C~~~g~-p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
                      .  .......+.|+|..+|... +.. ...+.+|+.++|.|.+.+. |...  +.|++++..+....  +. ........
T Consensus        73 ~--~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~--~~-~~~~~~~~  147 (196)
T 3bn3_B           73 A--RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRS--FA-GEPPRARG  147 (196)
T ss_dssp             T--TEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEE--CT-TSCTTCCC
T ss_pred             C--CCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccc--cc-cccccccc
Confidence            3  2456778888888866332 222 2347899999999999775 5444  89999999885322  10 00000001


Q ss_pred             cceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        264 ANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       264 ~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...++++.....+|...|+|.|.+..+.
T Consensus       148 ~t~~~~~~~~r~D~g~~~sC~A~l~l~~  175 (196)
T 3bn3_B          148 AVLTATVLARREDHGANFSCRAELDLRP  175 (196)
T ss_dssp             EEEEEEEECCGGGTTCEEEEEEEEECGG
T ss_pred             eeEEEEEeeeeccCCCeEEEEEEccCCc
Confidence            2356667666655555999999998863

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.3e-13  Score=93.75  Aligned_cols=93  Identities=20%  Similarity=0.270  Sum_probs=68.2

Q ss_pred             eeceeEEeeCCeEEEEEEEecC---CCCcEEEEECCee-eec-cCCeeeeecC--CCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS---PPPTVEWRIGNDT-YFR-SQGRIKLSEH--PEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      .|.+..+.+|++++|.|.+.|.   |.|.|+|+|+... +.. ...++.+...  .........|.|.++..+|+|.|+|
T Consensus        18 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   97 (118)
T 2edn_A           18 KPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRL   97 (118)
T ss_dssp             CCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEE
T ss_pred             CCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEE
Confidence            4567789999999999999875   7889999997421 111 1233333210  1111135889999999999999999


Q ss_pred             EEeecccCCCCCceeEEEEEEcce
Q psy15235        284 HGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       284 ~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      +|.|..|.    .++.+.|.|..+
T Consensus        98 evsn~~g~----~s~~~~L~V~~~  117 (118)
T 2edn_A           98 EVKAKDTC----DSCGFNIDVEAP  117 (118)
T ss_dssp             EEECSSCE----EEEEECCEEECC
T ss_pred             EEEEcCCc----EEEEEEEEEEcC
Confidence            99999966    888999888763

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.45  E-value=6.7e-13  Score=93.37  Aligned_cols=93  Identities=25%  Similarity=0.311  Sum_probs=66.7

Q ss_pred             eeEEeeCCeEEEEEEEecC--CCCcEEEEECCeeeec----cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        214 TLTVIEGEKLRLECLVVGS--PPPTVEWRIGNDTYFR----SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      ...+.+|+.+.|.|.+.|.  |.+.+.|++++..+..    ...+..... .......++|+|.+++.+|+|.|+|.|.|
T Consensus        17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n   95 (122)
T 3s35_X           17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG-SEMKKFLSTLTIDGVTRSDQGLYTCAASS   95 (122)
T ss_dssp             CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEE-TTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccC-CceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence            3467899999999999985  4568999998874321    111111000 00001357899999999999999999999


Q ss_pred             cccCCCCCceeEEEEEEcceecCc
Q psy15235        288 VATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       288 ~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      ..|.    ....+.|.|.++|...
T Consensus        96 ~~g~----~~~~~~l~V~~~p~i~  115 (122)
T 3s35_X           96 GLMT----KKNSTFVRVHEKPFVA  115 (122)
T ss_dssp             SSCE----EEEEEEEEEEEEECC-
T ss_pred             CCCc----eEEEEEEEEeccCeEE
Confidence            9965    7789999999888654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.45  E-value=1e-12  Score=87.38  Aligned_cols=73  Identities=15%  Similarity=0.261  Sum_probs=57.6

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.+..+.+|+.+.|.|.+.+ |++.+.|++||..+..+ .++.+..  ++  ....|.|.+++.+|+|.|+|.|.|..
T Consensus        11 ~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~-~~~~i~~--~g--~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T 1waa_A           11 PLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAAS-PDCEIIE--DG--KKHILILHNCQLGMTGEVSFQAANTK   83 (93)
T ss_dssp             CCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCB-TTEEEEE--ET--TEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred             cCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCC-CCEEEEE--EC--CEEEEEECCCChhhCEEEEEEECCCc
Confidence            344678899999999999976 45789999999988654 4454441  11  24689999999999999999998854

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.44  E-value=1.4e-12  Score=116.77  Aligned_cols=150  Identities=15%  Similarity=0.200  Sum_probs=93.7

Q ss_pred             eceEEecCCcEEEEEEe---ccCceEEEEEcCccceee---------ccCcceEEEeeeeCCeEEEEEeecc--cCcceE
Q psy15235         29 GDTEIMEGAPINISCIL---TIFEQVKWQLNGRNINQS---------SVDSGFAATANLTEDNFKYSIHEAI--LESGYV   94 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~---~~~~~v~W~~~g~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~   94 (323)
                      ..+.+.+|++++|.|.+   .+.+.++|++++..+...         ....+...   ...+  .|.|.+++  |+|.|+
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~--~L~i~~v~~~D~G~Y~  448 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV---LPNG--SLFLPAVGIQDEGIFR  448 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE---CTTS--CEEESSCCGGGCEEEE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE---cCCc--eEEEeccccccCeEEE
Confidence            45778999999999995   356799999987633211         00111111   1123  45555554  599999


Q ss_pred             EEeeccCCcc-ceeeeeee--CC-ce------eEEecCCc-EEEEEEeecC-CCCCCceEEEEECCeeccccccccCcEE
Q psy15235         95 QSSLFIPRMN-AITGNYDI--EP-KY------KVFEYRVP-FTLKCNVTSP-PPGDDYQIVWYKGNKSITEATELSGRLT  162 (323)
Q Consensus        95 C~~~~~~~~~-~~~~~~~~--~~-~~------~~~~~g~~-v~l~C~~~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~  162 (323)
                      |.+.+..+.. .....+.+  .+ ..      ..+..++. +.|.|.+.+. |   .+.|+|+++|..+...   ..++.
T Consensus       449 C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P---~~~i~W~~~g~~l~~~---~~~~~  522 (581)
T 3o3u_N          449 CQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYP---AGTLSWHLDGKPLVPN---EKGVS  522 (581)
T ss_dssp             EEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBS---CCEEEEEETTEECCTT---STTEE
T ss_pred             EEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCC---CCeEEEEECCEECCCC---CCeEE
Confidence            9999876654 22233322  11 11      11334444 4679999885 5   6899999999887641   11111


Q ss_pred             --------------eceeEEEEeeee-cCCCeeEEEEEEcCCC
Q psy15235        163 --------------QSKDSITIRKTT-VDDAGQYSCRLIDPKS  190 (323)
Q Consensus       163 --------------~~~~~l~i~~~~-~~d~G~y~C~~~~~~~  190 (323)
                                    .....|.|.++. .++.|.|+|.+ +|..
T Consensus       523 ~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~-~n~~  564 (581)
T 3o3u_N          523 VKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSF-SPGL  564 (581)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEE-ECSS
T ss_pred             EEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEE-eccC
Confidence                          223568888888 44588999999 6764

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.1e-13  Score=94.87  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=74.4

Q ss_pred             eeeEEEecc-eee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235        199 ADFDVIMKP-TAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMA  276 (323)
Q Consensus       199 ~~l~v~~~p-~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  276 (323)
                      +.|.|..+| .+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+..  . ......|.|.++..+
T Consensus         5 a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~-~~~~~~~--~-~~~~~~L~I~~v~~~   80 (115)
T 2cr6_A            5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN-ELNEIDA--Q-PGGYHVLTLRQLALK   80 (115)
T ss_dssp             CCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCS-SSCCBCC--B-TTTBCCBEECSCCTT
T ss_pred             EEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCC-CcEEEEE--c-CCCEEEEEEcCCChh
Confidence            345555544 333 445678899999999999999999999999999888644 3333321  0 113568999999999


Q ss_pred             CCeEEEEEEeecccCCCCCceeEEEEEEcceecCcCh
Q psy15235        277 DRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGYDR  313 (323)
Q Consensus       277 d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~~~  313 (323)
                      |+|.|+|.+    |.    ....+.|.|.++|..+.+
T Consensus        81 D~G~Y~C~~----g~----~~~~~~L~V~~~p~~~~~  109 (115)
T 2cr6_A           81 DSGTIYFEA----GD----QRASAALRVTEKPSVFSR  109 (115)
T ss_dssp             TCEEEEEEE----TT----EECCEEEEEECCSSCCSS
T ss_pred             hCEEEEEEE----CC----eeEEEEEEEECCCceecc
Confidence            999999993    33    556678888888766543

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.43  E-value=1.1e-12  Score=90.13  Aligned_cols=93  Identities=22%  Similarity=0.390  Sum_probs=69.4

Q ss_pred             eeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCe-eeec------cCCeeeeecCCCCCCcceeEEEeecCcCCCeE
Q psy15235        208 TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGND-TYFR------SQGRIKLSEHPEKGTANSVLQIDEATMADRGN  280 (323)
Q Consensus       208 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  280 (323)
                      .+..+.+..+.+|+++.|.|.+.+.|.+.+.|++++. .+..      ...++.+....   .....|.|.+++.+|+|.
T Consensus         9 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~I~~v~~~D~G~   85 (108)
T 3m45_A            9 QFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS---WHELSISVSDVSLSDEGQ   85 (108)
T ss_dssp             CCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEES---SSEEEEEECSCCGGGCEE
T ss_pred             ccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecC---CCcEEEEECCCChhHCeE
Confidence            3345667788999999999999999989999999876 2211      12244332110   136789999999999999


Q ss_pred             EEEEEeecccCCCCCceeEEEEEEccee
Q psy15235        281 YYCHGNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       281 y~C~a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      |+|.|.| .|.    ....+.|.|.++|
T Consensus        86 Y~C~~~n-~~~----~~~~~~L~V~~~P  108 (108)
T 3m45_A           86 YTCSLFT-MPV----KTSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEECS-SSC----EEEEEEEEEECCC
T ss_pred             EEEEEEc-CCC----cEEEEEEEEEcCC
Confidence            9999999 754    7788888887654

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.43  E-value=8.1e-13  Score=89.03  Aligned_cols=79  Identities=24%  Similarity=0.402  Sum_probs=62.6

Q ss_pred             ceeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        213 ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ....+.+|+.+.|.|.+. +.|.+.+.|++++......  +...        ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus        18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~--~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   87 (98)
T 1gl4_B           18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--RAMD--------FNGILTIRNVQPSDAGTYVCTGSNMFAM   87 (98)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT--TEEE--------ETTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCc--eeec--------CCCEEEEeCCChhhCEEEEEEecCCCCc
Confidence            455788999999999998 6899999999975443211  1111        2568999999999999999999999965


Q ss_pred             CCCCceeEEEEEEc
Q psy15235        292 NSQPNEAFVYVRVK  305 (323)
Q Consensus       292 ~~~~~~~~~~l~v~  305 (323)
                          ....+.|.|.
T Consensus        88 ----~~~~~~l~V~   97 (98)
T 1gl4_B           88 ----DQGTATLHVQ   97 (98)
T ss_dssp             ----EEEEEEEEEC
T ss_pred             ----cccEEEEEEe
Confidence                7778888775

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.42  E-value=4.1e-12  Score=98.07  Aligned_cols=155  Identities=14%  Similarity=0.183  Sum_probs=89.2

Q ss_pred             EeeceEEecCCcEEEEEEecc-CceEEEEEcC--ccceee-------ccCcceEEEee-eeCCeEEEEEeeccc--Ccce
Q psy15235         27 YFGDTEIMEGAPINISCILTI-FEQVKWQLNG--RNINQS-------SVDSGFAATAN-LTEDNFKYSIHEAIL--ESGY   93 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~~-~~~v~W~~~g--~~~~~~-------~~~~~~~~~~~-~~~~~~~l~i~~~~~--~G~Y   93 (323)
                      .+..+.+.+|++|+|.|.... .+.+.|+|..  ..+...       ....+.....+ ...+...|.|.+++.  +|.|
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (207)
T 1ypz_E            7 SPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTY   86 (207)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEccCCcEEEEEEEeCCCeEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEE
Confidence            356688999999999999543 3579999953  222110       01112222211 225567788877654  9999


Q ss_pred             EEEeeccCC---------c------cceeeeee--e--CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccc
Q psy15235         94 VQSSLFIPR---------M------NAITGNYD--I--EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA  154 (323)
Q Consensus        94 ~C~~~~~~~---------~------~~~~~~~~--~--~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~  154 (323)
                      +|.+.+..+         .      ..+.+...  .  .|.+.+..  ..++|.|.+.+..|. .+.+.|+++ ..+...
T Consensus        87 ~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~~--~~~~l~C~~~g~~P~-~~~v~W~~~-~~l~~~  162 (207)
T 1ypz_E           87 FCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMK--NGTNVACLVKDFYPK-EVTISLRSS-KKIVEF  162 (207)
T ss_dssp             EEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEEE--ETTEEEEEEEEESSS-CCEEEEECS-SEEEEC
T ss_pred             EEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEeC--CCCeEEEEEeeEeCC-CeEEEEecC-CcccCC
Confidence            999987531         0      11111110  1  23333332  247999999886542 379999999 665431


Q ss_pred             ccccCcEE-eceeEEEEeeeec-CCCeeEEEEEEcCC
Q psy15235        155 TELSGRLT-QSKDSITIRKTTV-DDAGQYSCRLIDPK  189 (323)
Q Consensus       155 ~~~~~~~~-~~~~~l~i~~~~~-~d~G~y~C~~~~~~  189 (323)
                         ..... .....+.+..... +|.|.|+|.+ .+.
T Consensus       163 ---~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v-~~~  195 (207)
T 1ypz_E          163 ---DPAIVISPSGKYSAVKLGQYGDSNSVTCSV-QHN  195 (207)
T ss_dssp             ---CCEEEECTTSSEEEEECEEESSTTTCEEEE-EET
T ss_pred             ---ccceEEcCCCcEEEEEeecccCCCcEEEEE-EEC
Confidence               11111 2223344434433 6789999999 665

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.42  E-value=3.5e-13  Score=89.05  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=53.4

Q ss_pred             EEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.+|+.+.|.|.+.+ |.+.+.|++||..+..+ .++.+..  ++  ...+|.|.++..+|+|.|+|.|.|..
T Consensus        17 ~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~-~~~~i~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~   84 (91)
T 2lvc_A           17 HAITSECVMLACEVDR-EDAPVRWYKDGQEVEES-DFVVLEN--EG--PHRRLVLPATQPSDGGEFQCVAGDEC   84 (91)
T ss_dssp             ECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCC-SSCEEEE--ET--TEEEEEESSCCGGGCSEEEEECSSCE
T ss_pred             EEECCCcEEEEEEECC-CCcEEEEEECCEEeeee-eeeeEEe--cC--CeEEEEeCCCChhhcEEEEEEEcceE
Confidence            3457999999999965 88899999999988754 4444441  11  24689999999999999999997654

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.42  E-value=1.1e-12  Score=89.26  Aligned_cols=87  Identities=25%  Similarity=0.310  Sum_probs=65.8

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC-eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG-RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+....+.+|+.+.|.|.+.+ |.+.+.|++++..+..... ++.+..  .+  ....|.|.+++.+|+|.|+|.|.|. 
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C~a~n~-   86 (103)
T 1x44_A           13 QLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRV--EG--KKHILIIEGATKADAAEYSVMTTGG-   86 (103)
T ss_dssp             CCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEE--ET--TEEEEEEEEECTTTCSEEEEEETTE-
T ss_pred             cCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEE--cC--CEEEEEECCCCcccCEEEEEEECCC-
Confidence            344667889999999999977 7789999999998865432 334431  11  2478999999999999999999872 


Q ss_pred             cCCCCCceeEEEEEEcceecC
Q psy15235        290 TRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~~~~~~  310 (323)
                             ...+.|.|.++|.+
T Consensus        87 -------~~~~~l~V~~~p~p  100 (103)
T 1x44_A           87 -------QSSAKLSVDLKSGP  100 (103)
T ss_dssp             -------EEEEEEEEECCCSC
T ss_pred             -------cEEEEEEEeCCCCC
Confidence                   35666777766654

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.42  E-value=1.9e-13  Score=106.23  Aligned_cols=157  Identities=12%  Similarity=0.200  Sum_probs=90.4

Q ss_pred             ceEEEeeceEEecCCcEEEEEEecc--C---ceEEEEEcCccceeec------cCcceEEEeeeeCCeEEEEEeecc--c
Q psy15235         23 GKITYFGDTEIMEGAPINISCILTI--F---EQVKWQLNGRNINQSS------VDSGFAATANLTEDNFKYSIHEAI--L   89 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~~--~---~~v~W~~~g~~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~--~   89 (323)
                      ..+..+....+.+|++++|.|.+.+  .   +.+.| + +..+....      ...+..      .....|.|.++.  |
T Consensus         6 v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~------~~~~~L~I~~~~~~D   77 (214)
T 1ow0_A            6 LSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCY------SVSSVLPGCAEPWNH   77 (214)
T ss_dssp             CEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCC------CEEEECTTTHHHHHH
T ss_pred             EEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcE------EEEEEEEEeHHHcCC
Confidence            3444566777899999999999543  2   58999 4 43332210      000100      123355565554  4


Q ss_pred             CcceEEEeeccCCccceeeee---e--eCCceeE-------EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc
Q psy15235         90 ESGYVQSSLFIPRMNAITGNY---D--IEPKYKV-------FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL  157 (323)
Q Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~---~--~~~~~~~-------~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~  157 (323)
                      +|.|+|.+.+..........+   .  ..|.+.+       +..|+.++|.|.+.+.+|. .+.|.|+|||..+......
T Consensus        78 ~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~-~~~v~W~k~g~~l~~~~~~  156 (214)
T 1ow0_A           78 GKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPK-DVLVRWLQGSQELPREKYL  156 (214)
T ss_dssp             TCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSS-CCEEEEEETTEECCGGGSE
T ss_pred             CCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECC-CcEEEEEECCEECCCCcee
Confidence            899999998766443221121   1  1333322       2357889999999986542 3599999999887652100


Q ss_pred             cCc-EEe---cee------EEEEeeeecCCCeeEEEEEEcCC
Q psy15235        158 SGR-LTQ---SKD------SITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       158 ~~~-~~~---~~~------~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ... ...   .+.      .|.+.....++.|.|+|.| .|.
T Consensus       157 ~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v-~n~  197 (214)
T 1ow0_A          157 TWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMV-GHE  197 (214)
T ss_dssp             ECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEE-ECT
T ss_pred             ecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEE-ECC
Confidence            000 112   222      2333333334588999999 666

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.41  E-value=2e-12  Score=89.72  Aligned_cols=91  Identities=22%  Similarity=0.251  Sum_probs=71.3

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .+.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+..    ..++.    .....|.|.++..+|+|.|+
T Consensus         7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p---~p~i~W~k~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   79 (114)
T 2cqv_A            7 GPQIIQFPEDQKVRAGESVELFGKVTGTQ---PITCTWMKFRKQIQE----SEHMKVENSENGSKLTILAARQEHCGCYT   79 (114)
T ss_dssp             CCEESCCCCSEEEETTCCEEEEEEEESSS---SCEEEEEESSSBCCC----SSSEEEEECSSEEEEEETTCCTTTCEEEE
T ss_pred             CCEEEeCCCCeEEeCCCeEEEEEEEEcCC---CCEEEEEECCEECcC----CCCEEEEEcCCEEEEEECCCChhcCEEEE
Confidence            34454566667788999999999999988   789999999988876    44554    23678999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      |.+ .|..+  .....+.|.|..+|
T Consensus        80 C~a-~N~~g--~~~~~~~l~V~~~p  101 (114)
T 2cqv_A           80 LLV-ENKLG--SRQAQVNLTVVDKP  101 (114)
T ss_dssp             EEE-ECSSC--EEECCEEEEEECSC
T ss_pred             EEE-EECCC--cEEEEEEEEEECCC
Confidence            999 77743  34556677776654

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.5e-12  Score=87.83  Aligned_cols=85  Identities=21%  Similarity=0.300  Sum_probs=67.4

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEE
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .+...+....+.+|+++.|.|.+  .+   .+.+.|+|+|..+..    ..++.    .....|.|.++..+|+|.|+|.
T Consensus         9 ~~~~~~~~~~v~~G~~v~l~C~v--~p---~p~v~W~k~g~~l~~----~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~   79 (100)
T 2yuz_A            9 KILTPLTDQTVNLGKEICLKCEI--SE---NIPGKWTKNGLPVQE----SDRLKVVQKGRIHKLVIANALTEDEGDYVFA   79 (100)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEEC--SS---CCCEEEEETTEECCC----CSSEEEEECSSEEEEEESSCCGGGCSEEEEE
T ss_pred             EEeccCCceEEcCCCCEEEEEEe--CC---CCeEEEEECCEECCC----CCcEEEEEeCCEEEEEECCCChhhCEEEEEE
Confidence            33335566678899999999999  45   678999999999876    55554    3346899999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEEEecc
Q psy15235        185 LIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      + .|.    ....++.|.|..+|
T Consensus        80 a-~N~----~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           80 P-DAY----NVTLPAKVHVISGP   97 (100)
T ss_dssp             E-SSS----CCCEEEEEEEECCS
T ss_pred             E-cCC----CeeEEEEEEEeCCC
Confidence            9 775    35677888888766

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.40  E-value=4.8e-13  Score=93.38  Aligned_cols=96  Identities=23%  Similarity=0.329  Sum_probs=63.9

Q ss_pred             ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC----eeeeecCCCCCCcceeEEEeecCcCCCe
Q psy15235        205 MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG----RIKLSEHPEKGTANSVLQIDEATMADRG  279 (323)
Q Consensus       205 ~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G  279 (323)
                      .+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....    .....  ..+......+.+.+++.+|+|
T Consensus         8 ~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~~~D~G   85 (117)
T 2v9t_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL--PSGSLFFLRIVHGRKSRPDEG   85 (117)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEEC--TTSCEEESSCCCBTTBCSSCE
T ss_pred             CCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEe--cCCcEEEEEEEeCCCCcCcCE
Confidence            355555 34466788999999999999999999999999988764321    11111  111111122333366899999


Q ss_pred             EEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        280 NYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       280 ~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      .|+|.|.|..|..   ....+.|.+.
T Consensus        86 ~Y~C~a~N~~G~~---~s~~~~l~~~  108 (117)
T 2v9t_A           86 VYVCVARNYLGEA---VSHDASLEVA  108 (117)
T ss_dssp             EEEEEEEETTEEE---ECCCEEEEEC
T ss_pred             EEEEEEEeCccce---EeeeEEEEhh
Confidence            9999999999862   3344455444

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.39  E-value=3e-12  Score=88.67  Aligned_cols=102  Identities=23%  Similarity=0.288  Sum_probs=75.4

Q ss_pred             CceeeeeEEEec-ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEee
Q psy15235        195 PLAQADFDVIMK-PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       195 ~~~~~~l~v~~~-p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ....+.|.|... |.+. .+....+.+|+.+.|.|.+.+.  |.+.|++++..+... .++.+..  .+  ....|.|.+
T Consensus         7 ~~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~-~~~~~~~--~~--~~~~L~I~~   79 (113)
T 2edh_A            7 GRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDG-DRHSLRQ--DG--ARCELQIRG   79 (113)
T ss_dssp             CCCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCS-SSEEEEE--ET--TEEEEEECS
T ss_pred             CcEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCC-CcEEEEE--CC--CEEEEEECC
Confidence            344556666643 3443 4456788999999999999764  789999999887643 4555441  11  245899999


Q ss_pred             cCcCCCeEEEEEEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       273 v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      +..+|+|.|+|.|    |.    ....+.|.|.+.|..+
T Consensus        80 v~~~D~G~Y~C~a----~~----~~~~~~l~V~~~p~~~  110 (113)
T 2edh_A           80 LVAEDAGEYLCMC----GK----ERTSAMLTVRAMPSGP  110 (113)
T ss_dssp             CCSTTCEEEEEEE----TT----EEEEEEEEECCCCCSS
T ss_pred             CChhhCEEEEEEe----CC----CCEEEEEEEeCCCCCc
Confidence            9999999999999    33    6678889998887654

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.39  E-value=2e-12  Score=91.13  Aligned_cols=91  Identities=22%  Similarity=0.326  Sum_probs=67.6

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec-------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR-------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +....+.+|++++|.|.+.+.|.+.+.|++++..+..       ...++.+..   ......+|+|.+++.+|+|.|+|.
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~   84 (124)
T 3rbg_A            8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH---HSANQLSITVPNVTLQDEGVYKCL   84 (124)
T ss_dssp             EEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEE---EETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEe---CCCCEEEEEECCCChHHCEEEEEE
Confidence            3456788999999999999999999999986654321       234444331   011257899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEcceecC
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      |.|. |.    ....+.|.|...|..
T Consensus        85 a~n~-g~----~~~~~~l~V~~~P~~  105 (124)
T 3rbg_A           85 HYSD-SV----STKEVKVIVLATMKG  105 (124)
T ss_dssp             EESS-SE----EEEEEEEEEECC---
T ss_pred             EEcC-CC----CcEEEEEEEEeCCCC
Confidence            9998 66    778888888877654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=84.79  Aligned_cols=74  Identities=18%  Similarity=0.317  Sum_probs=58.3

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      ..+.+|+.+.|.|.+.+ |   .+.|.|+|||.++..    ..++.    .....|.|.++..+|+|.|+|.| .+.   
T Consensus         6 v~~~~G~~v~l~C~vs~-p---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~n~---   73 (84)
T 2lu7_A            6 VRSTPGGDLELVVHLSG-P---GGPVRWYKDGERLAS----QGRVQLEQAGARQVLRVQGARSGDAGEYLCDA-PQD---   73 (84)
T ss_dssp             EEECTTSCEEEECCCSC-C---STTCEEEETTEECCC----CSSEEEEECSSCEEEEESSCSSTTCEEEEEEC-TTT---
T ss_pred             EEEecCCCEEEEEEECC-C---CcEEEEEECCEEccc----cccEEEeecCCeEEEEecCCCCcccEEEEEEE-CCE---
Confidence            34678999999999865 5   578999999999987    55554    44568999999999999999998 554   


Q ss_pred             CCCceeeeeEEEe
Q psy15235        193 TTPLAQADFDVIM  205 (323)
Q Consensus       193 ~~~~~~~~l~v~~  205 (323)
                         ...+.|.|..
T Consensus        74 ---~~~a~l~V~e   83 (84)
T 2lu7_A           74 ---SRIFLVSVEE   83 (84)
T ss_dssp             ---CEEEEEEECC
T ss_pred             ---EEEEEEEEEC
Confidence               4556666653

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.39  E-value=4e-12  Score=85.73  Aligned_cols=88  Identities=17%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y  181 (323)
                      .|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+..    ..++.     .....|.|.++..+|+|.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~k~g~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   77 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKP---DPECEWYKNGVKIER----SDRIYWYWPEDNVCELVIRDVTGEDSASI   77 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----CSSEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeC---CCEEEEEECCEECCC----CCCEEEEEcCCCEEEEEECCCCcCCCEEE
Confidence            45555566677788999999999999988   789999999998876    33332     3456899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEE
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      +|.+ .|..+  .....+.|.|.
T Consensus        78 ~C~a-~N~~g--~~~~~~~l~V~   97 (99)
T 1g1c_A           78 MVKA-INIAG--ETSSHAFLLVQ   97 (99)
T ss_dssp             EEEE-EETTE--EEEEEEEEEEE
T ss_pred             EEEE-EECCC--cEEEEEEEEEe
Confidence            9999 67633  33444555543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.37  E-value=5.7e-12  Score=85.68  Aligned_cols=88  Identities=18%  Similarity=0.268  Sum_probs=68.0

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .|.+...+....+.+|+.+.|.|.+.+.|   .+.+.|++++..+..    ..++.    .....|.|.++..+|+|.|+
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~i~W~k~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   80 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKP---TAEVKWYHNGVELQE----SSKIHYTNTSGVLTLEILDCHTDDSGTYR   80 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEES---CCEEEEEETTEECCC----CSSEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecC---CCEEEEEECCEECCC----CCCEEEEECCCEEEEEEcCCCcccCEEEE
Confidence            45555566667788999999999999988   789999999998876    44443    34568999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEE
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      |.+ .|..+  .......|.|.
T Consensus        81 C~a-~N~~G--~~~~~~~l~V~   99 (103)
T 3qp3_A           81 AVC-TNYKG--EASDYATLDVT   99 (103)
T ss_dssp             EEE-EETTE--EEEEEEEEEEE
T ss_pred             EEE-EeCCC--cEEEEEEEEEE
Confidence            999 67633  33455555554

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=4.6e-12  Score=85.61  Aligned_cols=91  Identities=23%  Similarity=0.304  Sum_probs=68.6

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      .|.+...+....+..|+.++|.|.+.+.+   .+.+.|++++..+..   ...++. .....|.|.++..+|+|.|+|.+
T Consensus         8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p---~p~v~W~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a   81 (100)
T 2edj_A            8 PPIILQGPANQTLAVDGTALLKCKATGDP---LPVISWLKEGFTFPG---RDPRATIQEQGTLQIKNLRISDTGTYTCVA   81 (100)
T ss_dssp             SCEEEECCCCEEEESSSEEEECCEEECSS---CCEEEEEESSSEESS---SCSSCEECTTCCEEEESCCTTTCCEEEEEE
T ss_pred             CCEEEeCcCCEEEcCCCcEEEEEEEEEcC---CCEEEEEECCEECCC---CCCCEEEcCCCEEEEccCCcccCEEEEEEE
Confidence            34455566666788999999999999988   789999999988763   123333 44567999999999999999999


Q ss_pred             EcCCCCCCCCceeeeeEEEec
Q psy15235        186 IDPKSTNTTPLAQADFDVIMK  206 (323)
Q Consensus       186 ~~~~~~~~~~~~~~~l~v~~~  206 (323)
                       .|..+  .....+.|.|..+
T Consensus        82 -~n~~g--~~~~~~~l~V~~~   99 (100)
T 2edj_A           82 -TSSSG--ETSWSAVLDVTES   99 (100)
T ss_dssp             -ECSSC--CCBCCEEEEEESC
T ss_pred             -EcCCC--CEEEEEEEEEecC
Confidence             77744  3456666666543

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.8e-12  Score=88.19  Aligned_cols=87  Identities=23%  Similarity=0.349  Sum_probs=67.2

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+....+.+|+.+.|.|.+.+ |.+.+.|++++..+... .++.+..  .+  ....|.|.++..+|+|.|+|.|.|.  
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~n~--   85 (103)
T 2edf_A           14 PLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKS-QKYDVVC--EG--TMAMLVIRGASLKDAGEYTCEVEAS--   85 (103)
T ss_dssp             CCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCS-SSEEEEE--ET--TEEEEEESSCCTTTCSEEEEECSSC--
T ss_pred             cCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCC-CCEEEEE--CC--CEEEEEECCCCcccCEEEEEEEccC--
Confidence            344677889999999999987 78899999999887643 3444441  11  2568999999999999999999983  


Q ss_pred             CCCCCceeEEEEEEcceecCc
Q psy15235        291 RNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~~~~~~  311 (323)
                            ...+.|.|.++|...
T Consensus        86 ------~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           86 ------KSTASLHVEEKASGP  100 (103)
T ss_dssp             ------EEEEEEEECCCSSSS
T ss_pred             ------CcEEEEEEeCCCCCC
Confidence                  367778888776654

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=3.1e-12  Score=87.17  Aligned_cols=82  Identities=23%  Similarity=0.337  Sum_probs=62.7

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ  294 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~  294 (323)
                      ..+.+|+.+.|.|.+.+.|.+ +.|++++..+... .++.+..  .+  ....|.|.+++.+|+|.|+|.|.|..     
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~-~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C~a~n~~-----   88 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEES-ELLVVKM--DG--RKHRLILPEAKVQDSGEFECRTEGVS-----   88 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCB-TTBEEEE--ET--TEEEEEESSCCTTTCEEEEEECSSCC-----
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCC-CCEEEEe--CC--CEEEEEECCCChhhCEEEEEEECCce-----
Confidence            578899999999999999888 9999999987644 3333331  01  35689999999999999999999875     


Q ss_pred             CceeEEEEEEcceecC
Q psy15235        295 PNEAFVYVRVKGKSFG  310 (323)
Q Consensus       295 ~~~~~~~l~v~~~~~~  310 (323)
                       .  .+.|.|.++|.+
T Consensus        89 -~--~~~l~V~~~P~p  101 (104)
T 2e6p_A           89 -A--FFGVTVQDPSGP  101 (104)
T ss_dssp             -C--CEEEEEECCCCS
T ss_pred             -E--EEEEEEcCCCCC
Confidence             2  445556655543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.36  E-value=4.7e-12  Score=85.58  Aligned_cols=91  Identities=14%  Similarity=0.312  Sum_probs=66.9

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---eceeEEEEeeeecCCCeeEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      .|.+...+....+..|+.++|.|.+.+.+   .+.+.|++++..+....  ..+..   .....|.|.++..+|+|.|+|
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p---~p~v~W~~~g~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   79 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLP---APDVSWYLNGRTVQSDD--LHKMIVSEKGLHSLIFEVVRASDAGAYAC   79 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEES---CCEEEEEETTEEECCCS--SSCEEEETTTEEEEEESSCCGGGCEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeC---CCEEEEEECCEECcCCC--cEEEEEcCCCeEEEEECCCCcccCEEEEE
Confidence            44555566667788999999999999887   68999999998886511  11222   233589999999999999999


Q ss_pred             EEEcCCCCCCCCceeeeeEEEe
Q psy15235        184 RLIDPKSTNTTPLAQADFDVIM  205 (323)
Q Consensus       184 ~~~~~~~~~~~~~~~~~l~v~~  205 (323)
                      .+ .|..+  .....+.|.|..
T Consensus        80 ~a-~n~~g--~~~~~~~l~V~~   98 (100)
T 2kdg_A           80 VA-KNRAG--EATFTVQLDVLA   98 (100)
T ss_dssp             EE-EETTE--EEEEEEEEEEEC
T ss_pred             EE-EcCCC--eEEEEEEEEEEe
Confidence            99 67733  345555666554

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.36  E-value=2.5e-12  Score=85.68  Aligned_cols=86  Identities=15%  Similarity=0.191  Sum_probs=63.9

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eeccccccccCcEE--eceeEEEEeeeecCCCeeEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      |.+...+....+..|+.+.|.|.+.|.|   .+.+.|++++  ..+..    ..+..  .....|.|.++..+|+|.|+|
T Consensus         3 P~i~~~~~~~~v~~G~~~~l~C~~~g~P---~p~i~W~k~~~~~~~~~----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   75 (93)
T 1wit_A            3 PKILTASRKIKIKAGFTHNLEVDFIGAP---DPTATWTVGDSGAALAP----ELLVDAKSSTTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CEECCCCCEEEECTTBCCEEEEEEECCS---SCEEEEECSTTTCBCST----TSEEEEETTEEEEECTTBCGGGCEEEEE
T ss_pred             CeEEcCCCceEEeCCCEEEEEEEEEEcC---CCEEEEEECCCCcccCC----cEEEEecCCEEEEEECCCChhcCEEEEE
Confidence            4444455666788999999999999988   7899999999  77754    22222  445789999999999999999


Q ss_pred             EEEcCCCCCCCCceeeeeEE
Q psy15235        184 RLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       184 ~~~~~~~~~~~~~~~~~l~v  203 (323)
                      .| .|..+  .....+.|.|
T Consensus        76 ~a-~N~~G--~~~~~~~l~V   92 (93)
T 1wit_A           76 KV-KNELG--EDEAIFEVIV   92 (93)
T ss_dssp             EE-EETTE--EEEEEEEEEE
T ss_pred             EE-EcCCC--eEEEEEEEEE
Confidence            99 77743  3344444443

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.35  E-value=7.9e-12  Score=83.01  Aligned_cols=81  Identities=11%  Similarity=0.105  Sum_probs=62.0

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEE
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .+...+....+.+|+.++|.|.+.+ +   .+.+.|+|+|.++..    +.++.    .....|.|.+++.+|+|.|+|.
T Consensus         7 ~~~~~~~~~~v~~G~~v~l~C~v~~-~---~~~v~W~k~g~~i~~----~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~   78 (93)
T 1waa_A            7 EVEKPLYGVEVFVGETAHFEIELSE-P---DVHGQWKLKGQPLAA----SPDCEIIEDGKKHILILHNCQLGMTGEVSFQ   78 (93)
T ss_dssp             CEEECCCCEEEETTSCEEEEEEESS-S---SCCCEEEETTEECCC----BTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             EeeccCcceEEeCCCCEEEEEEECC-C---CCeEEEEECCEECcC----CCCEEEEEECCEEEEEECCCChhhCEEEEEE
Confidence            3444556667889999999999976 4   357999999999876    45554    3446899999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEEE
Q psy15235        185 LIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v~  204 (323)
                      + .|.      ..+..|.|.
T Consensus        79 a-~n~------~~sa~L~V~   91 (93)
T 1waa_A           79 A-ANT------KSAANLKVK   91 (93)
T ss_dssp             E-TTE------EEEEEEEEE
T ss_pred             E-CCC------cEEEEEEEE
Confidence            9 664      245555554

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.35  E-value=2.4e-11  Score=91.52  Aligned_cols=150  Identities=13%  Similarity=0.093  Sum_probs=88.1

Q ss_pred             eeceEEecCCcEEEEEEec-cCc-eEEEEEcCccceeeccCcceEEEeeeeCCeEEEEEeeccc-CcceEEEeeccCCcc
Q psy15235         28 FGDTEIMEGAPINISCILT-IFE-QVKWQLNGRNINQSSVDSGFAATANLTEDNFKYSIHEAIL-ESGYVQSSLFIPRMN  104 (323)
Q Consensus        28 ~~~~~v~~G~~v~L~C~~~-~~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~G~Y~C~~~~~~~~~  104 (323)
                      |....|.+|+++.|+|... +.+ .+.|.-.-   ...      .  .+.......+.+.++++ ++.|.|.+.......
T Consensus         9 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l---~~~------~--~~~g~~~~~~~ls~vs~d~~~~~C~~~c~~~~~   77 (196)
T 3bn3_B            9 PRVAFVERGGSLWLNCSTNCPRPERGGLETSL---RRN------G--TQRGLRWLARQLVDIREPETQPVCFFRCARRTL   77 (196)
T ss_dssp             SSEEEEETTEEEEEEEEECCSSCSEEEEECSS---EEE------E--EEEETTEEEEEEEEECSSEECCEEEEEETTEEE
T ss_pred             CCCcEEcCCCeEEEEEeCCCCCCCccEEEEcc---CCe------e--EccccCceEEEEEEEccCCCceEEEEECCCCce
Confidence            4556799999999999954 334 56775421   111      0  01112222356666655 566999987644333


Q ss_pred             ceeeeeee---------CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc--EEeceeEEEEeee
Q psy15235        105 AITGNYDI---------EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR--LTQSKDSITIRKT  173 (323)
Q Consensus       105 ~~~~~~~~---------~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~  173 (323)
                      .....+.+         .+...-+.+|+.++|.|.+.+..|.+..+|+|+|++..+.........  .......+++...
T Consensus        78 ~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~~  157 (196)
T 3bn3_B           78 QARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLAR  157 (196)
T ss_dssp             EEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEECC
T ss_pred             EEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEeee
Confidence            22222222         121112667999999999999877544568999999887541100110  0022355666666


Q ss_pred             ecCCCeeEEEEEEcCC
Q psy15235        174 TVDDAGQYSCRLIDPK  189 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~  189 (323)
                      ..+|...|+|+| .+.
T Consensus       158 r~D~g~~~sC~A-~l~  172 (196)
T 3bn3_B          158 REDHGANFSCRA-ELD  172 (196)
T ss_dssp             GGGTTCEEEEEE-EEE
T ss_pred             eccCCCeEEEEE-Ecc
Confidence            555666999999 554

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=6.9e-13  Score=89.92  Aligned_cols=73  Identities=19%  Similarity=0.331  Sum_probs=57.5

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC---eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG---RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      .+.+..+.+|+.+.|.|.+.+.| +.+.|++++..+.....   ++.+..  .+  ....|.|.++..+|+|.|+|.|.|
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           14 PLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKK--DG--KRHILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             CCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEE--CS--SEEEEECSSCCGGGCSBEEEECSS
T ss_pred             cCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEE--CC--CEEEEEECCCChhhCEEEEEEEcC
Confidence            34457788999999999999888 99999999988765432   334431  11  356899999999999999999997


Q ss_pred             c
Q psy15235        288 V  288 (323)
Q Consensus       288 ~  288 (323)
                      .
T Consensus        89 ~   89 (101)
T 2edk_A           89 G   89 (101)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=5.7e-12  Score=84.99  Aligned_cols=88  Identities=18%  Similarity=0.280  Sum_probs=66.8

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-EeceeEEEEeeeecCCCeeEEEE
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-TQSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      ..|.+...+....+.+|+.++|.|.+.+.|   .+.+.|++++..+..    .... ......|.|.++..+|+|.|+|.
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~~~g~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   82 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTP---VPRITWLLNGQPIQY----ARSTCEAGVAELHIQDALPEDHGTYTCL   82 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEES---CCCCEEEESSSBCSS----CCCEEETTEEEEEECSCCTTCCBCEEEE
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEEeeeC---CCeEEEEECCEECcc----cceEeeCCeEEEEECCCChhhCEEEEEE
Confidence            455566666777788999999999999988   689999999988765    2322 25567899999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEE
Q psy15235        185 LIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v  203 (323)
                      + .|..+.  ....+.|.|
T Consensus        83 a-~N~~g~--~~~~~~l~V   98 (99)
T 2yr3_A           83 A-ENALGQ--VSCSAWVTV   98 (99)
T ss_dssp             E-ECSSCE--EEEECCEEE
T ss_pred             E-EECCCe--EEEEEEEEE
Confidence            9 777433  344444443

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.3e-11  Score=85.34  Aligned_cols=84  Identities=20%  Similarity=0.338  Sum_probs=64.6

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ  294 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~  294 (323)
                      ..+.+|+.+.|.|.+. .|.+.+.|++++..+... .++.+..  .+  ....|.|.+++.+|+|.|+|.|.|.      
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~n~------   90 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVES-PALLLQK--ED--TVRRLVLPAVQLEDSGEYLCEIDDE------   90 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCB-TTBEEEE--CS--SEEEEEESSCCTTTCEEEEEESSSC------
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccC-CCEEEEE--CC--CEEEEEECCCCcccCEEEEEEEecC------
Confidence            5677899999999995 788899999999887644 3444331  11  2468999999999999999999982      


Q ss_pred             CceeEEEEEEcceecCcC
Q psy15235        295 PNEAFVYVRVKGKSFGYD  312 (323)
Q Consensus       295 ~~~~~~~l~v~~~~~~~~  312 (323)
                        ...+.|.|..+|....
T Consensus        91 --~~~~~l~V~~~p~~~~  106 (113)
T 2cpc_A           91 --SASFTVTVTEPPVRII  106 (113)
T ss_dssp             --EEEEEEEEECCCCCCC
T ss_pred             --cEEEEEEEecCCchhc
Confidence              3567777877775544

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.34  E-value=1.6e-11  Score=82.85  Aligned_cols=81  Identities=17%  Similarity=0.299  Sum_probs=63.5

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ  294 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~  294 (323)
                      ..+.+|+.+.|.|.+. .|.+.+.|++++..+... .++.+..  .+  ....|.|.++..+|+|.|+|.|    |.   
T Consensus        18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~-~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~C~a----g~---   84 (100)
T 2yuv_A           18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPS-TKYIFEH--KG--CQRILFINNCQMTDDSEYYVTA----GD---   84 (100)
T ss_dssp             EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCB-TTEEEEE--ET--TEEEEEEEEECTTTCCEEEEEE----TT---
T ss_pred             cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCC-CCEEEEe--cC--CEEEEEEcCCCcCcCEEEEEEE----CC---
Confidence            4677999999999998 788999999999887643 3444431  11  2458999999999999999999    33   


Q ss_pred             CceeEEEEEEcceec
Q psy15235        295 PNEAFVYVRVKGKSF  309 (323)
Q Consensus       295 ~~~~~~~l~v~~~~~  309 (323)
                       ....+.|.|.++|.
T Consensus        85 -~~~~~~l~V~~~P~   98 (100)
T 2yuv_A           85 -EKCSTELFVRSGPS   98 (100)
T ss_dssp             -EEEEEEEEECCSCC
T ss_pred             -ceEEEEEEEecCCC
Confidence             66778888887653

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.34  E-value=1.2e-11  Score=83.27  Aligned_cols=87  Identities=17%  Similarity=0.289  Sum_probs=66.4

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .|.+...+....+.+|+.+.|.|.+.+.+   .+.+.|++++..+..    ..++.    .....|.|.++..+|+|.|+
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p---~p~v~W~~~g~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   78 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEP---RPTAIWTKDGKAITQ----GGKYKLSEDKGGFFLEIHKTDTSDSGLYT   78 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEES---CCEEEEEETTEECCS----SSSEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecC---CCEEEEEECCEECcC----CCCEEEEEeCCEEEEEECCCCcccCEEEE
Confidence            45555566667788999999999999988   689999999998876    45554    23457999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEE
Q psy15235        183 CRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      |.+ .|..+.  ....+.|.|
T Consensus        79 C~a-~n~~g~--~~~~~~l~V   96 (99)
T 3puc_A           79 CTV-KNSAGS--VSSSCKLTI   96 (99)
T ss_dssp             EEE-EETTEE--EEEEEEEEE
T ss_pred             EEE-EeCCCc--EeEEEEEEE
Confidence            999 676332  344444444

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.34  E-value=7.4e-11  Score=92.36  Aligned_cols=156  Identities=15%  Similarity=0.214  Sum_probs=91.6

Q ss_pred             EEeeceEEecCCcEEEEEEec-c---CceEEEEEc--Cccceee---------ccCcceEEEeeeeCCeEEEEEeeccc-
Q psy15235         26 TYFGDTEIMEGAPINISCILT-I---FEQVKWQLN--GRNINQS---------SVDSGFAATANLTEDNFKYSIHEAIL-   89 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~~-~---~~~v~W~~~--g~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~-   89 (323)
                      +.+..+.+.+|++|+|.|.+. .   ...+.|+|.  |+.+..-         ....+.....+...+.+.|.|.+++. 
T Consensus         6 q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   85 (229)
T 1hxm_A            6 PEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER   85 (229)
T ss_dssp             ESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             eCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHh
Confidence            345678899999999999955 2   357999984  3222110         01222323333346677888888764 


Q ss_pred             -CcceEEEeeccCC-----c-------cceeeeee----eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecc
Q psy15235         90 -ESGYVQSSLFIPR-----M-------NAITGNYD----IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT  152 (323)
Q Consensus        90 -~G~Y~C~~~~~~~-----~-------~~~~~~~~----~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~  152 (323)
                       +|.|+|.+.+...     .       ..+.+.-.    ..|.+.+..  ..++|.|.+.+..|. ...|.|+++ ..+.
T Consensus        86 Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~--~~~~L~C~~~g~~P~-~i~v~W~~~-~~~~  161 (229)
T 1hxm_A           86 DEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK--NGTNVACLVKEFYPK-DIRINLVSS-KKIT  161 (229)
T ss_dssp             GCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE--ETTEEEEEEESCBSS-CCEEEEECS-SEEE
T ss_pred             HCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC--CCCeEEEEEEEEeCC-CEEEEEecC-CEEe
Confidence             9999999976521     1       01111110    133333333  345999999987653 359999999 6654


Q ss_pred             ccccccCcEE-eceeEEEEeeee-cCCCeeEEEEEEcCC
Q psy15235        153 EATELSGRLT-QSKDSITIRKTT-VDDAGQYSCRLIDPK  189 (323)
Q Consensus       153 ~~~~~~~~~~-~~~~~l~i~~~~-~~d~G~y~C~~~~~~  189 (323)
                      ..   ..... .....+.+.... .++.|.|+|.+ .+.
T Consensus       162 ~~---~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V-~h~  196 (229)
T 1hxm_A          162 EF---DPAIVISPSGKYNAVKLGKYEDSNSVTCSV-QHD  196 (229)
T ss_dssp             EC---CCEEEECTTSSEEEEEEEEETTTTTCEEEE-EET
T ss_pred             cC---ccceEECCCCcEEEEECcccCCCCcEEEEE-EeC
Confidence            31   11111 222334443333 36789999999 665

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.34  E-value=7.5e-12  Score=87.01  Aligned_cols=94  Identities=17%  Similarity=0.353  Sum_probs=71.1

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCee
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQ  180 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~  180 (323)
                      ..+.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+...   ..++.     .....|.|.+++.+|+|.
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p---~p~v~W~k~~~~~~~~---~~~~~~~~~~~~~~~L~I~~v~~~D~G~   87 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIP---PPKLFWKRNNEMVQFN---TDRISLYQDNTGRVTLLIKDVNKKDAGW   87 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBS---CCEEEEEETTEECCCC---BTTEEEEECTTCEEEEEEEEECGGGCEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccC---CCEEEEEECCEECcCC---CCeEEEEeCCCCeEEEEECCCCcccCEE
Confidence            345555577777899999999999999988   6899999999887641   23443     123389999999999999


Q ss_pred             EEEEEEcCCCCCCCCceeeeeEEEecce
Q psy15235        181 YSCRLIDPKSTNTTPLAQADFDVIMKPT  208 (323)
Q Consensus       181 y~C~~~~~~~~~~~~~~~~~l~v~~~p~  208 (323)
                      |+|.+ .|..+  .....+.|.|..+|.
T Consensus        88 Y~C~a-~N~~G--~~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           88 YTVSA-VNEAG--VTTCNTRLDVTARPN  112 (116)
T ss_dssp             EEEEE-EETTE--EEEEEEEEEEECCSC
T ss_pred             EEEEE-EcCCC--eEEEEEEEEEeCCCC
Confidence            99999 77643  345666777776553

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.33  E-value=7.2e-12  Score=85.17  Aligned_cols=71  Identities=21%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ...+.+|+++.|.|.+ +.|.+.+.|+++|..+.....++.+..  .+  ....|+|.++..+|+|.|+|.|.|..
T Consensus        25 ~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~~~~   95 (104)
T 1pd6_A           25 AYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES--IG--AKRTLTISQCSLADDAAYQCVVGGEK   95 (104)
T ss_dssp             EEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEE--ET--TEEEEEECSCSSSSCEEEEEEETTEE
T ss_pred             cEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEe--cC--CEEEEEECCCCcccCEEEEEEECCCc
Confidence            3678899999999999 688889999999998875534555441  11  24589999999999999999995433

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.33  E-value=1.5e-11  Score=82.92  Aligned_cols=89  Identities=13%  Similarity=0.251  Sum_probs=65.9

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .|.+...+....+..|+.++|.|.+.+.|   .+.+.|++++..+...   ..++.    .....|.|.++..+|+|.|+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~k~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEP---KPVVSWLRNRQPVRPD---QRRFAEEAEGGLCRLRILAAERGDAGFYT   78 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEES---CCEEEEEETTEECCCB---TTEEEEECGGGEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcC---CCEEEEEECCEECCCC---CCEEEEECCCCEEEEEEccCCcCCCEEEE
Confidence            45555666667788999999999999988   6899999999888651   12222    23347999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEE
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      |.+ .|..+.  ....+.|.|.
T Consensus        79 C~a-~N~~g~--~~~~~~l~V~   97 (99)
T 1u2h_A           79 CKA-VNEYGA--RQCEARLEVR   97 (99)
T ss_dssp             EEE-EETTEE--EEEEEEEEEE
T ss_pred             EEE-EECCCc--eeEEEEEEEE
Confidence            999 676332  3444455443

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.33  E-value=7.8e-12  Score=87.07  Aligned_cols=91  Identities=19%  Similarity=0.226  Sum_probs=66.2

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCC--CCCCceEEEEECCee-ccccccccCcEE----------eceeEEEEeeee
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPP--PGDDYQIVWYKGNKS-ITEATELSGRLT----------QSKDSITIRKTT  174 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~~~~-~~~~~~~~~~~~----------~~~~~l~i~~~~  174 (323)
                      +.|...|+...+.+|++++|.|.+.+.+  |  .+.|.|||+... +..  ....++.          .....|+|.++.
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p--~P~V~W~Kgk~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   83 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLR--KPTIKWFKGKWMDLAS--KAGKHLQLKETFERHSRVYTFEMQIIKAK   83 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSS--CCEEEEEESSSCCHHH--HTTSSEEEEEEEETTTTEEEEEEEECSCC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCC--CCcEEEeeCcCcccCC--CCCceEEEccccccccccceEEEEEccCC
Confidence            4455577778899999999999998751  3  789999997421 111  0011221          135789999999


Q ss_pred             cCCCeeEEEEEEcCCCCCCCCceeeeeEEEe
Q psy15235        175 VDDAGQYSCRLIDPKSTNTTPLAQADFDVIM  205 (323)
Q Consensus       175 ~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~  205 (323)
                      ..|+|.|+|++ .|..  ...+..+.|+|..
T Consensus        84 ~~DaG~Y~Cev-sn~~--g~~~~~~~L~V~~  111 (126)
T 2dav_A           84 DNFAGNYRCEV-TYKD--KFDSCSFDLEVHE  111 (126)
T ss_dssp             TTSCEEEEEEE-ECSS--CEEEECCEEEEEC
T ss_pred             cccCEEEEEEE-EeCC--CcEEEEEEEEEEe
Confidence            99999999999 7873  4567788888887

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=99.33  E-value=3.4e-10  Score=86.33  Aligned_cols=167  Identities=19%  Similarity=0.271  Sum_probs=104.2

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc-------------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE-------------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~-------------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|.++.|.|.+.|+.-. ...+.|+|  .|+.+..             .+..++|+.      .+...|.+.++
T Consensus         8 G~~lvkPG~Sl~lSC~~SG~tf~-~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~sL   86 (254)
T 4f9p_D            8 GAEVVRPGTSVKVSCKASGYAFT-SYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSSL   86 (254)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGG-GCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEEeCCChh-hCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEccC
Confidence            34567889999999999886521 34688987  3432211             234456665      34567899999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEe----cc-----------------eee-eeceeEEeeCCeEEEEEEEec
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIM----KP-----------------TAK-LVETLTVIEGEKLRLECLVVG  231 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----~p-----------------~~~-~~~~~~~~~g~~~~l~C~~~g  231 (323)
                      +.+|++.|.|.. ......  .-.-..++|..    .|                 .+. .|....+.+|+.++|+|.+..
T Consensus        87 ~~eDTAvYYCAr-~~~~d~--WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~  163 (254)
T 4f9p_D           87 TSDDSAVYFCAR-SDYGAY--WGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQ  163 (254)
T ss_dssp             CGGGCEEEECEE-SSSCCE--ECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESS
T ss_pred             CCCCCEEEEEEe-cCCCCC--cCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccC
Confidence            999999999976 433211  11112333322    01                 111 344567889999999999965


Q ss_pred             CCCCcEEEEE--CCee---ee-c-------cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        232 SPPPTVEWRI--GNDT---YF-R-------SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       232 ~p~~~~~W~~--~~~~---~~-~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .-...+.||+  .|+.   +. .       -..|+..+.    .....+|+|..++.+|.+.|.|...+..
T Consensus       164 ~~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~----sgt~ftLtIs~lq~eD~A~YYC~q~~~~  230 (254)
T 4f9p_D          164 SISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSG----SGTEFTLSINSVETEDFGIYFCQQSNSW  230 (254)
T ss_dssp             CCTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEEC----CTTEEEEEEESCCTTCCEEEEEEECSSS
T ss_pred             cccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeee----eCCEEEEEECCCCHHHCEEEEEeecCCC
Confidence            5444699997  2322   11 0       113444331    1135689999999999999999766543

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.8e-12  Score=87.25  Aligned_cols=87  Identities=22%  Similarity=0.336  Sum_probs=66.2

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.+..+.+|+.++|.|.+.+.|.+ .+.|+++|..+... .++.+..  ++  ...+|.|.+++.+|+|.|+|.|.|  
T Consensus        14 ~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~-~r~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~~--   86 (104)
T 2eny_A           14 RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS-SRFQATR--QG--RKYILVVREAAPSDAGEVVFSVRG--   86 (104)
T ss_dssp             CCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBC-SSCEEEE--ET--TEEEEEECSCCTTTCSCEEEEETT--
T ss_pred             cCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCC-CCEEEEE--cC--CEEEEEECCCCHHHCEEEEEEECC--
Confidence            4456788999999999999888754 79999999888644 3444441  11  246899999999999999998854  


Q ss_pred             cCCCCCceeEEEEEEcceecC
Q psy15235        290 TRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~~~~~~  310 (323)
                            ....+.|.|.++|..
T Consensus        87 ------~~~~a~L~V~~~p~~  101 (104)
T 2eny_A           87 ------LTSKASLIVRERSGP  101 (104)
T ss_dssp             ------EEEEECEEEECCCSS
T ss_pred             ------eeEEEEEEEeCCCcC
Confidence                  346777888776643

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.33  E-value=5.4e-12  Score=87.06  Aligned_cols=97  Identities=19%  Similarity=0.331  Sum_probs=65.3

Q ss_pred             ecceee-eeceeEEeeCCeEEEEEEEecC--CCCcEEEEECCeeeeccCCe--eeeecCC-CCCCcceeEEEeecCcCCC
Q psy15235        205 MKPTAK-LVETLTVIEGEKLRLECLVVGS--PPPTVEWRIGNDTYFRSQGR--IKLSEHP-EKGTANSVLQIDEATMADR  278 (323)
Q Consensus       205 ~~p~~~-~~~~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~L~i~~v~~~d~  278 (323)
                      .+|.+. .+....+.+|+.+.|.|.+.+.  |.+.+.|++++..+......  ....... ........|.|.+++.+|+
T Consensus         9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (112)
T 3so5_A            9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE   88 (112)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred             CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC
Confidence            355554 3445678899999999999865  45789999999887543211  1111000 0001247899999999999


Q ss_pred             eEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        279 GNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       279 G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |.|+|.|.|..|.   ..+..+.|.|
T Consensus        89 G~Y~C~a~n~~g~---~~s~~~~l~V  111 (112)
T 3so5_A           89 GXYQCVISNHFGS---SYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEEEETTEE---EECCCEEEEE
T ss_pred             CeEEEEEEeCCCc---EEEeEEEEEe
Confidence            9999999999864   1335555554

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.32  E-value=1.1e-11  Score=82.04  Aligned_cols=81  Identities=15%  Similarity=0.337  Sum_probs=62.9

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .+...|....+.+|+.++|.|.+.+.|   .+.+.|++++..+..         .....|.|.++..+|+|.|+|.+ .|
T Consensus         5 ~i~~~p~~~~v~~G~~~~l~C~~~g~p---~p~i~W~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a-~n   71 (91)
T 3bfo_A            5 QICVEPTSQKLMPGSTLVLQCVAVGSP---IPHYQWFKNELPLTH---------ETKKLYMVPYVDLEHQGTYWCHV-YN   71 (91)
T ss_dssp             EEEECCCCEEECTTSCEEEECEEECSS---CCEEEEEETTEECTT---------CCSSEEEESSCCGGGCEEEEEEE-EC
T ss_pred             EEEECCCccEecCCCcEEEEEEeccCC---CCEEEEEcCCeeCCc---------CCCCeEEECCCCHHhCEEEEEEE-Ec
Confidence            344466667788999999999999988   689999999988876         34568999999999999999999 67


Q ss_pred             CCCCCCCceeeeeEE
Q psy15235        189 KSTNTTPLAQADFDV  203 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v  203 (323)
                      ..+. ..+..+.|.|
T Consensus        72 ~~g~-~~s~~~~l~V   85 (91)
T 3bfo_A           72 DRDS-QDSKKVEIII   85 (91)
T ss_dssp             SSCE-EECCCEEEEE
T ss_pred             CCCC-EEeeeEEEEE
Confidence            6432 1233444444

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.31  E-value=3.7e-12  Score=87.11  Aligned_cols=73  Identities=25%  Similarity=0.275  Sum_probs=58.2

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.+..+.+|+.+.|.|.+.+.|.+ +.|++++..+... .++.+..  .+  ....|.|.++..+|+|.|+|.|.|..
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~   86 (106)
T 2dlt_A           14 DIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPS-KRITISH--VG--RFHKLVIDDVRPEDEGDYTFVPDGYA   86 (106)
T ss_dssp             CCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCC-SSCEEEE--ET--TEEEEEESSCCTTTCSCEEEEEETSC
T ss_pred             CCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCC-CCEEEEE--eC--CEEEEEECCCCcCCCEEEEEEEccCC
Confidence            3446778999999999999988877 9999999887643 3444431  01  24689999999999999999999984

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.30  E-value=6.4e-12  Score=86.22  Aligned_cols=89  Identities=19%  Similarity=0.362  Sum_probs=61.7

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .+...+....+..|+.++|.|.+.+.+   .+.+.|++++..+..    ..++.  .....|.|.++..+|+|.|+|.+ 
T Consensus        12 ~~~~~~~~~~v~~G~~v~l~C~~~g~p---~p~i~W~~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-   83 (108)
T 3kvq_A           12 TITGNLENQTTSIGESIEVSCTASGNP---PPQIMWFKDNETLVE----DSGIVLKDGNRNLTIRRVRKEDEGLYTCQA-   83 (108)
T ss_dssp             CCBSCCCCEEEETTCCEEEECBCC-------CCEEEEESSSBCCC----BTTEEEETTTTEEEECSCCGGGCEEEEEEE-
T ss_pred             ceecCCCCeEEeCCCeEEEEEECcCcC---CCeEEEEECCeEccc----CCCeEEeCCCcEEEEeecCcccCEEEEEEE-
Confidence            333355566788999999999999887   679999999988765    33333  45678999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEecc
Q psy15235        187 DPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      .|..+  .....+.|.|..+|
T Consensus        84 ~n~~g--~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           84 CSVLG--CAKVEAFFIIEGAQ  102 (108)
T ss_dssp             C------CEEEEEEEEEEC--
T ss_pred             EeCCC--ceEEEEEEEEeCCC
Confidence            77733  35556666666544

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.30  E-value=3.8e-12  Score=91.44  Aligned_cols=86  Identities=23%  Similarity=0.359  Sum_probs=62.5

Q ss_pred             ecceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeecc---------CCeeeeecCCCCCCcceeEEEeecC
Q psy15235        205 MKPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRS---------QGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       205 ~~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      .+|.+. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...         ..++.+.. .........|.|.+++
T Consensus        20 ~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~v~   98 (137)
T 3qr2_A           20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHA-TYHQHAASTISIDTLV   98 (137)
T ss_dssp             -CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEE-EESSSEEEEEEECSCC
T ss_pred             CCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEec-ccccccceEEEECCCC
Confidence            355444 455677889999999999999999999999977654321         11222210 0011135789999999


Q ss_pred             cCCCeEEEEEEeecccC
Q psy15235        275 MADRGNYYCHGNNVATR  291 (323)
Q Consensus       275 ~~d~G~y~C~a~n~~g~  291 (323)
                      .+|+|.|+|.|.|..|.
T Consensus        99 ~~D~G~Y~C~a~N~~G~  115 (137)
T 3qr2_A           99 EEDTGTYECRASNDPDR  115 (137)
T ss_dssp             GGGCEEEEEEEECCTTS
T ss_pred             cccCEEEEEEEEecCCc
Confidence            99999999999999976

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.30  E-value=8.2e-12  Score=84.87  Aligned_cols=87  Identities=24%  Similarity=0.404  Sum_probs=65.7

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+....+.+|+.+.|.|.+.+.|.+ +.|++++..+... .++.+..  .+  ....|.|.+++.+|+|.|+|.    .|
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~----~g   83 (103)
T 2e7b_A           14 ALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG-DKYSLRQ--EG--AMLELVVRNLRPQDSGRYSCS----FG   83 (103)
T ss_dssp             CCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCS-SSEEEEE--CS--SEEEEEECSCCTTTCCCEEEE----CS
T ss_pred             cCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCC-CcEEEEE--cC--CEEEEEEccCCcccCEEEEEE----EC
Confidence            3446778899999999999999888 9999999887533 4555542  11  245799999999999999998    43


Q ss_pred             CCCCCceeEEEEEEcceecCc
Q psy15235        291 RNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      .    ....+.|.|.+.|..+
T Consensus        84 ~----~~~~~~l~V~~~p~~~  100 (103)
T 2e7b_A           84 D----QTTSATLTVTALPSGP  100 (103)
T ss_dssp             S----CBCCBCEEEECCCCCS
T ss_pred             C----cEEEEEEEEEeccccc
Confidence            3    4556677777766543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=8.2e-12  Score=87.18  Aligned_cols=92  Identities=21%  Similarity=0.312  Sum_probs=69.6

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      .|.+...+....+..|+.++|.|.+.+.+   .+.+.|++++..+..   ...++. .....|.|.++..+|+|.|+|.+
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p---~p~i~W~k~g~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVATGSP---VPTILWRKDGVLVST---QDSRIKQLENGVLQIRYAKLGDTGRYTCIA   81 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBCCCSS---CCEEEEEESSSBCCT---TSTTEEEEETTEEEEESCCGGGCCCEEEEE
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEEEecC---CCEEEEEECCEECcC---CCCeEEEccCCEEEEccCCcCCCEEEEEEE
Confidence            34444456667788999999999999888   789999999988753   133443 44568999999999999999999


Q ss_pred             EcCCCCCCCCceeeeeEEEecc
Q psy15235        186 IDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       186 ~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                       .|..+.  ....+.|.|..++
T Consensus        82 -~n~~g~--~~~~~~l~V~~~~  100 (118)
T 2eo9_A           82 -STPSGE--ATWSAYIEVQEFG  100 (118)
T ss_dssp             -ECSSCE--EEEECCEEEECCS
T ss_pred             -EcCCCc--EEEEEEEEEEeCC
Confidence             777433  4556677777654

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.30  E-value=2.6e-10  Score=85.05  Aligned_cols=160  Identities=16%  Similarity=0.179  Sum_probs=100.7

Q ss_pred             eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      +.+.|+..++..|+++.|.|.+....   ...+.|-..   +.     +..+.  ..-..+.+.++.  |+|.|.|.+..
T Consensus         5 v~v~P~~~~V~~G~S~~l~Cs~~c~~---p~~~glet~---l~-----~~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c   71 (192)
T 1zxq_A            5 VHVRPKKLAVEPKGSLEVNCSTTCNQ---PEVGGLETS---LN-----KILLDEQAQWKHYLVSNIS--HDTVLQCHFTC   71 (192)
T ss_dssp             EEEESSEEEECTTEEEEEEEEESCSS---CSEEEEECS---SE-----EEEEEEETTEEEEEEEEEC--SCEEEEEEEEE
T ss_pred             EEEeCCCcEEeCCCcEEEEEECCCCC---ccccccccc---cC-----ceEEcCCCCeEEEEEeccc--cCCeeEEEEEC
Confidence            44566777789999999999986433   223455321   11     01111  123468999998  78999999943


Q ss_pred             CCCCCCCCceeeeeEEEecceee-eec-eeEEeeCCeEEEEEEEec-CCCCc--EEEEECCeeeeccCCeeeeecCCCCC
Q psy15235        188 PKSTNTTPLAQADFDVIMKPTAK-LVE-TLTVIEGEKLRLECLVVG-SPPPT--VEWRIGNDTYFRSQGRIKLSEHPEKG  262 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~~~p~~~-~~~-~~~~~~g~~~~l~C~~~g-~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~  262 (323)
                      +.   ......+.|+|..+|... +.. ...+.+|+.++|.|.+.+ .|...  +.|++++..+....  +... .....
T Consensus        72 ~~---~~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~--f~~~-~~~~~  145 (192)
T 1zxq_A           72 SG---KQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYET--FGKA-APAPQ  145 (192)
T ss_dssp             TT---EEEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEE--CCSS-TTCTT
T ss_pred             CC---cceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeecc--cccc-cCcCc
Confidence            32   345678888888877333 332 346889999999999964 56554  89999998875321  1100 01111


Q ss_pred             CcceeEEEeecCcCCCe-EEEEEEeecc
Q psy15235        263 TANSVLQIDEATMADRG-NYYCHGNNVA  289 (323)
Q Consensus       263 ~~~~~L~i~~v~~~d~G-~y~C~a~n~~  289 (323)
                      ....++++ .+..+|.| +|+|.|.-..
T Consensus       146 ~~tv~~~~-~~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          146 EATATFNS-TADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             CEEEEEEE-ECCGGGGGCEEEEEEEEEC
T ss_pred             ceEEEEEE-ecchhhCCceEEEEEEecC
Confidence            11223333 46666777 8999999877

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.30  E-value=4.8e-12  Score=86.45  Aligned_cols=88  Identities=15%  Similarity=0.309  Sum_probs=68.8

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y  181 (323)
                      ..+.+...|....+.+|+++.|.|.+.+.|   .+.+.|++++..+..    ..++.    .....|.|.++..+|+|.|
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p---~p~v~W~k~g~~l~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEP---VPTVTWLRKGQVLST----SARHQVTTTKYKSTFEISSVQASDEGNY   85 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSS---CCBCCBCSSSSCCTT----CSSEEEEECSSEEEEEECCCCSSCCSEE
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcC---CCEEEEEECCEECCC----CCCEEEEECCCEEEEEECcCCchhCEEE
Confidence            344555577777889999999999999988   789999999988866    45554    2357899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEE
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      +|.+ .|..+.  ....+.|.|
T Consensus        86 ~C~a-~N~~G~--~~~~~~l~V  104 (106)
T 1nct_A           86 SVVV-ENSEGK--QEAEFTLTI  104 (106)
T ss_dssp             EECC-BCSSCB--CCEEEEEEE
T ss_pred             EEEE-EeCCCe--EEEEEEEEE
Confidence            9999 787433  455555555

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=2.6e-12  Score=86.14  Aligned_cols=83  Identities=20%  Similarity=0.328  Sum_probs=63.6

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      +.+...|....+.+|+.++|.|.+.+.+   .+.+.|++++..+..         .....|.|.+++.+|+|.|+|.+ .
T Consensus        11 ~~i~~~p~~~~v~~G~~v~l~C~~~g~p---~~~v~W~k~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a-~   77 (96)
T 2ens_A           11 VQLVVEPEGGAVAPGGTVTLTCEVPAQP---SPQIHWMKDGVPLPL---------PPSPVLILPEIGPQDQGTYSCVA-T   77 (96)
T ss_dssp             CCCEEESTTSEECTTCEEEEECCCSSCS---SCCCCCEESSSBCSS---------CCCSEEEEESCCTTTCEEEECEE-C
T ss_pred             CEEEECCCCCEEcCCCeEEEEEEEccCC---CCEEEEEECCEECcC---------CCCCEEEECCCCcccCEEEEEEE-E
Confidence            3444455556688999999999999887   679999999988865         34678999999999999999999 7


Q ss_pred             CCCCCCCCceeeeeEE
Q psy15235        188 PKSTNTTPLAQADFDV  203 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v  203 (323)
                      |..+....+..+.|.|
T Consensus        78 n~~~~~~~s~~~~v~V   93 (96)
T 2ens_A           78 HSSHGPQESRAVSISI   93 (96)
T ss_dssp             CSSCCCEECCCEEEEE
T ss_pred             eCCCCcEEEEEEEEEE
Confidence            7533333444445544

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.30  E-value=2.7e-11  Score=80.92  Aligned_cols=80  Identities=20%  Similarity=0.279  Sum_probs=61.0

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +....+.+|+.+.|.|.+ +.|.+.+.|++++..+... .++.+..  .+  ....|.|.+++.+|+|.|+|.|    |.
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a----g~   84 (95)
T 2k1m_A           15 PRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISAS-NKYGLAT--EG--TRHTLTVREVGPADQGSYAVIA----GS   84 (95)
T ss_dssp             CCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSS-TTCEEEE--ET--TEEEEEESSCCTTCCSEEEEEE----TT
T ss_pred             CCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCC-CcEEEEE--cC--CEEEEEEcCCCcccCEEEEEEE----CC
Confidence            446678899999999999 7888899999999888643 3444431  11  2468999999999999999999    33


Q ss_pred             CCCCceeEEEEEEc
Q psy15235        292 NSQPNEAFVYVRVK  305 (323)
Q Consensus       292 ~~~~~~~~~~l~v~  305 (323)
                          ....+.|.|.
T Consensus        85 ----~~~~~~l~V~   94 (95)
T 2k1m_A           85 ----SKVKFDLKVI   94 (95)
T ss_dssp             ----EEEEEEEEEE
T ss_pred             ----ceEEEEEEEe
Confidence                4455666664

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.29  E-value=3.6e-11  Score=80.66  Aligned_cols=81  Identities=19%  Similarity=0.289  Sum_probs=62.2

Q ss_pred             CCceeEEecCCcEEEEEEeecC-CCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSP-PPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      .+....+.+|+.++|.|.+.+. +   .+.+.|++++..+..    ..++.    .....|.|.++..+|+|.|+|.+ .
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~~p---~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~   78 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKIENYDQ---STQVTWYFGVRQLEN----SEKYEITYEDGVAILYVKDITKLDDGTYRCKV-V   78 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEEESCCT---TCEEEEEETTEECCS----SSSEEEEEETTEEEEEECSCCGGGCEEEEEEE-E
T ss_pred             cCcCEEEcCCCcEEEEEEEeccCC---CCEEEEEECCEECcC----CCCEEEEEcCCeEEEEEecCChhhCeEEEEEE-E
Confidence            4556678899999999999997 5   689999999998876    44543    33458999999999999999999 7


Q ss_pred             CCCCCCCCceeeeeEE
Q psy15235        188 PKSTNTTPLAQADFDV  203 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v  203 (323)
                      |..+  .....+.|.|
T Consensus        79 n~~g--~~~~~~~l~V   92 (97)
T 2bk8_A           79 NDYG--EDSSYAELFV   92 (97)
T ss_dssp             CSSC--EEEEEEEEEE
T ss_pred             CCCC--eEeEEEEEEE
Confidence            7733  2333444444

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=99.29  E-value=2e-10  Score=88.09  Aligned_cols=168  Identities=17%  Similarity=0.291  Sum_probs=101.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc----c----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT----E----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~----~----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+..|++++|.|.+...-   ...+.||+  .|+...    .    .....+||.    ....+|+|.+++.+|+
T Consensus         7 sP~sls~s~G~~vtisC~~S~~i---~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sgt~ftLtIs~lq~eD~   83 (259)
T 4f9l_D            7 SPSSLSASLGDTITITCHASQNI---NLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSATGFTLTISSLQPEDI   83 (259)
T ss_dssp             ECSBCCBCTTCEEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             cCCeEEECCCCCEEEEEEcCCCC---CCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccCCeEEEEEcccChhhC
Confidence            35555677899999999876544   34589997  333211    1    011134565    3456899999999999


Q ss_pred             eeEEEEEEcCCCCCCCCceeeeeEEEe---cc--------------------eeeeeceeEEeeCCeEEEEEEEecCCC-
Q psy15235        179 GQYSCRLIDPKSTNTTPLAQADFDVIM---KP--------------------TAKLVETLTVIEGEKLRLECLVVGSPP-  234 (323)
Q Consensus       179 G~y~C~~~~~~~~~~~~~~~~~l~v~~---~p--------------------~~~~~~~~~~~~g~~~~l~C~~~g~p~-  234 (323)
                      +.|.|.. ......... .-..|+|..   .|                    .+.......+++|+++.|.|.+.|..- 
T Consensus        84 A~YyC~~-~~~~~~tFG-~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tfs  161 (259)
T 4f9l_D           84 ATYYCQQ-GHSYPYTFG-GGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTFT  161 (259)
T ss_dssp             EEEEEEE-CSSSSCCBC-CCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCGG
T ss_pred             EEEEEee-cCCCCCCcc-CCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCcc
Confidence            9999987 333111000 001122110   01                    011222455888999999999988742 


Q ss_pred             -CcEEEEE--CCeeee----------------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        235 -PTVEWRI--GNDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       235 -~~~~W~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                       -.+.|.|  .|+.++                .-.+|++++.  ++......|.+++++.+|...|.|....
T Consensus       162 ~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISr--D~s~nt~yLqm~sL~~eDTAvYYCAr~~  231 (259)
T 4f9l_D          162 RYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTV--DKSSRTTYIQLSSLTSEDSAVYYCSRED  231 (259)
T ss_dssp             GSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEE--EccccEEEEEECCCChHHCEEEEEEEeC
Confidence             3588887  233221                1134666663  2333466799999999999999996543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.29  E-value=5.1e-12  Score=106.24  Aligned_cols=108  Identities=15%  Similarity=0.246  Sum_probs=62.5

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT  193 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  193 (323)
                      +....+.+|+.+.|.|.+.+ +   .+.|.|++++..+........++......|.|.+++.+|+|.|+|.| .|.  .+
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p---~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~--~g  325 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-Q---GMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYA-MGE--TF  325 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-T---TCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEE-ECS--SC
T ss_pred             ccCceecCCCeEEEEeEeeC-C---CCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEE-ecC--CC
Confidence            34456889999999999988 6   67999999776554322222344434567999999999999999999 777  33


Q ss_pred             CCceeeeeEEEecceeeeeceeEEeeCCeEEEEEEEecCCCCcEE
Q psy15235        194 TPLAQADFDVIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVE  238 (323)
Q Consensus       194 ~~~~~~~l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~  238 (323)
                      ..+..+.+.|...+          ..|+.++|.|.+.|.|+|.++
T Consensus       326 ~~~~~~~l~V~~~~----------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          326 NETLSVELKVYNFT----------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEEEEEEEESSC----------CC-------------------
T ss_pred             ccEEEEEEEEEeee----------ccCCceEEEEEeCCCCCCccc
Confidence            34455555554322          578899999999999998763

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.29  E-value=6.3e-12  Score=82.97  Aligned_cols=62  Identities=21%  Similarity=0.416  Sum_probs=51.1

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +.+|+.+.|.|.+.+ +   .+.+.|+|||.++..    +.++.    .....|.|.++..+|+|.|+|.| .|.
T Consensus        18 ~~~g~~v~l~C~v~~-p---~~~v~W~k~g~~i~~----~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~   83 (91)
T 2lvc_A           18 AITSECVMLACEVDR-E---DAPVRWYKDGQEVEE----SDFVVLENEGPHRRLVLPATQPSDGGEFQCVA-GDE   83 (91)
T ss_dssp             CCTTCCEEEEEECSC-T---TSCCEEEETTSCCCC----CSSCEEEEETTEEEEEESSCCGGGCSEEEEEC-SSC
T ss_pred             EECCCcEEEEEEECC-C---CcEEEEEECCEEeee----eeeeeEEecCCeEEEEeCCCChhhcEEEEEEE-cce
Confidence            457999999999865 5   568999999999877    44443    44568999999999999999999 654

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=5e-12  Score=86.00  Aligned_cols=83  Identities=17%  Similarity=0.240  Sum_probs=65.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .+....+.+|+.++|.|.+.+.++  .+.+.|+|+|..+..    ..++.    .....|.|.+++.+|+|.|+|.+ .+
T Consensus        14 ~~~~~~v~~G~~v~l~C~v~~~~~--~~~v~W~k~g~~i~~----~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~~   86 (104)
T 2eny_A           14 RLKTMEVLEGESCSFECVLSHESA--SDPAMWTVGGKTVGS----SSRFQATRQGRKYILVVREAAPSDAGEVVFSV-RG   86 (104)
T ss_dssp             CCCCEEEESSCCEEEEEECSSCCC--SSCBCCBSSSSBCSB----CSSCEEEEETTEEEEEECSCCTTTCSCEEEEE-TT
T ss_pred             cCCCcEEcCCCcEEEEEEEcCCCC--CceeEEEECCEECCC----CCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE-CC
Confidence            555667889999999999988763  347999999998876    44443    34568999999999999999999 55


Q ss_pred             CCCCCCCceeeeeEEEecce
Q psy15235        189 KSTNTTPLAQADFDVIMKPT  208 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v~~~p~  208 (323)
                      .      ..+..|.|..+|.
T Consensus        87 ~------~~~a~L~V~~~p~  100 (104)
T 2eny_A           87 L------TSKASLIVRERSG  100 (104)
T ss_dssp             E------EEEECEEEECCCS
T ss_pred             e------eEEEEEEEeCCCc
Confidence            3      4677788877663

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.2e-11  Score=82.74  Aligned_cols=86  Identities=27%  Similarity=0.371  Sum_probs=64.8

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.+..+.+|+.+.|.|. .+.|.+.+.|++++..+... .++.+..  .+  ....|.|.+++.+|+|.|+|.    .|
T Consensus        14 ~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~-~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~----~g   83 (103)
T 2dku_A           14 ELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRAS-GKHQPSQ--EG--LTLRLTISALEKADSDTYTCD----IG   83 (103)
T ss_dssp             CCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSS-SSEEEEE--ET--TEEEEEEESCCTTTCSEEEEE----CS
T ss_pred             cCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCC-CeEEEEe--CC--CEEEEEECCCCcccCEEEEEE----eC
Confidence            345677899999999999 47888999999999887643 3444431  01  245899999999999999998    43


Q ss_pred             CCCCCceeEEEEEEcceecC
Q psy15235        291 RNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~~~~~  310 (323)
                      .    ....+.|.|.+.|.+
T Consensus        84 ~----~~~~~~l~V~~~p~~   99 (103)
T 2dku_A           84 Q----AQSRAQLLVQGRRSG   99 (103)
T ss_dssp             S----CBCCEEEEEECSCCC
T ss_pred             C----ceEEEEEEEeCccCC
Confidence            3    556677778776654

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.29  E-value=2.4e-11  Score=89.02  Aligned_cols=95  Identities=18%  Similarity=0.299  Sum_probs=71.7

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCee
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQ  180 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~  180 (323)
                      ..|.+...+....+..|+.++|.|.+.+.|   .+.+.|++++..+..    ..++.     .....|.|.++...|+|.
T Consensus        40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~G~  112 (154)
T 1fhg_A           40 VKPYFTKTILDMEVVEGSAARFDCKVEGYP---DPEVMWFKDDNPVKE----SRHFQIDYDEEGNCSLTISEVCGDDDAK  112 (154)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----SSSEEEEECTTCEEEEEESSCCGGGCEE
T ss_pred             CCCeEEccCCcEEEeCCCeEEEEEEEEEec---CCEEEEEECCEECCC----CCcEEEEECCCCeEEEEECCCChhcCEE
Confidence            345555566667788999999999999988   789999999998876    44444     234689999999999999


Q ss_pred             EEEEEEcCCCCCCCCceeeeeEEEecceee
Q psy15235        181 YSCRLIDPKSTNTTPLAQADFDVIMKPTAK  210 (323)
Q Consensus       181 y~C~~~~~~~~~~~~~~~~~l~v~~~p~~~  210 (323)
                      |+|.+ .|..+  .....+.|.|..+|.+.
T Consensus       113 Y~C~a-~N~~G--~~~~~~~l~V~~~p~~~  139 (154)
T 1fhg_A          113 YTCKA-VNSLG--EATCTAELLVETMGKEG  139 (154)
T ss_dssp             EEEEE-EETTE--EEEEEEEEEEECC----
T ss_pred             EEEEE-EECCC--eEEEEEEEEEeCcCcCC
Confidence            99999 77743  35566777777766543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=6.2e-12  Score=86.61  Aligned_cols=92  Identities=17%  Similarity=0.276  Sum_probs=70.4

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCee
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQ  180 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~  180 (323)
                      ..|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+..    ..+..     .....|.|.+++.+|+|.
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p---~p~v~W~~~g~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~D~G~   80 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLP---TPDLSWQLDGKPVRP----DSAHKMLVRENGVHSLIIEPVTSRDAGI   80 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSS---CCEEECBBSSSBCCC----CSSEEEEECTTSCEEEEESSCCGGGCSB
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcC---CCEEEEEECCEECCC----CCceEEEEecCCeEEEEEeeCCcccCEE
Confidence            455666667777888999999999999988   789999999988765    22221     234589999999999999


Q ss_pred             EEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        181 YSCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       181 y~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      |+|.+ .|..+  .....+.|.|..+|
T Consensus        81 Y~C~a-~n~~g--~~~~~~~l~V~~~p  104 (110)
T 2dm3_A           81 YTCIA-TNRAG--QNSFSLELVVAAKE  104 (110)
T ss_dssp             BCEEE-ECSSC--EEEECCEEEEECCC
T ss_pred             EEEEE-ECCCC--EEEEEEEEEEeCCC
Confidence            99999 77743  35566667776644

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=2.5e-11  Score=82.98  Aligned_cols=87  Identities=13%  Similarity=0.134  Sum_probs=66.5

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC--C-------eeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ--G-------RIKLSEHPEKGTANSVLQIDEATMADRGNY  281 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y  281 (323)
                      .+.+..+.+|+.+.|.|.+.+  .+.+.|++||..+..+.  .       ++.+.  .++  ...+|+|.++..+|+|.|
T Consensus        14 ~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~--~~g--~~~~L~I~~v~~~D~G~Y   87 (112)
T 2e6q_A           14 GLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIE--QKG--LQHRLILHAVKHQDSGAL   87 (112)
T ss_dssp             CCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEEC--CBT--TEEEEEEESCCSTTCSEE
T ss_pred             CCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEE--eCC--cEEEEEECCCCHHHCccE
Confidence            445788999999999999987  77899999999997654  1       66655  211  246899999999999999


Q ss_pred             EEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        282 YCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       282 ~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      +|...+.       ...++.|.|.+.|..
T Consensus        88 ~~~~~~~-------~~ssA~L~V~~~p~~  109 (112)
T 2e6q_A           88 VGFSCPG-------VQDSAALTIQESSGP  109 (112)
T ss_dssp             EEEEETT-------EEEEEEEEEECSSCS
T ss_pred             EEEEECC-------eeEEEEEEEeCCCcc
Confidence            7754432       345778888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-10
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-05
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	0.001
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	4e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-08
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.001
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-07
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-06
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	3e-06
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	5e-06
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	8e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	8e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	3e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	4e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	6e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	6e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	7e-05
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	9e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	1e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-04
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	1e-04
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	0.004
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	3e-04
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-04
d3b5ha2	80	b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo s	5e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	9e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	9e-04
d1vcaa1	109	b.1.1.3 (A:91-199) Vascular cell adhesion molecule	0.001
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.001
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	0.002
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.002
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.002
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.003

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 1e-10
 Identities = 23/95 (24%), Positives = 27/95 (28%), Gaps = 9/95 (9%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E   V  GE + L   V G+ P T  W         S+         E     S L I  
Sbjct: 8   EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHM-----KVENSENGSKLTILA 62

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
           A     G Y     N          A V + V  K
Sbjct: 63  ARQEHCGCYTLLVENKLGSRQ----AQVNLTVVDK 93

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
              L   VT   P       W K  K I E+  +    +++   +TI     +  G Y+ 
Sbjct: 17  SVELFGKVTGTQP---ITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTL 73

Query: 184 RLIDPKSTNTTPLAQADFDVIMKPTA 209
            + +   +     AQ +  V+ KP  
Sbjct: 74  LVENKLGSRQ---AQVNLTVVDKPDP 96

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 54.4 bits (130), Expect = 2e-10
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 208 TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSV 267
             K  + + V +G+ + + C V G P P V W          +  +           +S 
Sbjct: 6   EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT----------DSG 55

Query: 268 LQIDEATMADRGNYYCHGNNVA 289
           L I      D+G Y C   N  
Sbjct: 56  LVIKGVKNGDKGYYGCRATNEH 77

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
             T+ C VT  P      +VW    K ++      GR T +   + I+     D G Y C
Sbjct: 20  DVTIPCKVTGLPA---PNVVWSHNAKPLSG-----GRATVTDSGLVIKGVKNGDKGYYGC 71

Query: 184 R 184
           R
Sbjct: 72  R 72

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-09
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
             LTV +G+ ++L C V G   P ++W                            L +  
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHW---IGFLSLKS 60

Query: 273 ATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRVKG 306
              +D G Y+C   +   T  SQP    V++ V+G
Sbjct: 61  VERSDAGRYWCQVEDGGETEISQP----VWLTVEG 91

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 4e-09
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
               V     ++  C   G+P PT+ W      + +           +  +    L ++ 
Sbjct: 13  RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWS----LIMES 68

Query: 273 ATMADRGNYYCHGNNVA 289
              +D+GNY C   N  
Sbjct: 69  VVPSDKGNYTCVVENEY 85

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 124 PFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKD-SITIRKTTVDDAGQY 181
               +C    +P P     + W K  K   +   + G   +++  S+ +      D G Y
Sbjct: 22  TVKFRCPAGGNPMP----TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 77

Query: 182 SCR 184
           +C 
Sbjct: 78  TCV 80

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           ++ TV +G        VVG P P  EW        RS                  L I +
Sbjct: 12  QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN----VCELVIRD 67

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
            T  D  +      N+A   S    +  ++ V+ K
Sbjct: 68  VTGEDSASIMVKAINIAGETS----SHAFLLVQAK 98

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 12/107 (11%)

Query: 206 KP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIG---NDTYFRSQGRIKLSEHPE 260
           +P   A L    + + G  +   C V     P ++W      N + +   G   L     
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 261 KGTA-----NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
            G         VL I   T  D G Y C   N    +     A++ V
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFH--SAWLTV 108

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 11/82 (13%)

Query: 208 TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSV 267
            AK       + G+ + LEC   G+P P ++WR  + +                     +
Sbjct: 8   KAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSS-----------EPL 56

Query: 268 LQIDEATMADRGNYYCHGNNVA 289
           L I      D G Y C   N+ 
Sbjct: 57  LHIQNVDFEDEGTYECEAENIK 78

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (115), Expect = 2e-08
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 6/90 (6%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
                 EGE   + C VV S PPT+ W+         +    +             QI  
Sbjct: 9   TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL------QIRG 62

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYV 302
               D G Y C G  +A       +  V V
Sbjct: 63  IKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM 275
           T   G+ + L C   G P PT+ W    +     +   +     +     S L I     
Sbjct: 16  TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS---SELTIRNVDK 72

Query: 276 ADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
            D   Y C   N A        A ++++V  K
Sbjct: 73  NDEAEYVCIAENKAGEQD----ASIHLKVFAK 100

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.7 bits (115), Expect = 3e-08
 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 9/96 (9%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
               V EG+     C V+ S PP V W   +    +S               +  L I+ 
Sbjct: 9   YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKY-----MKRYNGNDYGLTINR 63

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
               D+G Y     N            V++ V   S
Sbjct: 64  VKGDDKGEYTVRAKNSYGTKE----EIVFLNVTRHS 95

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 8e-08
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG 262
           ++ KP      ++TV EGE  R  C   G P PTV W         S      +   +  
Sbjct: 2   ILTKP-----RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 56

Query: 263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
                 +I     +D GNY     N   +      A   + ++
Sbjct: 57  F-----EISSVQASDEGNYSVVVENSEGKQE----AEFTLTIQ 90

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 10/93 (10%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
           E  T   GE++ LEC  V      V+W    +                K     +L I+ 
Sbjct: 8   EDTTAYCGERVELEC-EVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGK---KHILIIEG 63

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
           AT AD   Y        +       A + V +K
Sbjct: 64  ATKADAAEYSVMTTGGQS------SAKLSVDLK 90

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQY 181
              L+C V+         + W+K  + I    +   R+     K  + I   T  DA +Y
Sbjct: 17  RVELECEVSEDDA----NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEY 72

Query: 182 SCRLIDPKST 191
           S      +S+
Sbjct: 73  SVMTTGGQSS 82

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 32/115 (27%)

Query: 203 VIMKPTAKLVETLTVIEGEKLRLECLVVGSPPPT-------------------------- 236
           + +    ++ +T+ V+ G KLRL+  + G P PT                          
Sbjct: 7   IHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTG 66

Query: 237 --VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA 289
              EW         ++GR+++    +     S+  ++ A   D G Y     N  
Sbjct: 67  DSDEWVFDKKLLCETEGRVRVETTKD----RSIFTVEGAEKEDEGVYTVTVKNPV 117

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 5/83 (6%)

Query: 208 TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSV 267
             KL     V +G K+RL    +      V+W         S  +       E   A   
Sbjct: 9   QKKLEPAYQVSKGHKIRLTV-ELADHDAEVKWLKNGQEIQMSGSKY----IFESIGAKRT 63

Query: 268 LQIDEATMADRGNYYCHGNNVAT 290
           L I + ++AD   Y C       
Sbjct: 64  LTISQCSLADDAAYQCVVGGEKC 86

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 205 MKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263
           +KP   K +  + V+EG   R +C V G P P V W   ++    S+             
Sbjct: 7   VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQ----IDYDEE 62

Query: 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
            N  L I E    D   Y C   N     +        + V+
Sbjct: 63  GNCSLTISEVCGDDDAKYTCKAVNSLGEAT----CTAELLVE 100

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 216 TVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT---ANSVLQID 271
           +V  G +  L C    GSPP    W     +   +  +   +      T    +  L  D
Sbjct: 13  SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFD 72

Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVR 303
             T  D G YYC   N      +   A +   
Sbjct: 73  PVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 104

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 5/92 (5%)

Query: 216 TVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT---ANSVLQIDE 272
           +   G +  L C      PP+      +     +  +   +              L  D 
Sbjct: 13  SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 72

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
            + +D G Y C   N     +      V +  
Sbjct: 73  LSASDTGEYSCEARNGY--GTPMTSNAVRMEA 102

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.0 bits (100), Expect = 3e-06
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 3/79 (3%)

Query: 211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
           + + +    G+   + C+   +P     +         +        +   G     L  
Sbjct: 9   VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG---KRLLF 65

Query: 271 DEATMADRGNYYCHGNNVA 289
                 D G Y C  +N  
Sbjct: 66  KTTLPEDEGVYTCEVDNGV 84

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.5 bits (99), Expect = 3e-06
 Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 14/101 (13%)

Query: 206 KPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTA 264
           +P    ++       G  LR  C+  G P P V W                +       +
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL---------ASQNRIEVS 51

Query: 265 NSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
              L+  +  + D G Y C   N          A   + V+
Sbjct: 52  GGELRFSKLVLEDSGMYQCVAENKHGTVY----ASAELTVQ 88

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 4e-06
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 213 ETLTVIEGEKLRLECL---VVGSPPPTVEWRIGND--TYFRSQGRIKLSEHPEKGTANSV 267
            ++ +    ++   C+   V G P P++ W                 L     +   +  
Sbjct: 5   ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64

Query: 268 LQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF 309
           L++++ T  + GNY     N   + S    A +        F
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQAS----ASIMAAFMDNPF 102

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-06
 Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 9/80 (11%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
             LT + G+ + L C  V      TV W +          R               L + 
Sbjct: 14  GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM--------GRRLLLR 65

Query: 272 EATMADRGNYYCHGNNVATR 291
              + D GNY C+       
Sbjct: 66  SVQLHDSGNYSCYRAGRPAG 85

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 4/98 (4%)

Query: 210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQ 269
            +    +        +   V G+P P ++W         S+              +  LQ
Sbjct: 6   TITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQ 65

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
           +D  T  + G+Y     N   ++       +     G 
Sbjct: 66  LDNPTHMNNGDYTLIAKNEYGKDE----KQISAHFMGW 99

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 210 KLVETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
           K     +++ G+   LEC V      P V W   N T        + S   EK  +  +L
Sbjct: 8   KRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFIL 67

Query: 269 QIDEATMADRGNYYCHGNNVA 289
             +     D G+Y C  N  +
Sbjct: 68  HFEPVLPNDNGSYRCSANFQS 88

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 215 LTVIEGEKLRLECL---VVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
           +++ E E     C+   V G+PPPT+ W         S+          + +    L  +
Sbjct: 9   VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS-EGCLLFN 67

Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
           + T  + GNY     N     +      +      +
Sbjct: 68  KPTHYNNGNYTLIAKNPLGTAN----QTINGHFLKE 99

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 1e-05
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 213 ETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQID 271
            + +V  G  +   C     SP  T+ W   ++    S+              N +L I 
Sbjct: 10  RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF----------NGILTIR 59

Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
               +D G Y C G+N+   +         + V+
Sbjct: 60  NVQPSDAGTYVCTGSNMFAMDQ----GTATLHVQ 89

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 7/84 (8%)

Query: 213 ETLTVIEGEKLRLECLVVGSP---PPTVEWRIGNDTYFRSQGR----IKLSEHPEKGTAN 265
           +   V  G  +     V G+    PP V+W  G      S+      +  S         
Sbjct: 12  QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL 71

Query: 266 SVLQIDEATMADRGNYYCHGNNVA 289
             L I +A  A  G Y C  +   
Sbjct: 72  FELHITDAQPAFTGGYRCEVSTKD 95

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 205 MKPT-AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263
           +KP        + +  G    LE   +G+P PT  W +G+     +   +  ++      
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSS---- 56

Query: 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
             + +    A  AD GNY     N    +     A   V V+
Sbjct: 57  -TTSIFFPSAKRADSGNYKLKVKNELGEDE----AIFEVIVQ 93

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 10/94 (10%)

Query: 206 KP--TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263
           +P   +   ET+ V  G +++L C V G       W+            +    +  +  
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 264 -------ANSVLQIDEATMADRG-NYYCHGNNVA 289
                    +VL I E         + C   N  
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTH 94

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 3/89 (3%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           + V  G+    +C  +G         +       +  +        +    +   +   T
Sbjct: 11  VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF--IASFNVVNTT 68

Query: 275 MADRGNYYCHGNNVATRNSQPNEAFVYVR 303
             D G Y C            N A + V+
Sbjct: 69  KRDAGKYRCMIRTEGGVGIS-NYAELVVK 96

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-05
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTAN--SVLQI 270
            +  + EGE   L C     PP T                          ++   S L I
Sbjct: 10  SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHI 69

Query: 271 DEATMADR-GNYYCHGNNVATRNSQPNEAFVYVRVK 305
           +   M    G Y C+G +    +     A + +RV+
Sbjct: 70  ENLNMEADPGQYRCNGTSSKGSDQ----AIITLRVR 101

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 6e-05
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 10/88 (11%)

Query: 204 IMKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGT 263
           + KP    +  + V  GE    E   +  P    +W++       S           +  
Sbjct: 4   VEKP----LYGVEVFVGETAHFEI-ELSEPDVHGQWKLKGQPLTASPDC-----EIIEDG 53

Query: 264 ANSVLQIDEATMADRGNYYCHGNNVATR 291
              +L +    +   G       N  + 
Sbjct: 54  KKHILILHNCQLGMTGEVSFQAANAKSA 81

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 7e-05
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIG---NDTYFRSQGRIKLSEHPEKGTANSVLQ 269
             + V E E ++L C   G   P VEW+              +I          ++S + 
Sbjct: 9   SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGIT 68

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
               T  D G Y C  +    +N    E  +++ V
Sbjct: 69  FSSVTRKDNGEYTCMVSEEGGQNYG--EVSIHLTV 101

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 16/94 (17%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSITEA--------------TELSGRLTQSKD--SIT 169
            L C   +       ++V +  ++                   ++  GR +   D  ++ 
Sbjct: 13  DLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLR 72

Query: 170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV 203
           +    + D G Y C +   K T    + Q + ++
Sbjct: 73  LHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSEL 106

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 14/95 (14%), Positives = 22/95 (23%), Gaps = 15/95 (15%)

Query: 213 ETLTVIEGEKLRLECLVVGSPP---PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQ 269
                  G++L L C V G  P    TV    G     R               A     
Sbjct: 12  LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKRE--------PAVGEPAEVTTT 63

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
           +          + C        + +P    ++   
Sbjct: 64  VLVRRDHHGAQFSC----RTELDLRPQGLELFENT 94

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIR 171
           + P           TL+C V    P     +V  +G K +            ++ + T+ 
Sbjct: 9   LAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVL 65

Query: 172 KTTVDDAGQYSCR 184
                   Q+SCR
Sbjct: 66  VRRDHHGAQFSCR 78

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADR 278
             EK+ L C    +PP T  W++                         ++  +     D 
Sbjct: 21  AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA------GDLVISNPVKAKDA 74

Query: 279 GNYYCHGNNVA 289
           G+Y C   N  
Sbjct: 75  GSYQCVATNAR 85

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 10/95 (10%)

Query: 213 ETLTVIEGEKLRLECLVVGS---PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQ 269
           +   V  G+   +EC V         T+    GN+T             P    A +   
Sbjct: 10  QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGK---AAPAPQEATATFN 66

Query: 270 IDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
                     N+ C    +A  +       ++ + 
Sbjct: 67  STADREDGHRNFSC----LAVLDLMSRGGNIFHKH 97

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE--LSGRLTQSKDSITIRKTTVDDAGQY 181
            FT++C V +  P D   +  ++GN+++   T    +    ++  +        D    +
Sbjct: 19  SFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNF 78

Query: 182 SCR 184
           SC 
Sbjct: 79  SCL 81

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 22/111 (19%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW------RIGNDTYFRSQGRIKLSEHPEK----- 261
             +  + G++  L C +      T               +    G+ + +E   +     
Sbjct: 10  HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRT 69

Query: 262 -------GTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK 305
                  G     L+I     +D G Y C        +S   EA V ++V+
Sbjct: 70  ELLKESIGEGKVALRIQNVRFSDEGGYTCF----FRDHSYQEEAAVELKVE 116

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 10/93 (10%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
             +   E     LEC++ G+          +   +  Q       +         L    
Sbjct: 10  AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-----NAALRKDEGSLVFLR 64

Query: 273 ATMADRGNYYCHGNNVA-TRNSQPNEAFVYVRV 304
              +D G+Y C     A   +S+     +  R 
Sbjct: 65  PQASDEGHYQCFAETPAGVASSRV----ISFRK 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 14/96 (14%), Positives = 23/96 (23%), Gaps = 10/96 (10%)

Query: 214 TLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDE 272
            L     E     C +       T+ W   +     S       +          L    
Sbjct: 11  ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVST-----EQASRIHQHKEKLWFVP 65

Query: 273 ATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
           A + D G+YYC   N +          +  +     
Sbjct: 66  AKVEDSGHYYCVVRNSSYC----LRIKISAKFVENE 97

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWR 240
                  T  E  +    C   G+P P ++  
Sbjct: 8   RDCPGNWTWPENSQQTPMCQAWGNPLPELKCL 39

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 15/105 (14%)

Query: 213 ETLTVIEGEKLRLECLVVGSPP---PTVEWR------IGNDTYFRSQGRIKLSEHPEKGT 263
           +  TV  GE +     V        PT++W       + +      Q +     H    T
Sbjct: 8   QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 67

Query: 264 ANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS 308
               +QI +A     GNY C        +S        + V   +
Sbjct: 68  --FEMQIIKAKDNFAGNYRCEVTYKDKFDS----CSFDLEVHEST 106

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 14/80 (17%)

Query: 124 PFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSC 183
              L C++            W KG   + E       L   K    +     D  G+YSC
Sbjct: 14  KILLTCSLNDSATEVTGHR-WLKGGVVLKED-----ALPGQKTEFKVDSD--DQWGEYSC 65

Query: 184 RLIDPKSTNTTPLAQADFDV 203
                      P+  A+  +
Sbjct: 66  VF------LPEPMGTANIQL 79

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 9e-04
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 17/95 (17%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
           L   EGE + L C      P        N    +          P            +A 
Sbjct: 10  LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIP------------QAN 57

Query: 275 MADRGNYYCHG-NNVATRNSQPNEAFVYVRVKGKS 308
            +  G+Y+C G       +S+P    V + V+  +
Sbjct: 58  HSHSGDYHCTGNIGYTLYSSKP----VTITVQAPA 88

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 9e-04
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEW--RIGNDTYFRSQGRIKLSEHPEKGTANSVLQI 270
           +T   + GEK +++C +  +PPP         N     + GR  +     +    S L I
Sbjct: 14  QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI 73

Query: 271 DEATMA-DRGNYYCHGNNVATRNSQPNEAFVYVRVKGK 307
                A  +  Y C   N    ++      + ++ +G 
Sbjct: 74  SNIVRADFQTIYNCTAWNSFGSDT----EIIRLKEQGS 107

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 216 TVIEGEKLRLECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEAT 274
            +  G+ + ++C V    P   +E  +    +             +     S+       
Sbjct: 12  PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV 71

Query: 275 MADRG-NYYCHG-NNVATRNSQPNE 297
           + D G    C    ++   +S P  
Sbjct: 72  IEDIGKVLVCRAKLHIDEMDSVPTV 96

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 126 TLKCNVTSPPPGDDYQIVWYKGNKSI------TEATELSGRLTQSKD-SITIRKTTVDDA 178
            L          D  ++ W +G+  +       +    SG      +  + I+  T DD+
Sbjct: 14  NLNIP-NFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDS 72

Query: 179 GQYSCRLIDPKSTNTT 194
           G Y+  +     T   
Sbjct: 73  GTYNVTVYSTNGTRIL 88

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 5/93 (5%)

Query: 215 LTVIEGEKLRLECLVVGSPPPTVEWRIGND---TYFRSQGRIKLSEHPEKGTANSVLQID 271
           + + E   ++L C   G   P VEW+              +I  S         + +   
Sbjct: 14  VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73

Query: 272 EATMADRGNYYCHGNNVATRNSQPNEAFVYVRV 304
             T  D G Y C  +     +    E  V + V
Sbjct: 74  SVTREDTGTYTCMVSEEGGNSYG--EVKVKLIV 104

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 19/95 (20%)

Query: 215 LTVIEGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEA 273
             V+EG+ L L C          V +    +                    N  + I  A
Sbjct: 10  EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE-------------NHNISITNA 56

Query: 274 TMADRGNYYCHG-NNVATRNSQPNEAFVYVRVKGK 307
           T+ D G YYC G        S+P    + + V   
Sbjct: 57  TVEDSGTYYCTGKVWQLDYESEP----LNITVIKA 87

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 11/83 (13%), Positives = 20/83 (24%), Gaps = 6/83 (7%)

Query: 213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY-----FRSQGRIKLSEHPEKGTANSV 267
           + +  +    +         P   V W+   D          +            T +  
Sbjct: 3   QQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 268 LQIDEATMADRGNYYCHGNNVAT 290
           L I   T +D   Y     N+  
Sbjct: 62  LTIYNLTSSDEDEYEMESPNITD 84

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 11/74 (14%), Positives = 16/74 (21%), Gaps = 6/74 (8%)

Query: 126 TLKCNVTSPPP------GDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAG 179
           T       P          D              + +    L     S+TI   T  D  
Sbjct: 14  TFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED 73

Query: 180 QYSCRLIDPKSTNT 193
           +Y     +   T  
Sbjct: 74  EYEMESPNITDTMK 87

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 210 KLVETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVL 268
           +  + + + EG  +   C      P  +  W +     F      +             L
Sbjct: 9   EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT-----TGNL 63

Query: 269 QIDEATMADRGNYYCH-GNNVATRNSQPNEAFVYVRV 304
            I +   +D GNY C   +++          F  + +
Sbjct: 64  YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSL 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.71
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.7
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.68
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.68
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.67
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.66
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.66
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.65
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.65
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.65
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.63
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.63
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.62
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.62
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.62
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.6
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.59
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.59
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.59
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.58
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.58
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.57
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.57
d2avga1	110	Cardiac myosin binding protein C, different domain	99.55
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.55
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.55
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.55
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.55
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.55
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.54
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.54
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.54
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.54
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.53
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.53
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.53
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.53
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.51
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.5
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.5
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.49
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.49
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.49
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.48
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.48
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.47
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.46
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.46
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.44
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.44
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.44
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.44
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.43
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.42
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.42
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.41
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.41
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.41
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.41
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.4
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.4
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.39
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.39
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.39
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.38
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.38
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.38
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.38
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.38
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.38
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.37
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.36
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.36
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.36
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.32
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.32
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.32
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.31
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.3
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.3
d2avga1	110	Cardiac myosin binding protein C, different domain	99.3
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.3
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.29
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.29
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.28
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.28
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.27
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.26
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.26
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.25
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.24
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.24
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.23
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.23
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.23
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.23
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.22
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.21
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.2
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.2
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.17
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.16
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.14
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.14
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.13
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.12
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.12
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.11
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.09
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.03
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.02
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.02
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.01
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.97
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.95
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.95
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.91
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.87
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.86
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.82
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.81
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.78
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.74
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.68
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.68
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.66
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.65
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.63
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.6
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.6
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.59
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.58
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.58
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.57
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.54
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.54
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.53
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.52
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.52
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.52
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.51
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.51
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.51
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.49
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.48
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.48
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.47
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.47
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.46
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.46
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.46
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.46
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.46
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.45
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.45
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.44
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.44
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.44
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.44
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.43
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.42
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.41
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.41
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.41
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.41
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.4
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.4
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.4
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.4
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.4
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.39
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.39
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.38
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.38
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.38
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.37
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.37
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.37
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.35
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.35
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.35
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.35
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.35
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.35
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.34
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.34
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.34
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.34
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.33
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.33
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.33
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.33
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.31
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.31
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.31
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.31
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.31
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.31
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.31
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.31
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.31
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.3
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.3
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.3
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.3
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.3
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.3
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.3
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.29
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.29
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.28
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.27
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.27
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.27
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.26
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.26
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.26
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.26
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.26
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.26
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.25
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.25
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.25
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.24
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.24
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.24
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.23
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.23
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.23
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.22
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.22
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.22
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.21
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.21
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.2
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.2
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.2
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.2
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.19
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.19
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.18
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.18
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.18
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.18
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.18
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.18
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.17
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.17
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.17
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.17
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.17
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.17
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.17
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.17
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.16
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.16
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.16
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.16
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.15
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.15
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.15
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.14
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.14
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.13
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.13
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.13
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.12
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.12
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.11
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.11
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.11
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.11
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.11
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.1
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.1
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.1
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.1
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.09
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.09
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.08
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.08
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.08
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.08
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.08
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.08
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.07
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.07
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.07
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.07
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.06
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.06
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.06
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.06
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.05
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.05
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.05
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.05
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.05
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.05
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.05
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.04
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.04
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.04
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.04
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.04
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.03
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.03
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.03
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.03
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.03
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.03
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.03
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.03
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.03
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.02
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.02
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.02
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.02
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.01
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.01
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.01
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	98.0
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.0
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.0
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.0
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.99
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.99
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.99
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.99
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.99
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.98
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.98
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.98
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.98
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.98
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.97
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.97
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.97
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.97
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.97
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.97
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.96
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.96
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.96
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.96
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.96
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.96
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.96
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.96
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.95
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.94
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.94
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.94
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.94
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.94
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.93
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.93
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.93
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.93
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.93
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.92
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.92
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.92
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.92
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.91
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.91
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.91
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.91
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.91
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.91
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.91
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.9
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.9
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.9
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.9
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.9
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.9
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.9
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.9
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.89
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.88
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.88
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.88
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.88
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.88
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.88
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.87
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.87
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.87
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.87
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.87
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.85
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.85
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.85
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.85
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.84
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.84
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.83
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.83
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.83
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.83
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.83
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.83
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.83
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.83
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.83
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.83
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.83
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.82
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.82
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.81
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.81
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.8
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.8
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.8
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.8
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.8
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.79
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.79
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.79
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.79
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.79
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.78
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.77
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.76
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.76
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.74
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.73
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.73
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.73
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.73
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.73
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.72
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.72
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.71
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.7
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.7
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.69
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.69
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.69
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.68
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.68
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.67
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.67
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.67
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.66
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.66
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.65
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.65
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.64
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.63
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.62
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.61
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.61
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.6
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.59
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.57
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.57
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.57
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.56
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.54
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.54

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.71  E-value=3.5e-17  Score=106.46  Aligned_cols=84  Identities=24%  Similarity=0.421  Sum_probs=71.6

Q ss_pred             eeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        209 AKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       209 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      +..+.+..+..|+++.|.|.+.|.|.|.+.|++||..+... .++.+.        ...|.|.++..+|.|.|+|.|.|.
T Consensus         5 ~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~-~~~~~~--------~~~L~i~~v~~~D~G~Y~C~a~N~   75 (89)
T d1cs6a4           5 LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ-NRIEVS--------GGELRFSKLVLEDSGMYQCVAENK   75 (89)
T ss_dssp             EECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC-SSEEEE--------TTEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccc-ceeeee--------eeeEEEEeecccCCEEEEEEEEeC
Confidence            44556778899999999999999999999999999988654 455554        568999999999999999999999


Q ss_pred             ccCCCCCceeEEEEEEc
Q psy15235        289 ATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       289 ~g~~~~~~~~~~~l~v~  305 (323)
                      .|.    ....+.|.|+
T Consensus        76 ~G~----~~~~~~l~V~   88 (89)
T d1cs6a4          76 HGT----VYASAELTVQ   88 (89)
T ss_dssp             TEE----EEEEEEEEEE
T ss_pred             CCE----EEEEEEEEEE
Confidence            976    7778888775

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.70  E-value=7.5e-17  Score=107.17  Aligned_cols=92  Identities=23%  Similarity=0.281  Sum_probs=74.2

Q ss_pred             eeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        208 TAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       208 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      .+..+.+..+.+|+.+.|.|.+.|+|.|.+.|++|+..+..+........  .+  ....|.|.++..+|.|.|+|.|.|
T Consensus         7 f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           7 IFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP--ED--NVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE--ET--TEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEec--cc--eEEEEEeccCccccCEEEEEEEEE
Confidence            33345567889999999999999999999999999999876554443331  11  256899999999999999999999


Q ss_pred             cccCCCCCceeEEEEEEcce
Q psy15235        288 VATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       288 ~~g~~~~~~~~~~~l~v~~~  307 (323)
                      ..|.    ....+.|.|+++
T Consensus        83 ~~G~----~~~~~~L~V~~k   98 (98)
T d1g1ca_          83 IAGE----TSSHAFLLVQAK   98 (98)
T ss_dssp             TTEE----EEEEEEEEEECC
T ss_pred             CCcE----EEEEEEEEEEEC
Confidence            9976    788888888753

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.3e-16  Score=106.54  Aligned_cols=93  Identities=25%  Similarity=0.199  Sum_probs=76.4

Q ss_pred             eeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        210 KLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       210 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ..+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+... .++.+....    ...+|.|.++..+|+|.|+|.|.|..
T Consensus         5 ~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~-~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~   79 (101)
T d2cqva1           5 QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-EHMKVENSE----NGSKLTILAARQEHCGCYTLLVENKL   79 (101)
T ss_dssp             CCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS-SSEEEEECS----SEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred             eeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccC-CcEEEEEec----ceeEEEEeeCCcccCEEEEEEEEECC
Confidence            3455677899999999999999999999999999988644 444443211    35789999999999999999999999


Q ss_pred             cCCCCCceeEEEEEEcceecCc
Q psy15235        290 TRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      |.    ....+.|.|.+.|.+.
T Consensus        80 G~----~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          80 GS----RQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             CE----EECCEEEEEECSCSCC
T ss_pred             CE----EEEEEEEEEEecCCCc
Confidence            66    8888899998887653

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.68  E-value=8.5e-17  Score=106.68  Aligned_cols=90  Identities=23%  Similarity=0.325  Sum_probs=73.3

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..+ .++.+.  ..+  ....|.|.++..+|+|.|+|.|.|..|
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~-~~~~~~--~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G   81 (97)
T d1koaa1           7 KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-VKYMKR--YNG--NDYGLTINRVKGDDKGEYTVRAKNSYG   81 (97)
T ss_dssp             CCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSB-TTBBCC--CST--TEEEEEESCCCSGGGSCEEEEEEETTE
T ss_pred             eCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeecccee-eEEEEE--ecC--CeeEEEeCCCceecCEEEEEEEEECCC
Confidence            455677899999999999999999999999999998654 344333  111  467899999999999999999999996


Q ss_pred             CCCCCceeEEEEEEcceec
Q psy15235        291 RNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~~~~  309 (323)
                      .    ....+.|.|.+.+.
T Consensus        82 ~----~~~~~~l~V~~~~~   96 (97)
T d1koaa1          82 T----KEEIVFLNVTRHSE   96 (97)
T ss_dssp             E----EEEEECCEEECSCC
T ss_pred             E----EEEEEEEEEeecCC
Confidence            6    77888888876554

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.68  E-value=1.7e-16  Score=103.21  Aligned_cols=78  Identities=27%  Similarity=0.479  Sum_probs=66.2

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNS  293 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~  293 (323)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+.  ..++.+.        ...|.|.++..+|+|.|+|.|.|..|.  
T Consensus        12 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~--~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~G~--   79 (89)
T d1biha4          12 VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS--GGRATVT--------DSGLVIKGVKNGDKGYYGCRATNEHGD--   79 (89)
T ss_dssp             EEEECTTSCEEEECEEEEESCCCCEEEETTEECC--SSSEEEE--------TTEEEESSCCSTTCEEEEEEEEETTEE--
T ss_pred             CEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCc--cccEEEe--------eeeEEECCCChhhCEEEEEEEEECCCE--
Confidence            3457889999999999999999999999999885  3445544        456999999999999999999999966  


Q ss_pred             CCceeEEEEEEc
Q psy15235        294 QPNEAFVYVRVK  305 (323)
Q Consensus       294 ~~~~~~~~l~v~  305 (323)
                        ....+.|.|.
T Consensus        80 --~~~~~~l~V~   89 (89)
T d1biha4          80 --KYFETLVQVN   89 (89)
T ss_dssp             --EEEEEEEEEC
T ss_pred             --EEEEEEEEEC
Confidence              7778887763

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.8e-17  Score=103.32  Aligned_cols=78  Identities=15%  Similarity=0.236  Sum_probs=66.4

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .++..+.+|++++|.|.+.|.|+|.+.|++++..+..               ....|+|.++..+|+|.|+|.|.|..|.
T Consensus         6 ~~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~---------------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~   70 (84)
T d2nxyb2           6 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------------GGKTLSVSQLELQDSGTWTCTVLQNQKK   70 (84)
T ss_dssp             SCSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE---------------ESSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCeEEECCCeEEEEEEeEcCCchheEEEeeccccee---------------eeeeeeeeecccccccEEEEEEEeCCCE
Confidence            3455688999999999999999999999998765542               2567999999999999999999999966


Q ss_pred             CCCCceeEEEEEEccee
Q psy15235        292 NSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       292 ~~~~~~~~~~l~v~~~~  308 (323)
                          ....+.|.|.+.|
T Consensus        71 ----~~~~~~v~V~~~~   83 (84)
T d2nxyb2          71 ----VEFKIDIVVLAFQ   83 (84)
T ss_dssp             ----EEEEEEECEECCC
T ss_pred             ----EEEEEEEEEEecC
Confidence                8888888887655

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.66  E-value=5.2e-16  Score=103.83  Aligned_cols=92  Identities=25%  Similarity=0.408  Sum_probs=73.2

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      +|.+. .+.+..+.+|+++.|.|.+.|.|.|.+.|++||..+... .++.+....   ....+|.|.++..+|.|.|+|.
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~-~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~   83 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYDE---EGNCSLTISEVCGDDDAKYTCK   83 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEECT---TCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccce-eeEeEEEec---CceeeeEecCCCHHhCEEEEEE
Confidence            34433 455677889999999999999999999999999998754 344433111   1357899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEc
Q psy15235        285 GNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      |.|..|.    ...++.|.|+
T Consensus        84 a~N~~G~----~~~~~~L~V~  100 (102)
T d1fhga_          84 AVNSLGE----ATCTAELLVE  100 (102)
T ss_dssp             EEETTEE----EEEEEEEEEE
T ss_pred             EEECCcE----EEEEEEEEEE
Confidence            9999976    7788888875

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=2.2e-16  Score=103.17  Aligned_cols=85  Identities=25%  Similarity=0.547  Sum_probs=67.4

Q ss_pred             cceee--eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        206 KPTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       206 ~p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      +|.+.  .+....+.+|+.+.|.|.+.|+|.|.+.|++++.....   .. ..       ....|.|.++..+|+|.|+|
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~---~~-~~-------~~~~L~I~~v~~~D~G~Y~C   72 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---KW-LS-------SEPLLHIQNVDFEDEGTYEC   72 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC---CC-SB-------SSSEEEECSCCGGGCEEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce---Ee-ee-------eeeEEEeCCCCccCCEEEEE
Confidence            44443  35577789999999999999999999999997754321   11 11       36789999999999999999


Q ss_pred             EEeecccCCCCCceeEEEEEEc
Q psy15235        284 HGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       284 ~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      .|.|..|.    ....+.|.|.
T Consensus        73 ~a~N~~G~----~~~~~~l~V~   90 (91)
T d1cs6a3          73 EAENIKGR----DTYQGRIIIH   90 (91)
T ss_dssp             EEEETTEE----EEEEEEEEEE
T ss_pred             EEEECCCE----EEEEEEEEEE
Confidence            99999976    7778888775

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.3e-16  Score=104.44  Aligned_cols=92  Identities=25%  Similarity=0.381  Sum_probs=70.0

Q ss_pred             cceeeeec---eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCe---eeeecCCCCCCcceeEEEeecCcCCCe
Q psy15235        206 KPTAKLVE---TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR---IKLSEHPEKGTANSVLQIDEATMADRG  279 (323)
Q Consensus       206 ~p~~~~~~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~v~~~d~G  279 (323)
                      ||.+....   +..+..|+++.|.|.+.|+|.|.+.|+++|..+......   ....      ...++|.|.+++.+|+|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~------~~~~~L~I~~v~~~D~G   76 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS------DDSSELTIRNVDKNDEA   76 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEEC------TTSCEEEECSCCGGGCE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEee------cCceEEEeCCCCcccCE
Confidence            55554222   345567999999999999999999999999987643221   1111      13578999999999999


Q ss_pred             EEEEEEeecccCCCCCceeEEEEEEcce
Q psy15235        280 NYYCHGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       280 ~y~C~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      .|+|.|.|..|.    ....+.|.|..+
T Consensus        77 ~Y~C~a~N~~G~----~~~~~~l~V~~K  100 (100)
T d1qz1a3          77 EYVCIAENKAGE----QDASIHLKVFAK  100 (100)
T ss_dssp             EEEEEEEETTEE----EEEEEEEEEECC
T ss_pred             EEEEEEEECCCE----EEEEEEEEEEEC
Confidence            999999999966    778888888653

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.65  E-value=3.5e-16  Score=102.78  Aligned_cols=86  Identities=23%  Similarity=0.372  Sum_probs=69.8

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .+.+..+.+|+++.|.|.+.|+|.|.+.|++++..+..+. ++.....    .....|.|.++..+|+|.|+|.|.|..|
T Consensus         8 ~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~-~~~~~~~----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G   82 (93)
T d1wiua_           8 ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP-ELLVDAK----SSTTSIFFPSAKRADSGNYKLKVKNELG   82 (93)
T ss_dssp             CCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCST-TSEEEEE----TTEEEEECTTBCGGGCEEEEEEEEETTE
T ss_pred             CCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeee-eeeeccc----ccceeeccccccccccEEEEEEEEECCC
Confidence            4456778999999999999999999999999998876543 3332211    1357899999999999999999999996


Q ss_pred             CCCCCceeEEEEEEc
Q psy15235        291 RNSQPNEAFVYVRVK  305 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~  305 (323)
                      .    .+..+.|.|+
T Consensus        83 ~----~~~~~~l~V~   93 (93)
T d1wiua_          83 E----DEAIFEVIVQ   93 (93)
T ss_dssp             E----EEEEEEEEEC
T ss_pred             E----EEEEEEEEEC
Confidence            6    7888888774

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.9e-16  Score=104.40  Aligned_cols=88  Identities=17%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             eeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCce
Q psy15235        218 IEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNE  297 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~  297 (323)
                      ..++...|.|.+.|+|.|.+.|++||..+..+................+.|.|.+++.+|.|.|+|.|.|..|.    .+
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~----~~   89 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK----DE   89 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE----EE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCE----EE
Confidence            35778889999999999999999999998754332211111112224578999999999999999999999966    89


Q ss_pred             eEEEEEEcceec
Q psy15235        298 AFVYVRVKGKSF  309 (323)
Q Consensus       298 ~~~~l~v~~~~~  309 (323)
                      ..+.|.|.++|.
T Consensus        90 ~~~~v~V~~~P~  101 (103)
T d1wwbx_          90 KQISAHFMGWPG  101 (103)
T ss_dssp             EEEEECCSCCCC
T ss_pred             EEEEEEEEeCCC
Confidence            999999988875

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.7e-16  Score=101.04  Aligned_cols=89  Identities=20%  Similarity=0.353  Sum_probs=68.7

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      |.+..+.+|+++.|.|.+.|.|.|.+.|++++..+..........   ........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~---~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   79 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPV---SEQHWIGFLSLKSVERSDAGRYWCQVEDGGET   79 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEE---ETTEEEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeee---cccCceeeEEECCCCcccCEEEEEEEEECCCC
Confidence            456778899999999999999999999999999886543322221   11113568999999999999999999999965


Q ss_pred             CCCCceeEEEEEEcc
Q psy15235        292 NSQPNEAFVYVRVKG  306 (323)
Q Consensus       292 ~~~~~~~~~~l~v~~  306 (323)
                         ..+..++|.|.+
T Consensus        80 ---~~S~~~~l~V~G   91 (91)
T d1rhfa1          80 ---EISQPVWLTVEG   91 (91)
T ss_dssp             ---EECCCEEEEEEC
T ss_pred             ---EEEEEEEEEEEC
Confidence               134567777764

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.63  E-value=2.1e-16  Score=103.37  Aligned_cols=86  Identities=28%  Similarity=0.426  Sum_probs=69.6

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .|.+..+.+|+++.|.|.+.|+|.|.+.|+++|..+.... ++.+....    ....|.|.++..+|+|.|+|.|.|..|
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~-~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA-RHQVTTTK----YKSTFEISSVQASDEGNYSVVVENSEG   79 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSS-SCEEEECS----SEEEEECSSCCSCCCEEEEEECBCSSC
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeeccccccc-ceeeeeec----ceeEEeecCCCHHHCEEEEEEEEECCC
Confidence            3456778899999999999999999999999998886443 33332111    468899999999999999999999996


Q ss_pred             CCCCCceeEEEEEEc
Q psy15235        291 RNSQPNEAFVYVRVK  305 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~  305 (323)
                      .    ....+.|.|+
T Consensus        80 ~----~~~~~~l~V~   90 (91)
T d1tnna_          80 K----QEAEFTLTIQ   90 (91)
T ss_dssp             B----CCEEEEEECC
T ss_pred             E----EEEEEEEEEE
Confidence            6    7778888775

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-15  Score=99.12  Aligned_cols=79  Identities=18%  Similarity=0.362  Sum_probs=64.2

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ  294 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~  294 (323)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+..... ....       ..++|.|.++..+|+|.|+|.|.|..|.   
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~N~~g~---   79 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKV-TNEG-------TTSTLTMNPVSFGNEHSYLCTATCESRK---   79 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEE-EEET-------TEEEEEESSCCGGGCSEEEEEEEETTEE---
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeeee-eeec-------CCcEEEEecccccccceEEEEEEeCCCE---
Confidence            4456899999999999999999999998876543221 1111       4688999999999999999999999966   


Q ss_pred             CceeEEEEEEc
Q psy15235        295 PNEAFVYVRVK  305 (323)
Q Consensus       295 ~~~~~~~l~v~  305 (323)
                       .+..+.|.|.
T Consensus        80 -~~~~~~v~V~   89 (90)
T d1vcaa2          80 -LEKGIQVEIY   89 (90)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -EEEEEEEEEE
Confidence             7888888774

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.62  E-value=4.8e-16  Score=102.87  Aligned_cols=82  Identities=18%  Similarity=0.295  Sum_probs=65.9

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCC
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQ  294 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~  294 (323)
                      ..+..|+++.|.|.+.|+|.|.+.|++||..+...........    .....+|.|.++..+|+|.|+|.|.|..|.   
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~---   87 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGS---   87 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEE----EGGGTEEEECSCCGGGCEEEEEEEEETTEE---
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEE----cCCcEEEEECCCCcccCEEEEEEEEECCCE---
Confidence            4567899999999999999999999999999865432211110    013578999999999999999999999966   


Q ss_pred             CceeEEEEEE
Q psy15235        295 PNEAFVYVRV  304 (323)
Q Consensus       295 ~~~~~~~l~v  304 (323)
                       ....+.|.|
T Consensus        88 -~~~~~~l~V   96 (97)
T d3dara1          88 -INHTYHLDV   96 (97)
T ss_dssp             -EEEEEEEEE
T ss_pred             -EEEEEEEEE
Confidence             778888876

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.1e-15  Score=102.68  Aligned_cols=88  Identities=19%  Similarity=0.229  Sum_probs=68.7

Q ss_pred             eCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCCCCCcee
Q psy15235        219 EGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEA  298 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~  298 (323)
                      .+....|.|.+.|+|.|.+.|++||..+....... ...........+.|.|.+++.+|+|.|+|.|.|..|.    .+.
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~----~~~   90 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIH-VEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT----ANQ   90 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEE-EEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEE----EEE
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCccee-eeEEeecccceEEEEEeecccccceEEEEEEEcCCCE----EEE
Confidence            34556788899999999999999999887553322 2111222334678999999999999999999999966    889


Q ss_pred             EEEEEEcceecCc
Q psy15235        299 FVYVRVKGKSFGY  311 (323)
Q Consensus       299 ~~~l~v~~~~~~~  311 (323)
                      .+.|.|.++|.+.
T Consensus        91 ~~~v~V~~~P~P~  103 (105)
T d1wwca_          91 TINGHFLKEPFPV  103 (105)
T ss_dssp             EEEECCSCCCCCS
T ss_pred             EEEEEEEeCCCCC
Confidence            9999998888664

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.6e-15  Score=97.74  Aligned_cols=80  Identities=23%  Similarity=0.378  Sum_probs=65.2

Q ss_pred             eceeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        212 VETLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      +....+.+|+++.|.|.+. +.|.+.+.|++++..+....  ...        ....|+|.+++.+|+|.|+|.|.|..|
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMD--------FNGILTIRNVQPSDAGTYVCTGSNMFA   78 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EEE--------ETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc--cEe--------eceEEEEecCCcccCEEEEEEEEECCC
Confidence            4456788999999999996 67888999999987765332  222        257899999999999999999999996


Q ss_pred             CCCCCceeEEEEEEc
Q psy15235        291 RNSQPNEAFVYVRVK  305 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~  305 (323)
                      .    ....+.|.|+
T Consensus        79 ~----~~~~~~l~V~   89 (89)
T d1gl4b_          79 M----DQGTATLHVQ   89 (89)
T ss_dssp             E----EEEEEEEEEC
T ss_pred             E----EEEEEEEEEC
Confidence            5    7788888774

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=1.8e-15  Score=98.90  Aligned_cols=83  Identities=29%  Similarity=0.454  Sum_probs=65.3

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC-eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG-RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ++...       ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus         7 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~n~~   79 (92)
T d1epfa2           7 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL-------SNNYLQIRGIKKTDEGTYRCEGRILA   79 (92)
T ss_dssp             CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC-------TTSCEEETTCCGGGCEEEEEEEEEGG
T ss_pred             cCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeee-------eeeeEEECCCCHHhCEEEEEEEEECc
Confidence            45567889999999999999999999999999998765433 23322       24579999999999999999999987


Q ss_pred             cCCCCCceeEEEEEE
Q psy15235        290 TRNSQPNEAFVYVRV  304 (323)
Q Consensus       290 g~~~~~~~~~~~l~v  304 (323)
                      |.    ......+.|
T Consensus        80 ~~----~~~~~~i~V   90 (92)
T d1epfa2          80 RG----EINFKDIQV   90 (92)
T ss_dssp             GT----EEEEEEEEE
T ss_pred             CC----EEEEEEEEE
Confidence            55    444444444

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.2e-15  Score=95.23  Aligned_cols=78  Identities=21%  Similarity=0.347  Sum_probs=60.3

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.+..+.+|+++.|.|.+.|+|.| ++.|++||..+...              ....++|.....+|+|.|+|.|.|..
T Consensus         7 ~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~--------------~~~~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           7 EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP--------------APSPSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             CCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS--------------EESSEEEEECCCSSCEEEEEEEEETT
T ss_pred             eCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC--------------CCcceEEecCCccccEEEEEEEEcCC
Confidence            4556778899999999999999988 89999999887532              13345666667789999999999999


Q ss_pred             cCCCCCceeEEEEEEc
Q psy15235        290 TRNSQPNEAFVYVRVK  305 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~  305 (323)
                      |.   ..+..++|.|+
T Consensus        73 G~---~~S~~~~v~Vk   85 (85)
T d1rhfa2          73 GL---ASSRTATVHLQ   85 (85)
T ss_dssp             EE---EECCCEEEEEC
T ss_pred             Cc---EEEEEEEEEEC
Confidence            75   23445666553

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.59  E-value=6.9e-15  Score=97.17  Aligned_cols=87  Identities=14%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +.+..+..|+++.|.|.+.|+|.+.+.|+++|..+...... .+.  .........|.|.+++.+|+|.|+|.|.|..|.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~-~~~--~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   86 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED-RIT--RHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK   86 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTS-SEE--SCSSSTTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeecccccee-eee--eeeecCCCEEEEEeccccccEEEEEEEEECCCc
Confidence            45677889999999999999999999999999988643221 121  112224578999999999999999999999975


Q ss_pred             CCCCceeEEEEEE
Q psy15235        292 NSQPNEAFVYVRV  304 (323)
Q Consensus       292 ~~~~~~~~~~l~v  304 (323)
                         .....+.|.|
T Consensus        87 ---~~s~s~~L~V   96 (97)
T d1biha3          87 ---PQKHSLKLTV   96 (97)
T ss_dssp             ---CEEEEEEEEE
T ss_pred             ---EEEEEEEEEE
Confidence               1344677765

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5e-16  Score=101.75  Aligned_cols=83  Identities=23%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCe-EEEEEEeecc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRG-NYYCHGNNVA  289 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~y~C~a~n~~  289 (323)
                      .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........       ......|.|.++..+|.| .|+|.|.|..
T Consensus         8 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~-------~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~   80 (92)
T d2ifga1           8 QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSG-------GLPSLGLTLANVTSDLNRKNVTCWAENDV   80 (92)
T ss_dssp             ECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCC-------CSSEEEEEEESCCSTTTTCCEEECCEETT
T ss_pred             eCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeee-------eccceeEEEccccccccceEEEEEEEcCC
Confidence            34466788999999999999999999999999877643222211       124688999999999999 6999999999


Q ss_pred             cCCCCCceeEEEEEE
Q psy15235        290 TRNSQPNEAFVYVRV  304 (323)
Q Consensus       290 g~~~~~~~~~~~l~v  304 (323)
                      |.    ...++.|.|
T Consensus        81 G~----~~~s~~l~V   91 (92)
T d2ifga1          81 GR----AEVSVQVNV   91 (92)
T ss_dssp             EE----CCEEECCCC
T ss_pred             CE----EEEEEEEEE
Confidence            76    666776655

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-15  Score=100.61  Aligned_cols=93  Identities=22%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCC-CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPP-PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+....+..|+++.|.|.+.|.|. |.+.|++++..+.....+........+......|.|.++..+|+|.|+|.|.|..
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   88 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS   88 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCC
Confidence            344567889999999999999984 8999999887654322221111102222235679999999999999999999999


Q ss_pred             cCCCCCceeEEEEEEcc
Q psy15235        290 TRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~~  306 (323)
                      |..   .+..+.|.|.+
T Consensus        89 G~~---~s~~~~l~V~e  102 (104)
T d2aw2a1          89 NLI---ESHSTTLYVTD  102 (104)
T ss_dssp             EEE---ECCCEEEEEEC
T ss_pred             CeE---EEEEEEEEEEE
Confidence            651   23456666653

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6e-16  Score=98.72  Aligned_cols=73  Identities=18%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +.+..+.+|+.+.|.|.+.|+|.|.+.|++++..+...                  +.+.+++.+|+|.|+|.|.|..|.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~------------------~~~~~v~~~d~G~Y~C~A~N~~G~   72 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI------------------GESVTVTRDLEGTYLCRARSTQGE   72 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT------------------TSCEECCGGGCEEEEEEEEETTEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee------------------eeeeccccCCCCEEEEEEEcCCCE
Confidence            45677889999999999999999999999998776422                  123467889999999999999966


Q ss_pred             CCCCceeEEEEEEcc
Q psy15235        292 NSQPNEAFVYVRVKG  306 (323)
Q Consensus       292 ~~~~~~~~~~l~v~~  306 (323)
                          .+..+.|.|..
T Consensus        73 ----~~~~~~l~V~~   83 (84)
T d2oz4a3          73 ----VTREVTVNVLS   83 (84)
T ss_dssp             ----EEEEEEEEEEC
T ss_pred             ----EEEEEEEEEEC
Confidence                77888888754

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.57  E-value=3.5e-15  Score=98.17  Aligned_cols=75  Identities=19%  Similarity=0.350  Sum_probs=61.9

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.+..+.+|+.+.|.|.+.|.|.| .+.|++||..+...........      ..++|.|.++..+|+|.|+|.|.|..
T Consensus         8 ~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           8 QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK------DEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECT------TSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecc------cceEEEEeccChhcCeEEEEEEEeCC
Confidence            4456778999999999999999876 6999999998865544443331      35679999999999999999999999


Q ss_pred             cC
Q psy15235        290 TR  291 (323)
Q Consensus       290 g~  291 (323)
                      |.
T Consensus        82 G~   83 (94)
T d1biha1          82 GV   83 (94)
T ss_dssp             EE
T ss_pred             CE
Confidence            76

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.8e-14  Score=96.66  Aligned_cols=95  Identities=20%  Similarity=0.250  Sum_probs=70.3

Q ss_pred             eeeeceeEEeeCCeEEEEEEEecCC---CCcEEEEECCeeeecc--CCeeeeecC--CCCCCcceeEEEeecCcCCCeEE
Q psy15235        209 AKLVETLTVIEGEKLRLECLVVGSP---PPTVEWRIGNDTYFRS--QGRIKLSEH--PEKGTANSVLQIDEATMADRGNY  281 (323)
Q Consensus       209 ~~~~~~~~~~~g~~~~l~C~~~g~p---~~~~~W~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~y  281 (323)
                      +..|.+..+..|++++|.|.+.|.|   .|.+.|++++......  ..++.....  .......++|.|.+++.+|+|.|
T Consensus         8 v~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   87 (110)
T d2avga1           8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGY   87 (110)
T ss_dssp             EECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEE
T ss_pred             EECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEE
Confidence            3455677889999999999999998   4689999987543221  122222110  11222457899999999999999


Q ss_pred             EEEEeecccCCCCCceeEEEEEEcce
Q psy15235        282 YCHGNNVATRNSQPNEAFVYVRVKGK  307 (323)
Q Consensus       282 ~C~a~n~~g~~~~~~~~~~~l~v~~~  307 (323)
                      +|.|.|..|.    .++.+.|.|.+.
T Consensus        88 ~C~a~N~~G~----~~~~~~L~V~~~  109 (110)
T d2avga1          88 RCEVSTKDKF----DCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEETTEE----EEEEEEEEEESC
T ss_pred             EEEEEECCCe----EEEEEEEEEEec
Confidence            9999999976    889999998764

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=98.01  Aligned_cols=92  Identities=15%  Similarity=0.278  Sum_probs=68.0

Q ss_pred             eEEeeCCeEE---EEEEEecCCCCcEEEEECCeeeeccCCeeeeecCC--CCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        215 LTVIEGEKLR---LECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHP--EKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       215 ~~~~~g~~~~---l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ..+..|....   +.|.+.|+|.|.+.|++||..+..+..........  ......+.|.|.++..+|.|.|+|.|.|..
T Consensus         7 ~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~   86 (107)
T d1he7a_           7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF   86 (107)
T ss_dssp             CCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETT
T ss_pred             eEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCC
Confidence            3344444444   55588999999999999999987554333222111  122345789999999999999999999999


Q ss_pred             cCCCCCceeEEEEEEcceecC
Q psy15235        290 TRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      |.    ..+.+.|.|.++|..
T Consensus        87 G~----~~~~i~v~v~~~P~~  103 (107)
T d1he7a_          87 GQ----ASASIMAAFMDNPFE  103 (107)
T ss_dssp             EE----EEEEEEECCCSCTTS
T ss_pred             CE----EEEEEEEEEEcCCCC
Confidence            66    889999999888854

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.55  E-value=1.8e-14  Score=97.66  Aligned_cols=95  Identities=19%  Similarity=0.321  Sum_probs=66.6

Q ss_pred             cceee--eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec----cC-Ceeeeec---CCCCCCcceeEEEeecCc
Q psy15235        206 KPTAK--LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR----SQ-GRIKLSE---HPEKGTANSVLQIDEATM  275 (323)
Q Consensus       206 ~p~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~----~~-~~~~~~~---~~~~~~~~~~L~i~~v~~  275 (323)
                      +|.+.  .|.+..+..|+++.|.|.+.|.|.|.+.|++++.....    .+ .......   ........+.|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            45555  46678899999999999999999999999987643211    00 0000000   000111357899999999


Q ss_pred             CCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        276 ADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       276 ~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      +|.|.|+|.|.|..|.    ....++|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~----~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGI----SFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCE----EEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCE----EEEEEEEEE
Confidence            9999999999999966    777888876

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=1.6e-14  Score=93.52  Aligned_cols=87  Identities=17%  Similarity=0.330  Sum_probs=70.3

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.|...+....+..|+++.|.|.+.|.|   .+.++|+++|.++..    ..++......|.|.++..+|+|.|+|.| .
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P---~p~v~W~k~g~~i~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~   73 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKP---RPAVRWLRDGQPLAS----QNRIEVSGGELRFSKLVLEDSGMYQCVA-E   73 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEES---CCEEEEEETTEECCC----CSSEEEETTEEEESSCCGGGCEEEEEEE-E
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEc---CCEEEEEEeeccccc----cceeeeeeeeEEEEeecccCCEEEEEEE-E
Confidence            5555567777788999999999999988   789999999999987    6666655678999999999999999999 7


Q ss_pred             CCCCCCCCceeeeeEEE
Q psy15235        188 PKSTNTTPLAQADFDVI  204 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~  204 (323)
                      |..+  .......|.|.
T Consensus        74 N~~G--~~~~~~~l~V~   88 (89)
T d1cs6a4          74 NKHG--TVYASAELTVQ   88 (89)
T ss_dssp             ETTE--EEEEEEEEEEE
T ss_pred             eCCC--EEEEEEEEEEE
Confidence            7743  34445556554

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=99.39  Aligned_cols=97  Identities=20%  Similarity=0.172  Sum_probs=71.4

Q ss_pred             eeceeEEeeCCeEEEEEEEecCC---CCcEEEEECCeeeec--cCCeeeeecC--CCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSP---PPTVEWRIGNDTYFR--SQGRIKLSEH--PEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p---~~~~~W~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      .|.+..+.+|+.++|.|.+.|.|   .|.+.|++++.....  ...++.....  .......+.|.|.+++.+|+|.|+|
T Consensus         6 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (113)
T d2dava1           6 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRC   85 (113)
T ss_dssp             CCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEE
T ss_pred             CCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEE
Confidence            45577889999999999999998   578999998754321  1222222211  1112235679999999999999999


Q ss_pred             EEeecccCCCCCceeEEEEEEcceecCc
Q psy15235        284 HGNNVATRNSQPNEAFVYVRVKGKSFGY  311 (323)
Q Consensus       284 ~a~n~~g~~~~~~~~~~~l~v~~~~~~~  311 (323)
                      .|.|..|.    ..+.+.|.|.+++...
T Consensus        86 ~a~N~~G~----~~~~~~L~V~~~~~~~  109 (113)
T d2dava1          86 EVTYKDKF----DSCSFDLEVHESTGTT  109 (113)
T ss_dssp             EEECSSCE----EEECCEEEEECCCCSC
T ss_pred             EEEeCCCE----EEEEEEEEEEcCCCcC
Confidence            99999966    7888899998776553

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=8.3e-15  Score=96.65  Aligned_cols=91  Identities=23%  Similarity=0.393  Sum_probs=69.5

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG  285 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a  285 (323)
                      +|.+.. .+..+.+|+++.|.|.+.+ +++.+.|++++..+.... +..+..      ..++|.|.+++.+|.|.|+|.|
T Consensus         5 ~P~i~~-~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~-~~~~~~------~~~~L~I~~v~~~d~G~Y~C~a   75 (96)
T d1l6za2           5 QPFLQV-TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTE-RMTLSQ------NNSILRIDPIKREDAGEYQCEI   75 (96)
T ss_dssp             CCCEEC-SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCT-TEEEET------TTTEEEECSCCGGGCEEEEEEE
T ss_pred             CCeEEc-CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeeccccc-ceeccC------CceEEEEeccchhhceEEEEEE
Confidence            344543 3566889999999999865 567999999999886543 333331      3578999999999999999999


Q ss_pred             eecccCCCCCceeEEEEEEccee
Q psy15235        286 NNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       286 ~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      .|..|.   ..+..+.|.|..+|
T Consensus        76 ~N~~g~---~~S~~~~L~V~~~P   95 (96)
T d1l6za2          76 SNPVSV---RRSNSIKLDIIFDP   95 (96)
T ss_dssp             ESSSCC---EECCCCEEEECCSC
T ss_pred             EeCCCC---eEEEeEEEEEEcCC
Confidence            999865   13456788887766

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.2e-14  Score=95.72  Aligned_cols=92  Identities=28%  Similarity=0.449  Sum_probs=67.7

Q ss_pred             cceee-eeceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeee-----ccCCeeeeecCCCCCCcceeEEEeecC-cCC
Q psy15235        206 KPTAK-LVETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYF-----RSQGRIKLSEHPEKGTANSVLQIDEAT-MAD  277 (323)
Q Consensus       206 ~p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d  277 (323)
                      ||.+. .+....+.+|+.+.|.|.+.|.|++ .+.|++++....     ....++.+...    ....+|.|.++. .+|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~~D   77 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS----QGRSELHIENLNMEAD   77 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE----TTEEEEEECSCCTTTS
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeC----CCEEEEEEeccccccC
Confidence            45454 3445678899999999999999888 699999764321     12233433311    146789999998 579


Q ss_pred             CeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        278 RGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       278 ~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      +|.|+|.|.|..|.    ....+.|.|+
T Consensus        78 ~G~Y~C~A~N~~G~----~~~~~~L~Vr  101 (101)
T d3b5ha1          78 PGQYRCNGTSSKGS----DQAIITLRVR  101 (101)
T ss_dssp             SEEEEEEEEETTEE----EEEEEEEEEC
T ss_pred             CEEEEEEEEECCCE----EEEEEEEEEC
Confidence            99999999999966    7888888874

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.9e-14  Score=94.21  Aligned_cols=88  Identities=24%  Similarity=0.300  Sum_probs=65.6

Q ss_pred             eceeEEeeCCeEEEEEEEecCCC-CcEEEEEC-CeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPP-PTVEWRIG-NDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      |....+..|+++.|.|.+.|.|+ +.+.|+++ +..+.....++......   ...++|.|.+++.+|+|.|+|.|.|..
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~   83 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---DDSSTLTIYNANIDDAGIYKCVVTAED   83 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE---TTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeec---CcceEEEcccCchhhceEEEEEEEeCC
Confidence            34567889999999999999985 68999994 45555444555443111   135789999999999999999999999


Q ss_pred             cCCCCCceeEEEEEEc
Q psy15235        290 TRNSQPNEAFVYVRVK  305 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~  305 (323)
                      |.   .....+.|.|.
T Consensus        84 G~---~~~~tv~l~V~   96 (97)
T d1epfa1          84 GT---QSEATVNVKIF   96 (97)
T ss_dssp             TE---EEEEEEEEEEE
T ss_pred             Cc---EEEEEEEEEEE
Confidence            65   24566777764

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.5e-14  Score=92.65  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=61.7

Q ss_pred             eeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccCC
Q psy15235        214 TLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATRN  292 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~  292 (323)
                      ...+..|+++.|.|.+ .|.|.+.+.|++++..+.   ......       ..++|+|.+++.+|+|.|+|.|.|..|. 
T Consensus        12 ~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~---~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~Asn~~g~-   80 (90)
T d1gsma1          12 VVAVALGASRQLTCRLACADRGASVQWRGLDTSLG---AVQSDT-------GRSVLTVRNASLSAAGTRVCVGSCGGRT-   80 (90)
T ss_dssp             EEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC---CEEEES-------SEEEEEECSCCGGGCEEEEEEEEETTEE-
T ss_pred             eEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee---eeeccC-------ceeeEEcCccChhhCCcEEEEEEeCCCc-
Confidence            4567789999999998 478999999998776552   111111       3688999999999999999999998855 


Q ss_pred             CCCceeEEEEEE
Q psy15235        293 SQPNEAFVYVRV  304 (323)
Q Consensus       293 ~~~~~~~~~l~v  304 (323)
                         .+.++.|.|
T Consensus        81 ---~~~s~~l~V   89 (90)
T d1gsma1          81 ---FQHTVQLLV   89 (90)
T ss_dssp             ---EEEEEEEEE
T ss_pred             ---EEEEEEEEE
Confidence               778887776

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.7e-15  Score=103.63  Aligned_cols=88  Identities=25%  Similarity=0.465  Sum_probs=67.4

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC----------------------------eeeeecCCCCC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG----------------------------RIKLSEHPEKG  262 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~----------------------------~~~~~~~~~~~  262 (323)
                      .+....+.+|+.++|.|.+.|.|.|.+.|++++..+.....                            ++.+.    ..
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~   90 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVE----TT   90 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEE----EE
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEE----EC
Confidence            34567788999999999999999999999998766532110                            11110    00


Q ss_pred             CcceeEEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEcc
Q psy15235        263 TANSVLQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       263 ~~~~~L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ...++|+|.++..+|+|.|+|.|.|..|.    ..+.+.|.|.+
T Consensus        91 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~----~~~~~~l~V~d  130 (130)
T d1gxea_          91 KDRSIFTVEGAEKEDEGVYTVTVKNPVGE----DQVNLTVKVID  130 (130)
T ss_dssp             TTEEEEECSCCCTTTCEEEEEEEECSSCE----EEEEEEEEECC
T ss_pred             CCEEEEEECcCChhcCEEEEEEEEECCCE----EEEEEEEEEEC
Confidence            13578999999999999999999999966    88888888854

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-14  Score=96.04  Aligned_cols=88  Identities=14%  Similarity=0.156  Sum_probs=67.9

Q ss_pred             eEEeeCCeEEEEE------EEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        215 LTVIEGEKLRLEC------LVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       215 ~~~~~g~~~~l~C------~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      ..+..|....|.|      .+.++|.|.+.|++|+..+.....++...        +..|.|.++..+|+|.|+|.|.|.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~--------~~~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV--------KDRLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE--------TTEEEESSCCGGGCEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec--------CCEEEEcccccccCcEEEEEEEEC
Confidence            4567899999999      56788999999999999987655554444        567999999999999999999998


Q ss_pred             ccCCCCCceeEEEEEEcceecC
Q psy15235        289 ATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       289 ~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      .|....+....+.|.|.....+
T Consensus        81 ~~g~~~~vt~~i~~~v~~~~~P  102 (103)
T d1iray2          81 YLGKQYPITRVIEFITLEENKP  102 (103)
T ss_dssp             ETTEEEEEEEEEEEEEECCCCC
T ss_pred             cCCEEEEEEEEEEEEECCCCCC
Confidence            8542223456666666655443

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.6e-14  Score=98.03  Aligned_cols=90  Identities=20%  Similarity=0.287  Sum_probs=63.5

Q ss_pred             eEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCCC---CCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        215 LTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHPE---KGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ..+.+|+++.|.|.+ .|+|.+.+.|++++..+..............   .....+.|.|.+++.+|+|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            357789999999998 5899999999999987754332221110000   012456899999999999999999999997


Q ss_pred             CCCCCceeEEEEEEcc
Q psy15235        291 RNSQPNEAFVYVRVKG  306 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~  306 (323)
                      .  ...+..+.|.|.+
T Consensus        92 ~--~~~s~~v~l~V~~  105 (110)
T d1f97a2          92 T--AMRSEAAHMDAVE  105 (110)
T ss_dssp             C--CEECCCEEEEEES
T ss_pred             c--EEEEEEEEEEEEe
Confidence            6  2334566676654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.6e-16  Score=108.01  Aligned_cols=106  Identities=20%  Similarity=0.377  Sum_probs=80.0

Q ss_pred             eEEEecceeeeeceeEEeeCCeEEEEEEEecCC-CCcEEEEECCeeeeccC-CeeeeecCCCCCCcceeEEEeecCcCC-
Q psy15235        201 FDVIMKPTAKLVETLTVIEGEKLRLECLVVGSP-PPTVEWRIGNDTYFRSQ-GRIKLSEHPEKGTANSVLQIDEATMAD-  277 (323)
Q Consensus       201 l~v~~~p~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d-  277 (323)
                      |+|..||.+..+....+.+|+.+.|.|.+.+.| ++.+.|++++..+.... .++.+..........++|.|.++..+| 
T Consensus         2 L~V~~Pp~i~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~   81 (115)
T d2crya1           2 LTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADF   81 (115)
T ss_dssp             CCCCSSCCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHH
T ss_pred             eEEecCCEEecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcC
Confidence            567778888776777788999999999998865 45799999998875432 333332211122234679999999999 


Q ss_pred             CeEEEEEEeecccCCCCCceeEEEEEEcceecC
Q psy15235        278 RGNYYCHGNNVATRNSQPNEAFVYVRVKGKSFG  310 (323)
Q Consensus       278 ~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~~  310 (323)
                      +|.|+|.|.|..|.    .+..+.|.|.+.+..
T Consensus        82 ~G~Y~C~A~N~~G~----~~~~~~L~V~~~~~~  110 (115)
T d2crya1          82 QTIYNCTAWNSFGS----DTEIIRLKEQGSEMS  110 (115)
T ss_dssp             HSCEEEEEECSSCE----EEEEECCCCSCSSCC
T ss_pred             CeEEEEEEEECCCe----EEEEEEEEEECCCCC
Confidence            69999999999966    899999999876544

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.53  E-value=2e-14  Score=92.79  Aligned_cols=79  Identities=24%  Similarity=0.304  Sum_probs=62.0

Q ss_pred             ceeEEeeCCeEEEEEEEecC-CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        213 ETLTVIEGEKLRLECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +...+.+|++++|.|.+.+. |.+.+.|++|+..+....             ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~-------------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~   74 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR-------------SDPNFSIPQANHSHSGDYHCTGNIGYTL   74 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES-------------SCCEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc-------------cccccccCccCHHHCCeEEEEEEeCCCC
Confidence            34567899999999999654 566899999998875321             2567999999999999999999999865


Q ss_pred             CCCCceeEEEEEEcce
Q psy15235        292 NSQPNEAFVYVRVKGK  307 (323)
Q Consensus       292 ~~~~~~~~~~l~v~~~  307 (323)
                         ..+..+.|.|+++
T Consensus        75 ---~~S~~v~l~V~~P   87 (88)
T d2fcba2          75 ---YSSKPVTITVQAP   87 (88)
T ss_dssp             ---EECCCEEEEECCC
T ss_pred             ---EEeeeEEEEEeCC
Confidence               1345677777663

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=1.8e-14  Score=95.14  Aligned_cols=74  Identities=23%  Similarity=0.425  Sum_probs=58.7

Q ss_pred             eeceeEEeeC---CeEEEEEEEecCCCCcEEEEECCeeeeccCCe-eeeecCCCCCCcceeEEEeecCcCCCeEEEEEEe
Q psy15235        211 LVETLTVIEG---EKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR-IKLSEHPEKGTANSVLQIDEATMADRGNYYCHGN  286 (323)
Q Consensus       211 ~~~~~~~~~g---~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~  286 (323)
                      .+.+..+.+|   +++.|.|.+.|.|.|.+.|++||..+...... ....       ....|.|..+..+|+|.|+|.|.
T Consensus        10 ~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1          10 QPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-------AGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             CCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE-------TTEEEEESCCHHHHCEEEEEEEE
T ss_pred             eCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEee-------eeeEEEEecccccCCEEEEEEEE
Confidence            3444555554   78999999999999999999999988654333 3222       35778899999999999999999


Q ss_pred             ecccC
Q psy15235        287 NVATR  291 (323)
Q Consensus       287 n~~g~  291 (323)
                      |..|.
T Consensus        83 N~~G~   87 (97)
T d1cs6a1          83 NARGT   87 (97)
T ss_dssp             ETTEE
T ss_pred             ECCCE
Confidence            99976

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.3e-14  Score=93.19  Aligned_cols=70  Identities=19%  Similarity=0.251  Sum_probs=59.9

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...+.+|+++.|.|.+.| |+|.+.|+++|..+.....++.+.       ....|.|.++..+|+|.|+|.|.|..|.
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~-------~~~~L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLM-------GRKNLLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCT-------TTTCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecc-------eeeEEEECCCCHHHCcEEEEEEEEcCCC
Confidence            456889999999999987 678999999999887666665554       3567999999999999999999999865

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.50  E-value=3.9e-14  Score=93.55  Aligned_cols=88  Identities=16%  Similarity=0.255  Sum_probs=69.7

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      |.+...|....+.+|+++.|.|.+.|.|   .+.|.|++++..+..    +.++.    .....|.|.++..+|+|.|+|
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P---~p~v~W~~~~~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   74 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASS---PPVVTWHKDDRELKQ----SVKYMKRYNGNDYGLTINRVKGDDKGEYTV   74 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSS---CCEEEEEETTEECCS----BTTBBCCCSTTEEEEEESCCCSGGGSCEEE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcC---CCEEEEEEeeeccce----eeEEEEEecCCeeEEEeCCCceecCEEEEE
Confidence            4566677777788999999999999988   789999999999876    33433    556689999999999999999


Q ss_pred             EEEcCCCCCCCCceeeeeEEEe
Q psy15235        184 RLIDPKSTNTTPLAQADFDVIM  205 (323)
Q Consensus       184 ~~~~~~~~~~~~~~~~~l~v~~  205 (323)
                      .| .|..+.  .+..+.|.|..
T Consensus        75 ~a-~N~~G~--~~~~~~l~V~~   93 (97)
T d1koaa1          75 RA-KNSYGT--KEEIVFLNVTR   93 (97)
T ss_dssp             EE-EETTEE--EEEEECCEEEC
T ss_pred             EE-EECCCE--EEEEEEEEEee
Confidence            99 777433  45556666654

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1e-13  Score=92.22  Aligned_cols=85  Identities=24%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .+....+..|+.+.|.|.+.+.+   .+.+.|++++..+..    ..++.    .....|.|.++..+|+|.|+|.+ .|
T Consensus         6 ~p~~~~v~~G~~~~l~C~v~g~p---~p~v~W~k~~~~l~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N   77 (101)
T d2cqva1           6 FPEDQKVRAGESVELFGKVTGTQ---PITCTWMKFRKQIQE----SEHMKVENSENGSKLTILAARQEHCGCYTLLV-EN   77 (101)
T ss_dssp             CCCSEEEETTCCEEEEEEEESSS---SCEEEEEESSSBCCC----SSSEEEEECSSEEEEEETTCCTTTCEEEEEEE-EC
T ss_pred             eCCcEEEeCCCcEEEEEEEEecC---CCEEEEEeCceeecc----CCcEEEEEecceeEEEEeeCCcccCEEEEEEE-EE
Confidence            45566688999999999999988   789999999999876    44443    45568999999999999999999 78


Q ss_pred             CCCCCCCceeeeeEEEecc
Q psy15235        189 KSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v~~~p  207 (323)
                      ..+  ..+.++.|.|..+|
T Consensus        78 ~~G--~~~~~~~l~V~~~P   94 (101)
T d2cqva1          78 KLG--SRQAQVNLTVVDKP   94 (101)
T ss_dssp             SSC--EEECCEEEEEECSC
T ss_pred             CCC--EEEEEEEEEEEecC
Confidence            744  45666677777655

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.2e-14  Score=91.43  Aligned_cols=81  Identities=22%  Similarity=0.273  Sum_probs=63.5

Q ss_pred             eceeEEeeCCeEEEEEEEecC-CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        212 VETLTVIEGEKLRLECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ++...+.+|++++|.|.+.+. |+..+.|++||..+....             ....|.|.+++.+|+|+|.|.|.|..|
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~i~~~~~~dsG~Y~C~a~n~~~   73 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------------ENHNISITNATVEDSGTYYCTGKVWQL   73 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------------CSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-------------ccceEEEeeeeeecCcEEEEEEEeCCC
Confidence            345668899999999999665 455899999998774321             256799999999999999999999875


Q ss_pred             CCCCCceeEEEEEEccee
Q psy15235        291 RNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~~~  308 (323)
                      .   ..+..+.|.|...|
T Consensus        74 ~---~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          74 D---YESEPLNITVIKAP   88 (89)
T ss_dssp             E---EECCCEEEEEECSC
T ss_pred             C---eEeeeEEEEEEeCC
Confidence            4   24566777777665

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.49  E-value=4.3e-14  Score=91.33  Aligned_cols=78  Identities=19%  Similarity=0.283  Sum_probs=60.4

Q ss_pred             ceeEEeeCCeEEEEEEEecC-CCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        213 ETLTVIEGEKLRLECLVVGS-PPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      +...+.+|++++|.|.+.+. |.+.+.|++||..+....             ....|.|.+++.+|+|.|.|.|.|..|.
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~-------------~~~~l~I~~v~~~dsG~Y~C~a~n~~~~   76 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH-------------HNSDFHIPKATLKDSGSYFCRGLVGSKN   76 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE-------------ECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec-------------cccccEECccceeccceEEEEEEeCCCC
Confidence            34567899999999999754 555899999998765321             2567999999999999999999998865


Q ss_pred             CCCCceeEEEEEEcc
Q psy15235        292 NSQPNEAFVYVRVKG  306 (323)
Q Consensus       292 ~~~~~~~~~~l~v~~  306 (323)
                      .   .+..+.|.|++
T Consensus        77 ~---~S~~v~itV~E   88 (89)
T d1fnla2          77 V---SSETVNITITQ   88 (89)
T ss_dssp             E---ECCCEEEEEEC
T ss_pred             e---EEeeEEEEEEe
Confidence            1   33556666654

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=6.8e-14  Score=93.38  Aligned_cols=90  Identities=21%  Similarity=0.329  Sum_probs=61.0

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeec---cCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR---SQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      .+....+.+|+++.|.|.+.|.|.|.+.|++++.....   .................++|+|.+++.+|+|.|+|.|.|
T Consensus         7 ~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n   86 (102)
T d1f97a1           7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE   86 (102)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             cCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEE
Confidence            34457788999999999999999999999986543221   111111000000011356799999999999999999999


Q ss_pred             cccCCCCCceeEEEEEE
Q psy15235        288 VATRNSQPNEAFVYVRV  304 (323)
Q Consensus       288 ~~g~~~~~~~~~~~l~v  304 (323)
                      ..|.    ....+.|.|
T Consensus        87 ~~g~----~~~~~~v~v   99 (102)
T d1f97a1          87 EGGQ----NYGEVSIHL   99 (102)
T ss_dssp             TTSS----SEEEEEEEE
T ss_pred             CCCC----EEEEEEEEE
Confidence            9977    444444433

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.3e-15  Score=98.39  Aligned_cols=88  Identities=18%  Similarity=0.255  Sum_probs=62.8

Q ss_pred             eEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccCCeeeeecCC--CCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        215 LTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQGRIKLSEHP--EKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ..+.+|+.++|.|.+ .|+|.+.+.|++++..+.............  ......+.|+|.+++.+|.|.|+|.|.|..|.
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   91 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT   91 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence            457789999999998 589999999999998875433222111101  11124678999999999999999999999976


Q ss_pred             CCCCceeEEEEEE
Q psy15235        292 NSQPNEAFVYVRV  304 (323)
Q Consensus       292 ~~~~~~~~~~l~v  304 (323)
                        ...+..+.|.|
T Consensus        92 --~~~s~~v~v~v  102 (104)
T d1nbqa2          92 --PMTSNAVRMEA  102 (104)
T ss_dssp             --CEECCCBCCEE
T ss_pred             --eEEEEEEEEEE
Confidence              22333444444

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.48  E-value=1.6e-13  Score=90.66  Aligned_cols=88  Identities=17%  Similarity=0.171  Sum_probs=69.1

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y  181 (323)
                      .|.+...+....+.+|+.+.|.|.+.|.|   .+.+.|++|+.++..    +.+..     .....|.|.++..+|+|.|
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P---~p~v~W~k~~~~i~~----~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y   76 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKP---DPECEWYKNGVKIER----SDRIYWYWPEDNVCELVIRDVTGEDSASI   76 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----CSSEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEec---CCeEEEEeCceEEee----eeeeEEEeccceEEEEEeccCccccCEEE
Confidence            45565567777788999999999999988   789999999999876    43332     3456899999999999999


Q ss_pred             EEEEEcCCCCCCCCceeeeeEEE
Q psy15235        182 SCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       182 ~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      +|.+ .|..|.  ......|.|.
T Consensus        77 ~c~a-~N~~G~--~~~~~~L~V~   96 (98)
T d1g1ca_          77 MVKA-INIAGE--TSSHAFLLVQ   96 (98)
T ss_dssp             EEEE-EETTEE--EEEEEEEEEE
T ss_pred             EEEE-EECCcE--EEEEEEEEEE
Confidence            9999 777433  4555666654

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.48  E-value=2e-13  Score=90.92  Aligned_cols=89  Identities=19%  Similarity=0.340  Sum_probs=70.0

Q ss_pred             eeeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCee
Q psy15235        106 ITGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQ  180 (323)
Q Consensus       106 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~  180 (323)
                      ..|.+...+....+..|+++.|.|.+.+.|   .+.+.|+++|..+..    +.++.     .....|.|.++..+|+|.
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P---~p~v~W~k~~~~i~~----~~~~~~~~~~~~~~~L~I~~~~~~D~G~   79 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYP---DPEVMWFKDDNPVKE----SRHFQIDYDEEGNCSLTISEVCGDDDAK   79 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEES---CCEEEEEETTEECCC----SSSEEEEECTTCEEEEEESSCCGGGCEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEecc---CCeEEEEeeeccccc----eeeEeEEEecCceeeeEecCCCHHhCEE
Confidence            456666667777788999999999999988   789999999999977    44443     345789999999999999


Q ss_pred             EEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        181 YSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       181 y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      |+|.| .|..|.  ...++.|.|.
T Consensus        80 Y~C~a-~N~~G~--~~~~~~L~V~  100 (102)
T d1fhga_          80 YTCKA-VNSLGE--ATCTAELLVE  100 (102)
T ss_dssp             EEEEE-EETTEE--EEEEEEEEEE
T ss_pred             EEEEE-EECCcE--EEEEEEEEEE
Confidence            99999 777443  4455555554

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.3e-14  Score=92.50  Aligned_cols=76  Identities=21%  Similarity=0.322  Sum_probs=58.5

Q ss_pred             cceeee-eceeEEeeCCeEEEEEEEecCCC-CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        206 KPTAKL-VETLTVIEGEKLRLECLVVGSPP-PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       206 ~p~~~~-~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      +|.+.. +....+.+|+++.|.|.+.|.|+ ++++|++++..+... .+....       .+.+|.|.+++.+|+|.|+|
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~-~~~~~~-------~~~~L~I~~v~~~D~G~Y~C   77 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH-PSRWAG-------MGRRLLLRSVQLHDSGNYSC   77 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC-CEEEEE-------ESSEEEECSCCGGGCEEEEE
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccce-eeEEec-------CCCEEEECCCChhcCEEEEE
Confidence            344443 33566778999999999988765 589999999887644 333333       36789999999999999999


Q ss_pred             EEeecc
Q psy15235        284 HGNNVA  289 (323)
Q Consensus       284 ~a~n~~  289 (323)
                      .|.|..
T Consensus        78 ~a~n~~   83 (93)
T d1n26a1          78 YRAGRP   83 (93)
T ss_dssp             ESSSSC
T ss_pred             EECCcc
Confidence            998765

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=92.69  Aligned_cols=85  Identities=20%  Similarity=0.315  Sum_probs=63.5

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeee----ecCCC---CCCcceeEEEeecCcCCCe-EEEEEEe
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKL----SEHPE---KGTANSVLQIDEATMADRG-NYYCHGN  286 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~L~i~~v~~~d~G-~y~C~a~  286 (323)
                      ..+..|+++.|.|.+.|+|.|.+.|+++|..+.........    .....   .....++|+|.+++.+|.| +|+|.|.
T Consensus        12 i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~   91 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK   91 (107)
T ss_dssp             EECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEE
T ss_pred             EEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEE
Confidence            44667999999999999999999999999887643322111    00000   1123468999999999999 5999999


Q ss_pred             ecccCCCCCceeEEEEE
Q psy15235        287 NVATRNSQPNEAFVYVR  303 (323)
Q Consensus       287 n~~g~~~~~~~~~~~l~  303 (323)
                      |..|.    .+..+.|.
T Consensus        92 N~~G~----~~~~i~L~  104 (107)
T d1iray3          92 NTHGI----DAAYIQLI  104 (107)
T ss_dssp             CSSCE----EEEEEEEE
T ss_pred             eCCCe----EEEEEEEE
Confidence            99966    77777775

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-13  Score=89.70  Aligned_cols=73  Identities=21%  Similarity=0.310  Sum_probs=58.7

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+...+.+|+.+.|.|.+. .|++.+.|++||..+..+..++.+..  .+  ....|.|.++..+|+|.|+|.|.|..
T Consensus        13 ~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~c~a~n~~   85 (94)
T d1pd6a_          13 EPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFES--IG--AKRTLTISQCSLADDAAYQCVVGGEK   85 (94)
T ss_dssp             CSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEE--ET--TEEEEEECSCSSSSCEEEEEEETTEE
T ss_pred             CCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeec--cC--CeEEeecCCCCceecEEEEEEEeeEE
Confidence            3345688999999999985 58889999999999976655555442  11  35789999999999999999998765

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.1e-13  Score=86.30  Aligned_cols=82  Identities=23%  Similarity=0.465  Sum_probs=61.5

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCc-eEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDY-QIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      |.+...|....+.+|+++.|.|.+.|.|   .+ +|+|+|||..+..         .....+.|.....+|+|.|+|.| 
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P---~P~~i~W~k~g~~i~~---------~~~~~~~l~~~~~~d~G~Y~C~A-   68 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPP---EPVTIVWWRGTTKIGG---------PAPSPSVLNVTGVTQSTMFSCEA-   68 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSS---SCCEEEEEETTEECSC---------SEESSEEEEECCCSSCEEEEEEE-
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCC---cceEEEEEECCEECCC---------CCCcceEEecCCccccEEEEEEE-
Confidence            4566677778888999999999999988   55 9999999998876         23345566777778999999999 


Q ss_pred             cCCCCCCCCceeeeeEE
Q psy15235        187 DPKSTNTTPLAQADFDV  203 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v  203 (323)
                      .|..+. ..+..+.|.|
T Consensus        69 ~N~~G~-~~S~~~~v~V   84 (85)
T d1rhfa2          69 HNLKGL-ASSRTATVHL   84 (85)
T ss_dssp             EETTEE-EECCCEEEEE
T ss_pred             EcCCCc-EEEEEEEEEE
Confidence            777542 2333444443

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.44  E-value=2.5e-13  Score=87.81  Aligned_cols=86  Identities=26%  Similarity=0.479  Sum_probs=64.8

Q ss_pred             eeeeeeCC-ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEE
Q psy15235        107 TGNYDIEP-KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       107 ~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      .|.+...| ....+.+|+++.|.|.+.|.|   .+.|.|+++|.++..     .++......|.|.++..+|+|.|+|.|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P---~p~v~W~~~~~~i~~-----~~~~~~~~~L~i~~v~~~d~G~Y~C~a   73 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLP---APNVVWSHNAKPLSG-----GRATVTDSGLVIKGVKNGDKGYYGCRA   73 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEES---CCCCEEEETTEECCS-----SSEEEETTEEEESSCCSTTCEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeC---CCEEEEEeCCccCcc-----ccEEEeeeeEEECCCChhhCEEEEEEE
Confidence            35566544 445678999999999999988   789999999999864     345434457999999999999999999


Q ss_pred             EcCCCCCCCCceeeeeEE
Q psy15235        186 IDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       186 ~~~~~~~~~~~~~~~l~v  203 (323)
                       .|..|.  ....+.|.|
T Consensus        74 -~N~~G~--~~~~~~l~V   88 (89)
T d1biha4          74 -TNEHGD--KYFETLVQV   88 (89)
T ss_dssp             -EETTEE--EEEEEEEEE
T ss_pred             -EECCCE--EEEEEEEEE
Confidence             777432  344444443

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.44  E-value=1.2e-13  Score=90.37  Aligned_cols=86  Identities=16%  Similarity=0.195  Sum_probs=65.9

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSC  183 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C  183 (323)
                      |.+...+....+..|+++.|.|.+.|.|   .+.+.|++++..+..    ..++.    .....|.|.++..+|+|.|+|
T Consensus         3 P~i~~~~~~~~v~~G~~~~l~c~~~g~P---~p~v~W~~~~~~i~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c   75 (93)
T d1wiua_           3 PKILTASRKIKIKAGFTHNLEVDFIGAP---DPTATWTVGDSGAAL----APELLVDAKSSTTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CEECCCCCEEEECSSBCCEEEEEEECCS---SCEEEEECSSSSCBC----STTSEEEEETTEEEEECTTBCGGGCEEEEE
T ss_pred             CeEEeCCCcEEEeCCCeEEEEEEEEEec---CCeEEEEeeeeecee----eeeeeecccccceeeccccccccccEEEEE
Confidence            4444455666788999999999999998   789999999988876    33332    556789999999999999999


Q ss_pred             EEEcCCCCCCCCceeeeeEE
Q psy15235        184 RLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       184 ~~~~~~~~~~~~~~~~~l~v  203 (323)
                      .| .|..|  ..+..+.|.|
T Consensus        76 ~a-~N~~G--~~~~~~~l~V   92 (93)
T d1wiua_          76 KV-KNELG--EDEAIFEVIV   92 (93)
T ss_dssp             EE-EETTE--EEEEEEEEEE
T ss_pred             EE-EECCC--EEEEEEEEEE
Confidence            99 77733  3344444443

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2e-13  Score=89.90  Aligned_cols=92  Identities=14%  Similarity=0.129  Sum_probs=61.0

Q ss_pred             ceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEE--CCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        207 PTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRI--GNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       207 p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      |.+..+.+..+.+|+++.|.|.+.|.|.|.+.|++  ++...........+.  .  .....+|.|.++..+|+|.|+|.
T Consensus         3 P~f~~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           3 PHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS--S--RRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             CEECCCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEE--T--TEEEEEEEECSCCGGGCSEEEEE
T ss_pred             CeecccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEE--e--ecCceEEEECCCCHHHCeEEEEE
Confidence            33444557789999999999999999988655432  222222111222222  1  11346799999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEc
Q psy15235        285 GNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      |.|..|.   ..+..+.|.|+
T Consensus        79 a~N~~G~---~~s~~a~L~Vk   96 (96)
T d2c9aa1          79 IRTEGGV---GISNYAELVVK   96 (96)
T ss_dssp             EEETTEE---EEEEEEEEEEC
T ss_pred             EEeCCCe---EEEEEEEEEEC
Confidence            9999975   13344677664

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.5e-14  Score=94.08  Aligned_cols=78  Identities=21%  Similarity=0.351  Sum_probs=56.5

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCe-eeeecCCCC--CCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGR-IKLSEHPEK--GTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+...... .........  ....++|.|.+++.+|+|.|+|.|.|..|
T Consensus        13 ~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G   92 (105)
T d1nbqa1          13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG   92 (105)
T ss_dssp             BCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTS
T ss_pred             eEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCC
Confidence            456789999999999999999999999977654321110 001100000  01246899999999999999999999997


Q ss_pred             C
Q psy15235        291 R  291 (323)
Q Consensus       291 ~  291 (323)
                      .
T Consensus        93 ~   93 (105)
T d1nbqa1          93 N   93 (105)
T ss_dssp             S
T ss_pred             C
Confidence            7

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.42  E-value=2.9e-13  Score=86.38  Aligned_cols=70  Identities=27%  Similarity=0.383  Sum_probs=56.3

Q ss_pred             ecceeee-eceeEEeeCCeEEEEEEEecCCCCc-EEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235        205 MKPTAKL-VETLTVIEGEKLRLECLVVGSPPPT-VEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY  282 (323)
Q Consensus       205 ~~p~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~  282 (323)
                      .+|.+.+ |....+.+|++++|.|.+.|.|.+. +.|++++..+..               ...+|.|.+++.+|+|.|+
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~   68 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS---------------QASSYFIDAATVNDSGEYR   68 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES---------------SCSEEEESSCCGGGCEEEE
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee---------------cceeeEecCCcccCCEEEE
Confidence            3566654 4467899999999999999988774 777888876642               2567999999999999999


Q ss_pred             EEEeecc
Q psy15235        283 CHGNNVA  289 (323)
Q Consensus       283 C~a~n~~  289 (323)
                      |.|.|..
T Consensus        69 C~a~~s~   75 (84)
T d1fnla1          69 CQTNLST   75 (84)
T ss_dssp             EECSSSC
T ss_pred             EEccCCC
Confidence            9998765

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=4.9e-13  Score=88.71  Aligned_cols=93  Identities=18%  Similarity=0.311  Sum_probs=66.2

Q ss_pred             eeeeeeCCcee--EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYK--VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~--~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .|.+...+...  .+..|+++.|.|.+.|.|   .+.|.|+++|..+........+..  .....|.|.+++.+|+|.|+
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P---~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   79 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFP---EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV   79 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEES---CCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEec---CCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEE
Confidence            44454433332  356799999999999988   789999999998865322222222  45678999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEe
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIM  205 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~  205 (323)
                      |.| .|..+  .....+.|.|..
T Consensus        80 C~a-~N~~G--~~~~~~~l~V~~   99 (100)
T d1qz1a3          80 CIA-ENKAG--EQDASIHLKVFA   99 (100)
T ss_dssp             EEE-EETTE--EEEEEEEEEEEC
T ss_pred             EEE-EECCC--EEEEEEEEEEEE
Confidence            999 77743  345556666653

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.41  E-value=4.6e-13  Score=88.20  Aligned_cols=83  Identities=16%  Similarity=0.332  Sum_probs=62.4

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-EeceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT  193 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  193 (323)
                      ....+..|+++.|.|.+.|.|   .+.|.|++||.++.......... ......|.|.++..+|+|.|+|.+ .|..+  
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P---~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~~G--   86 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNP---MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVV-ENEYG--   86 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEES---CCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEE-EETTE--
T ss_pred             ccEEECCCCcEEEEEEEeEEC---CCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEE-EECCC--
Confidence            345578899999999999988   78999999999987622222221 245678999999999999999999 77743  


Q ss_pred             CCceeeeeEE
Q psy15235        194 TPLAQADFDV  203 (323)
Q Consensus       194 ~~~~~~~l~v  203 (323)
                      ....++.|+|
T Consensus        87 ~~~~~~~l~V   96 (97)
T d3dara1          87 SINHTYHLDV   96 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            3444555554

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.2e-13  Score=88.58  Aligned_cols=75  Identities=15%  Similarity=0.211  Sum_probs=60.3

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      |.+.+.+....+.+|++++|.|.+.+.++  .++|+|+|++..+..    ..+.. ..+..|.|.+++.+|+|.|+|.+ 
T Consensus         7 P~~~~~~~~v~~~~G~~v~L~C~~~g~~~--~~~i~W~k~~~~l~~----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-   79 (93)
T d1n26a1           7 PAQEVARGVLTSLPGDSVTLTCPGVEPED--NATVHWVLRKPAAGS----HPSRWAGMGRRLLLRSVQLHDSGNYSCYR-   79 (93)
T ss_dssp             CCCCCCTTEEEECTTCCEEEECTTSCTTC--CSEEEEEEECSSSSC----CCEEEEEESSEEEECSCCGGGCEEEEEES-
T ss_pred             CcEEeCCCCEEEeCCCcEEEEEEeecCCC--CceEEEEEccccccc----eeeEEecCCCEEEECCCChhcCEEEEEEE-
Confidence            45555666677888999999999988764  469999999988865    34433 55678999999999999999999 


Q ss_pred             cCC
Q psy15235        187 DPK  189 (323)
Q Consensus       187 ~~~  189 (323)
                      .|.
T Consensus        80 ~n~   82 (93)
T d1n26a1          80 AGR   82 (93)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            665

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.41  E-value=5.8e-13  Score=85.24  Aligned_cols=69  Identities=20%  Similarity=0.348  Sum_probs=56.3

Q ss_pred             cceeee-eceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        206 KPTAKL-VETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       206 ~p~~~~-~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      +|.+.+ +....+.+|++++|.|.+.++|.+ .+.|++||..+..               ....|.|.+++.+|+|.|+|
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~---------------~~~~l~i~~v~~~dsG~Y~C   68 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT---------------HTQPSYRFKANNNDSGEYTC   68 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT---------------CCSSEEEEECCGGGCEEEEE
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc---------------cccceEEeeccccCCcEEEE
Confidence            345554 345778999999999999988776 6999999987642               24679999999999999999


Q ss_pred             EEeecc
Q psy15235        284 HGNNVA  289 (323)
Q Consensus       284 ~a~n~~  289 (323)
                      .|.|..
T Consensus        69 ~a~ns~   74 (85)
T d2fcba1          69 QTGQTS   74 (85)
T ss_dssp             ECTTSB
T ss_pred             ECCCCc
Confidence            999876

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=87.84  Aligned_cols=69  Identities=26%  Similarity=0.378  Sum_probs=52.8

Q ss_pred             cceeeee-ceeEEeeCCeEEEEEEEecCCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        206 KPTAKLV-ETLTVIEGEKLRLECLVVGSPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       206 ~p~~~~~-~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      +|.|.+. ....+.+|++++|.|.+.+.|.+ .+.|++++..+..               ....|.|.+++.+|+|.|.|
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~i~~v~~~d~G~Y~C   65 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE---------------TNSSLNIVNAKFEDSGEYKC   65 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC---------------CSSEEEECSCCGGGCEEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec---------------ccceeEECCCChhhCCcEEE
Confidence            3555533 35678999999999999999877 4777888876642               25679999999999999999


Q ss_pred             EEeecc
Q psy15235        284 HGNNVA  289 (323)
Q Consensus       284 ~a~n~~  289 (323)
                      .|.|..
T Consensus        66 ~a~~s~   71 (82)
T d1f2qa1          66 QHQQVN   71 (82)
T ss_dssp             ECTTSS
T ss_pred             EecCCC
Confidence            998865

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.3e-13  Score=88.23  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=62.8

Q ss_pred             eeEEeeCCeEEEEEEEec-CCCC--cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        214 TLTVIEGEKLRLECLVVG-SPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g-~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ...+.+|+.++|.|.+.| .|.+  .+.|++++..+.....        ......++|+|..+..+|.|.|+|.|.|..|
T Consensus        13 ~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~--------~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g   84 (103)
T d1iama1          13 PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA--------VGEPAEVTTTVLVRRDHHGAQFSCRTELDLR   84 (103)
T ss_dssp             CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--------CTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             CceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc--------ccccceEEEEEeeehhHCCCEEEEEEEeCCC
Confidence            455788999999999976 5655  5889999988753211        1112467899999999999999999999996


Q ss_pred             CCCCCceeEEEEEEccee
Q psy15235        291 RNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~~~  308 (323)
                      .    ....+.+++..+.
T Consensus        85 ~----~~~~~~~~~s~p~   98 (103)
T d1iama1          85 P----QGLELFENTSAPY   98 (103)
T ss_dssp             G----GTSCEEEEECCCE
T ss_pred             C----ccCeEeeeEcCCC
Confidence            6    5556666666543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.4e-12  Score=84.75  Aligned_cols=85  Identities=18%  Similarity=0.312  Sum_probs=61.8

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKST  191 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~  191 (323)
                      |....+.+|+++.|.|.+.+.|   .+.+.|++++..+...........  .....|.|.+++.+|+|.|+|.| .|..+
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~G   78 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGME---EPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV-EDGGE   78 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCS---SCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEE-SSCTT
T ss_pred             CeeEEEcCCCeEEEEEEEEecC---CceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEE-EECCC
Confidence            5556788999999999999988   789999999998876211111111  33457999999999999999999 77744


Q ss_pred             CCCCceeeeeEE
Q psy15235        192 NTTPLAQADFDV  203 (323)
Q Consensus       192 ~~~~~~~~~l~v  203 (323)
                      .. .+..+.|.|
T Consensus        79 ~~-~S~~~~l~V   89 (91)
T d1rhfa1          79 TE-ISQPVWLTV   89 (91)
T ss_dssp             CE-ECCCEEEEE
T ss_pred             CE-EEEEEEEEE
Confidence            32 233455544

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.39  E-value=1.8e-13  Score=89.11  Aligned_cols=81  Identities=16%  Similarity=0.340  Sum_probs=64.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .|....+.+|+++.|.|.+.|.|   .+.+.|+++|..+..    ..++.    .....|.|.++..+|+|.|+|.+ .|
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P---~p~v~W~~~g~~l~~----~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~N   76 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEP---VPTVTWLRKGQVLST----SARHQVTTTKYKSTFEISSVQASDEGNYSVVV-EN   76 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSS---CCCCEEESSSSTTCS----SSSCEEEECSSEEEEECSSCCSCCCEEEEEEC-BC
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEe---CCeEEEEEeeccccc----ccceeeeeecceeEEeecCCCHHHCEEEEEEE-EE
Confidence            56666788999999999999988   789999999988876    33322    56788999999999999999999 88


Q ss_pred             CCCCCCCceeeeeEE
Q psy15235        189 KSTNTTPLAQADFDV  203 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v  203 (323)
                      ..+.  ....+.|.|
T Consensus        77 ~~G~--~~~~~~l~V   89 (91)
T d1tnna_          77 SEGK--QEAEFTLTI   89 (91)
T ss_dssp             SSCB--CCEEEEEEC
T ss_pred             CCCE--EEEEEEEEE
Confidence            7443  445555554

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.5e-12  Score=84.33  Aligned_cols=81  Identities=25%  Similarity=0.382  Sum_probs=61.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      .+....+.+|+++.|.|.+.+.+|  .+.+.|++++..+..    . +.......|.|.++..+|+|.|+|.| .|..+ 
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p--~~~v~W~k~~~~~~~----~-~~~~~~~~L~i~~v~~~d~G~Y~C~a-~N~~G-   78 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSP--AYTLVWTRLHNGKLP----S-RAMDFNGILTIRNVQPSDAGTYVCTG-SNMFA-   78 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSS--CCEEEEEEGGGBCCC----T-TEEEETTEEEECSCCGGGCEEEEEEE-ECSSC-
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCC--CCEEEEecCCceeec----c-ccEeeceEEEEecCCcccCEEEEEEE-EECCC-
Confidence            566677889999999999985443  689999999877754    2 23344568999999999999999999 78743 


Q ss_pred             CCCceeeeeEE
Q psy15235        193 TTPLAQADFDV  203 (323)
Q Consensus       193 ~~~~~~~~l~v  203 (323)
                       .....+.|.|
T Consensus        79 -~~~~~~~l~V   88 (89)
T d1gl4b_          79 -MDQGTATLHV   88 (89)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -EEEEEEEEEE
Confidence             3444445544

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.39  E-value=6.7e-13  Score=85.45  Aligned_cols=79  Identities=18%  Similarity=0.252  Sum_probs=58.8

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCC
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT  194 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  194 (323)
                      ....+.+|++++|.|.+.+.+|  .+.+.|||+|..+..    .    ..+..|.|.++..+|+|.|.|.| .|..+. .
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p--~~~~~W~k~g~~~~~----~----~~~~~l~i~~v~~~dsG~Y~C~a-~n~~g~-~   75 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKP--LVKVTFFQNGKSKKF----S----RSDPNFSIPQANHSHSGDYHCTG-NIGYTL-Y   75 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCC--CEEEEEEETTEEEEE----E----SSCCEEEETTCCGGGCEEEEEEE-EETTEE-E
T ss_pred             CCCeEecCCeEEEEEEecCCCC--CcEEEEEeecccccc----c----ccccccccCccCHHHCCeEEEEE-EeCCCC-E
Confidence            3455778999999999976554  679999999988754    1    23567999999999999999999 665322 2


Q ss_pred             CceeeeeEEEe
Q psy15235        195 PLAQADFDVIM  205 (323)
Q Consensus       195 ~~~~~~l~v~~  205 (323)
                      .+..+.|+|..
T Consensus        76 ~S~~v~l~V~~   86 (88)
T d2fcba2          76 SSKPVTITVQA   86 (88)
T ss_dssp             ECCCEEEEECC
T ss_pred             EeeeEEEEEeC
Confidence            24455666654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=3.9e-13  Score=87.58  Aligned_cols=75  Identities=20%  Similarity=0.327  Sum_probs=60.2

Q ss_pred             eeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        109 NYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       109 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      .|...|....+.+|+.+.|.|.+.|.|   .+.+.|++++..+...  ...++. ..+..|.|.+++.+|+|.|+|.| .
T Consensus         3 ~F~~~P~~~~v~~G~~~~l~C~v~g~p---~p~v~W~~~~~~i~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~   76 (92)
T d1epfa2           3 MFKNAPTPQEFKEGEDAVIVCDVVSSL---PPTIIWKHKGRDVILK--KDVRFIVLSNNYLQIRGIKKTDEGTYRCEG-R   76 (92)
T ss_dssp             EEEECCSSEECCTTSCEEECCEEECSS---CCEEEEEETTEEGGGG--CCTTEEECTTSCEEETTCCGGGCEEEEEEE-E
T ss_pred             EEEEcCCCEEEeCCCcEEEEEEEeecC---CCeEEEEEcCcccccc--cceeeeeeeeeeEEECCCCHHhCEEEEEEE-E
Confidence            444567777889999999999999988   7899999999888661  122233 44567999999999999999999 6


Q ss_pred             CC
Q psy15235        188 PK  189 (323)
Q Consensus       188 ~~  189 (323)
                      |.
T Consensus        77 n~   78 (92)
T d1epfa2          77 IL   78 (92)
T ss_dssp             EG
T ss_pred             EC
Confidence            65

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.6e-13  Score=85.68  Aligned_cols=82  Identities=22%  Similarity=0.351  Sum_probs=62.9

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNT  193 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~  193 (323)
                      +....+.+|++++|.|.+.+.++  ...+.|||||..+..    .    .....|.|.+++.+|+|.|.|++ .+..+ .
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~--~~~~~w~k~g~~~~~----~----~~~~~l~i~~~~~~dsG~Y~C~a-~n~~~-~   74 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWD--VYKVIYYKDGEALKY----W----YENHNISITNATVEDSGTYYCTG-KVWQL-D   74 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCC--EEEEEEEETTEECCS----C----CCSSEEEESSCCGGGCEEEEEEE-EETTE-E
T ss_pred             CCcCeEeCCCEEEEEEEecCCCC--CeEEEEEEeeecccc----c----cccceEEEeeeeeecCcEEEEEE-EeCCC-C
Confidence            34455778999999999977654  679999999988754    1    23457999999999999999999 56532 2


Q ss_pred             CCceeeeeEEEecc
Q psy15235        194 TPLAQADFDVIMKP  207 (323)
Q Consensus       194 ~~~~~~~l~v~~~p  207 (323)
                      ..+..+.|+|..+|
T Consensus        75 ~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          75 YESEPLNITVIKAP   88 (89)
T ss_dssp             EECCCEEEEEECSC
T ss_pred             eEeeeEEEEEEeCC
Confidence            34667778887765

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.38  E-value=1.1e-12  Score=85.22  Aligned_cols=86  Identities=21%  Similarity=0.236  Sum_probs=64.1

Q ss_pred             eeeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEE
Q psy15235        107 TGNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       107 ~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      .|.+.. .|....+.+|+.++|.|.+.|.|   .+.|.|++++.....      +.......|.|.+++.+|+|.|+|.|
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P---~p~i~W~k~~~~~~~------~~~~~~~~L~I~~v~~~D~G~Y~C~a   74 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNP---VPQIKWRKLDGSQTS------KWLSSEPLLHIQNVDFEDEGTYECEA   74 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEES---CCEEEEEECCSCCSC------CCSBSSSEEEECSCCGGGCEEEEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEcc---CCEEEEEecccccce------EeeeeeeEEEeCCCCccCCEEEEEEE
Confidence            455555 46677788999999999999988   789999997654432      11234568999999999999999999


Q ss_pred             EcCCCCCCCCceeeeeEEE
Q psy15235        186 IDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       186 ~~~~~~~~~~~~~~~l~v~  204 (323)
                       .|..|  .....+.|.|.
T Consensus        75 -~N~~G--~~~~~~~l~V~   90 (91)
T d1cs6a3          75 -ENIKG--RDTYQGRIIIH   90 (91)
T ss_dssp             -EETTE--EEEEEEEEEEE
T ss_pred             -EECCC--EEEEEEEEEEE
Confidence             77743  34455555554

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.38  E-value=1.2e-12  Score=84.41  Aligned_cols=80  Identities=20%  Similarity=0.312  Sum_probs=58.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      .+....+.+|++++|.|.+.+.+|  .+++.|||||..+..        ......|.|.+++.+|+|.|.|.+ .|..+.
T Consensus         8 q~p~~~v~eG~~v~L~C~~~~~~p--~~~~~W~kng~~~~~--------~~~~~~l~I~~v~~~dsG~Y~C~a-~n~~~~   76 (89)
T d1fnla2           8 QAPRWVFKEEDPIHLRCHSWKNTA--LHKVTYLQNGKDRKY--------FHHNSDFHIPKATLKDSGSYFCRG-LVGSKN   76 (89)
T ss_dssp             ECSCSEEETTCCEEEEEEECTTCC--CEEEEEEETTEEEEE--------EEECCCEEESSCCGGGCEEEEEEE-EETTEE
T ss_pred             ECCCCeEccCCeEEEEEEecCCCC--CcEEEEEEcccccce--------eccccccEECccceeccceEEEEE-EeCCCC
Confidence            344456789999999999976654  679999999987754        123457899999999999999999 565322


Q ss_pred             CCCceeeeeEEE
Q psy15235        193 TTPLAQADFDVI  204 (323)
Q Consensus       193 ~~~~~~~~l~v~  204 (323)
                       ..+..+.|+|.
T Consensus        77 -~~S~~v~itV~   87 (89)
T d1fnla2          77 -VSSETVNITIT   87 (89)
T ss_dssp             -EECCCEEEEEE
T ss_pred             -eEEeeEEEEEE
Confidence             22345555554

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.6e-13  Score=88.57  Aligned_cols=84  Identities=19%  Similarity=0.196  Sum_probs=65.7

Q ss_pred             eeEEeeCCeEEEEEEEe-cCCCCcEEEEECCeeeecc---CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        214 TLTVIEGEKLRLECLVV-GSPPPTVEWRIGNDTYFRS---QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .....+|+.+.|.|.+. +.|.+.+.|++++..+...   ..++..        ...+|.|.+++.+|+|.|+|.|.|..
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~   82 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ--------HKEKLWFVPAKVEDSGHYYCVVRNSS   82 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE--------ETTEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec--------cCCEEEeccceecCCEEEEEEEECCC
Confidence            34567899999999984 6788999999988654321   122222        35789999999999999999999999


Q ss_pred             cCCCCCceeEEEEEEcceec
Q psy15235        290 TRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       290 g~~~~~~~~~~~l~v~~~~~  309 (323)
                      |.    ....+.|.|..+.+
T Consensus        83 g~----~~~~~~L~V~~~~p   98 (101)
T d1iray1          83 YC----LRIKISAKFVENEP   98 (101)
T ss_dssp             EE----EEEEEEEEEECCCT
T ss_pred             Ce----EEEEEEEEEEeCCC
Confidence            66    88889999977644

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.3e-12  Score=83.46  Aligned_cols=78  Identities=12%  Similarity=0.164  Sum_probs=59.2

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-EeceeEEEEeeeecCCCeeEEEEEEcCCCCCCC
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT  194 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  194 (323)
                      ...+..|+.+.|.|.+.+.|   .+.+.|++++..+..    .... ......|.|.++..+|+|.|+|.| .|..  +.
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p---~p~i~W~~~~~~~~~----~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a-~N~~--g~   79 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCE---SPFFSWRTQIDSPLN----GKVTNEGTTSTLTMNPVSFGNEHSYLCTA-TCES--RK   79 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCS---SCEEEEEETTCCCCS----SEEEEETTEEEEEESSCCGGGCSEEEEEE-EETT--EE
T ss_pred             cEEEECCCEEEEEEeccCCC---CceEEEEecCcccee----eeeeeecCCcEEEEecccccccceEEEEE-EeCC--CE
Confidence            34567899999999999988   789999998766543    2222 255678999999999999999999 6773  33


Q ss_pred             CceeeeeEE
Q psy15235        195 PLAQADFDV  203 (323)
Q Consensus       195 ~~~~~~l~v  203 (323)
                      .+.++.|.|
T Consensus        80 ~~~~~~v~V   88 (90)
T d1vcaa2          80 LEKGIQVEI   88 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            445555554

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-12  Score=84.57  Aligned_cols=72  Identities=26%  Similarity=0.388  Sum_probs=56.7

Q ss_pred             ceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCC-eeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQG-RIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+..+.+|+.+.|.|.+. .|.+.+.|++++..+..+.. ++.+..  ++  ...+|.|.++..+|+|.|+|.|.|..
T Consensus         8 ~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~   80 (90)
T d1x44a1           8 EDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRV--EG--KKHILIIEGATKADAAEYSVMTTGGQ   80 (90)
T ss_dssp             CCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEE--ET--TEEEEEEEEECTTTCSEEEEEETTEE
T ss_pred             CCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEE--eC--CccEEEECccccccCEEEEEEEecce
Confidence            467789999999999984 68889999999998765433 343331  11  35789999999999999999998754

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.36  E-value=4.2e-13  Score=89.69  Aligned_cols=72  Identities=22%  Similarity=0.377  Sum_probs=57.5

Q ss_pred             eeEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeecc-CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        214 TLTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRS-QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...+.+|+++.|.|.+ .|.|.+.+.|++++..+... ..+.....      ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        13 ~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          13 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ------TTGNLYIAKTEASDLGNYSCFATSHIDF   86 (105)
T ss_dssp             CEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECT------TTCCEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeec------CCCEEeecccccccCcEEEEEEEECCCC
Confidence            4678899999999998 78899999999998765432 22222221      3567999999999999999999999965

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.1e-13  Score=84.96  Aligned_cols=73  Identities=10%  Similarity=0.141  Sum_probs=57.9

Q ss_pred             EEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCce
Q psy15235        118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLA  197 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~  197 (323)
                      .+.+|++++|.|.+.|.|   .+.|.|++++..+..          ....|.|.++..+|+|.|+|.| .|..  +....
T Consensus        10 ~v~~G~~~~L~C~~~g~p---~P~i~W~~~~~~~~~----------~~~~l~i~~v~~~DsG~Y~C~a-~N~~--g~~~~   73 (84)
T d2nxyb2          10 HLLQGQSLTLTLESPPGS---SPSVQCRSPRGKNIQ----------GGKTLSVSQLELQDSGTWTCTV-LQNQ--KKVEF   73 (84)
T ss_dssp             CEETTCCEEEEEECCTTC---CCEEEEECTTCCEEE----------ESSEEEESSCCGGGCEEEEEEE-EETT--EEEEE
T ss_pred             EEECCCeEEEEEEeEcCC---chheEEEeeccccee----------eeeeeeeeecccccccEEEEEE-EeCC--CEEEE
Confidence            356899999999999998   799999998766543          4567999999999999999999 7773  34455


Q ss_pred             eeeeEEEec
Q psy15235        198 QADFDVIMK  206 (323)
Q Consensus       198 ~~~l~v~~~  206 (323)
                      .+.|.|...
T Consensus        74 ~~~v~V~~~   82 (84)
T d2nxyb2          74 KIDIVVLAF   82 (84)
T ss_dssp             EEEECEECC
T ss_pred             EEEEEEEec
Confidence            556665543

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.36  E-value=1.9e-12  Score=85.17  Aligned_cols=82  Identities=20%  Similarity=0.273  Sum_probs=61.9

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ....+..|+++.|.|.+.+.|   .+.+.|+++|..+....  ..++.    .....|.|.+++.+|+|.|+|.| .|..
T Consensus        11 ~~~~~~~G~~v~l~C~~~g~P---~~~v~W~k~g~~i~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~N~~   84 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYGSNP---MGYPNYFKNGKDVNGNP--EDRITRHNRTSGKRLLFKTTLPEDEGVYTCEV-DNGV   84 (97)
T ss_dssp             CSEEEETTSCEEEEEEEECSS---CCCCEEEETTEECCCCT--TSSEESCSSSTTSEEEESSCCGGGCEEEEEEE-CCSS
T ss_pred             CCEEEecCCeEEEEEEEEEec---CCEEEEEEeeeeccccc--eeeeeeeeecCCCEEEEEeccccccEEEEEEE-EECC
Confidence            445678899999999999988   78999999999886511  22222    34568999999999999999999 7875


Q ss_pred             CCCCCceeeeeEE
Q psy15235        191 TNTTPLAQADFDV  203 (323)
Q Consensus       191 ~~~~~~~~~~l~v  203 (323)
                      +.. ...++.|+|
T Consensus        85 G~~-~s~s~~L~V   96 (97)
T d1biha3          85 GKP-QKHSLKLTV   96 (97)
T ss_dssp             SSC-EEEEEEEEE
T ss_pred             CcE-EEEEEEEEE
Confidence            432 334556665

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.9e-12  Score=81.56  Aligned_cols=79  Identities=14%  Similarity=0.198  Sum_probs=57.9

Q ss_pred             CceeEEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      +....+..|+++.|.|.+. +.+   .+.|+|++++.++..     .+.......|.|.+++.+|+|.|+|.| .|.  .
T Consensus        10 ~~~~~~~~G~~~~l~C~~~~g~p---~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~A-sn~--~   78 (90)
T d1gsma1          10 EPVVAVALGASRQLTCRLACADR---GASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVG-SCG--G   78 (90)
T ss_dssp             CSEEEEETTCCEEEEEEECCSST---TCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEE-EET--T
T ss_pred             CCeEEEEeCCcEEEEEEecCCCC---ccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEE-EeC--C
Confidence            3445578999999999986 555   689999998766532     222355678999999999999999999 666  2


Q ss_pred             CCCceeeeeEE
Q psy15235        193 TTPLAQADFDV  203 (323)
Q Consensus       193 ~~~~~~~~l~v  203 (323)
                      +..+.++.|.|
T Consensus        79 g~~~~s~~l~V   89 (90)
T d1gsma1          79 RTFQHTVQLLV   89 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CcEEEEEEEEE
Confidence            33444555444

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.4e-12  Score=84.53  Aligned_cols=81  Identities=22%  Similarity=0.407  Sum_probs=63.5

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCCCCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT  194 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  194 (323)
                      ..+.+|++++|.|.+.+ +   .+.+.|+++|..+..    ..+..  .....|.|.+++.+|.|.|+|.| .|..+. .
T Consensus        13 ~~v~~g~~v~l~C~~~~-~---~~~v~W~~~~~~l~~----~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a-~N~~g~-~   82 (96)
T d1l6za2          13 TTVKELDSVTLTCLSND-I---GANIQWLFNSQSLQL----TERMTLSQNNSILRIDPIKREDAGEYQCEI-SNPVSV-R   82 (96)
T ss_dssp             SEECTTSCEEEEECCCC-S---SCEEEEEETTEECCC----CTTEEEETTTTEEEECSCCGGGCEEEEEEE-ESSSCC-E
T ss_pred             eEEeCCCeEEEEEccCC-C---CCCEEEEEeeeeccc----ccceeccCCceEEEEeccchhhceEEEEEE-EeCCCC-e
Confidence            44678999999998866 4   468999999998876    44443  45678999999999999999999 776433 2


Q ss_pred             CceeeeeEEEecc
Q psy15235        195 PLAQADFDVIMKP  207 (323)
Q Consensus       195 ~~~~~~l~v~~~p  207 (323)
                      .+..+.|+|.++|
T Consensus        83 ~S~~~~L~V~~~P   95 (96)
T d1l6za2          83 RSNSIKLDIIFDP   95 (96)
T ss_dssp             ECCCCEEEECCSC
T ss_pred             EEEeEEEEEEcCC
Confidence            3456788888776

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.32  E-value=3.9e-12  Score=81.26  Aligned_cols=80  Identities=20%  Similarity=0.389  Sum_probs=62.1

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      +.+.+.|....+.+|++++|.|.+.+.++  ...+.|++||..+..          ....|.|.++..+|+|.|+|.+ .
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~--~~~~~w~~~g~~~~~----------~~~~l~i~~v~~~dsG~Y~C~a-~   71 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPE--SDSIQWFHNGNLIPT----------HTQPSYRFKANNNDSGEYTCQT-G   71 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCC--TTCCEEEETTEECTT----------CCSSEEEEECCGGGCEEEEEEC-T
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccc--eeEEEeecccccccc----------cccceEEeeccccCCcEEEEEC-C
Confidence            34455666666778999999999988774  457899999988865          3557999999999999999999 6


Q ss_pred             CCCCCCCCceeeeeEEE
Q psy15235        188 PKSTNTTPLAQADFDVI  204 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~  204 (323)
                      +.    ..+..+.|+|.
T Consensus        72 ns----~~S~~v~l~V~   84 (85)
T d2fcba1          72 QT----SLSDPVHLTVL   84 (85)
T ss_dssp             TS----BCCCCEEEEEE
T ss_pred             CC----cccccEEEEEE
Confidence            65    34556666664

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=6e-12  Score=83.65  Aligned_cols=87  Identities=18%  Similarity=0.261  Sum_probs=60.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------cccccCcEEeceeEEEEeeeecCCCeeEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------ATELSGRLTQSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .+....+.+|++++|.|.+.+.+   .+.|.|++++.....        ......+....+.+|.|.++..+|+|.|+|.
T Consensus         7 ~~~~v~v~~G~~v~l~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~   83 (102)
T d1f97a1           7 AQSDVQVPENESIKLTCTYSGFS---SPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCM   83 (102)
T ss_dssp             SCSEEEEETTCCEEEECEEESCS---SEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEE
T ss_pred             cCCcEEEeCCCEEEEEEEcCCCC---CCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEE
Confidence            44455678899999999999988   789999986543222        1112233334456799999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEE
Q psy15235        185 LIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v  203 (323)
                      + .|..+.......++|.|
T Consensus        84 a-~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          84 V-SEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             E-EETTSSSEEEEEEEEEE
T ss_pred             E-EECCCCEEEEEEEEEEE
Confidence            9 77755544444444443

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.30  E-value=2.6e-12  Score=84.05  Aligned_cols=80  Identities=20%  Similarity=0.355  Sum_probs=61.1

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.+...|....+.+|+++.|.|.+.+.|+  +..+.|+++|..+... ............|.|.++..+|+|.|+|.| .
T Consensus         3 P~i~~~p~~~~v~~g~~~~l~C~~~g~p~--p~~v~W~~~g~~l~~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a-~   78 (94)
T d1biha1           3 PVLKDQPAEVLFRENNPTVLECIIEGNDQ--GVKYSWKKDGKSYNWQ-EHNAALRKDEGSLVFLRPQASDEGHYQCFA-E   78 (94)
T ss_dssp             CEECCCCSEEEEETTSCEEECCCEESCCS--SCEEEEEESSSBCCTT-TTTEEECTTSCCEEESSCCGGGCEEEEEEE-E
T ss_pred             CEEEecCCcEEEeCCCeEEEEEEecCCCC--eeEEEEEeeeeeeeee-cceeeecccceEEEEeccChhcCeEEEEEE-E
Confidence            44555677777899999999999999873  3479999999988651 111112245678999999999999999999 7


Q ss_pred             CCCC
Q psy15235        188 PKST  191 (323)
Q Consensus       188 ~~~~  191 (323)
                      |..|
T Consensus        79 N~~G   82 (94)
T d1biha1          79 TPAG   82 (94)
T ss_dssp             ETTE
T ss_pred             eCCC
Confidence            7744

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=7.5e-12  Score=82.28  Aligned_cols=85  Identities=20%  Similarity=0.431  Sum_probs=60.3

Q ss_pred             eCCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC-CeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEE
Q psy15235        112 IEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       112 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      +.|....+..|+++.|.|.+.+.|+  .+.|.|+++ +..+...   ..++.     .....|.|.+++.+|+|.|+|.|
T Consensus         5 i~P~~~~v~~G~~~~l~C~v~g~p~--~~~v~W~~~~g~~~~~~---~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   79 (97)
T d1epfa1           5 IVPSQGEISVGESKFFLCQVAGDAK--DKDISWFSPNGEKLSPN---QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   79 (97)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSC--CCEEEEECTTSCEECCB---SSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EECCCEEEccCCcEEEEEEEEeccC--CCEEEEEEeeeeeeeec---cccEEEEeecCcceEEEcccCchhhceEEEEEE
Confidence            3455566789999999999999874  469999994 4444331   22332     34578999999999999999999


Q ss_pred             EcCCCCCCCCceeeeeEE
Q psy15235        186 IDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       186 ~~~~~~~~~~~~~~~l~v  203 (323)
                       .|..+. ....++.|+|
T Consensus        80 -~N~~G~-~~~~tv~l~V   95 (97)
T d1epfa1          80 -TAEDGT-QSEATVNVKI   95 (97)
T ss_dssp             -EETTTE-EEEEEEEEEE
T ss_pred             -EeCCCc-EEEEEEEEEE
Confidence             676432 2344555555

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.5e-11  Score=82.82  Aligned_cols=91  Identities=14%  Similarity=0.210  Sum_probs=64.3

Q ss_pred             eeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----------eceeEEEEeeeecCCCe
Q psy15235        110 YDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----------QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       110 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~G  179 (323)
                      |...|....+..|++++|.|.+.+.|+...+.|.|++++...... ....++.          .....|.|.+++.+|+|
T Consensus         7 Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   85 (110)
T d2avga1           7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSS-KVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG   85 (110)
T ss_dssp             EEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTT-TCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE
T ss_pred             eEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecc-cCCceeEeeeeeEEecccCEEEEEEeccCHHHCc
Confidence            333667777889999999999999875434789999987543221 1111111          23567999999999999


Q ss_pred             eEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        180 QYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       180 ~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      .|+|.| .|..  +....++.|.|.
T Consensus        86 ~Y~C~a-~N~~--G~~~~~~~L~V~  107 (110)
T d2avga1          86 GYRCEV-STKD--KFDCSNFNLTVH  107 (110)
T ss_dssp             EEEEEE-EETT--EEEEEEEEEEEE
T ss_pred             EEEEEE-EECC--CeEEEEEEEEEE
Confidence            999999 7773  335666666665

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.3e-12  Score=81.67  Aligned_cols=80  Identities=18%  Similarity=0.334  Sum_probs=59.4

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.+.+.|....+.+|++++|.|.+.+.++  ...+.|++++..+..          ....|.|.+++.+|+|.|.|.+ .
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~--~~~~~~~~~~~~~~~----------~~~~l~i~~v~~~d~G~Y~C~a-~   68 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFE--VSSTKWFHNGSLSEE----------TNSSLNIVNAKFEDSGEYKCQH-Q   68 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC------CCEEEETTEECSC----------CSSEEEECSCCGGGCEEEEEEC-T
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeee--ecceeeeeeeeeeec----------ccceeEECCCChhhCCcEEEEe-c
Confidence            44555666666789999999999998874  336778899887765          4567999999999999999999 6


Q ss_pred             CCCCCCCCceeeeeEEE
Q psy15235        188 PKSTNTTPLAQADFDVI  204 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~  204 (323)
                      +.    ..+..+.|.|.
T Consensus        69 ~s----~~S~~v~l~V~   81 (82)
T d1f2qa1          69 QV----NESEPVYLEVF   81 (82)
T ss_dssp             TS----SCCCCEEEEEE
T ss_pred             CC----CCcccEEEEEE
Confidence            65    34555666654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.29  E-value=4.9e-12  Score=80.54  Aligned_cols=79  Identities=25%  Similarity=0.452  Sum_probs=59.6

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      +.+.+.|....+.+|++++|.|.+.+.++  ...+.|++++..+..          ....|.|.++..+|+|.|+|.+ .
T Consensus         6 pvi~~~P~~~~v~~G~~vtL~C~~~~~~~--~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~a-~   72 (84)
T d1fnla1           6 AVVFLEPQWYSVLEKDSVTLKCQGAYSPE--DNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQT-N   72 (84)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCCBTT--BCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEEC-S
T ss_pred             CEEEECCCCcEEeCCCeEEEEEEeccCCC--CeEEEEeeeceeeee----------cceeeEecCCcccCCEEEEEEc-c
Confidence            34455666667889999999999988774  346778899887765          4567999999999999999999 6


Q ss_pred             CCCCCCCCceeeeeEE
Q psy15235        188 PKSTNTTPLAQADFDV  203 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v  203 (323)
                      +.    ..+..+.|+|
T Consensus        73 ~s----~~S~~v~L~V   84 (84)
T d1fnla1          73 LS----TLSDPVQLEV   84 (84)
T ss_dssp             SS----CCCCCEEEEE
T ss_pred             CC----CccccEEEEC
Confidence            54    2344555543

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.2e-12  Score=86.37  Aligned_cols=87  Identities=18%  Similarity=0.271  Sum_probs=61.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccccc--------ccCcEEeceeEEEEeeeecCCCeeEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE--------LSGRLTQSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .+....+.+|++++|.|.+.+.|   .+.+.|++++..+.....        ...+.......|.|.+++.+|+|.|+|.
T Consensus        10 ~~~~v~v~~g~~v~L~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (105)
T d1nbqa1          10 SEPEVRIPENNPVKLSCAYSGFS---SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCM   86 (105)
T ss_dssp             SCSBCCEETTCCCEEECEEESCS---SEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEE
T ss_pred             CCCeEEEeCCCeEEEEEEeCCCC---CCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEE
Confidence            34445577899999999999988   789999997655433111        1222223346799999999999999999


Q ss_pred             EEcCCCCCCCCceeeeeEE
Q psy15235        185 LIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       185 ~~~~~~~~~~~~~~~~l~v  203 (323)
                      + .|..+.......+.|.|
T Consensus        87 a-~n~~G~~~~~~~v~v~V  104 (105)
T d1nbqa1          87 V-SEEGGNSYGEVKVKLIV  104 (105)
T ss_dssp             E-EETTSSCEECCEEECCE
T ss_pred             E-EECCCCEEEEEEEEEEE
Confidence            9 77755544444444443

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.8e-11  Score=79.12  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=59.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      +++...+..|+++.|.|.+. .|   .+.+.|++++.++.......-.+.  .....|.|.++..+|+|.|+|.| .|. 
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~-   79 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-ED---DANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMT-TGG-   79 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SS---SCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEE-TTE-
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CC---CceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEE-ecc-
Confidence            44556688999999999984 45   578999999998865221111122  45678999999999999999999 664 


Q ss_pred             CCCCCceeeeeEEE
Q psy15235        191 TNTTPLAQADFDVI  204 (323)
Q Consensus       191 ~~~~~~~~~~l~v~  204 (323)
                           ..+..|+|.
T Consensus        80 -----~~~a~l~V~   88 (90)
T d1x44a1          80 -----QSSAKLSVD   88 (90)
T ss_dssp             -----EEEEEEEEE
T ss_pred             -----eEEEEEEEE
Confidence                 345556654

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-11  Score=83.44  Aligned_cols=91  Identities=19%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE------E----eceeEEEEeeeecCCCeeEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL------T----QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~------~----~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .|+...+..|++++|.|.+.+.|+...+.|.|+|++...... ....++      .    .....|.|.+++.+|+|.|+
T Consensus         6 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           6 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLAS-KAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             CCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHH-HTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             CCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeecccccc-ccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            567777889999999999999874334799999987543210 001111      1    33457999999999999999


Q ss_pred             EEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        183 CRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       183 C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      |.| .|..+  ..+..+.|.|..++
T Consensus        85 C~a-~N~~G--~~~~~~~L~V~~~~  106 (113)
T d2dava1          85 CEV-TYKDK--FDSCSFDLEVHEST  106 (113)
T ss_dssp             EEE-ECSSC--EEEECCEEEEECCC
T ss_pred             EEE-EeCCC--EEEEEEEEEEEcCC
Confidence            999 77743  34566677776543

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.27  E-value=8.1e-13  Score=85.30  Aligned_cols=72  Identities=15%  Similarity=0.287  Sum_probs=58.4

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ..+..+.+|+++.|.|.+ +.|.|.+.|++||..+..+ .++.+..  ++  ....|.|.++..+|+|.|+|.|.|..
T Consensus         8 l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~-~~~~~~~--~~--~~~~L~I~~~~~~D~G~Y~c~a~n~~   79 (89)
T d1tiua_           8 LYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTAS-PDCEIIE--DG--KKHILILHNCQLGMTGEVSFQAANAK   79 (89)
T ss_dssp             CCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSS-SSCEEEE--CS--SCEEEECCSCCSCCCSEECCBCSSCB
T ss_pred             CcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccc-eeEEEEe--ec--eeEEEEEcCCChhcCEEEEEEECceE
Confidence            346778999999999998 5788999999999988654 4555542  22  35789999999999999999998765

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.5e-12  Score=82.41  Aligned_cols=93  Identities=15%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      +.+.+.+....+..|++++|.|.+.|..|....++.|++++..+..    ..... .....|.|.....+|+|.|+|+| 
T Consensus         5 ~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~----~~~~~~~~~s~l~i~~~~~dd~g~ytC~A-   79 (103)
T d1iama1           5 ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKR----EPAVGEPAEVTTTVLVRRDHHGAQFSCRT-   79 (103)
T ss_dssp             SEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE----EECCTTTEEEEEEEECCSSCSSCEEEEEE-
T ss_pred             CceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccc----cccccccceEEEEEeeehhHCCCEEEEEE-
Confidence            3445555556688899999999999865421347899999988865    21111 34567899999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEEEecc
Q psy15235        187 DPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      .|..+.  ......+.+..++
T Consensus        80 ~n~~g~--~~~~~~~~~s~p~   98 (103)
T d1iama1          80 ELDLRP--QGLELFENTSAPY   98 (103)
T ss_dssp             EEECGG--GTSCEEEEECCCE
T ss_pred             EeCCCC--ccCeEeeeEcCCC
Confidence            776433  3333444444433

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.26  E-value=2.3e-12  Score=86.67  Aligned_cols=79  Identities=24%  Similarity=0.391  Sum_probs=59.3

Q ss_pred             eEEeeCCeEEEEEEE-ecCCCCcEEEEECCeeeeccC------CeeeeecCCCCCCcceeEEEeecCcCCCe---EEEEE
Q psy15235        215 LTVIEGEKLRLECLV-VGSPPPTVEWRIGNDTYFRSQ------GRIKLSEHPEKGTANSVLQIDEATMADRG---NYYCH  284 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~------~~~~~~~~~~~~~~~~~L~i~~v~~~d~G---~y~C~  284 (323)
                      .++.+|+++.|.|.+ .|+|.|.+.|++++..+....      .++...       ...+|.|.+++.+|+|   .|+|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~gd~g~Y~C~   84 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG-------PDGNLYFTIVTKEDVSDIYKYVCT   84 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC-------TTSCEEEEEECGGGCCSSEEEEEE
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccc-------cccccEEeeeEeeccCCceEEEEE
Confidence            346789999999997 899999999999876654321      112222       3578999999999877   69999


Q ss_pred             EeecccCCCCCceeEEEEEE
Q psy15235        285 GNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |.|..|.    ....+.+.+
T Consensus        85 A~N~~g~----~~~~~~~~~  100 (111)
T d1biha2          85 AKNAAVD----EEVVLVEYE  100 (111)
T ss_dssp             EECTTCS----SCEEEEEEE
T ss_pred             EEeCCCC----ceEEEEEEE
Confidence            9999966    555554444

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.3e-12  Score=85.08  Aligned_cols=87  Identities=10%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCe-eEEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAG-QYSCRLI  186 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~  186 (323)
                      |.+...+....+.+|+.+.|.|.+.|.|   .+.++|++++..+....  ..........|.|.++..+|.| .|+|.| 
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~~~g~P---~p~v~W~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a-   76 (92)
T d2ifga1           3 PTLKVQVPNASVDVGDDVLLRCQVEGRG---LEQAGWILTELEQSATV--MKSGGLPSLGLTLANVTSDLNRKNVTCWA-   76 (92)
T ss_dssp             CEEEEECCSSCCBTTCCEEEEEEEECSS---CCCCCEEESCCCSSEEE--CCCCCSSEEEEEEESCCSTTTTCCEEECC-
T ss_pred             CEEEEeCCCEEEeCCCEEEEeeeccCCC---CcEEEEEECCceeeeee--eeeeeccceeEEEccccccccceEEEEEE-
Confidence            3444444445578899999999999988   78999999987765411  1111255678999999999999 799999 


Q ss_pred             cCCCCCCCCceeeeeE
Q psy15235        187 DPKSTNTTPLAQADFD  202 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~  202 (323)
                      .|..+.  ...++.|.
T Consensus        77 ~N~~G~--~~~s~~l~   90 (92)
T d2ifga1          77 ENDVGR--AEVSVQVN   90 (92)
T ss_dssp             EETTEE--CCEEECCC
T ss_pred             EcCCCE--EEEEEEEE
Confidence            787443  34444443

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.9e-11  Score=81.37  Aligned_cols=87  Identities=18%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCc-EE----eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGR-LT----QSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~----~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      .+....+..|+++.|.|.+.+.|+  .|.|.|+|++..+......... ..    .....|.|.++..+|+|.|+|.| .
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~--~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A-~   85 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCAN--RPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA-N   85 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSS--CCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE-E
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCC--CCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEE-E
Confidence            556667889999999999999873  4799999988765431111111 11    22446999999999999999999 6


Q ss_pred             CCCCCCCCceeeeeEE
Q psy15235        188 PKSTNTTPLAQADFDV  203 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v  203 (323)
                      |..+. ....++.|.|
T Consensus        86 N~~G~-~~s~~~~l~V  100 (104)
T d2aw2a1          86 FQSNL-IESHSTTLYV  100 (104)
T ss_dssp             ETTEE-EECCCEEEEE
T ss_pred             cCCCe-EEEEEEEEEE
Confidence            66332 1233445544

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.24  E-value=1.3e-11  Score=81.17  Aligned_cols=80  Identities=18%  Similarity=0.319  Sum_probs=60.4

Q ss_pred             eeeeeeCCceeEEecC---CcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEE
Q psy15235        107 TGNYDIEPKYKVFEYR---VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g---~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~  182 (323)
                      .|.+...|....+..|   ++++|.|.+.|.|   .+.+.|+++|..+...  ...++. .....|.|..+..+|+|.|+
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P---~p~v~W~~ng~~i~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~   78 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANP---PATYRWKMNGTELKMG--PDSRYRLVAGDLVISNPVKAKDAGSYQ   78 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEES---CCEEEEEETTEECCCS--TTSSEEEETTEEEEESCCHHHHCEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeC---CCEEEEEEeeeeccCC--CCceEEeeeeeEEEEecccccCCEEEE
Confidence            4566666766666555   7899999999988   7899999999988652  122333 44567888889999999999


Q ss_pred             EEEEcCCCCC
Q psy15235        183 CRLIDPKSTN  192 (323)
Q Consensus       183 C~~~~~~~~~  192 (323)
                      |.| .|..|.
T Consensus        79 C~a-~N~~G~   87 (97)
T d1cs6a1          79 CVA-TNARGT   87 (97)
T ss_dssp             EEE-EETTEE
T ss_pred             EEE-EECCCE
Confidence            999 777543

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.23  E-value=2.3e-11  Score=81.83  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=59.9

Q ss_pred             eeeee-CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccC---------cEE----eceeEEEEeee
Q psy15235        108 GNYDI-EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSG---------RLT----QSKDSITIRKT  173 (323)
Q Consensus       108 ~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~---------~~~----~~~~~l~i~~~  173 (323)
                      |.+.. .|....+..|+++.|.|.+.+.|   .+.|.|++++..........+         ...    .....|.|.++
T Consensus         5 P~i~~~~P~~~tv~~G~~v~l~C~v~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   81 (109)
T d2fdbp2           5 PILQAGLPANASTVVGGDVEFVCKVYSDA---QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV   81 (109)
T ss_dssp             CEECTTCSCCEEECTTCCEEEEEEEECSS---CCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSC
T ss_pred             CEEcCCCCCCEEEecCCcEEEEEEEEEcC---CCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCC
Confidence            44443 36667788999999999999988   789999997644321000000         000    33567999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      ..+|+|.|+|.| .|..+.  ...++.|.|
T Consensus        82 ~~~D~G~Y~C~a-~N~~G~--~~~~~~L~V  108 (109)
T d2fdbp2          82 TFEDAGEYTCLA-GNSIGI--SFHSAWLTV  108 (109)
T ss_dssp             CGGGCEEEEEEE-ECSSCE--EEEEEEEEE
T ss_pred             CHHHCeEEEEEE-EECCCE--EEEEEEEEE
Confidence            999999999999 777433  444555554

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.9e-12  Score=82.11  Aligned_cols=74  Identities=16%  Similarity=0.112  Sum_probs=56.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      .|....+.+|+.+.|.|.+.|.|   .++++|+|++..+..    .         +.+.+++.+|+|.|.|.| .|..+ 
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P---~P~v~W~k~g~~~~~----~---------~~~~~v~~~d~G~Y~C~A-~N~~G-   71 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNP---LPELKCLKDGTFPLP----I---------GESVTVTRDLEGTYLCRA-RSTQG-   71 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEES---CCEEEEEETTTEECC----T---------TSCEECCGGGCEEEEEEE-EETTE-
T ss_pred             CCccEEEeCCCEEEEEEEEeEcC---ccEEEEEEeecccee----e---------eeeeccccCCCCEEEEEE-EcCCC-
Confidence            34556788999999999999998   789999999887765    1         124467789999999999 77743 


Q ss_pred             CCCceeeeeEEEe
Q psy15235        193 TTPLAQADFDVIM  205 (323)
Q Consensus       193 ~~~~~~~~l~v~~  205 (323)
                       ..+..+.|.|..
T Consensus        72 -~~~~~~~l~V~~   83 (84)
T d2oz4a3          72 -EVTREVTVNVLS   83 (84)
T ss_dssp             -EEEEEEEEEEEC
T ss_pred             -EEEEEEEEEEEC
Confidence             345556666653

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.3e-11  Score=83.25  Aligned_cols=84  Identities=18%  Similarity=0.309  Sum_probs=60.0

Q ss_pred             EEecCCcEEEEEEee-cCCCCCCceEEEEECCeecccccccc------CcEE--eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        118 VFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELS------GRLT--QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~~------~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      .+..|++++|.|.+. +.+   .+.|+|++++..+.......      ....  .....|.|.+++.+|+|.|+|.| .|
T Consensus        13 ~v~~G~~v~L~C~~~~g~p---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a-~N   88 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSP---PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQA-QN   88 (110)
T ss_dssp             EEETTSCEEEEEECSCCBS---CCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEE-EC
T ss_pred             EEecCCeEEEEEEeecCCC---CCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEE-EE
Confidence            366899999999986 566   78999999998775421111      1111  34457999999999999999999 78


Q ss_pred             CCCCCCCceeeeeEEEe
Q psy15235        189 KSTNTTPLAQADFDVIM  205 (323)
Q Consensus       189 ~~~~~~~~~~~~l~v~~  205 (323)
                      ..+....+..+.|.|..
T Consensus        89 ~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          89 GYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SSSCCEECCCEEEEEES
T ss_pred             CCCcEEEEEEEEEEEEe
Confidence            86665555566666543

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7.7e-12  Score=82.53  Aligned_cols=88  Identities=19%  Similarity=0.277  Sum_probs=64.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKSTN  192 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~  192 (323)
                      .|...++.+|+.+.|.|.+....|  .+.|.|+|++..+........++......|.|.+++.+|+|.|+|.+ .|.  .
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~--~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~--~   82 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEH--KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVV-RNS--S   82 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGC--SSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEE-EET--T
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCC--CceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEE-ECC--C
Confidence            455567888999999998864433  78999999987655422334445455678999999999999999999 676  3


Q ss_pred             CCCceeeeeEEEe
Q psy15235        193 TTPLAQADFDVIM  205 (323)
Q Consensus       193 ~~~~~~~~l~v~~  205 (323)
                      +....++.|+|..
T Consensus        83 g~~~~~~~L~V~~   95 (101)
T d1iray1          83 YCLRIKISAKFVE   95 (101)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CeEEEEEEEEEEe
Confidence            3355566666654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.5e-11  Score=81.94  Aligned_cols=86  Identities=17%  Similarity=0.201  Sum_probs=59.8

Q ss_pred             eeEEeeCCeEEEEEEEec-CCC--CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        214 TLTVIEGEKLRLECLVVG-SPP--PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g-~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      ...+.+|+.++|.|.+.| +|.  +++.|++++..+...... ...  .......+.|.|.....+|.|.|+|.|.|..|
T Consensus        11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~-~~~--~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1          11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFG-KAA--PAPQEATATFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECC-SST--TCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccc-eEe--ecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence            346778999999999976 443  479999999988643211 111  11222456788888888888999999999996


Q ss_pred             CCCCCceeEEEEEEcc
Q psy15235        291 RNSQPNEAFVYVRVKG  306 (323)
Q Consensus       291 ~~~~~~~~~~~l~v~~  306 (323)
                      .    ....+.+.+..
T Consensus        88 ~----~~~~~~~~~s~   99 (106)
T d1zxqa1          88 S----RGGNIFHKHSA   99 (106)
T ss_dssp             G----GTCCEEEEECC
T ss_pred             C----CCCeeEecccC
Confidence            5    44455555543

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.3e-11  Score=79.23  Aligned_cols=91  Identities=21%  Similarity=0.284  Sum_probs=61.1

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--cccccCcEE----eceeEEEEeeee-cCCCee
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--ATELSGRLT----QSKDSITIRKTT-VDDAGQ  180 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~~~----~~~~~l~i~~~~-~~d~G~  180 (323)
                      |.+...+....+.+|+.++|.|.+.+.|+  ...+.|++++.....  ......++.    .....|.|.++. .+|+|.
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~v~g~P~--p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           3 PRVKAVKSSEHINEGETAMLVCKSESVPP--VTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             CCCEESCSEEEECTTSCEEEEEECCCSSC--CCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             ceEEEcCCcEEECcCCeEEEEEEEEecCC--eeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            34444566667889999999999999884  338999997643321  111233333    456689999998 579999


Q ss_pred             EEEEEEcCCCCCCCCceeeeeEE
Q psy15235        181 YSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       181 y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      |+|.| .|..+.  ....+.|.|
T Consensus        81 Y~C~A-~N~~G~--~~~~~~L~V  100 (101)
T d3b5ha1          81 YRCNG-TSSKGS--DQAIITLRV  100 (101)
T ss_dssp             EEEEE-EETTEE--EEEEEEEEE
T ss_pred             EEEEE-EECCCE--EEEEEEEEE
Confidence            99999 777433  344444443

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.9e-12  Score=83.42  Aligned_cols=82  Identities=12%  Similarity=0.282  Sum_probs=58.8

Q ss_pred             EEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccccccccC-----cE--EeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        118 VFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITEATELSG-----RL--TQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~~~~~~~-----~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+..|+.++|.|.+. +.|   .+.+.|++++..+........     ..  ......|.|.+++.+|+|.|+|.| .|.
T Consensus        13 ~v~~G~~v~l~C~~~~g~p---~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a-~N~   88 (104)
T d1nbqa2          13 SATIGNRAVLTCSEQDGSP---PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEA-RNG   88 (104)
T ss_dssp             EEETTSCEEECCCCCSCBS---CCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEE-ECS
T ss_pred             EEecCCcEEEEEEeecCCC---CCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEE-EEC
Confidence            467899999999985 566   789999999988755211111     11  133467899999999999999999 788


Q ss_pred             CCCCCCceeeeeEE
Q psy15235        190 STNTTPLAQADFDV  203 (323)
Q Consensus       190 ~~~~~~~~~~~l~v  203 (323)
                      .+....+..+.|+|
T Consensus        89 ~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          89 YGTPMTSNAVRMEA  102 (104)
T ss_dssp             SSCCEECCCBCCEE
T ss_pred             CCceEEEEEEEEEE
Confidence            65544455555554

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4e-11  Score=79.49  Aligned_cols=82  Identities=11%  Similarity=0.211  Sum_probs=59.3

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTP  195 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~  195 (323)
                      .+....|.|.+.|.|   .++|.|+++|..+..+....-+..     .....|.|.+++.+|+|.|+|.| .|..  +..
T Consensus        15 ~~~~~~i~~~v~G~P---~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a-~N~~--G~~   88 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNP---KPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIA-KNEY--GKD   88 (103)
T ss_dssp             CCCEEEEEEEEECSS---CCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEE-ECSS--CEE
T ss_pred             cceeEEEEEEEEEeC---CCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEE-eccC--CEE
Confidence            466678999999998   789999999999876211111111     23457999999999999999999 7873  334


Q ss_pred             ceeeeeEEEecce
Q psy15235        196 LAQADFDVIMKPT  208 (323)
Q Consensus       196 ~~~~~l~v~~~p~  208 (323)
                      +..+.|.|..+|.
T Consensus        89 ~~~~~v~V~~~P~  101 (103)
T d1wwbx_          89 EKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEECCSCCCC
T ss_pred             EEEEEEEEEeCCC
Confidence            5566666665654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=8.7e-11  Score=76.42  Aligned_cols=65  Identities=17%  Similarity=0.368  Sum_probs=51.5

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..+.+|+.+.|.|.+.+ +   .+.+.|+++|..+..+   ..++.    .....|.|.++..+|+|.|+|.| .|.
T Consensus        16 ~~v~~G~~v~l~c~v~~-p---~~~v~W~k~g~~i~~~---~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a-~n~   84 (94)
T d1pd6a_          16 YQVSKGHKIRLTVELAD-H---DAEVKWLKNGQEIQMS---GSKYIFESIGAKRTLTISQCSLADDAAYQCVV-GGE   84 (94)
T ss_dssp             EEEETTSCEEEEEECSS-S---SSCCEEEESSSEECCC---SSSSEEEEETTEEEEEECSCSSSSCEEEEEEE-TTE
T ss_pred             EEECcCCeEEEEEEECC-C---CceEEEEEcCccceee---eeeEeeeccCCeEEeecCCCCceecEEEEEEE-eeE
Confidence            34678999999999854 5   5789999999988652   12222    45678999999999999999999 654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.5e-11  Score=78.52  Aligned_cols=66  Identities=20%  Similarity=0.343  Sum_probs=52.7

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ..+.+|+++.|.|.+.+ +   .+.+.|+++|..+...   ..++. ..+..|.|.++..+|+|.|+|.| .|..
T Consensus         7 ~~~~~G~~~~l~C~~~g-~---~~~v~W~~~g~~l~~~---~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A-~n~~   73 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-N---LARVFWKFQNGVLKAE---SPKYGLMGRKNLLIFNLSEGDSGVYQCLS-EERV   73 (92)
T ss_dssp             EEEETTSCEEECCCCSC-T---TCEEEEEESSSBCCCC---SSSBCCTTTTCEEECSCCGGGCEEEEEEE-EEEC
T ss_pred             eeEeCCCEEEEEEEeec-c---CCceeeecCcccceee---eeeeecceeeEEEECCCCHHHCcEEEEEE-EEcC
Confidence            45789999999999988 4   4699999999887651   22333 44567999999999999999999 6653

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.4e-11  Score=83.25  Aligned_cols=84  Identities=18%  Similarity=0.309  Sum_probs=60.4

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecccc-------------------------ccccCcEE----ec
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEA-------------------------TELSGRLT----QS  164 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~-------------------------~~~~~~~~----~~  164 (323)
                      +....+..|++++|.|.+.|.|   .+.|.|++++..+...                         .....++.    ..
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P---~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   92 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDP---APTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKD   92 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBS---CCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETT
T ss_pred             CCCEEEEcCCeEEEEEEEEEec---CCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCC
Confidence            4455688899999999999988   7899999987655330                         00111221    34


Q ss_pred             eeEEEEeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        165 KDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       165 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      ...|.|.++..+|+|.|+|.| .|..|  .....+.|.|
T Consensus        93 ~~~L~I~~v~~~D~G~Y~C~a-~N~~G--~~~~~~~l~V  128 (130)
T d1gxea_          93 RSIFTVEGAEKEDEGVYTVTV-KNPVG--EDQVNLTVKV  128 (130)
T ss_dssp             EEEEECSCCCTTTCEEEEEEE-ECSSC--EEEEEEEEEE
T ss_pred             EEEEEECcCChhcCEEEEEEE-EECCC--EEEEEEEEEE
Confidence            567999999999999999999 78743  3455555554

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.8e-11  Score=78.46  Aligned_cols=79  Identities=14%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             CcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcCCCCCCCCcee
Q psy15235        123 VPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDPKSTNTTPLAQ  198 (323)
Q Consensus       123 ~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~  198 (323)
                      ....|.|.+.|.|   .++++|+++|..+...........    .....|.|.+++.+|+|.|+|.| .|..  +..+.+
T Consensus        18 ~~~~i~~~v~G~P---~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a-~N~~--G~~~~~   91 (105)
T d1wwca_          18 LEHCIEFVVRGNP---PPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA-KNPL--GTANQT   91 (105)
T ss_dssp             CEEEEEEEEECSS---CCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEE-EETT--EEEEEE
T ss_pred             EEEEEEEEEEEeC---CCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEE-EcCC--CEEEEE
Confidence            3455788999988   789999999998876211111111    33467999999999999999999 7773  334555


Q ss_pred             eeeEEEecc
Q psy15235        199 ADFDVIMKP  207 (323)
Q Consensus       199 ~~l~v~~~p  207 (323)
                      +.|.|..+|
T Consensus        92 ~~v~V~~~P  100 (105)
T d1wwca_          92 INGHFLKEP  100 (105)
T ss_dssp             EEECCSCCC
T ss_pred             EEEEEEeCC
Confidence            555555544

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.1e-11  Score=76.54  Aligned_cols=84  Identities=14%  Similarity=0.179  Sum_probs=56.6

Q ss_pred             eeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccC-CeeeeecCCCC----CCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQ-GRIKLSEHPEK----GTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      ......|++++|.|... .|.+.+.|++++..+.... ...........    ......|+|.+++.+|+|.|+|.|.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            35677899999999864 5778999999987753211 11111100000    013578999999999999999999887


Q ss_pred             ccCCCCCceeEEEEEE
Q psy15235        289 ATRNSQPNEAFVYVRV  304 (323)
Q Consensus       289 ~g~~~~~~~~~~~l~v  304 (323)
                      .+      +..+.|+|
T Consensus        83 ~~------t~~~~l~V   92 (93)
T d1ccza1          83 TD------TMKFFLYV   92 (93)
T ss_dssp             CS------CEEEEEEE
T ss_pred             Cc------EEEEEEEE
Confidence            63      34566655

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.3e-11  Score=78.47  Aligned_cols=66  Identities=17%  Similarity=0.253  Sum_probs=52.4

Q ss_pred             EEecCCcEEEEE------EeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        118 VFEYRVPFTLKC------NVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       118 ~~~~g~~v~l~C------~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .+..|....|.|      .+.+.+   .+.|.|++||.++..   .+.++......|.|.++..+|+|.|+|.| .|..
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p---~P~i~W~kdg~~l~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~   81 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNE---LPKLQWYKDCKPLLL---DNIHFSGVKDRLIVMNVAEKHRGNYTCHA-SYTY   81 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTB---CCCCEEEETTEECCC---CSSSEEEETTEEEESSCCGGGCEEEEEEE-EEEE
T ss_pred             EEecCCCEEEEcCCccccccCCCC---CCEEEEEECCccccC---CCcEEEecCCEEEEcccccccCcEEEEEE-EECc
Confidence            366799999999      456666   789999999999875   12334445568999999999999999999 6653

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.12  E-value=1.1e-11  Score=79.76  Aligned_cols=68  Identities=13%  Similarity=0.095  Sum_probs=55.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE----eceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT----QSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      ++....+.+|+++.|.|.+ +.|   .+.+.|++||..+..    +.++.    .....|.|.+++.+|+|.|+|.+ .|
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p---~~~v~W~k~g~~i~~----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a-~n   77 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEP---DVHGQWKLKGQPLTA----SPDCEIIEDGKKHILILHNCQLGMTGEVSFQA-AN   77 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSS---SCCCBCCSSSCCCCS----SSSCEEEECSSCEEEECCSCCSCCCSEECCBC-SS
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCC---CcEEEEEEeeeeccc----ceeEEEEeeceeEEEEEcCCChhcCEEEEEEE-Cc
Confidence            3455668899999999998 455   679999999999877    44443    55678999999999999999999 65


Q ss_pred             C
Q psy15235        189 K  189 (323)
Q Consensus       189 ~  189 (323)
                      .
T Consensus        78 ~   78 (89)
T d1tiua_          78 A   78 (89)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.11  E-value=2.6e-11  Score=80.79  Aligned_cols=69  Identities=20%  Similarity=0.286  Sum_probs=53.2

Q ss_pred             ceeEEecCCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccccCcE-E-eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        115 KYKVFEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATELSGRL-T-QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~-~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ....+.+|+.+.|.|.+ .+.|   .+.|.|++++..+....  ..+. . .....|.|.+++.+|+|.|+|.| .|.
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p---~~~v~W~k~g~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~N~   83 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYP---ALSYRWLLNEFPNFIPA--DGRRFVSQTTGNLYIAKTEASDLGNYSCFA-TSH   83 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEES---CCEEEEEESSTTCBCCC--CSSEEECTTTCCEEESSCCGGGCEEEEEEE-EEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCC---CCEEEEEEeeccccccc--cceeeeecCCCEEeecccccccCcEEEEEE-EEC
Confidence            34568899999999997 4556   68999999987664311  2222 2 45668999999999999999999 665

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.8e-11  Score=78.94  Aligned_cols=82  Identities=12%  Similarity=0.168  Sum_probs=57.2

Q ss_pred             cCCcEE---EEEEeecCCCCCCceEEEEECCeeccccccccCcEE-------eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        121 YRVPFT---LKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-------QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       121 ~g~~v~---l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .|....   |.|.+.|.|   .+.+.|+++|.++...........       .....|.|.++..+|+|.|+|.| .|..
T Consensus        11 ~g~~~~~~ci~~~v~G~P---~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A-~N~~   86 (107)
T d1he7a_          11 TAVEMHHWCIPFSVDGQP---APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA-ANPF   86 (107)
T ss_dssp             CCCCCCEEEEEEEECCSS---CCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEE-EETT
T ss_pred             CCeEEEEEEEEEEEEEec---CCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEE-EeCC
Confidence            344444   556899998   789999999999876211111111       23456999999999999999999 7874


Q ss_pred             CCCCCceeeeeEEEecce
Q psy15235        191 TNTTPLAQADFDVIMKPT  208 (323)
Q Consensus       191 ~~~~~~~~~~l~v~~~p~  208 (323)
                      |  .....+.|.|..+|.
T Consensus        87 G--~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          87 G--QASASIMAAFMDNPF  102 (107)
T ss_dssp             E--EEEEEEEECCCSCTT
T ss_pred             C--EEEEEEEEEEEcCCC
Confidence            3  356666677766664

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=4.8e-10  Score=73.22  Aligned_cols=82  Identities=18%  Similarity=0.197  Sum_probs=58.6

Q ss_pred             eEEeeCCeEEEEEEEe-cCCC-CcEEEEECCeeeecc---------CCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        215 LTVIEGEKLRLECLVV-GSPP-PTVEWRIGNDTYFRS---------QGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~-g~p~-~~~~W~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      .....|++++|.|... .... ..|.|++++..+...         ..+..+.       .+..|+|.+++.+|+|.|+|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~-------~ngSL~I~nl~~~DsG~Y~c   77 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL-------ANGDLKIKNLTRDDSGTYNV   77 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC-------TTSCEEESSCCGGGCEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEEC-------CCccEEEeCCCHHHCEEEEE
Confidence            4466799999999642 2222 369999988765321         1122222       35789999999999999999


Q ss_pred             EEeecccCCCCCceeEEEEEEc
Q psy15235        284 HGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       284 ~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      .+.+..|+  ......+.|+|.
T Consensus        78 ~v~~~~g~--~~~~~~~~L~V~   97 (98)
T d1hnga1          78 TVYSTNGT--RILNKALDLRIL   97 (98)
T ss_dssp             EEEETTCC--EEEEEEEEEEEE
T ss_pred             EEEeCCCC--EEEEEEEEEEEE
Confidence            99999976  234677888775

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.2e-10  Score=75.36  Aligned_cols=74  Identities=16%  Similarity=0.275  Sum_probs=51.1

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      ...+.+|+.++|.|.+.|..|...++|.|++++..+...........  .....|.+.....+|.|.|+|+| .|..
T Consensus        11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A-~n~~   86 (106)
T d1zxqa1          11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLA-VLDL   86 (106)
T ss_dssp             SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEE-EEEC
T ss_pred             CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEE-EecC
Confidence            34577899999999998853211568999999998865211111111  33456777777778888999999 6663

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.6e-09  Score=72.30  Aligned_cols=70  Identities=16%  Similarity=0.188  Sum_probs=52.6

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE--E----------eceeEEEEeeeecCCCe-eEEE
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL--T----------QSKDSITIRKTTVDDAG-QYSC  183 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~----------~~~~~l~i~~~~~~d~G-~y~C  183 (323)
                      ..+..|+++.|.|.+.+.|   .+.+.|+++|..+..........  .          .....|.|.+++.+|.| .|+|
T Consensus        12 i~v~~G~~v~l~C~v~g~P---~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C   88 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQL---SDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC   88 (107)
T ss_dssp             EECCTTCCEEEEEEEEECT---TCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEE
T ss_pred             EEEeCCCEEEEEEEeccCC---CCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEE
Confidence            3467799999999999998   78999999998875411110000  0          22457999999999999 5999


Q ss_pred             EEEcCCC
Q psy15235        184 RLIDPKS  190 (323)
Q Consensus       184 ~~~~~~~  190 (323)
                      .| .|..
T Consensus        89 ~A-~N~~   94 (107)
T d1iray3          89 FA-KNTH   94 (107)
T ss_dssp             EE-ECSS
T ss_pred             EE-EeCC
Confidence            99 7874

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.3e-10  Score=73.47  Aligned_cols=72  Identities=14%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEE--E-CCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWY--K-GNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~--~-~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      .+....+..|+++.|.|.+.+.|   .+.+.|+  + ++..+..  ....+..  .....|.|.++..+|+|.|+|.| .
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~p---~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~   80 (96)
T d2c9aa1           7 RIQNVEVNAGQFATFQCSAIGRT---VAGDRLWLQGIDVRDAPL--KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI-R   80 (96)
T ss_dssp             CCCCEEECSSSCEEEEEEEESCC---CSSCEEEEEETTBCCCCE--EEEEEEETTEEEEEEEECSCCGGGCSEEEEEE-E
T ss_pred             ccCCEEEeCCCEEEEEEEEeecC---CCcEEEEEeeeeeeeecC--CceeEEEeecCceEEEECCCCHHHCeEEEEEE-E
Confidence            45566788999999999999987   4544433  2 2333222  0011111  34567999999999999999999 6


Q ss_pred             CCC
Q psy15235        188 PKS  190 (323)
Q Consensus       188 ~~~  190 (323)
                      |..
T Consensus        81 N~~   83 (96)
T d2c9aa1          81 TEG   83 (96)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=4e-09  Score=72.57  Aligned_cols=90  Identities=21%  Similarity=0.389  Sum_probs=59.6

Q ss_pred             eEEeeCCeEEEEEEEecCC---CCcEEEEECCeeee-----c-----------cCCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        215 LTVIEGEKLRLECLVVGSP---PPTVEWRIGNDTYF-----R-----------SQGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p---~~~~~W~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      ..+..|++++|.|.+....   ...+.|++.+....     .           ...+..+.. ........+|+|.+++.
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLK-ESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEEC-TTGGGTEEEEEESSCCG
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEee-ccccCCeEEEEEEEEch
Confidence            5677899999999985432   23599998653210     0           011222211 00112357899999999


Q ss_pred             CCCeEEEEEEeecccCCCCCceeEEEEEEcceec
Q psy15235        276 ADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKSF  309 (323)
Q Consensus       276 ~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~~  309 (323)
                      +|+|.|+|.+.+..+.    .+..+.|.|.+++-
T Consensus        91 ~D~G~Y~C~v~~~~~~----~~~~v~L~V~~P~~  120 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQ----EEAAVELKVEDPFY  120 (126)
T ss_dssp             GGCEEEEEEEEETTEE----EEEEEEEEEECTTT
T ss_pred             hHCeEEEEEEEECCCE----EEEEEEEEEeCCCE
Confidence            9999999999998754    77888999987543

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.1e-09  Score=70.94  Aligned_cols=78  Identities=18%  Similarity=0.167  Sum_probs=55.0

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccc--------cccccCcEE--eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE--------ATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~--------~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .....|++|+|.|.... |   ...|.|++++..+..        ...+..+..  ..+.+|+|.+++.+|+|.|.|.+ 
T Consensus         5 v~~~~G~sVtl~c~~~~-p---~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~-   79 (93)
T d1ccza1           5 IYGVVYGNVTFHVPSNV-P---LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES-   79 (93)
T ss_dssp             EEEETTCCEEECCCCSS-C---CSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEEC-
T ss_pred             EEEEECCCEEEEecCCC-C---CcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEE-
Confidence            34668999999997643 4   578999998876532        112223333  34678999999999999999999 


Q ss_pred             cCCCCCCCCceeeeeEE
Q psy15235        187 DPKSTNTTPLAQADFDV  203 (323)
Q Consensus       187 ~~~~~~~~~~~~~~l~v  203 (323)
                      .+.    ..+..+.|.|
T Consensus        80 ~n~----~~t~~~~l~V   92 (93)
T d1ccza1          80 PNI----TDTMKFFLYV   92 (93)
T ss_dssp             TTC----CSCEEEEEEE
T ss_pred             ECC----CcEEEEEEEE
Confidence            665    2344555554

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.4e-09  Score=68.48  Aligned_cols=92  Identities=11%  Similarity=0.099  Sum_probs=64.6

Q ss_pred             ecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        205 MKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       205 ~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      .+|.+...+...+..|++|+|.|... .+...+.|++++.........      .........+.|.+++.+|+|.|.|.
T Consensus         3 PKPsLsa~P~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~------~~~~~~~a~F~i~~v~~~~~G~Y~C~   75 (95)
T d1olla1           3 PKPFIWAEPHFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPK------PPERINKVKFYIPDMNSRMAGQYSCI   75 (95)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCS------SCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeeCCCcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEc------cCCCccEEEEEEeeeecCCCceEEEE
Confidence            36777766677888999999999874 335679999988653211111      11111357899999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEEc
Q psy15235        285 GNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      ..+..+-  ...+..+.|.|.
T Consensus        76 y~~~~~~--S~~Sd~leL~VT   94 (95)
T d1olla1          76 YRVGELW--SEPSNLLDLVVT   94 (95)
T ss_dssp             EEETTEE--CCCCCCEEEEEE
T ss_pred             eCCCCCc--cCCCCCEEEEEe
Confidence            8887643  335566677665

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=4.8e-09  Score=72.16  Aligned_cols=91  Identities=19%  Similarity=0.273  Sum_probs=58.6

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeecc-----c--------cccccCcEE-------eceeEEEEeee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSIT-----E--------ATELSGRLT-------QSKDSITIRKT  173 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~-----~--------~~~~~~~~~-------~~~~~l~i~~~  173 (323)
                      .....+..|++++|.|.+..........+.|++.+....     .        ......+..       ..+.+|.|.++
T Consensus         9 ~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   88 (126)
T d1pkoa_           9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV   88 (126)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE
Confidence            334567789999999998643322256799998643210     0        111222222       33678999999


Q ss_pred             ecCCCeeEEEEEEcCCCCCCCCceeeeeEEEecc
Q psy15235        174 TVDDAGQYSCRLIDPKSTNTTPLAQADFDVIMKP  207 (323)
Q Consensus       174 ~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~p  207 (323)
                      +.+|+|.|.|.+ .+.  .......+.|.|..|+
T Consensus        89 ~~~D~G~Y~C~v-~~~--~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          89 RFSDEGGYTCFF-RDH--SYQEEAAVELKVEDPF  119 (126)
T ss_dssp             CGGGCEEEEEEE-EET--TEEEEEEEEEEEECTT
T ss_pred             chhHCeEEEEEE-EEC--CCEEEEEEEEEEeCCC
Confidence            999999999999 554  3345666777777654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=2.4e-09  Score=69.82  Aligned_cols=84  Identities=15%  Similarity=0.207  Sum_probs=56.3

Q ss_pred             EEecCCcEEEEEEee-cCCCCCCceEEEEECCeeccc------cccccCcEE-eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        118 VFEYRVPFTLKCNVT-SPPPGDDYQIVWYKGNKSITE------ATELSGRLT-QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~-~~~~~~~~~i~W~~~~~~~~~------~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ....|++|+|.|... ....  ...|.|++++..+..      ......+.. ..+.+|+|.+++.+|+|.|+|.+ .+.
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~--i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v-~~~   82 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDD--IDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTV-YST   82 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTT--EEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEE-EET
T ss_pred             EEecCCCEEEECCCCCCccc--hheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEE-EeC
Confidence            355799999999632 2221  458999998876642      111122333 45678999999999999999999 555


Q ss_pred             CCCCCCceeeeeEEE
Q psy15235        190 STNTTPLAQADFDVI  204 (323)
Q Consensus       190 ~~~~~~~~~~~l~v~  204 (323)
                      .+.......+.|.|.
T Consensus        83 ~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          83 NGTRILNKALDLRIL   97 (98)
T ss_dssp             TCCEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEEE
Confidence            444334556666654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.6e-10  Score=78.39  Aligned_cols=82  Identities=21%  Similarity=0.236  Sum_probs=58.4

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--------eceeEEEEeeeecCC-CeeEEEEEEc
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--------QSKDSITIRKTTVDD-AGQYSCRLID  187 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d-~G~y~C~~~~  187 (323)
                      ..+.+|+.+.|.|.+.+.+|  .+.+.|++++..+....  ..++.        .....|.|.++...| +|.|+|.| .
T Consensus        16 ~~~~~G~~~~l~C~v~~~~p--~~~v~W~~~~~~i~~~~--~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A-~   90 (115)
T d2crya1          16 QHALHGEKGQIKCFIRSTPP--PDRIAWSWKENVLESGT--SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTA-W   90 (115)
T ss_dssp             CCCCTTSCCCCCEEECCSSC--CSEEEEESSSCEECSEE--ETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEE-E
T ss_pred             EEEecCCEEEEEEEeecCCC--eeEEEEeeeeeeEeeee--eeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEE-E
Confidence            34668999999999998664  56899999998876521  12222        223569999999998 69999999 7


Q ss_pred             CCCCCCCCceeeeeEEEe
Q psy15235        188 PKSTNTTPLAQADFDVIM  205 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v~~  205 (323)
                      |..|  ..+..+.|.|..
T Consensus        91 N~~G--~~~~~~~L~V~~  106 (115)
T d2crya1          91 NSFG--SDTEIIRLKEQG  106 (115)
T ss_dssp             CSSC--EEEEEECCCCSC
T ss_pred             ECCC--eEEEEEEEEEEC
Confidence            8843  345555555543

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=2.6e-09  Score=70.83  Aligned_cols=65  Identities=23%  Similarity=0.318  Sum_probs=47.5

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeeccc---------------cccccCcEE-eceeEEEEeeeecCCCeeEE
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITE---------------ATELSGRLT-QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~---------------~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~  182 (323)
                      +.+|++|+|.|......   ...+.|+|+......               ...+.+|.. ..+.+|.|.+++.+|+|.|+
T Consensus        11 v~~G~~V~L~c~~~p~~---~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLA---LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT   87 (107)
T ss_dssp             CCTTCCEEEEEESCCTT---CSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred             ccCCCCEEEEecCCCCC---ceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEE
Confidence            55899999999744333   568999985432111               223345655 56779999999999999999


Q ss_pred             EEEE
Q psy15235        183 CRLI  186 (323)
Q Consensus       183 C~~~  186 (323)
                      |.+.
T Consensus        88 c~v~   91 (107)
T d1l6za1          88 LDMT   91 (107)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9994

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.81  E-value=2e-09  Score=71.96  Aligned_cols=68  Identities=21%  Similarity=0.377  Sum_probs=50.8

Q ss_pred             EecCCcEEEEEEe-ecCCCCCCceEEEEECCeeccccccc---cCcEE-eceeEEEEeeeecCCCe---eEEEEEEcCCC
Q psy15235        119 FEYRVPFTLKCNV-TSPPPGDDYQIVWYKGNKSITEATEL---SGRLT-QSKDSITIRKTTVDDAG---QYSCRLIDPKS  190 (323)
Q Consensus       119 ~~~g~~v~l~C~~-~~~~~~~~~~i~W~~~~~~~~~~~~~---~~~~~-~~~~~l~i~~~~~~d~G---~y~C~~~~~~~  190 (323)
                      +.+|+++.|.|.+ .|.|   .+.+.|+|++..+......   ..++. .....|.|.+++..|+|   .|.|.| .|..
T Consensus        14 ~~EG~~~~L~C~v~~G~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A-~N~~   89 (111)
T d1biha2          14 PIEGRPFQLDCVLPNAYP---KPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTA-KNAA   89 (111)
T ss_dssp             CBTTEEEEECCCCCEEES---CCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEE-ECTT
T ss_pred             ccCCCeEEEEEEcccCCC---CCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEE-EeCC
Confidence            5679999999997 7888   7899999987665431111   12222 45678999999998877   699999 7874

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=6.4e-09  Score=67.93  Aligned_cols=93  Identities=14%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             ecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        205 MKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       205 ~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      .+|.+...+...+..|++++|.|... .+...+.|++++...........    .........+.|.+++.+|+|.|.|.
T Consensus         6 pkPsLsa~P~~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~----~~~~~~~a~F~l~~vt~~~~G~Y~C~   80 (99)
T d1ucta1           6 PMPFISAKSSPVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRL----KFWNETDPEFVIDHMDANKAGRYQCQ   80 (99)
T ss_dssp             CCCCEEESSCSEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEEC----C----CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCCEEEecCCCceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccc----cCCCCceEEEEecCCCHHHCceEEEE
Confidence            36777766667788999999999875 34567999987643221111110    01111356799999999999999999


Q ss_pred             EeecccCCCCCceeEEEEEE
Q psy15235        285 GNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v  304 (323)
                      ..+..+-  ...+..+.|.|
T Consensus        81 y~~~~~~--S~~Sdpl~L~V   98 (99)
T d1ucta1          81 YRIGHYR--FRYSDTLELVV   98 (99)
T ss_dssp             EEETTTE--EEECCCEEEEE
T ss_pred             EECCCcc--cCCCCCEEEEe
Confidence            9887642  22345555554

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.8e-08  Score=65.38  Aligned_cols=98  Identities=11%  Similarity=0.087  Sum_probs=58.7

Q ss_pred             ceeeeeceeEEeeCCeEEEEEEEe-cCCCC--cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        207 PTAKLVETLTVIEGEKLRLECLVV-GSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       207 p~~~~~~~~~~~~g~~~~l~C~~~-g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      |.|..+.  .+.+|+.++|.|.+. ++|.+  .+.|++++..+........ ..........+.|++.....++...|+|
T Consensus         5 P~I~~~~--~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~-~~~~~~~~~~s~l~~~~~~~D~g~~ltC   81 (109)
T d1vcaa1           5 PEIHLSG--PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED-ADRKSLETKSLEVTFTPVIEDIGKVLVC   81 (109)
T ss_dssp             CEEEESS--CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC-CSSCCCEEEEEEEEECCCGGGTTCEEEE
T ss_pred             CEEecCC--CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccc-cccCCcceeeEEEEccCChHHCCcEEEE
Confidence            4444332  467999999999995 46754  5899999987753211110 1001111234667777555555568999


Q ss_pred             EEeecccCCCCC---ceeEEEEEEcce
Q psy15235        284 HGNNVATRNSQP---NEAFVYVRVKGK  307 (323)
Q Consensus       284 ~a~n~~g~~~~~---~~~~~~l~v~~~  307 (323)
                      .|.|..+.....   ......|.|...
T Consensus        82 ~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          82 RAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             EEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             EEEcCcCCccccccccceeEEeEEEeC
Confidence            999987552111   234455666544

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=1.6e-08  Score=66.87  Aligned_cols=78  Identities=26%  Similarity=0.253  Sum_probs=52.8

Q ss_pred             EeeCCeEEEEEEEecCCCCcEEEEECCeeeec------------------cCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        217 VIEGEKLRLECLVVGSPPPTVEWRIGNDTYFR------------------SQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      +.+|+++.|.|.........+.|++.......                  -.+|..+.       .+..|.|.+++.+|+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~-------~ngSL~I~~v~~~D~   83 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-------SNGSLLFQMITMKDM   83 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC-------TTSCEEECSCCGGGC
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc-------ccccEEEcCCCchhC
Confidence            56899999999753333457999985432110                  01233333       467899999999999


Q ss_pred             eEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        279 GNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       279 G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |.|+|.+.+..+.   .....+.|.|
T Consensus        84 G~Y~c~v~~~~~~---~~~~~v~L~V  106 (107)
T d1l6za1          84 GVYTLDMTDENYR---RTQATVRFHV  106 (107)
T ss_dssp             EEEEEEEEETTEE---ECCCCEEECC
T ss_pred             EEEEEEEEECCCC---EEEEEEEEEE
Confidence            9999999887643   2445556554

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2e-08  Score=65.35  Aligned_cols=74  Identities=16%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEECCeee--ecc-----------CCeeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIGNDTY--FRS-----------QGRIKLSEHPEKGTANSVLQIDEATMADRGNY  281 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y  281 (323)
                      ....+|++++|.|.........+.|++.....  ...           .+++...... ......+|+|.+++.+|+|.|
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL-WDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGG-GGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEecc-CCCCEEEEEECCCChHHCEEE
Confidence            44678999999999876666689999854321  110           1111111000 011246799999999999999


Q ss_pred             EEEEeecc
Q psy15235        282 YCHGNNVA  289 (323)
Q Consensus       282 ~C~a~n~~  289 (323)
                      .|.+.+..
T Consensus        83 ~C~v~~~~   90 (97)
T d2nxyb1          83 ICEVEDQK   90 (97)
T ss_dssp             EEEETTEE
T ss_pred             EEEEecCC
Confidence            99997643

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.4e-08  Score=64.21  Aligned_cols=68  Identities=18%  Similarity=0.374  Sum_probs=47.9

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEECCeec--cc--------cccccCcEE-------eceeEEEEeeeecCCCe
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSI--TE--------ATELSGRLT-------QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~--~~--------~~~~~~~~~-------~~~~~l~i~~~~~~d~G  179 (323)
                      ....+|++|+|.|......   ...+.|++.....  ..        .....+++.       ..+.+|.|.+++.+|+|
T Consensus         4 V~~~~G~svtL~C~~s~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG   80 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD   80 (97)
T ss_dssp             EEEETTSCEEECCBCSSSS---CCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCE
T ss_pred             EEEEcCCcEEEEEEEecCC---CceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCE
Confidence            4567899999999887655   5689999854311  11        112233433       23567999999999999


Q ss_pred             eEEEEEEcC
Q psy15235        180 QYSCRLIDP  188 (323)
Q Consensus       180 ~y~C~~~~~  188 (323)
                      .|.|.+ .+
T Consensus        81 ~Y~C~v-~~   88 (97)
T d2nxyb1          81 TYICEV-ED   88 (97)
T ss_dssp             EEEEEE-TT
T ss_pred             EEEEEE-ec
Confidence            999999 44

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=8e-08  Score=61.82  Aligned_cols=89  Identities=17%  Similarity=0.108  Sum_probs=57.3

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEEc
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLID  187 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~  187 (323)
                      |.+...|.. ++..|+.|+|.|.....    ...+.|+|+|............ ......+.|.+++..|+|.|+|.. .
T Consensus         5 PsLsa~P~~-~V~~G~~VTL~C~~~~~----~~~f~L~k~g~~~~~~~~~~~~-~~~~a~F~i~~v~~~~~G~Y~C~y-~   77 (95)
T d1olla1           5 PFIWAEPHF-MVPKEKQVTICCQGNYG----AVEYQLHFEGSLFAVDRPKPPE-RINKVKFYIPDMNSRMAGQYSCIY-R   77 (95)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTT----CCEEEEEETTEEEEEECCSSCT-TCCEEEEEESSCCGGGCEEEEEEE-E
T ss_pred             CEEEeeCCC-cccCCCcEEEEEecCCC----ccEEEEEECCCCcceeEEccCC-CccEEEEEEeeeecCCCceEEEEe-C
Confidence            444555544 35689999999987543    3689999998654320000000 134568999999999999999998 5


Q ss_pred             CCCCCCCCceeeeeEE
Q psy15235        188 PKSTNTTPLAQADFDV  203 (323)
Q Consensus       188 ~~~~~~~~~~~~~l~v  203 (323)
                      +.......+..+.|.|
T Consensus        78 ~~~~~S~~Sd~leL~V   93 (95)
T d1olla1          78 VGELWSEPSNLLDLVV   93 (95)
T ss_dssp             ETTEECCCCCCEEEEE
T ss_pred             CCCCccCCCCCEEEEE
Confidence            5433334455555555

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=2.1e-07  Score=62.85  Aligned_cols=91  Identities=18%  Similarity=0.248  Sum_probs=55.4

Q ss_pred             eeceeEEeeCCeEEEEEEEecC----CCCcEEEEECC--ee----ee-c--------c----CCeeeeecCCCCCCccee
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS----PPPTVEWRIGN--DT----YF-R--------S----QGRIKLSEHPEKGTANSV  267 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~----p~~~~~W~~~~--~~----~~-~--------~----~~~~~~~~~~~~~~~~~~  267 (323)
                      .+....+..|++++|.|.....    ....+.|++..  ..    +. .        .    .+|+.+...  .......
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~s   82 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGD--PSWKDGS   82 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCB--GGGTBCC
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEE--CCCCEEE
Confidence            3455678889999999997432    23369998721  11    10 0        0    122222211  1113467


Q ss_pred             EEEeecCcCCCeEEEEEEeecccCCCCCceeEEEEEEc
Q psy15235        268 LQIDEATMADRGNYYCHGNNVATRNSQPNEAFVYVRVK  305 (323)
Q Consensus       268 L~i~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~  305 (323)
                      |+|.+++.+|+|.|.|.+.+..+.  ......+.|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~~--~~~~~~v~L~V~  118 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPDI--VGKTSQVTLYVF  118 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC------CCEEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEECCCc--CceEEEEEEEEE
Confidence            999999999999999999986544  345566777774

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1e-07  Score=64.18  Aligned_cols=92  Identities=20%  Similarity=0.292  Sum_probs=58.0

Q ss_pred             eeceeEEeeCCeEEEEEEEecC---CCCcEEEEECCee-----ee--------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS---PPPTVEWRIGNDT-----YF--------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      .|....+.+|++++|.|.....   ....+.|++....     +.        ...++..+.....  .....|+|.+++
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~sL~I~~l~   82 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPE--NGTFVVNIAQLS   82 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETT--TTEEEEEECSCC
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCC--CCEEEEEEhhhC
Confidence            3456778899999999987432   2235789874311     10        1122333321121  235789999999


Q ss_pred             cCCCeEEEEEEeecccCCCCCceeEEEEEEccee
Q psy15235        275 MADRGNYYCHGNNVATRNSQPNEAFVYVRVKGKS  308 (323)
Q Consensus       275 ~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v~~~~  308 (323)
                      .+|+|.|.|.+......    ....+.|.|.+..
T Consensus        83 ~~DsG~Y~C~v~~~~~~----~~~~v~L~V~~~~  112 (116)
T d1xeda_          83 QDDSGRYKCGLGINSRG----LSFDVSLEVLEHH  112 (116)
T ss_dssp             GGGCEEEEEEESCGGGC----CEEEEEEEEECCC
T ss_pred             cCCCEEEEEEEEcCCCC----ceEeEEEEEECCC
Confidence            99999999998765522    4556778776654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=7.1e-08  Score=64.06  Aligned_cols=88  Identities=23%  Similarity=0.304  Sum_probs=53.1

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeecccccccc--CcE--EeceeEEEEeeeecCCCeeEEEEEEcCCCCCCC
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS--GRL--TQSKDSITIRKTTVDDAGQYSCRLIDPKSTNTT  194 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~--~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~  194 (323)
                      +.+|+.++|.|.+.+..|...+.|.|++++..+.......  ...  ......|.+.....++...|+|+| .+......
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a-~~~~~~~~   91 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRA-KLHIDEMD   91 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEE-EECSCCCT
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEE-EcCcCCcc
Confidence            5689999999999886653234799999998775411100  000  123445666655555555899999 54432221


Q ss_pred             -----CceeeeeEEEecc
Q psy15235        195 -----PLAQADFDVIMKP  207 (323)
Q Consensus       195 -----~~~~~~l~v~~~p  207 (323)
                           ......|.|.+.|
T Consensus        92 ~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          92 SVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             TSCSEEEEEEECCEECCC
T ss_pred             ccccccceeEEeEEEeCC
Confidence                 2344556666554

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=8.6e-08  Score=61.18  Aligned_cols=91  Identities=20%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             ecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        205 MKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       205 ~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      .+|.+...+...+..|++++|.|... .+...+.|+|+|.....     .... .   .....+.|.+++.+|+|.|+|.
T Consensus         3 pkPsLsa~P~~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~-----~~~~-~---~~~a~F~i~~v~~~~~G~Y~C~   72 (93)
T d1olla2           3 DTPTLSVHPGPEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHV-----QRGY-G---KVQAEFPLGPVTTAHRGTYRCF   72 (93)
T ss_dssp             CCCEEEEESCSEEETTCEEEEEEECS-SSCSEEEEEEESSSCEE-----EEEE-C---SSEEEEEEEECCGGGCEEEEEE
T ss_pred             CCCEEEEeCCCcccCCCcEEEEECCC-CCCCEEEEEECCCccce-----eecC-C---CceeEEEecccChhcCceEEEE
Confidence            46778877778899999999999874 33567999998754221     1110 0   1367899999999999999997


Q ss_pred             EeecccCCCCCceeEEEEEEcc
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ....... ....+..+.|.|.+
T Consensus        73 ~~~~~~~-wS~~SdpLeL~VtG   93 (93)
T d1olla2          73 GSYNNHA-WSFPSEPVKLLVTG   93 (93)
T ss_dssp             CEEETTE-ECCCCCCEEEEEEC
T ss_pred             eECCCCC-cCCCCCCEEEEeeC
Confidence            5543211 13345666666653

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7.2e-08  Score=62.76  Aligned_cols=91  Identities=11%  Similarity=0.112  Sum_probs=55.1

Q ss_pred             eeeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccc-cccCcEEeceeEEEEeeeecCCCeeEEEEE
Q psy15235        107 TGNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEAT-ELSGRLTQSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       107 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      .|.+...|.. .+..|++|+|.|.....    ...+.|+++|....... ............+.|.+++..|+|.|.|..
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~~~----~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y   81 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAIRE----AYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQY   81 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCCTT----CSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCCCC----CcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEE
Confidence            3455555554 46789999999977543    46899999775322200 000111134567999999999999999998


Q ss_pred             EcCCCCCCCCceeeeeEE
Q psy15235        186 IDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       186 ~~~~~~~~~~~~~~~l~v  203 (323)
                       .+.......+..+.|.|
T Consensus        82 -~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          82 -RIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             -EETTTEEEECCCEEEEE
T ss_pred             -ECCCcccCCCCCEEEEe
Confidence             45432222344444433

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=4.6e-07  Score=60.44  Aligned_cols=77  Identities=18%  Similarity=0.294  Sum_probs=51.7

Q ss_pred             eeceeEEeeCCeEEEEEEEecC-CCCcEEEEEC--Ceeee------------ccCCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS-PPPTVEWRIG--NDTYF------------RSQGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      .|....+.+|++++|.|...+. ....+.||+.  +....            ....++.+....  ......|+|.+++.
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~--~~~~~~L~I~~~~~   82 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP--NRHDFHMNILDTRR   82 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECT--TSSEEEEEESSCCG
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeC--CCCEEEEEECccCc
Confidence            3456778899999999998544 3446899972  22110            122344444212  12357799999999


Q ss_pred             CCCeEEEEEEeecc
Q psy15235        276 ADRGNYYCHGNNVA  289 (323)
Q Consensus       276 ~d~G~y~C~a~n~~  289 (323)
                      +|+|.|.|.+....
T Consensus        83 ~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          83 NDSGIYLCGAISLH   96 (114)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             CCCeEEEEEEEeCC
Confidence            99999999987654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=1.5e-07  Score=63.60  Aligned_cols=90  Identities=21%  Similarity=0.275  Sum_probs=53.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCC-CCCceEEEEEC--Ce----ecc----------ccccccCcEE------eceeEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPP-GDDYQIVWYKG--NK----SIT----------EATELSGRLT------QSKDSIT  169 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~-~~~~~i~W~~~--~~----~~~----------~~~~~~~~~~------~~~~~l~  169 (323)
                      .|....+..|++++|.|......+ .....+.|++.  +.    .+.          ....+.+|+.      ....+|.
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence            455566888999999998754321 11458999872  11    110          0122344544      2346899


Q ss_pred             EeeeecCCCeeEEEEEEcCCCCCCCCceeeeeEE
Q psy15235        170 IRKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDV  203 (323)
Q Consensus       170 i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v  203 (323)
                      |.+++..|+|.|.|.+ .+..+.......+.|.|
T Consensus        85 I~~v~~~DsG~Y~C~v-~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          85 IHNLDYSDNGTFTCDV-KNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             ECSCCGGGCEEEEEEE-EC----CCEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEE-EECCCcCceEEEEEEEE
Confidence            9999999999999999 55432223333444444

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.1e-07  Score=64.84  Aligned_cols=86  Identities=19%  Similarity=0.320  Sum_probs=53.2

Q ss_pred             eeEEecCCcEEEEEEeecCCCC-CCceEEEEECCeecc-----------------ccccccCcEE-------eceeEEEE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYKGNKSIT-----------------EATELSGRLT-------QSKDSITI  170 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~~~~~-----------------~~~~~~~~~~-------~~~~~l~i  170 (323)
                      ...+.+|++++|.|.....+.. ....+.|++......                 ....+.+|..       .....|+|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            3457789999999998654321 145789987321100                 0122334443       23467999


Q ss_pred             eeeecCCCeeEEEEEEcCCCCCCCCceeeeeEEE
Q psy15235        171 RKTTVDDAGQYSCRLIDPKSTNTTPLAQADFDVI  204 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~  204 (323)
                      .+++.+|+|.|.|.+ .+..  ......+.|+|.
T Consensus        93 ~~v~~~D~G~Y~C~v-~~~~--~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKV-KKAP--GVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEE-EETT--EEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEE-EECC--CeEEeEEEEEEE
Confidence            999999999999999 5542  233444455543

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.8e-07  Score=60.36  Aligned_cols=72  Identities=18%  Similarity=0.281  Sum_probs=47.2

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Cee---c-c----ccccccCcEE------eceeEEEEeeeecCC
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKS---I-T----EATELSGRLT------QSKDSITIRKTTVDD  177 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~---~-~----~~~~~~~~~~------~~~~~l~i~~~~~~d  177 (323)
                      ++.....+|++|+|.|........ ...+.|||.  +..   + .    ......+++.      .....|.|.+++.+|
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~-~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~D   81 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSL-YEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREED   81 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTC-CCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCC-CCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCC
Confidence            445557789999999987543321 346789873  211   1 0    0122233433      345789999999999


Q ss_pred             CeeEEEEEE
Q psy15235        178 AGQYSCRLI  186 (323)
Q Consensus       178 ~G~y~C~~~  186 (323)
                      +|.|.|.+.
T Consensus        82 sG~Y~C~v~   90 (108)
T d1hkfa_          82 SGHYWCRIY   90 (108)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            999999993

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.1e-07  Score=61.25  Aligned_cols=94  Identities=15%  Similarity=0.097  Sum_probs=61.8

Q ss_pred             ecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        205 MKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       205 ~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      .+|.+...+...+..|++++|.|... .+...+.++++|...........      .......+.|.+++.+|+|.|+|.
T Consensus         3 PkP~Lsa~Ps~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~------~~~~~a~F~i~~v~~~~~G~Y~C~   75 (96)
T d1ugna1           3 PKPTLWAEPGSVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQ------ELVKKGQFPIPSITWEHTGRYRCY   75 (96)
T ss_dssp             CCCEEEEESCSEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCH------HHHTTTEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeECCCccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccC------CCCCEEEEEEEecCHHHCCeEEEE
Confidence            36777766777889999999999974 34557888888753211000000      001357899999999999999998


Q ss_pred             EeecccCCCCCceeEEEEEEcc
Q psy15235        285 GNNVATRNSQPNEAFVYVRVKG  306 (323)
Q Consensus       285 a~n~~g~~~~~~~~~~~l~v~~  306 (323)
                      ....... ....+..+.|.|.+
T Consensus        76 y~~~~~~-~S~~Sd~leL~VtG   96 (96)
T d1ugna1          76 YGSDTAG-RSESSDPLELVVTG   96 (96)
T ss_dssp             EEETTTE-ECCCCCCEEEEEEC
T ss_pred             EeCCCCC-ccccCCCEEEEEeC
Confidence            7643211 13455666666653

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=3.1e-07  Score=60.37  Aligned_cols=73  Identities=25%  Similarity=0.377  Sum_probs=49.5

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Cee---ee--------ccCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDT---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      .|+...+.+|++++|.|...+.....+.||+.  +..   +.        ....++....  .  .....|+|.+++.+|
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~--~--~~~~~L~I~~~~~~D   81 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--S--GTDFTLTIDPVEADD   81 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--E--TTEEEEEESSCCGGG
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeec--C--CCEEEeEECCcChhh
Confidence            44567788999999999997655567999973  211   11        1122333221  1  135789999999999


Q ss_pred             CeEEEEEEee
Q psy15235        278 RGNYYCHGNN  287 (323)
Q Consensus       278 ~G~y~C~a~n  287 (323)
                      +|.|.|.+..
T Consensus        82 sa~YyCa~~~   91 (106)
T d1lk3l1          82 TAIYFCQQSW   91 (106)
T ss_dssp             CEEEEEEECS
T ss_pred             CCCccccccc
Confidence            9999997653

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.6e-07  Score=63.96  Aligned_cols=85  Identities=19%  Similarity=0.404  Sum_probs=54.2

Q ss_pred             eEEeeCCeEEEEEEEecCCCC----cEEEEECCee--------eec------------cCCeeeeecCCCCCCcceeEEE
Q psy15235        215 LTVIEGEKLRLECLVVGSPPP----TVEWRIGNDT--------YFR------------SQGRIKLSEHPEKGTANSVLQI  270 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~----~~~W~~~~~~--------~~~------------~~~~~~~~~~~~~~~~~~~L~i  270 (323)
                      ..+.+|++++|.|.....+..    .+.|++....        +..            ..+|..+.. .........|+|
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~~~sL~I   92 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTS-NDLKSGDASINV   92 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECC-SCGGGTBCCEEE
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEc-cCCCCCEEEEEE
Confidence            567789999999998654322    4899873211        000            011222211 000113467999


Q ss_pred             eecCcCCCeEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        271 DEATMADRGNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       271 ~~v~~~d~G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      .+++.+|+|.|.|.+.+..|.    ....+.|.|
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~----~~~~~~L~V  122 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGV----ANKKIHLVV  122 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEE----EEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCe----EEeEEEEEE
Confidence            999999999999999988754    566666665

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=3.3e-07  Score=61.93  Aligned_cols=76  Identities=21%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------c-c-----------cccccCcEE-----
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------T-E-----------ATELSGRLT-----  162 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~-~-----------~~~~~~~~~-----  162 (323)
                      |.+...|....+.+|++++|.|.+.+..   ...+.||+  .|...      . .           ......++.     
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~---~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~   78 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSV---SQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDT   78 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCC---SSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEET
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCcc---CCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCC
Confidence            3455567777889999999999987766   56899997  22211      0 0           001112332     


Q ss_pred             eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        163 QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       163 ~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      .....|+|.+++.+|+|.|.|.+.
T Consensus        79 ~~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          79 NNKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEeEEEEcccccCCCEEEEeeEe
Confidence            234579999999999999999984

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.51  E-value=2.4e-07  Score=61.93  Aligned_cols=76  Identities=24%  Similarity=0.454  Sum_probs=53.1

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECC--ee---ee--------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGN--DT---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.....+...+.||+..  ..   +.        ....++....  .......+|+|.+++.+|+
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~sL~i~~~~~~Ds   84 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL--DADTKQSSLHITASQLSDS   84 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECB--CSSSSEEEEEECSCCGGGC
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceee--cCcccccccEEcccChhhC
Confidence            45677889999999999876666679999732  11   10        1122333331  1223578899999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+....
T Consensus        85 g~Y~Ca~~~~~   95 (114)
T d2cdea1          85 ASYICVVSDRG   95 (114)
T ss_dssp             SEEEEEEECSC
T ss_pred             cccceeeecCC
Confidence            99999998754

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.51  E-value=5.1e-07  Score=60.32  Aligned_cols=76  Identities=21%  Similarity=0.306  Sum_probs=50.8

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      +....+.+|++++|.|.........+.||+.  +..+.           ....++....  +.......|+|.+++.+|+
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATL--HKSSSSFHLQKSSAQLSDS   85 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECC--BGGGTBCCEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeec--cCCCCeEEeeccccccccC
Confidence            4456688999999999997666678999983  22111           0112222221  1112356799999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+....
T Consensus        86 g~YyCa~~~~~   96 (115)
T d1lp9e1          86 ALYYCALFLAS   96 (115)
T ss_dssp             EEEEEEEEECS
T ss_pred             ccceEEEEcCC
Confidence            99999887644

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.51  E-value=3.1e-07  Score=60.30  Aligned_cols=74  Identities=22%  Similarity=0.397  Sum_probs=50.0

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.........+.||+.  |....           ....++....  .  .....|+|.+++.+|+
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~--~--~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG--T--GTDFVFTIENTLSEDV   83 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--E--TTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC--C--CCeeeecccCCccccC
Confidence            4456788999999999986555557999972  32211           1122333221  1  1357899999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+.+..
T Consensus        84 a~YyCa~~~~~   94 (106)
T d1i8ka_          84 GDYYCLQSFNV   94 (106)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEeEecCccc
Confidence            99999876543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=4.1e-07  Score=59.81  Aligned_cols=74  Identities=15%  Similarity=0.268  Sum_probs=51.3

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|...+.....+.||+.  +....           ....++...  .  ......|+|.+++.+|+
T Consensus         8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~--~--~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGS--D--SGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--C--SSSSEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCcccccccee--c--CCCeEEeEEcccccccC
Confidence            4466788999999999986654557999982  21111           122344433  1  12468899999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+....
T Consensus        84 a~YyCa~~~~~   94 (107)
T d1ospl1          84 ATYFCQQYWSP   94 (107)
T ss_dssp             SEEEEEECSSS
T ss_pred             CcEEEeeccCC
Confidence            99999877544

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.48  E-value=2.1e-07  Score=60.22  Aligned_cols=80  Identities=19%  Similarity=0.253  Sum_probs=47.4

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNY  281 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y  281 (323)
                      +|.+.+.+...+..|+..+|.|.+.|+ |. ..++|++||..+........... ..++  ...+.|.+   ..++.+.|
T Consensus         3 pP~V~v~p~~~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~-~~dgtf~~~s~l~v---~~~~~~~y   78 (100)
T d1muja1           3 APQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFV-NRDYSFHKLSYLTF---IPSDDDIY   78 (100)
T ss_dssp             CCEEEEEESSCCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEE-CTTSCEEEEEEEEE---CCCTTCCE
T ss_pred             CCEEEEEcCCccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEE-CCCCCEEEEEEeEE---cCCCCCEE
Confidence            344443333345568899999999886 43 47999999987752111111110 1111  12344444   44567789


Q ss_pred             EEEEeecc
Q psy15235        282 YCHGNNVA  289 (323)
Q Consensus       282 ~C~a~n~~  289 (323)
                      +|.+.+..
T Consensus        79 tC~V~H~s   86 (100)
T d1muja1          79 DCKVEHWG   86 (100)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99999976

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.48  E-value=6.2e-07  Score=57.91  Aligned_cols=93  Identities=17%  Similarity=0.145  Sum_probs=59.2

Q ss_pred             ecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        205 MKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       205 ~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      .+|.+...++..+..|++|+|.|... .+...+.|+|+|.............      .......|..+...|+|.|+|.
T Consensus         5 pkPsLsa~P~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~------~~~~~f~~~~~~~~~~G~Y~C~   77 (99)
T d1nkra2           5 EKPSLSAQPGPTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKV------NGTFQADFPLGPATHGGTYRCF   77 (99)
T ss_dssp             CCCEEEEESCSEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEE------TTEEEEEEEEEECCSCEEEEEE
T ss_pred             CCCEEEEeCCCcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccC------CccEEEEEeccccccCEEEEEE
Confidence            46777777778889999999999875 3456799999885432111100000      0245678888889999999998


Q ss_pred             EeecccCC-CCCceeEEEEEE
Q psy15235        285 GNNVATRN-SQPNEAFVYVRV  304 (323)
Q Consensus       285 a~n~~g~~-~~~~~~~~~l~v  304 (323)
                      ........ ....+..+.|.|
T Consensus        78 y~~~~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          78 GSFHDSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             EEETTEEEEECCCCCCEEEEE
T ss_pred             eecCCCCCCccCCCCCEEEEE
Confidence            76543210 122345555554

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.47  E-value=7.1e-07  Score=59.35  Aligned_cols=77  Identities=21%  Similarity=0.340  Sum_probs=52.5

Q ss_pred             eeceeEEeeCCeEEEEEEEecC--CCCcEEEEEC--Ce---eeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS--PPPTVEWRIG--ND---TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      .|....+.+|++++|.|...+.  +...+.||+.  +.   .+.....++......  ......|+|.+++.+|+|.|.|
T Consensus         6 ~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~Dsa~YyC   83 (113)
T d1vesa_           6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNK--GSKSFSLRISDLRVEDSGTYKC   83 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEET--TTTEEEEEECSCCGGGCEEEEE
T ss_pred             eCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeEC--CCCceeeeecccccCCcceEee
Confidence            3456678899999999999653  3456999972  22   122233444443211  2235789999999999999999


Q ss_pred             EEeecc
Q psy15235        284 HGNNVA  289 (323)
Q Consensus       284 ~a~n~~  289 (323)
                      .+....
T Consensus        84 a~~~~~   89 (113)
T d1vesa_          84 QAFYSL   89 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeccC
Confidence            997654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.2e-07  Score=59.62  Aligned_cols=91  Identities=14%  Similarity=0.146  Sum_probs=60.5

Q ss_pred             ecceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        205 MKPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       205 ~~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      .+|.+...+...+..|++++|.|.........+.|+++|.....   .....      .....+.|.+++.+|+|+|+|.
T Consensus         4 PkP~Lsa~P~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~---~~~~~------~~~a~F~l~~v~~~~~G~Y~C~   74 (96)
T d1ucta2           4 GKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP---QHQSG------EHPANFSLGPVDLNVSGIYRCY   74 (96)
T ss_dssp             CCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC---SEEEC------SSSEEEECCSCCGGGCEEEEEE
T ss_pred             CCCEEEEeCCCccCCCCeEEEEEeCCCCCceEEEEEECCcccce---EEcCC------CcccEEEEeccccccCcEEEEE
Confidence            36777766677899999999999864333457999998854221   11111      1357799999999999999998


Q ss_pred             EeecccCC-CCCceeEEEEEE
Q psy15235        285 GNNVATRN-SQPNEAFVYVRV  304 (323)
Q Consensus       285 a~n~~g~~-~~~~~~~~~l~v  304 (323)
                      ........ ....+..+.|.|
T Consensus        75 y~~~~~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          75 GWYNRSPYLWSFPSNALELVV   95 (96)
T ss_dssp             EECTTSTTEECCCCCCEEEEE
T ss_pred             EEcCCCCCCccCCCCCEEEEE
Confidence            87543210 122445555554

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.7e-07  Score=59.73  Aligned_cols=82  Identities=21%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             ecceeeeeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEE
Q psy15235        205 MKPTAKLVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYY  282 (323)
Q Consensus       205 ~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~  282 (323)
                      .+|.+.+........|+.++|.|.+.|+ |.. .++|.+||..+..... ..... ..++ .......-.+..++.+.|+
T Consensus         4 ~~P~V~v~~~~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~-~~~~~-~~dg-ty~~~s~l~v~~~~~~~yt   80 (100)
T d1k5nb_           4 RTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH-SDLSF-SKDW-SFYLLYYTEFTPTEKDEYA   80 (100)
T ss_dssp             BCCEEEEEESSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEE-CCCEE-CTTS-CEEEEEEEEECCCSSCCEE
T ss_pred             CCCeeEEEcCCcccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccc-cceec-CCCC-cEEEEEEeEECCCCCCEEE
Confidence            3455544323334578899999999886 544 7999999988753211 11111 1111 1222222334455677899


Q ss_pred             EEEeecc
Q psy15235        283 CHGNNVA  289 (323)
Q Consensus       283 C~a~n~~  289 (323)
                      |.+.+..
T Consensus        81 C~V~H~s   87 (100)
T d1k5nb_          81 CRVNHVT   87 (100)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9999976

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.46  E-value=5.3e-07  Score=59.12  Aligned_cols=73  Identities=21%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEE--CCeeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRI--GNDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.........+.||+  .|....           ....++....    ......|+|.+++.+|+
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR----SGSDYSLTISSLESEDF   83 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc----cCCEEEEEEhhhcccCC
Confidence            446678899999999998766666799997  232211           1112222221    01357899999999999


Q ss_pred             eEEEEEEeec
Q psy15235        279 GNYYCHGNNV  288 (323)
Q Consensus       279 G~y~C~a~n~  288 (323)
                      |.|.|.+.+.
T Consensus        84 a~YyCa~~~~   93 (107)
T d1c5cl1          84 ADYYCLQYAS   93 (107)
T ss_dssp             SEEEEEECSS
T ss_pred             eEEEEecCcC
Confidence            9999987654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.46  E-value=2.9e-07  Score=61.41  Aligned_cols=77  Identities=26%  Similarity=0.411  Sum_probs=52.1

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|...+.....+.||+.  +..+.           ...+++....  ........|+|.+++.+|+
T Consensus         7 P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~Ds   84 (113)
T d2bnqd1           7 PAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASL--DKSSGRSTLYIAASQPGDS   84 (113)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEE--ETTTTEEEEEESSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeee--ccCCCEEEeeeecCCCCCC
Confidence            4566788999999999997665557999982  22111           0112222221  1122467899999999999


Q ss_pred             eEEEEEEeeccc
Q psy15235        279 GNYYCHGNNVAT  290 (323)
Q Consensus       279 G~y~C~a~n~~g  290 (323)
                      |.|.|.+....+
T Consensus        85 g~YyCa~~~~~~   96 (113)
T d2bnqd1          85 ATYLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEEEESSS
T ss_pred             cEEeEeEecCCC
Confidence            999999987653

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=6.2e-07  Score=59.26  Aligned_cols=88  Identities=16%  Similarity=0.309  Sum_probs=53.0

Q ss_pred             eeEEeeCCeEEEEEEEecC-C-CCcEEEEECC--ee---ee--------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        214 TLTVIEGEKLRLECLVVGS-P-PPTVEWRIGN--DT---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~--~~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      ...+.+|++++|.|..... . ...+.|++..  ..   +.        ...+++.+...+.  .....|+|.+++.+|+
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPD--AGFFTVTMTDLREEDS   82 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETT--TTEEEEEECSCCGGGC
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCC--CCEEEEEEhhhCCCCC
Confidence            3567789999999987433 2 2357898732  11   10        1123333332122  2468899999999999


Q ss_pred             eEEEEEEeecccCCCCCceeEEEEEE
Q psy15235        279 GNYYCHGNNVATRNSQPNEAFVYVRV  304 (323)
Q Consensus       279 G~y~C~a~n~~g~~~~~~~~~~~l~v  304 (323)
                      |.|.|.+...... .......+.|.|
T Consensus        83 G~Y~C~v~~~~~~-~~~~~~~~~l~V  107 (108)
T d1hkfa_          83 GHYWCRIYRPSDN-SVSKSVRFYLVV  107 (108)
T ss_dssp             EEEEEEEECTTTC-CEEEEEEEEEEE
T ss_pred             EEEEEEEecCCCC-cEEEeeEEEEEE
Confidence            9999998865432 112333444444

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.46  E-value=4.4e-07  Score=59.57  Aligned_cols=73  Identities=16%  Similarity=0.229  Sum_probs=49.6

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.........+.||+.  |....           ....++....    ......|+|.+++.+|+
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~----s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG----SGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE----ETTEEEEEECSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec----CCCEeeeEehhhcccCC
Confidence            4556788999999999986555557999983  11111           0112332221    11457899999999999


Q ss_pred             eEEEEEEeec
Q psy15235        279 GNYYCHGNNV  288 (323)
Q Consensus       279 G~y~C~a~n~  288 (323)
                      |.|.|.+.+.
T Consensus        83 A~YyCa~~~~   92 (106)
T d1a0ql1          83 ATYYCLQYYN   92 (106)
T ss_dssp             SEEEEEECSS
T ss_pred             EeEEEEEeCC
Confidence            9999987653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=6.4e-07  Score=58.92  Aligned_cols=74  Identities=23%  Similarity=0.344  Sum_probs=50.0

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECC--eeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGN--DTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.........+.||+..  ..+.           ....++....  .  .....|+|.+++.+|+
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~--~--~~~~~L~I~~~~~~Ds   83 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--S--GTDFTLSINSVETEDF   83 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--E--TTEEEEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc--c--CCEEEEEEcccCcCCC
Confidence            44667889999999999865545679999732  2111           1112333221  1  1457899999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+.+..
T Consensus        84 a~YyCa~~~~~   94 (107)
T d1j1pl_          84 GMYFCQQANSW   94 (107)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEEEEcCCCC
Confidence            99999776443

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.45  E-value=8.3e-07  Score=58.75  Aligned_cols=76  Identities=21%  Similarity=0.384  Sum_probs=51.6

Q ss_pred             eceeEEeeCCeEEEEEEEecC--CCCcEEEEEC--Ce---eeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        212 VETLTVIEGEKLRLECLVVGS--PPPTVEWRIG--ND---TYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      |....+.+|++++|.|...+.  ....+.||+.  |.   .+....+++.....  .......|+|.+++.+|+|.|.|.
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~--~~~~~~~L~I~~l~~~Dsa~YyCA   83 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVN--SGSKSFSLRINDLTVEDGGTYRCG   83 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEe--cCCceeeeEecCCcCccCEEEeEE
Confidence            445667889999999998543  3467999982  11   12223344443321  122357899999999999999998


Q ss_pred             Eeecc
Q psy15235        285 GNNVA  289 (323)
Q Consensus       285 a~n~~  289 (323)
                      +....
T Consensus        84 ~~~~~   88 (112)
T d1sq2n_          84 LGVAG   88 (112)
T ss_dssp             ECBTT
T ss_pred             EecCC
Confidence            87654

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.44  E-value=7.7e-07  Score=57.20  Aligned_cols=81  Identities=21%  Similarity=0.333  Sum_probs=48.6

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecC-C-CCcEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGS-P-PPTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYY  282 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~  282 (323)
                      +|.+.+........++.++|.|.+.|+ | ...++|++||..+.............++. ...+.|.+   ..++...|+
T Consensus         3 PP~V~v~~~~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~yt   79 (98)
T d1hdmb1           3 PPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTYT   79 (98)
T ss_dssp             CCEEEEEECCCCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCEE
T ss_pred             CCEEEEEcCCCccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEEE
Confidence            455554333345567889999999886 5 34799999998875332221111111111 12344544   455566899


Q ss_pred             EEEeecc
Q psy15235        283 CHGNNVA  289 (323)
Q Consensus       283 C~a~n~~  289 (323)
                      |.+.+..
T Consensus        80 C~V~H~s   86 (98)
T d1hdmb1          80 CVVEHIG   86 (98)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9999987

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.44  E-value=6.3e-07  Score=57.76  Aligned_cols=82  Identities=17%  Similarity=0.127  Sum_probs=44.7

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYC  283 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C  283 (323)
                      +|.+.+.+......++..+|.|.+.|+ |.. .++|++||..+........... ..++ ..+....-.+..++...|+|
T Consensus         4 ~P~V~l~~~~~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~-~~dg-tf~~~s~l~~~~~~~~~ytC   81 (98)
T d1d5mb1           4 YPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQ-NGDW-TFQTLVMLETVPRSGEVYTC   81 (98)
T ss_dssp             CCEEEEEEC--------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEE-CSSS-CEEEEEEEECCCCTTCEEEE
T ss_pred             CCEEEEECCCccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEe-CCCc-EEEEEEEeeEcCCCCCEEEE
Confidence            344443322334456778899999875 543 7999999988743211111110 1122 23344444566777889999


Q ss_pred             EEeecc
Q psy15235        284 HGNNVA  289 (323)
Q Consensus       284 ~a~n~~  289 (323)
                      .+.+..
T Consensus        82 ~V~H~s   87 (98)
T d1d5mb1          82 QVEHPS   87 (98)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            999987

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.6e-07  Score=57.71  Aligned_cols=69  Identities=13%  Similarity=0.200  Sum_probs=48.7

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      |.+.+.|. .++..|++|+|.|.....    ...+.|+|+|.....    ..........+.|.+++..|+|.|+|..
T Consensus         5 PsLsa~P~-~~V~~G~~VTL~C~~~~~----~~~f~L~Keg~~~~~----~~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           5 PTLSVHPG-PEVISGEKVTFYCRLDTA----TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CEEEEESC-SEEETTCEEEEEEECSSS----CSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CEEEEeCC-CcccCCCcEEEEECCCCC----CCEEEEEECCCccce----eecCCCceeEEEecccChhcCceEEEEe
Confidence            44444443 346789999999987553    468999998764432    1111134578999999999999999975

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.44  E-value=6.7e-07  Score=58.88  Aligned_cols=73  Identities=19%  Similarity=0.334  Sum_probs=49.8

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.........+.||+.  +....           ....++....    ......|+|.+++.+|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG----SATDFTLTISSVQADDD   83 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGC
T ss_pred             CCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec----cCCeeecEEHhheecCC
Confidence            4456788999999999987665567999973  21111           0122222221    12467899999999999


Q ss_pred             eEEEEEEeec
Q psy15235        279 GNYYCHGNNV  288 (323)
Q Consensus       279 G~y~C~a~n~  288 (323)
                      |.|.|.+...
T Consensus        84 a~YyCa~~~~   93 (107)
T d1kcvl1          84 ADYYCGQSYS   93 (107)
T ss_dssp             EEEEEEECSS
T ss_pred             ceEEEEecCC
Confidence            9999987643

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=6.6e-07  Score=60.42  Aligned_cols=78  Identities=19%  Similarity=0.412  Sum_probs=50.6

Q ss_pred             ceee-eeceeEEeeCCeEEEEEEEecCCCCcEEEEE--CCee------e-ec--cC------------CeeeeecCCCCC
Q psy15235        207 PTAK-LVETLTVIEGEKLRLECLVVGSPPPTVEWRI--GNDT------Y-FR--SQ------------GRIKLSEHPEKG  262 (323)
Q Consensus       207 p~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~------~-~~--~~------------~~~~~~~~~~~~  262 (323)
                      |.+. .|....+.+|++++|.|.+.+.....+.|++  .+..      + ..  ..            .++....   ..
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~---~~   78 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMR---DT   78 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEE---ET
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEEC---CC
Confidence            3344 4456678899999999999877777899997  1221      1 00  00            0111110   00


Q ss_pred             CcceeEEEeecCcCCCeEEEEEEee
Q psy15235        263 TANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       263 ~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      ....+|+|.+++.+|+|.|.|.+..
T Consensus        79 ~~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          79 NNKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEeEEEEcccccCCCEEEEeeEeC
Confidence            1236799999999999999998764

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=7.9e-07  Score=59.26  Aligned_cols=72  Identities=18%  Similarity=0.347  Sum_probs=49.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCe-e--ccc------cccccCcEE------eceeEEEEeeeec
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNK-S--ITE------ATELSGRLT------QSKDSITIRKTTV  175 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~-~--~~~------~~~~~~~~~------~~~~~l~i~~~~~  175 (323)
                      .|....+.+|++++|.|...+...  ...+.|||  .|. +  +..      ......++.      .....|.|.++++
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~--~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   82 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSE--DLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR   82 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCT--TCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG
T ss_pred             CCCeEEECCCCCEEEEEEECCCCC--cceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc
Confidence            566677889999999999865432  45789998  232 1  100      122344544      2346799999999


Q ss_pred             CCCeeEEEEEE
Q psy15235        176 DDAGQYSCRLI  186 (323)
Q Consensus       176 ~d~G~y~C~~~  186 (323)
                      +|+|.|.|.+.
T Consensus        83 ~Dsg~YyCa~~   93 (114)
T d3bp5a1          83 NDSGIYLCGAI   93 (114)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCCeEEEEEEE
Confidence            99999999983

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.41  E-value=5.3e-07  Score=58.39  Aligned_cols=80  Identities=16%  Similarity=0.220  Sum_probs=48.1

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNY  281 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y  281 (323)
                      +|.+.+.+......|+..+|.|.+.|+ |.. .++|.+||..+........... ..++  ...+.|.+..   ++...|
T Consensus         5 ~P~V~v~~~~~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~-~~dgty~~~S~L~v~~---~~~~~y   80 (101)
T d1fnga1           5 APEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLP-RDDHLFRKFHYLTFLP---STDDFY   80 (101)
T ss_dssp             CCEEEEEESSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEE-CSSSCEEEEEEEEECC---CTTCCE
T ss_pred             CCeEEEeCCCcccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEE-CCCCcEEEEEEeEEcC---CCCCEE
Confidence            455554333334567888999999876 544 7999999988753211111111 1111  2345565543   445579


Q ss_pred             EEEEeecc
Q psy15235        282 YCHGNNVA  289 (323)
Q Consensus       282 ~C~a~n~~  289 (323)
                      +|.+.+..
T Consensus        81 tC~V~H~s   88 (101)
T d1fnga1          81 DCEVDHWG   88 (101)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99999976

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=6.1e-07  Score=58.04  Aligned_cols=79  Identities=13%  Similarity=0.140  Sum_probs=47.8

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNY  281 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y  281 (323)
                      +|.+.+........|+.++|.|.+.|+ |.. .++|.+||..+..........  ..++  ...+.|.+   ..++.+.|
T Consensus         4 ~P~V~v~~~~~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~--~~dgtf~~~s~l~v---~~~~~~~y   78 (99)
T d1lk2b_           4 TPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSF--SKDWSFYILAHTEF---TPTETDTY   78 (99)
T ss_dssp             CCEEEEEESSCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEE--CTTCCEEEEEEEEE---CCCSSCCE
T ss_pred             CCEEEEEcCCCccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeE--CCCCCEEEEEEeEe---cCcCCCEE
Confidence            455543222334568889999999886 543 799999998875322111111  2222  12344444   45566789


Q ss_pred             EEEEeecc
Q psy15235        282 YCHGNNVA  289 (323)
Q Consensus       282 ~C~a~n~~  289 (323)
                      +|.+.+..
T Consensus        79 tC~V~H~s   86 (99)
T d1lk2b_          79 ACRVKHDS   86 (99)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99999976

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.1e-07  Score=57.20  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=49.9

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      |.+.+.|. ..+..|++|+|.|......   ...+.|+|+|.....    ..........+.|.+++.+|+|.|+|...
T Consensus         6 P~Lsa~P~-~~V~~G~~VTL~C~~~~~~---~~~f~L~k~g~~~~~----~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   76 (96)
T d1ucta2           6 PFLSADRG-LVLMPGENISLTCSSAHIP---FDRFSLAKEGELSLP----QHQSGEHPANFSLGPVDLNVSGIYRCYGW   76 (96)
T ss_dssp             CEEEESSC-SEECTTCCCEEEEECSSSC---CSEEEEEETTCSSCC----SEEECSSSEEEECCSCCGGGCEEEEEEEE
T ss_pred             CEEEEeCC-CccCCCCeEEEEEeCCCCC---ceEEEEEECCcccce----EEcCCCcccEEEEeccccccCcEEEEEEE
Confidence            44555554 3577899999999864333   358999999864433    11111345679999999999999999883

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.41  E-value=6.5e-07  Score=58.80  Aligned_cols=70  Identities=14%  Similarity=0.305  Sum_probs=50.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++|+|.|...+..   ...+.|||.  |.....        ......++.    .....|.|.+++.+|+
T Consensus         7 sP~~ltv~~G~svtl~C~~s~~~---~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKASEDI---YSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC
T ss_pred             eCCEEEECCCCCEEEEEecCCCc---ccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC
Confidence            46667788999999999887655   457999982  221111        112234444    4567899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|.+
T Consensus        84 a~YyCa~   90 (107)
T d1ospl1          84 ATYFCQQ   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEee
Confidence            9999988

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.40  E-value=1.1e-06  Score=58.24  Aligned_cols=71  Identities=20%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|......   ...+.||+.  |.....        ......+..      .....|.|.+++.+
T Consensus         5 ~P~~~~~~~G~~vtl~C~~~~~~---~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (110)
T d1u3ha1           5 SPQSLTVWEGETAILNCSYENSA---FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
T ss_dssp             SCSSEEEETTSCEEEEEEECCTT---EEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred             cCCEEEEcCCCCEEEEEEecCCC---CcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence            45666788999999999887654   567999983  221110        001111221      34568999999999


Q ss_pred             CCeeEEEEEE
Q psy15235        177 DAGQYSCRLI  186 (323)
Q Consensus       177 d~G~y~C~~~  186 (323)
                      |+|.|.|.++
T Consensus        82 Dsa~YyCa~~   91 (110)
T d1u3ha1          82 DSATYFCAAS   91 (110)
T ss_dssp             SCSEEEECCE
T ss_pred             CceeEeeeec
Confidence            9999999884

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.40  E-value=9.6e-07  Score=58.43  Aligned_cols=77  Identities=19%  Similarity=0.218  Sum_probs=49.8

Q ss_pred             eeceeEEeeCCeEEEEEEEecC-CCCcEEEEEC--Ceeee---c------cCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS-PPPTVEWRIG--NDTYF---R------SQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~--~~~~~---~------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      .|++..+.+|++++|.|...+. ....+.||+.  +..+.   .      ...+.......  ......|+|.+++.+|+
T Consensus         4 QP~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~Ds   81 (110)
T d2esvd1           4 QPPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITE--DRKSSTLILPHATLRDT   81 (110)
T ss_dssp             CCSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECT--TCSEEEEEESSCCGGGC
T ss_pred             cCCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecc--cCCeeeehhcccccCCc
Confidence            3556788899999999998543 3345899982  22111   0      11111111111  12468899999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+....
T Consensus        82 a~YyCa~~~~~   92 (110)
T d2esvd1          82 AVYYCIVVRSS   92 (110)
T ss_dssp             EEEEEEEEESC
T ss_pred             eEEEEEEeCCC
Confidence            99999987543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=1.3e-06  Score=57.53  Aligned_cols=77  Identities=19%  Similarity=0.241  Sum_probs=50.5

Q ss_pred             eeeeceeEEeeCCeEEEEEEEecC-CC--CcEEEEE--CCeeee-----------ccCCeeeeecCCCCCCcceeEEEee
Q psy15235        209 AKLVETLTVIEGEKLRLECLVVGS-PP--PTVEWRI--GNDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       209 ~~~~~~~~~~~g~~~~l~C~~~g~-p~--~~~~W~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      +..++...+.+|++++|.|...+. ..  ..+.||+  .|..+.           ....++....  .  .....|.|.+
T Consensus         4 ~tQ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~--~--~~~~~L~I~~   79 (110)
T d1oaql_           4 VTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--I--GNKAALTITG   79 (110)
T ss_dssp             EEECSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE--E--TTEEEEEEES
T ss_pred             EeeCCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecc--c--ccceeeecCC
Confidence            344556778899999999999643 22  2399997  222211           1122333321  1  1467899999


Q ss_pred             cCcCCCeEEEEEEeecc
Q psy15235        273 ATMADRGNYYCHGNNVA  289 (323)
Q Consensus       273 v~~~d~G~y~C~a~n~~  289 (323)
                      ++.+|+|.|.|.+....
T Consensus        80 ~~~~Dsa~YyCa~~~~~   96 (110)
T d1oaql_          80 AQTEDEAIYFCALWYSN   96 (110)
T ss_dssp             CCGGGCEEEEEEEEETT
T ss_pred             CCccccEeEEEEcccCC
Confidence            99999999999987543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.40  E-value=1.2e-06  Score=57.38  Aligned_cols=73  Identities=18%  Similarity=0.263  Sum_probs=49.6

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECC--ee---ee--------ccCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN--DT---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      .|....+.+|++++|.|...+.....+.||+..  ..   +.        ....++....    ......|+|.+++.+|
T Consensus         6 ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~----~~~~~~L~I~~~~~~D   81 (106)
T d1op3k1           6 SPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG----SGTEFTLTISGLQFDD   81 (106)
T ss_dssp             ECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEEESCCGGG
T ss_pred             cCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec----cCCEEEEEEccccccC
Confidence            355677889999999999865555579999832  11   11        0112333221    1135789999999999


Q ss_pred             CeEEEEEEee
Q psy15235        278 RGNYYCHGNN  287 (323)
Q Consensus       278 ~G~y~C~a~n  287 (323)
                      +|.|.|.+..
T Consensus        82 sa~YyCa~~~   91 (106)
T d1op3k1          82 FATYHCQHYA   91 (106)
T ss_dssp             CSEEEEEEEC
T ss_pred             CCcEeeeeCC
Confidence            9999998764

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=6.2e-07  Score=58.78  Aligned_cols=70  Identities=20%  Similarity=0.372  Sum_probs=49.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|......   ...+.|||.  |.....        ......++.    .....|.|.+++.+|+
T Consensus         7 sP~slsv~~G~svtl~C~~s~~~---~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           7 SPASLSVATGEKVTIRCMTSTDI---DDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (106)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eCCEEEECCCCCEEEEEEeCCCC---CccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence            45666688999999999876654   457999973  322111        112234444    3467899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|.+
T Consensus        84 a~YyCa~   90 (106)
T d1i8ka_          84 GDYYCLQ   90 (106)
T ss_dssp             EEEEEEE
T ss_pred             EEEeEec
Confidence            9999987

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.39  E-value=1.1e-06  Score=58.77  Aligned_cols=77  Identities=21%  Similarity=0.273  Sum_probs=50.7

Q ss_pred             eeceeEEeeCCeEEEEEEEecC-CCCcEEEEE--CCeeee--------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS-PPPTVEWRI--GNDTYF--------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      .+....+.+|++++|.|..... ....+.||+  .+....              ...+|+....  ........|+|.++
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~~~   83 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKH--ILTQKAFHLVISPV   83 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEE--EGGGTEEEEEESSC
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEe--cCceeEEeeeecCc
Confidence            3456678899999999998544 455799997  222211              0112333321  11123468999999


Q ss_pred             CcCCCeEEEEEEeecc
Q psy15235        274 TMADRGNYYCHGNNVA  289 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~~  289 (323)
                      +.+|+|.|.|.+....
T Consensus        84 ~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          84 RTEDSATYYCAFTLPP   99 (116)
T ss_dssp             CGGGCEEEEEEEECTT
T ss_pred             cccccccceeeEecCC
Confidence            9999999999887654

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=9.2e-07  Score=59.29  Aligned_cols=79  Identities=16%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             EEEeeceEEecCCcEEEEEEecc-----CceEEEEEcC--cccee---e------ccCcceEEEeeeeCCeEEEEEeecc
Q psy15235         25 ITYFGDTEIMEGAPINISCILTI-----FEQVKWQLNG--RNINQ---S------SVDSGFAATANLTEDNFKYSIHEAI   88 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~~-----~~~v~W~~~g--~~~~~---~------~~~~~~~~~~~~~~~~~~l~i~~~~   88 (323)
                      |..|..+.+.+|++|+|.|....     ...+.|+|..  ..+..   .      ....+..+..+...+.+.|.|.+++
T Consensus         3 it~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~   82 (116)
T d1xeda_           3 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS   82 (116)
T ss_dssp             SBCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ccCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhC
Confidence            34567788999999999998432     2357898832  11111   0      1223334455566778888888876


Q ss_pred             c--CcceEEEeeccCCc
Q psy15235         89 L--ESGYVQSSLFIPRM  103 (323)
Q Consensus        89 ~--~G~Y~C~~~~~~~~  103 (323)
                      .  +|.|+|.+......
T Consensus        83 ~~DsG~Y~C~v~~~~~~   99 (116)
T d1xeda_          83 QDDSGRYKCGLGINSRG   99 (116)
T ss_dssp             GGGCEEEEEEESCGGGC
T ss_pred             cCCCEEEEEEEEcCCCC
Confidence            5  99999998654443

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.38  E-value=1.4e-06  Score=57.88  Aligned_cols=73  Identities=21%  Similarity=0.409  Sum_probs=49.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .|......+|++|+|.|...+..-. ...+.||+  .+...........++.      .....|+|.+++.+|+|.|.|.
T Consensus         6 ~P~s~~~~~G~svtL~C~~s~~~~~-~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   84 (113)
T d1vesa_           6 TPRTATKETGESLTINCVLRDASFE-LKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQ   84 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEEESCSSC-CCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             eCCEEEEcCCCCEEEEEEECCCccc-CCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeee
Confidence            4666778899999999988753311 45799997  3322211112244443      3346899999999999999999


Q ss_pred             EE
Q psy15235        185 LI  186 (323)
Q Consensus       185 ~~  186 (323)
                      +.
T Consensus        85 ~~   86 (113)
T d1vesa_          85 AF   86 (113)
T ss_dssp             EE
T ss_pred             ee
Confidence            83

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.38  E-value=1.1e-06  Score=58.79  Aligned_cols=77  Identities=16%  Similarity=0.264  Sum_probs=50.6

Q ss_pred             eeeceeEEeeCCeEEEEEEEecC-CCCcEEEEEC-----Ceeee-----c-----------cCCeeeeecCCCCCCccee
Q psy15235        210 KLVETLTVIEGEKLRLECLVVGS-PPPTVEWRIG-----NDTYF-----R-----------SQGRIKLSEHPEKGTANSV  267 (323)
Q Consensus       210 ~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~-----~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~  267 (323)
                      +.|....+.+|++++|.|.+.+. ....+.|++.     ++.+.     .           ...++....  ........
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~   80 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILE--SSDSRRPF   80 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEE--STTSSSCE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEE--eCCCCeEE
Confidence            34556778899999999999754 3446999973     22110     0           112222221  12224678


Q ss_pred             EEEeecCcCCCeEEEEEEeec
Q psy15235        268 LQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       268 L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      |+|.+++.+|+|.|.|.+...
T Consensus        81 L~I~~~~~~Dsg~Y~Ca~~~~  101 (115)
T d2atpb1          81 LSIMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             EEECSCCGGGCEEEEEEEECS
T ss_pred             EeecccCCCCCcEEEEeEcCC
Confidence            999999999999999987643

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.38  E-value=4.7e-07  Score=59.20  Aligned_cols=75  Identities=19%  Similarity=0.331  Sum_probs=49.2

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      .|+...+.+|++++|.|.........+.||+.  |..+.           ....++...  .  ......|+|.+++.+|
T Consensus         4 Qp~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~L~I~~l~~~D   79 (103)
T d8faba1           4 QPPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSS--T--SGTTVTLTISGVQAED   79 (103)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE--E--ETTEEEEEETTCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEEC--C--CCCccCceEcCcchhH
Confidence            34567788999999999886544456999983  21111           001112111  0  1135789999999999


Q ss_pred             CeEEEEEEeecc
Q psy15235        278 RGNYYCHGNNVA  289 (323)
Q Consensus       278 ~G~y~C~a~n~~  289 (323)
                      +|.|.|.+.+..
T Consensus        80 sa~YyCA~~~~~   91 (103)
T d8faba1          80 EADYYCQAWDNS   91 (103)
T ss_dssp             CEEEEEEEEETT
T ss_pred             CceEEeeecCCC
Confidence            999999876543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=2.5e-06  Score=56.07  Aligned_cols=71  Identities=20%  Similarity=0.363  Sum_probs=49.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Cee----ccc----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKS----ITE----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~----~~~----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|......   ...+.||+.  +..    +..    ......++.    .....|.|.+++++|+
T Consensus         7 sP~~l~~~~G~svtL~C~~s~~~---~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           7 TPVSLSASVGETVTITCRASENI---YSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cCCEEEECCCCCEEEEEEeCCCc---CcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence            46666788999999999886554   457999982  221    111    111223443    4567899999999999


Q ss_pred             eeEEEEEE
Q psy15235        179 GQYSCRLI  186 (323)
Q Consensus       179 G~y~C~~~  186 (323)
                      |.|.|.++
T Consensus        84 a~YyCA~~   91 (109)
T d1mqkl_          84 GSYYCQHH   91 (109)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEeee
Confidence            99999883

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.37  E-value=8.2e-07  Score=59.35  Aligned_cols=75  Identities=20%  Similarity=0.327  Sum_probs=48.9

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEE--CCee---ee---cc------CCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRI--GNDT---YF---RS------QGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~---~~---~~------~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      +....+.+|++++|.|.........+.||+  .+..   +.   ..      ..+....  .........|+|.+++.+|
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~D   84 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAE--FSKSNSSFHLRKASVHWSD   84 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEE--CBTTTTBCCEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEE--EeCcCCEEEEecccccccc
Confidence            335678899999999998765566789997  2221   11   00      1111111  1111245789999999999


Q ss_pred             CeEEEEEEeec
Q psy15235        278 RGNYYCHGNNV  288 (323)
Q Consensus       278 ~G~y~C~a~n~  288 (323)
                      +|.|.|.+...
T Consensus        85 sg~YyCa~~~~   95 (115)
T d1i9ea_          85 SAVYFCAVSGF   95 (115)
T ss_dssp             CEEEEEEEEET
T ss_pred             cceecccccCC
Confidence            99999987643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.1e-06  Score=59.05  Aligned_cols=74  Identities=18%  Similarity=0.367  Sum_probs=48.0

Q ss_pred             CCceeEEecCCcEEEEEEeecC---CCCCCceEEEEECCee----c-c------ccccccCcEE------eceeEEEEee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSP---PPGDDYQIVWYKGNKS----I-T------EATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~---~~~~~~~i~W~~~~~~----~-~------~~~~~~~~~~------~~~~~l~i~~  172 (323)
                      .|....+.+|+.|+|.|.....   .......+.|++....    + .      ....+..|+.      ....+|+|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            4556678899999999987531   1100245667774321    1 0      0122344444      3466799999


Q ss_pred             eecCCCeeEEEEEE
Q psy15235        173 TTVDDAGQYSCRLI  186 (323)
Q Consensus       173 ~~~~d~G~y~C~~~  186 (323)
                      ++.+|+|.|.|.+.
T Consensus        86 v~~~DsG~Y~C~v~   99 (118)
T d1qfoa_          86 LKPEDSGTYNFRFE   99 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CChhHCEEEEEEEE
Confidence            99999999999994

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.35  E-value=1.4e-06  Score=57.16  Aligned_cols=75  Identities=16%  Similarity=0.298  Sum_probs=50.4

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEECC--ee---ee--------ccCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIGN--DT---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      .|....+.+|++++|.|.........+.||+..  ..   +.        ....++....    ......|+|.+++.+|
T Consensus         7 ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           7 SPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG----SGTEFTLTISTLRPED   82 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESSCCGGG
T ss_pred             eCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec----cCCEEEEEeccceeCc
Confidence            355677889999999999965545689999832  11   11        0112222221    1146789999999999


Q ss_pred             CeEEEEEEeecc
Q psy15235        278 RGNYYCHGNNVA  289 (323)
Q Consensus       278 ~G~y~C~a~n~~  289 (323)
                      ++.|.|.+.+..
T Consensus        83 sA~YyCa~~~~~   94 (107)
T d1tjgl1          83 FATYYCQQLHFY   94 (107)
T ss_dssp             CSEEEEEECSBS
T ss_pred             CceEEEEECcCC
Confidence            999999776543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=1.5e-06  Score=56.99  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=49.5

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.........+.||+.  +....           ....++....    ......|+|.+++.+|+
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~----~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG----SGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc----cCCEEEccccccCCcCC
Confidence            4456788999999999986555567899973  21111           1112333221    11357899999999999


Q ss_pred             eEEEEEEeec
Q psy15235        279 GNYYCHGNNV  288 (323)
Q Consensus       279 G~y~C~a~n~  288 (323)
                      |.|.|.+.+.
T Consensus        84 a~YyCa~~~~   93 (107)
T d1d5il1          84 GIYYCLQYDE   93 (107)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeeccC
Confidence            9999987654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=1.2e-06  Score=57.44  Aligned_cols=70  Identities=19%  Similarity=0.438  Sum_probs=49.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Cee---cc-c----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKS---IT-E----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~---~~-~----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|...+..   ...+.|||.  +..   +. .    ......++.    .....|.|.+++++|+
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESV---TSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT   82 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eCCeEEECCCCCEEEEEEeCCCC---CccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhC
Confidence            34566788999999999987655   567999973  221   11 1    111233444    4457899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|..
T Consensus        83 a~YyCa~   89 (106)
T d1lk3l1          83 AIYFCQQ   89 (106)
T ss_dssp             EEEEEEE
T ss_pred             CCccccc
Confidence            9999977

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9.3e-07  Score=59.76  Aligned_cols=74  Identities=19%  Similarity=0.395  Sum_probs=47.4

Q ss_pred             CceeEEecCCcEEEEEEeecCC--C--CCCceEEEEECCeeccc-------------cccccCcEE------eceeEEEE
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPP--P--GDDYQIVWYKGNKSITE-------------ATELSGRLT------QSKDSITI  170 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~--~--~~~~~i~W~~~~~~~~~-------------~~~~~~~~~------~~~~~l~i  170 (323)
                      +....+.+|+.|+|.|......  +  .....+.|++....-..             ...+.+|+.      ..+.+|+|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            4445678899999999874211  0  01356889885321100             122334444      34678999


Q ss_pred             eeeecCCCeeEEEEEEc
Q psy15235        171 RKTTVDDAGQYSCRLID  187 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~~~  187 (323)
                      .+++.+|+|.|.|.+..
T Consensus        88 ~~v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEK  104 (121)
T ss_dssp             CSCCGGGCEEEEEEEEE
T ss_pred             CCCChHHCEEEEEEEEe
Confidence            99999999999999943

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.35  E-value=1.4e-06  Score=57.57  Aligned_cols=72  Identities=25%  Similarity=0.441  Sum_probs=48.7

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--CeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEE
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCR  184 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~  184 (323)
                      .|.......|++++|.|...+..-. ...+.||+.  |.........++++.      .....|+|.+++.+|+|.|.|.
T Consensus         5 ~P~s~t~~~G~svtl~C~~s~~s~~-~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   83 (112)
T d1sq2n_           5 TPRSVTKETGESLTINCVLRDASYA-LGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCG   83 (112)
T ss_dssp             ECSEEEECTTCCEEEEEEECSCSSC-CCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             cCCEEEEcCCCCEEEEEEECCCccc-CCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEE
Confidence            4556667889999999987543211 457999982  221111112244443      2356899999999999999998


Q ss_pred             E
Q psy15235        185 L  185 (323)
Q Consensus       185 ~  185 (323)
                      +
T Consensus        84 ~   84 (112)
T d1sq2n_          84 L   84 (112)
T ss_dssp             E
T ss_pred             E
Confidence            8

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=1.2e-06  Score=57.51  Aligned_cols=73  Identities=16%  Similarity=0.312  Sum_probs=49.1

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceee---e--------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTY---F--------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~---~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|....+....+.||+.  +...   .        ....++....  .  .....|+|.+++.+|+
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~--~--~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG--S--GTDFTLTINNVQSEDL   83 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--E--TTEEEEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC--C--CCeeeeeechhheecc
Confidence            3456688999999999986554557999972  2211   1        1122333321  1  1357899999999999


Q ss_pred             eEEEEEEeec
Q psy15235        279 GNYYCHGNNV  288 (323)
Q Consensus       279 G~y~C~a~n~  288 (323)
                      +.|.|.+...
T Consensus        84 A~YyCa~~~~   93 (107)
T d1mexl1          84 AEYFCQQYNS   93 (107)
T ss_dssp             SEEEEEECSS
T ss_pred             eeEEEeECCC
Confidence            9999987643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=1.3e-06  Score=57.31  Aligned_cols=70  Identities=19%  Similarity=0.294  Sum_probs=49.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++|+|.|......   ...+.||+.  |.....        ......++.    .....|+|.++.++|+
T Consensus         6 sP~~l~~~~G~svtl~C~~s~~~---~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           6 SPSSLSASLGGKVTITCKASQDI---KKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             cCCEEEECCCCCEEEEEEcCCCC---CCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            45666788999999999876554   446999982  221110        111233443    4567899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|.+
T Consensus        83 A~YyCa~   89 (106)
T d1a0ql1          83 ATYYCLQ   89 (106)
T ss_dssp             SEEEEEE
T ss_pred             EeEEEEE
Confidence            9999988

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.4e-07  Score=57.48  Aligned_cols=73  Identities=22%  Similarity=0.282  Sum_probs=48.7

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      |.+...|. .++..|++|+|.|.... .   ...+.++|+|........ ..........+.|.+++..|+|.|+|...
T Consensus         5 P~Lsa~Ps-~~V~~G~~VTL~C~~~~-~---~~~f~L~keg~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1           5 PTLWAEPG-SVITQGSPVTLRCQGGQ-E---TQEYRLYREKKTAPWITR-IPQELVKKGQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCT-T---CCCEEEEESSSCCHHHHT-SCHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEeECC-CccCCCCcEEEEEeCCC-C---CCEEEEEECCCCcccEEE-ccCCCCCEEEEEEEecCHHHCCeEEEEEe
Confidence            44444444 34678999999998643 2   458899998864321000 00001345689999999999999999874

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.34  E-value=9.4e-07  Score=58.92  Aligned_cols=71  Identities=28%  Similarity=0.509  Sum_probs=49.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--eec----c----ccccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KSI----T----EATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~~----~----~~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|......   ...+.||+..  ...    .    .......++.      .....|+|.+++.+
T Consensus         6 ~P~~~~~~~G~~vtL~C~~~~~~---~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           6 SPQSLIILEGKNCTLQCNYTVSP---FSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             ECSEEEEETTCCCEEEEEECCSC---CSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             eCCEEEEeCCCCEEEEEEEcCCC---ccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            46667788999999999987655   5689999822  111    0    0111123333      45678999999999


Q ss_pred             CCeeEEEEEE
Q psy15235        177 DAGQYSCRLI  186 (323)
Q Consensus       177 d~G~y~C~~~  186 (323)
                      |+|.|.|.+.
T Consensus        83 Dsg~Y~Ca~~   92 (114)
T d2cdea1          83 DSASYICVVS   92 (114)
T ss_dssp             GCSEEEEEEE
T ss_pred             hCcccceeee
Confidence            9999999993

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=1.2e-06  Score=57.32  Aligned_cols=70  Identities=19%  Similarity=0.325  Sum_probs=49.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc----c----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT----E----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~----~----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|......   ...+.|||  .|....    .    ......++.    .....|.|.+++.+|+
T Consensus         7 ~P~s~~~~~G~svtl~C~~s~~~---~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           7 SPSSLSASLGERVSLTCRTSQEI---SGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF   83 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cCCEEEECCCCCEEEEEEeCCCC---CCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC
Confidence            45566688999999999887655   45799998  332211    0    111122332    4467899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|.+
T Consensus        84 a~YyCa~   90 (107)
T d1c5cl1          84 ADYYCLQ   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eEEEEec
Confidence            9999987

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=1.3e-06  Score=57.41  Aligned_cols=70  Identities=17%  Similarity=0.386  Sum_probs=49.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|......   ...+.|||.  |.....        ......++.    .....|.|.+++.+|+
T Consensus         7 ~p~~l~v~~G~~vtL~C~~~~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1j1pl_           7 SPATLSVTPGNSVSLSCRASQSI---GNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cCCeEEECCCCCEEEEEEecCCC---CcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC
Confidence            45666788999999999876654   457999983  222111        111234444    4567899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|..
T Consensus        84 a~YyCa~   90 (107)
T d1j1pl_          84 GMYFCQQ   90 (107)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999987

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.33  E-value=7e-07  Score=59.67  Aligned_cols=76  Identities=22%  Similarity=0.371  Sum_probs=50.0

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Cee---ee--c-------cCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDT---YF--R-------SQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~---~~--~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      +....+.+|++++|.|.........+.||+.  +..   +.  .       ...++...  .........|+|.+++.+|
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~D   84 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAE--FKKSETSFHLTKPSAHMSD   84 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEE--CBGGGTBCCEEESSCCGGG
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEE--ECCCCCEEEEeeccccccC
Confidence            4456788999999999987655567999982  221   10  0       11122221  1111234579999999999


Q ss_pred             CeEEEEEEeecc
Q psy15235        278 RGNYYCHGNNVA  289 (323)
Q Consensus       278 ~G~y~C~a~n~~  289 (323)
                      +|.|.|.+....
T Consensus        85 sa~YyCa~~~~~   96 (115)
T d1j8hd1          85 AAEYFCAVSESP   96 (115)
T ss_dssp             CEEEEEEEESST
T ss_pred             CccceeeecCCC
Confidence            999999997643

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.9e-06  Score=54.83  Aligned_cols=80  Identities=13%  Similarity=0.207  Sum_probs=46.7

Q ss_pred             ecceeeeeceeEEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCe-eeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235        205 MKPTAKLVETLTVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGR-IKLSEHPEKGTANSVLQIDEATMADRGNY  281 (323)
Q Consensus       205 ~~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~y  281 (323)
                      ++|.+.+..   ...++.++|.|.+.|+ |.. .++|.+||..+...... ..... ..++ .......-.+..++...|
T Consensus         3 vpP~V~v~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~-~~~~-t~~~~s~l~v~~~~~~~y   77 (94)
T d1de4a1           3 VPPLVKVTH---HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLP-NGDG-TYQGWITLAVPPGEEQRY   77 (94)
T ss_dssp             BCCEEEEEE---EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEE-CTTS-CEEEEEEEEECTTCGGGE
T ss_pred             CCCEEEEEE---cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEe-CCCc-eEEEEEEEEECCCCCCEE
Confidence            356555421   2346778999999885 654 79999999887532211 11111 1111 122222233445566689


Q ss_pred             EEEEeecc
Q psy15235        282 YCHGNNVA  289 (323)
Q Consensus       282 ~C~a~n~~  289 (323)
                      +|.+.+..
T Consensus        78 tC~V~H~s   85 (94)
T d1de4a1          78 TCQVEHPG   85 (94)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99999976

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=2.5e-06  Score=55.91  Aligned_cols=74  Identities=20%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Cee---eec--------cCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDT---YFR--------SQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~---~~~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.........+.||+.  +..   +..        ...++...  ..  .....|+|.+++.+|+
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~--~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGS--GS--GTDFTLTISSLEPEDF   83 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--ES--SSEEEEEECSCCTTCC
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCcccccccc--CC--CCEEEeEeeeeEeccc
Confidence            4456678899999999987655567999972  111   110        01111111  11  1357899999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+.+..
T Consensus        84 a~YyCA~~~~~   94 (108)
T d1jhll_          84 AMYICQQHNEY   94 (108)
T ss_dssp             SEEEEEECSSS
T ss_pred             eEEEEeeCCCc
Confidence            99999876543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.31  E-value=3e-06  Score=56.04  Aligned_cols=70  Identities=23%  Similarity=0.438  Sum_probs=48.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc------------cccccCcEE-----eceeEEEEeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE------------ATELSGRLT-----QSKDSITIRKT  173 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~------------~~~~~~~~~-----~~~~~l~i~~~  173 (323)
                      .|...++.+|++++|.|...+.    ...+.|||.  |.....            ....+.++.     .....|+|.++
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~~----~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   80 (111)
T d2esve1           5 FPSHSVIEKGQTVTLRCDPISG----HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA   80 (111)
T ss_dssp             ECSEEEEETTCCEEEEEECCTT----CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred             CCCEEEECCCCCEEEEEEECCC----CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence            4667778899999999985543    358999972  321110            112234443     23468999999


Q ss_pred             ecCCCeeEEEEEE
Q psy15235        174 TVDDAGQYSCRLI  186 (323)
Q Consensus       174 ~~~d~G~y~C~~~  186 (323)
                      ..+|+|.|.|.+.
T Consensus        81 ~~~Dsa~YyCa~~   93 (111)
T d2esve1          81 ELEDSGVYFCASS   93 (111)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCCceEEEeee
Confidence            9999999999873

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.31  E-value=2.1e-06  Score=54.94  Aligned_cols=62  Identities=26%  Similarity=0.499  Sum_probs=42.9

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEEC--Cee---cc----ccccccCcEE------eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKG--NKS---IT----EATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~---~~----~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      |++|+|.|......   ...+.|||.  +..   +.    ......+++.      .....|.|.+++++|+|.|.|.++
T Consensus         1 G~~vtl~C~~~~~~---~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRG---SQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTT---CCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEcccc---CCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEe
Confidence            78999999987655   568999982  221   10    0112233443      234689999999999999999984

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.31  E-value=1.5e-06  Score=57.84  Aligned_cols=71  Identities=21%  Similarity=0.443  Sum_probs=50.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Cee----ccc----cccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKS----ITE----ATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~----~~~----~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|...+..   ...+.|||.  |..    +..    .....+++.      .....|.|.+++.+
T Consensus         6 ~P~~v~v~~G~sv~L~C~~s~~~---~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSFTDSA---IYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEESCCC---EEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eCCEEEEcCCCCEEEEEEEecCc---ccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            56667788999999999987765   568999982  221    100    111122222      44678999999999


Q ss_pred             CCeeEEEEEE
Q psy15235        177 DAGQYSCRLI  186 (323)
Q Consensus       177 d~G~y~C~~~  186 (323)
                      |+|.|.|.+.
T Consensus        83 Dsg~YyCa~~   92 (113)
T d2bnqd1          83 DSATYLCAVR   92 (113)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCcEEeEeEe
Confidence            9999999984

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.8e-06  Score=56.61  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=49.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|......   ...+.|||.  |.....        ......++.    .....|.|.+++++|+
T Consensus         7 ~p~~l~~~~G~svtl~C~~s~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1mexl1           7 SQKFMSTSLGNRVSVTCKASQNV---GTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL   83 (107)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCCeEEECCCCCEEEEEEeCCCC---CCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence            55666788999999999876554   457999972  221110        111234444    3557899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|.+
T Consensus        84 A~YyCa~   90 (107)
T d1mexl1          84 AEYFCQQ   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeEEEeE
Confidence            9999987

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.31  E-value=1.5e-06  Score=57.48  Aligned_cols=75  Identities=19%  Similarity=0.298  Sum_probs=49.8

Q ss_pred             eeceeEEeeCCeEEEEEEEecC--CCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS--PPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      .|++..+.+|++++|.|...+.  ....+.||+.  +..+.           ....++....  .  .....|+|.+++.
T Consensus         6 Qp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~--~~~~~L~I~~~~~   81 (111)
T d1rzfl1           6 QPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK--S--GTSATLGITGLQT   81 (111)
T ss_dssp             CCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--E--TTEEEEEESSCCG
T ss_pred             eCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC--C--CCEeeeEEeeecc
Confidence            3456778899999999998543  2346999973  11111           0112232221  1  1357899999999


Q ss_pred             CCCeEEEEEEeecc
Q psy15235        276 ADRGNYYCHGNNVA  289 (323)
Q Consensus       276 ~d~G~y~C~a~n~~  289 (323)
                      +|+|.|.|.+....
T Consensus        82 ~Dsa~YyCA~~~~~   95 (111)
T d1rzfl1          82 GDEADYYCGTWDSS   95 (111)
T ss_dssp             GGCSEEEEEEEETT
T ss_pred             ccCcceEEeecCCC
Confidence            99999999887543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.31  E-value=3.2e-06  Score=54.02  Aligned_cols=79  Identities=16%  Similarity=0.080  Sum_probs=53.7

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG  285 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a  285 (323)
                      +|.+...++..+..|++++|.|... .....+.++++|...........    .........+.|.+++.+|+|.|.|..
T Consensus         2 KPsLsa~P~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~----~~~~~~~a~F~l~~v~~~~~G~Y~C~y   76 (96)
T d1nkra1           2 KPSLLAHPGPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGE----HHDGVSKANFSISRMTQDLAGTYRCYG   76 (96)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECE----EETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeeCCCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeee----ecCCceEEEEEEcccCcccCeEEEEEE
Confidence            5777766778889999999999975 33557899987753211000000    001113577999999999999999987


Q ss_pred             eecc
Q psy15235        286 NNVA  289 (323)
Q Consensus       286 ~n~~  289 (323)
                      ....
T Consensus        77 ~~~~   80 (96)
T d1nkra1          77 SVTH   80 (96)
T ss_dssp             EBTT
T ss_pred             EcCC
Confidence            6543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.9e-06  Score=56.72  Aligned_cols=72  Identities=19%  Similarity=0.325  Sum_probs=48.9

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Cee---ee--------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDT---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.........+.||+.  +..   +.        ....++....    ......|+|.+++.+|+
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~----~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG----SGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec----cCCEEEEEEccccccCC
Confidence            4556778899999999986554556999982  221   11        0112222221    12467899999999999


Q ss_pred             eEEEEEEee
Q psy15235        279 GNYYCHGNN  287 (323)
Q Consensus       279 G~y~C~a~n  287 (323)
                      |.|.|.+..
T Consensus        84 a~YyCA~~~   92 (109)
T d1mqkl_          84 GSYYCQHHY   92 (109)
T ss_dssp             EEEEEEECS
T ss_pred             eeEEEeeeC
Confidence            999998764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.31  E-value=1.8e-06  Score=56.50  Aligned_cols=71  Identities=20%  Similarity=0.395  Sum_probs=49.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc----c----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT----E----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~----~----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|......   ...+.||+.  +....    .    ......++.    .....|.|.+++++|+
T Consensus         6 ~P~sl~~~~G~svtL~C~~~~~~---~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           6 SPSTLSASVGDTITITCRASQSI---ETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             ECSEEEECTTCEEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             cCCeEEECCCCCEEEEEEeCCCC---CCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            46667788999999999887655   457999983  22111    0    111223443    4556899999999999


Q ss_pred             eeEEEEEE
Q psy15235        179 GQYSCRLI  186 (323)
Q Consensus       179 G~y~C~~~  186 (323)
                      |.|.|.+.
T Consensus        83 a~YyCa~~   90 (106)
T d1op3k1          83 ATYHCQHY   90 (106)
T ss_dssp             SEEEEEEE
T ss_pred             CcEeeeeC
Confidence            99999873

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.31  E-value=2.6e-06  Score=56.40  Aligned_cols=71  Identities=18%  Similarity=0.346  Sum_probs=47.9

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec---c-c----cccccCcEE----eceeEEEEeeeecCCCee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI---T-E----ATELSGRLT----QSKDSITIRKTTVDDAGQ  180 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~---~-~----~~~~~~~~~----~~~~~l~i~~~~~~d~G~  180 (323)
                      ....+.+|++++|.|...+..-. ...+.||+.  +...   . .    .....+++.    .....|.|.+++.+|++.
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~   86 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIG-SNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEAD   86 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTT-TSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcEEeCCCCCEEEEEEECCcccc-CCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCce
Confidence            35667889999999987654311 357899983  2211   0 0    112233443    446789999999999999


Q ss_pred             EEEEEE
Q psy15235        181 YSCRLI  186 (323)
Q Consensus       181 y~C~~~  186 (323)
                      |.|.++
T Consensus        87 YyCA~~   92 (114)
T d2rhea_          87 YYCAAW   92 (114)
T ss_dssp             EEEEEE
T ss_pred             EEEeec
Confidence            999884

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.31  E-value=1.7e-06  Score=57.82  Aligned_cols=72  Identities=18%  Similarity=0.337  Sum_probs=49.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc-----------cccccCcEE------eceeEEEEeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE-----------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~-----------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      .|....+.+|++++|.|.......  ...+.||+  .|.....           .....+|+.      .....|+|.++
T Consensus         6 ~p~~~~~~~G~~vtL~C~~~~~~~--~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (116)
T d1tvda_           6 SSPDQTVASGSEVVLLCTYDTVYS--NPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV   83 (116)
T ss_dssp             CSCCEEEETTCCEEECCEEECCSS--SCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred             cCCCEEEcCCCCEEEEEEEcCCcc--CCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCc
Confidence            456667889999999998765432  46899997  2221110           122334554      23357999999


Q ss_pred             ecCCCeeEEEEEE
Q psy15235        174 TVDDAGQYSCRLI  186 (323)
Q Consensus       174 ~~~d~G~y~C~~~  186 (323)
                      +.+|+|.|.|.+.
T Consensus        84 ~~~Dsg~YyCa~~   96 (116)
T d1tvda_          84 RTEDSATYYCAFT   96 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccccceeeEe
Confidence            9999999999883

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=8.6e-07  Score=59.09  Aligned_cols=72  Identities=17%  Similarity=0.277  Sum_probs=48.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEECC--ee---cc---c--------cccccCcEE----eceeEEEEee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGN--KS---IT---E--------ATELSGRLT----QSKDSITIRK  172 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~--~~---~~---~--------~~~~~~~~~----~~~~~l~i~~  172 (323)
                      .|....+.+|++|+|.|.......  ...+.|||-.  ..   +.   .        ......++.    .....|+|.+
T Consensus         6 sP~~~t~~~G~~vtL~C~~~~~~~--~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~   83 (114)
T d1akjd_           6 SPLDRTWNLGETVELKCQVLLSNP--TSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSD   83 (114)
T ss_dssp             ECCSCCCCTTCCEEEEEEECCSSC--CSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESS
T ss_pred             CCCcEeccCCCcEEEEEEeCCCcC--CCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEcc
Confidence            455566788999999999866432  3468999821  11   10   0        111123443    3456899999


Q ss_pred             eecCCCeeEEEEEE
Q psy15235        173 TTVDDAGQYSCRLI  186 (323)
Q Consensus       173 ~~~~d~G~y~C~~~  186 (323)
                      ++.+|+|.|.|.+.
T Consensus        84 l~~~Dsg~YyCa~~   97 (114)
T d1akjd_          84 FRRENEGYYFCSAL   97 (114)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCCCCCEEEeEeEc
Confidence            99999999999984

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=1.9e-06  Score=56.58  Aligned_cols=70  Identities=24%  Similarity=0.408  Sum_probs=49.7

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++|+|.|......   ...+.||+.  +.....        ......++.    .....|+|.+++.+|+
T Consensus         7 sP~~l~v~~G~svtl~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           7 SPKSMGMSVGEAVTLNCKASENV---GTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD   83 (107)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cCCEEeECCCCCEEEEEEecCCc---CCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence            56667788999999999987655   457999983  221110        111233333    4567899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|.+
T Consensus        84 a~YyCa~   90 (107)
T d1kcvl1          84 ADYYCGQ   90 (107)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEe
Confidence            9999987

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.30  E-value=4e-06  Score=55.57  Aligned_cols=70  Identities=24%  Similarity=0.474  Sum_probs=48.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc------------ccccccCcEE-----eceeEEEEeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT------------EATELSGRLT-----QSKDSITIRKT  173 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~------------~~~~~~~~~~-----~~~~~l~i~~~  173 (323)
                      .|...++.+|++++|.|...+.    ...+.|||.  +....            ......+++.     .....|+|.++
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~~----~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (112)
T d1kgce1           5 SPRYKVAKRGQDVALRCDPISG----HVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT   80 (112)
T ss_dssp             ECSEEEEETTCCEEEEEECCTT----CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred             CCCeEEECCCCCEEEEEEECCC----CCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence            4666778899999999986543    357999982  22110            0112233333     33568999999


Q ss_pred             ecCCCeeEEEEEE
Q psy15235        174 TVDDAGQYSCRLI  186 (323)
Q Consensus       174 ~~~d~G~y~C~~~  186 (323)
                      +++|+|.|.|.++
T Consensus        81 ~~~Dsa~YyCa~~   93 (112)
T d1kgce1          81 QQEDSAVYLCASS   93 (112)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcCCCEEEEEeee
Confidence            9999999999884

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.30  E-value=1.3e-06  Score=57.85  Aligned_cols=77  Identities=16%  Similarity=0.313  Sum_probs=51.0

Q ss_pred             eeceeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      .|....+.+|++++|.|...+..  ...+.|++.  +..+.           ...+++......  ......|+|.+++.
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~l~~   83 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDR--SSNSASLTISGLKT   83 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET--TTTEEEEEECSCCG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecC--CCCccccccccCCc
Confidence            45567788999999999986542  235999983  22211           112333333111  12468899999999


Q ss_pred             CCCeEEEEEEeecc
Q psy15235        276 ADRGNYYCHGNNVA  289 (323)
Q Consensus       276 ~d~G~y~C~a~n~~  289 (323)
                      +|++.|.|.+.+..
T Consensus        84 ~Dsa~YyCA~~~~~   97 (111)
T d1cd0a_          84 EDEADYYCQSYDAR   97 (111)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             ccCcEEEEeeccCC
Confidence            99999999876543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.2e-06  Score=59.22  Aligned_cols=77  Identities=23%  Similarity=0.373  Sum_probs=49.2

Q ss_pred             eeceeEEeeCCeEEEEEEEecC----C---CCcEEEEECCeeee-------c---------cCCeeeeecCCCCCCccee
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS----P---PPTVEWRIGNDTYF-------R---------SQGRIKLSEHPEKGTANSV  267 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~----p---~~~~~W~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~  267 (323)
                      .+...++.+|+.++|.|.....    .   ...+.|++....-.       .         ..+|+.+..  +......+
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~s   84 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLG--DPQTKNCT   84 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECS--CGGGTBCC
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEee--eCcCCEEE
Confidence            3456778899999999998421    1   12478988543211       0         112333331  11224678


Q ss_pred             EEEeecCcCCCeEEEEEEeecc
Q psy15235        268 LQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       268 L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      |+|.+++.+|+|.|.|.+....
T Consensus        85 L~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          85 LSIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             EEECSCCGGGCEEEEEEEEETT
T ss_pred             EEECCCChHHCEEEEEEEEeCC
Confidence            9999999999999999997543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=7e-07  Score=58.69  Aligned_cols=72  Identities=17%  Similarity=0.281  Sum_probs=48.5

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.........+.||+.  |..+.           ....++...    .......|+|.+++.+|+
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~----~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGS----GSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCE----EETTEEEEECSCCCSCCC
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEE----ccCCEEEEEEeEeeecCC
Confidence            4456688999999999987665567999973  22211           011222211    112457899999999999


Q ss_pred             eEEEEEEee
Q psy15235        279 GNYYCHGNN  287 (323)
Q Consensus       279 G~y~C~a~n  287 (323)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d3cx5k1          84 ATYFCQHHI   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             CcEEeeeCC
Confidence            999997653

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.30  E-value=1.5e-06  Score=56.04  Aligned_cols=80  Identities=18%  Similarity=0.239  Sum_probs=47.2

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNY  281 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y  281 (323)
                      +|.+.+........|+..+|.|.+.|+ |. ..++|.+||..+........... ..++  ...+.|.+.   .++...|
T Consensus         5 ~P~V~v~~~~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~-~~dgtf~~~s~l~v~---~~~~~~y   80 (99)
T d1uvqa1           5 VPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLS-KSDHSFFKISYLTFL---PSADEIY   80 (99)
T ss_dssp             CCEEEEEESSCCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEE-CTTSCEEEEEEEEEC---CCTTCCE
T ss_pred             CCEEEEEcCCcccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEE-CCCCCEEEEEEEEEc---CCCCCEE
Confidence            344443222334567889999999886 54 37999999988753211111111 1111  123445554   3455689


Q ss_pred             EEEEeecc
Q psy15235        282 YCHGNNVA  289 (323)
Q Consensus       282 ~C~a~n~~  289 (323)
                      +|.+.+..
T Consensus        81 tC~V~H~s   88 (99)
T d1uvqa1          81 DCKVEHWG   88 (99)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99999976

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.30  E-value=2.4e-06  Score=56.31  Aligned_cols=72  Identities=15%  Similarity=0.317  Sum_probs=48.7

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECC--ee---ee--------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGN--DT---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|...+.....+.||+..  ..   +.        ....++....    ......|+|.+++.+|+
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~----~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSG----SGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeC----CCCEeEEEEeeceeCcC
Confidence            44566889999999999976545578999821  11   11        0112232221    11356899999999999


Q ss_pred             eEEEEEEee
Q psy15235        279 GNYYCHGNN  287 (323)
Q Consensus       279 G~y~C~a~n  287 (323)
                      |.|.|.+..
T Consensus        86 a~YyCA~~~   94 (109)
T d1bwwa_          86 ATYYCQQYQ   94 (109)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEeecC
Confidence            999998765

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.29  E-value=1e-06  Score=58.40  Aligned_cols=74  Identities=22%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |+...+.+|++++|.|...+.....+.||+.  |....           ...+++....  ........|.|.+++.+|+
T Consensus         7 p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~~~~~Ds   84 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFL--NKSAKHLSLHIVPSQPGDS   84 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE--ETTTTEEEEEESSCCGGGC
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEE--EccCCEEEEEECCCccccc
Confidence            4566788999999999987665567899982  22111           0112232221  1112478999999999999


Q ss_pred             eEEEEEEee
Q psy15235        279 GNYYCHGNN  287 (323)
Q Consensus       279 G~y~C~a~n  287 (323)
                      |.|.|.+..
T Consensus        85 a~YyCa~~~   93 (111)
T d1bd2d1          85 AVYFCAAME   93 (111)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEeeccC
Confidence            999998774

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.29  E-value=1.7e-06  Score=55.54  Aligned_cols=81  Identities=20%  Similarity=0.185  Sum_probs=42.4

Q ss_pred             ceeeeeceeEEeeCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEE
Q psy15235        207 PTAKLVETLTVIEGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCH  284 (323)
Q Consensus       207 p~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~  284 (323)
                      |.+.+.+......++..+|.|.+.|+ |. ..++|.+||..+........... ..++ .......-.+..++...|+|.
T Consensus         3 P~V~v~p~~~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~-~~dg-ty~~~s~l~v~~~~~~~ytC~   80 (97)
T d1uvqb1           3 PTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIR-NGDW-TFQILVMLEMTPQRGDVYTCH   80 (97)
T ss_dssp             CEEEEEEC--------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE-CSSS-CEEEEEEEECCSCTTCCEEEE
T ss_pred             CEEEEecCCcccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeec-CCCc-eEEEEEEeccCCCCCCEEEEE
Confidence            44443333334457778999999876 43 47999999987653211111110 1111 122222334456667789999


Q ss_pred             Eeecc
Q psy15235        285 GNNVA  289 (323)
Q Consensus       285 a~n~~  289 (323)
                      +.+..
T Consensus        81 V~H~s   85 (97)
T d1uvqb1          81 VEHPS   85 (97)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            99986

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.28  E-value=3.5e-06  Score=54.28  Aligned_cols=72  Identities=10%  Similarity=0.191  Sum_probs=47.8

Q ss_pred             CceEEEeeceEEecCCcEEEEEEec-cCceEEEEEcCccceeeccCcceEEEeeeeCC--eEEEEEeecccCcceEEEee
Q psy15235         22 DGKITYFGDTEIMEGAPINISCILT-IFEQVKWQLNGRNINQSSVDSGFAATANLTED--NFKYSIHEAILESGYVQSSL   98 (323)
Q Consensus        22 ~~~i~~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~G~Y~C~~~   98 (323)
                      ++.+.......|..|++|+|.|... ....+.|+|+|.......      ........  .+.|......++|.|+|...
T Consensus         6 kPsLsa~P~~~V~~G~~VTL~C~~~~~~~~f~L~k~g~~~~~~~------~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~   79 (99)
T d1nkra2           6 KPSLSAQPGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRL------PAGPKVNGTFQADFPLGPATHGGTYRCFGS   79 (99)
T ss_dssp             CCEEEEESCSEECTTCEEEEEEEESSCCSEEEEEETTCSSCEEE------ECEEEETTEEEEEEEEEECCSCEEEEEEEE
T ss_pred             CCEEEEeCCCcccCCCeEEEEECCCCCccEEEEEECCCccccEE------EccccCCccEEEEEeccccccCEEEEEEee
Confidence            4556655566789999999999954 567899999886554420      00111222  34556666667999999875


Q ss_pred             c
Q psy15235         99 F   99 (323)
Q Consensus        99 ~   99 (323)
                      .
T Consensus        80 ~   80 (99)
T d1nkra2          80 F   80 (99)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.27  E-value=2.2e-06  Score=56.80  Aligned_cols=74  Identities=18%  Similarity=0.313  Sum_probs=49.4

Q ss_pred             eeceeEEeeCCeEEEEEEEecC--CCCcEEEEECCe--e---ee--------ccCCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS--PPPTVEWRIGND--T---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~~~--~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      .++...+.+|++++|.|...+.  ....+.||+...  .   +.        ....++....    ......|+|.+++.
T Consensus         6 Q~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~   81 (114)
T d2rhea_           6 QPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK----SGTSASLAISGLES   81 (114)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE----ETTEEEEEESSCCG
T ss_pred             cCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC----CCCeeeeEecccCc
Confidence            3446778899999999998654  345699998421  1   11        0111222221    11367899999999


Q ss_pred             CCCeEEEEEEeec
Q psy15235        276 ADRGNYYCHGNNV  288 (323)
Q Consensus       276 ~d~G~y~C~a~n~  288 (323)
                      +|++.|.|.+...
T Consensus        82 ~DsA~YyCA~~~~   94 (114)
T d2rhea_          82 EDEADYYCAAWND   94 (114)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             ccCceEEEeecCC
Confidence            9999999988753

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7.4e-07  Score=59.40  Aligned_cols=68  Identities=18%  Similarity=0.292  Sum_probs=44.1

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEEC--Cee---ccc--------cccccCcEE------eceeEEEEeeeecCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKS---ITE--------ATELSGRLT------QSKDSITIRKTTVDD  177 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~---~~~--------~~~~~~~~~------~~~~~l~i~~~~~~d  177 (323)
                      ..+.+|++++|.|...+.... ...+.|||.  +..   +..        .....+|+.      .....|+|.+++.+|
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~-~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFA-SSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHT-TSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEEccCCCEEEEEEeCCCCCC-CCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            446789999999987532100 357889983  211   110        111233443      234679999999999


Q ss_pred             CeeEEEEE
Q psy15235        178 AGQYSCRL  185 (323)
Q Consensus       178 ~G~y~C~~  185 (323)
                      +|.|.|.+
T Consensus        88 sg~Y~Cav   95 (113)
T d1smoa_          88 SGLYQCVI   95 (113)
T ss_dssp             CEEEEEEE
T ss_pred             CceEEEEE
Confidence            99999998

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.27  E-value=5.2e-06  Score=53.43  Aligned_cols=69  Identities=19%  Similarity=0.324  Sum_probs=43.3

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEece---eEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK---DSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +..|+.++|.|.+.++.|. ...++|++||..+.............+   .......+...+.+.|+|++ .+.
T Consensus        14 ~~~~~~~tL~C~v~gFyP~-~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V-~H~   85 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPP-VINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKV-EHW   85 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSS-CCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEE-ECT
T ss_pred             cccCCCEEEEEEEEeEECC-CCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEE-EEC
Confidence            3458899999999998765 589999999988764211111111111   11122233345677899999 665

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.26  E-value=2.4e-06  Score=56.06  Aligned_cols=70  Identities=20%  Similarity=0.374  Sum_probs=49.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++|+|.|......   ...+.||+.  +.....        .....+++.    .....|.|.+++.+|+
T Consensus         7 ~P~sl~~~~G~svtl~C~~s~~~---~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           7 SPSSMYASLGERVTITCKASQDI---NSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eCCEEEECCCCCEEEEEEcCCCC---CCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence            45666788999999999886655   457899973  221100        111234443    4557899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|..
T Consensus        84 a~YyCa~   90 (107)
T d1d5il1          84 GIYYCLQ   90 (107)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeee
Confidence            9999987

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.26  E-value=1.4e-06  Score=57.23  Aligned_cols=75  Identities=19%  Similarity=0.294  Sum_probs=49.3

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee---c--------cCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF---R--------SQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~---~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      .++...+.+|++++|.|.........+.||+.  +..+.   .        ...++....    ......|+|.+++.+|
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~~~D   81 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSN----SGNMATLTISRVEAGD   81 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEESSCCGGG
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeec----CCCccceEEeeeccCC
Confidence            34456788999999999975433456999973  22111   0        112222211    1246789999999999


Q ss_pred             CeEEEEEEeecc
Q psy15235        278 RGNYYCHGNNVA  289 (323)
Q Consensus       278 ~G~y~C~a~n~~  289 (323)
                      ++.|.|.+....
T Consensus        82 savYyCA~~~~~   93 (109)
T d1w72l1          82 EADYYCQVWDSR   93 (109)
T ss_dssp             CEEEEEEEEETT
T ss_pred             CEEEEEEecCCC
Confidence            999999987643

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.26  E-value=1.1e-06  Score=58.54  Aligned_cols=77  Identities=17%  Similarity=0.318  Sum_probs=49.3

Q ss_pred             eceeEEeeCCeEEEEEEEecC-CCCcEEEEEC--Ceeee-----c-------cCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235        212 VETLTVIEGEKLRLECLVVGS-PPPTVEWRIG--NDTYF-----R-------SQGRIKLSEHPEKGTANSVLQIDEATMA  276 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~--~~~~~-----~-------~~~~~~~~~~~~~~~~~~~L~i~~v~~~  276 (323)
                      +....+.+|++++|.|..... ....+.||+.  +..+.     .       ...+.......  ......|+|.+++.+
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~   84 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQK--STSSFNFTITASQVV   84 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEET--TTTEEEEEESSCCGG
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcC--CCCEEEEeecccccc
Confidence            445678899999999987533 3446899982  22211     0       01111121111  123678999999999


Q ss_pred             CCeEEEEEEeeccc
Q psy15235        277 DRGNYYCHGNNVAT  290 (323)
Q Consensus       277 d~G~y~C~a~n~~g  290 (323)
                      |+|.|.|.+....+
T Consensus        85 Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          85 DSAVYFCALSGFYN   98 (114)
T ss_dssp             GCEEEEEEEECSBT
T ss_pred             cCCCceEeCCCCCC
Confidence            99999998876653

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.26  E-value=2e-06  Score=56.87  Aligned_cols=75  Identities=15%  Similarity=0.084  Sum_probs=48.5

Q ss_pred             EEeeceEEecCCcEEEEEEec---cCceEEEEEc--Cccceee-------ccCcceEEEeeeeCCeEEEEEeeccc--Cc
Q psy15235         26 TYFGDTEIMEGAPINISCILT---IFEQVKWQLN--GRNINQS-------SVDSGFAATANLTEDNFKYSIHEAIL--ES   91 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~--g~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~--~G   91 (323)
                      ++|..+.+.+|++|+|.|...   ....+.|||.  |+....-       ..........+.....+.|.|.++..  +|
T Consensus         3 tQP~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   82 (110)
T d2esvd1           3 TQPPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTA   82 (110)
T ss_dssp             BCCSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCE
T ss_pred             CcCCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCce
Confidence            446678899999999999843   2346899993  3322111       01122233444456778888888754  99


Q ss_pred             ceEEEeecc
Q psy15235         92 GYVQSSLFI  100 (323)
Q Consensus        92 ~Y~C~~~~~  100 (323)
                      .|+|.+...
T Consensus        83 ~YyCa~~~~   91 (110)
T d2esvd1          83 VYYCIVVRS   91 (110)
T ss_dssp             EEEEEEEES
T ss_pred             EEEEEEeCC
Confidence            999988643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.26  E-value=5.1e-06  Score=55.55  Aligned_cols=71  Identities=14%  Similarity=0.412  Sum_probs=49.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc-------------cccccCcEE-----eceeEEEEee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE-------------ATELSGRLT-----QSKDSITIRK  172 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~-------------~~~~~~~~~-----~~~~~l~i~~  172 (323)
                      .|....+.+|++|+|.|...+..   ...+.|||  .|..+..             ......++.     .....|+|.+
T Consensus         7 ~P~~~~~~~G~~v~L~C~~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           7 HPSMVIVKSGTSVKIECRSLDTN---IHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             ECSEEEECTTCCEEEEEEECSSC---CSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             cCCeEEEcCCCCEEEEEEEcCCc---ccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            45667788999999999986655   56899998  3321110             111233443     2345799999


Q ss_pred             eecCCCeeEEEEEE
Q psy15235        173 TTVDDAGQYSCRLI  186 (323)
Q Consensus       173 ~~~~d~G~y~C~~~  186 (323)
                      ++++|+|.|.|.+.
T Consensus        84 ~~~~Dsa~YyCa~~   97 (118)
T d2ij0c1          84 AHPEDSGFYVCSAL   97 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccCceEEEEEe
Confidence            99999999999983

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.26  E-value=2.5e-06  Score=56.24  Aligned_cols=70  Identities=19%  Similarity=0.363  Sum_probs=49.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Cee---cc-c----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKS---IT-E----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~---~~-~----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|...+..   ...+.||+.  +..   +. .    ......++.    .....|+|.+++.+|+
T Consensus         9 sP~~l~~~~G~svtL~C~~s~~~---~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_           9 SPSSLSASVGDRVTITCQASQDI---IKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eCCEEEECCCCCEEEEEEecCCC---CCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            46667788999999999987755   457899982  221   11 0    111233443    3456899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|.+
T Consensus        86 a~YyCA~   92 (109)
T d1bwwa_          86 ATYYCQQ   92 (109)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEee
Confidence            9999988

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.26  E-value=2.5e-06  Score=56.93  Aligned_cols=76  Identities=16%  Similarity=0.297  Sum_probs=49.2

Q ss_pred             eceeEEeeCCeEEEEEEEec-CCCCcEEEEEC--Ceeee------------ccCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235        212 VETLTVIEGEKLRLECLVVG-SPPPTVEWRIG--NDTYF------------RSQGRIKLSEHPEKGTANSVLQIDEATMA  276 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  276 (323)
                      +....+.+|++++|.|.... .....+.||+.  +..+.            ...+++....  +.......|+|.+++.+
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~~~~~   83 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNF--QKPKSSIGLIITATQIE   83 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEE--EGGGTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEE--eccCCEEEEEECCCCcc
Confidence            45667889999999999854 33446899982  21111            0012222221  11113577999999999


Q ss_pred             CCeEEEEEEeecc
Q psy15235        277 DRGNYYCHGNNVA  289 (323)
Q Consensus       277 d~G~y~C~a~n~~  289 (323)
                      |+|.|.|.+....
T Consensus        84 Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          84 DSAVYFCAMRGDY   96 (115)
T ss_dssp             GCEEEEEEEECCC
T ss_pred             ccccccceeecCC
Confidence            9999999987654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.25  E-value=6.7e-07  Score=59.34  Aligned_cols=76  Identities=24%  Similarity=0.378  Sum_probs=49.1

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|.........+.||+.  +....           ....+.....  ........|+|.+++.+|+
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF--NKREKKLSLHIADSQPGDS   83 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE--ETGGGEEEEEESSCCTTSC
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEE--CCCCCeeEeEeccCCCCCc
Confidence            4456788999999999986544446999973  22111           0011111111  1112457899999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+....
T Consensus        84 a~YyCa~~~~~   94 (110)
T d1u3ha1          84 ATYFCAASANS   94 (110)
T ss_dssp             SEEEECCEESS
T ss_pred             eeEeeeecCCC
Confidence            99999987543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.25  E-value=2.1e-06  Score=57.24  Aligned_cols=71  Identities=17%  Similarity=0.296  Sum_probs=48.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc----c----cccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT----E----ATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~----~----~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .+....+.+|++++|.|......   ...+.|||.  |....    .    ......++.      .....|.|.+++++
T Consensus         7 ~~~~v~v~~G~~vtL~C~~~~~~---~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           7 TEGLVTLTEGLPVMLNCTYQSTY---SPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             CCSEEEEETTSCEEECEEEECSS---SCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             CCCeEEECCCCCEEEEEEEeCCC---cCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            45566688999999999987665   567999983  22111    0    011122222      33567999999999


Q ss_pred             CCeeEEEEEE
Q psy15235        177 DAGQYSCRLI  186 (323)
Q Consensus       177 d~G~y~C~~~  186 (323)
                      |+|.|.|.+.
T Consensus        84 Dsg~YyCa~~   93 (115)
T d1lp9e1          84 DSALYYCALF   93 (115)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCccceEEEE
Confidence            9999999883

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.25  E-value=1.4e-06  Score=55.72  Aligned_cols=68  Identities=18%  Similarity=0.336  Sum_probs=45.1

Q ss_pred             CCeEEEEEEEecCCCCcEEEEEC--Cee---ee-------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEee
Q psy15235        220 GEKLRLECLVVGSPPPTVEWRIG--NDT---YF-------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNN  287 (323)
Q Consensus       220 g~~~~l~C~~~g~p~~~~~W~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n  287 (323)
                      |++++|.|.........+.||+.  +..   +.       ...+++.....  .......|+|.+++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~--~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLN--KASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEec--CCCCEEeEEeeccccCcCccceeeEec
Confidence            78999999987665667999972  111   10       11223333211  112357899999999999999999875


Q ss_pred             cc
Q psy15235        288 VA  289 (323)
Q Consensus       288 ~~  289 (323)
                      ..
T Consensus        79 ~~   80 (94)
T d2gj6d1          79 DS   80 (94)
T ss_dssp             ST
T ss_pred             CC
Confidence            43

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.24  E-value=5.2e-06  Score=54.88  Aligned_cols=71  Identities=21%  Similarity=0.281  Sum_probs=48.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc--------cccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE--------ATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~--------~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|......   ...+.||+  .|.....        .....+++.      .....|.|.+++.+
T Consensus         6 ~p~s~~~~~G~svtl~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           6 NSPSLSVQEGRISILNCDYTNSM---FDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             CCSEEEEETTSCEEEEEEECCTT---CCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cCCEEEEcCCCCEEEEEEeCCCC---CCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            45666688999999999876655   45789998  2321110        011122332      44678999999999


Q ss_pred             CCeeEEEEEE
Q psy15235        177 DAGQYSCRLI  186 (323)
Q Consensus       177 d~G~y~C~~~  186 (323)
                      |+|.|.|.++
T Consensus        83 Dsa~YyCa~~   92 (111)
T d1bd2d1          83 DSAVYFCAAM   92 (111)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccEEEEeecc
Confidence            9999999884

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.24  E-value=3.3e-06  Score=56.54  Aligned_cols=75  Identities=17%  Similarity=0.331  Sum_probs=50.4

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      |....+.+|++++|.|...+.....+.||+  .|+.+.      .          ...++....   .......|+|.++
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~---~~~~~~~L~i~~~   84 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH---ASPTLSTLTVTSA   84 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE---CSSSEEEEEECSC
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeec---ccccccccccccc
Confidence            445678899999999998766556799998  222211      0          012222221   1113567999999


Q ss_pred             CcCCCeEEEEEEeecc
Q psy15235        274 TMADRGNYYCHGNNVA  289 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~~  289 (323)
                      +.+|+|.|.|.+....
T Consensus        85 ~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          85 HPEDSGFYVCSALAGS  100 (118)
T ss_dssp             CGGGCEEEEEEEECSS
T ss_pred             ccccCceEEEEEecCC
Confidence            9999999999987644

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.24  E-value=2.7e-06  Score=55.75  Aligned_cols=70  Identities=16%  Similarity=0.337  Sum_probs=49.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++|+|.|......   ...+.||+.  |.....        ......++.    .....|+|.+++++|+
T Consensus         7 ~P~sl~~~~G~svtL~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           7 SPSSLSASVGDRITITCRASQGV---TSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eCCEEEECCCCCEEEEEEECCCC---CccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            46667788999999999987654   568999982  221110        111123333    4567899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|..
T Consensus        84 A~YyCa~   90 (107)
T d1tjgl1          84 ATYYCQQ   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             ceEEEEE
Confidence            9999977

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.23  E-value=2.7e-06  Score=56.16  Aligned_cols=76  Identities=18%  Similarity=0.248  Sum_probs=50.6

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      +....+.+|++++|.|.........+.||+.  |..+.           ....++....  ........|+|.+++.+|+
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~--~~~~~~~~L~i~~~~~~Ds   84 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATY--NKEATSFHLQKASVQESDS   84 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEC--BTTTTBCCEEEEEECGGGC
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeee--cCCCCEEeeeecCcCcCCC
Confidence            4456788999999999986554457999982  22110           0122333321  1222468899999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+....
T Consensus        85 a~YyCA~~~~~   95 (110)
T d1ac6a_          85 AVYYCALSGGN   95 (110)
T ss_dssp             EEEEEEEEETT
T ss_pred             cccceeecCCC
Confidence            99999887543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.23  E-value=1.4e-06  Score=56.91  Aligned_cols=70  Identities=16%  Similarity=0.379  Sum_probs=47.5

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCCe
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G  179 (323)
                      |....+.+|++|+|.|......   ...+.|||-  |.....        ......++.    .....|.|.+++.+|+|
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~---~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   81 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALP---NQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEA   81 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGG---GSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEeCCCC---CCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCc
Confidence            4456678999999999876544   457899982  221110        111122332    45678999999999999


Q ss_pred             eEEEEEE
Q psy15235        180 QYSCRLI  186 (323)
Q Consensus       180 ~y~C~~~  186 (323)
                      .|.|.+.
T Consensus        82 ~YyCA~~   88 (103)
T d8faba1          82 DYYCQAW   88 (103)
T ss_dssp             EEEEEEE
T ss_pred             eEEeeec
Confidence            9999873

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=8.3e-06  Score=51.78  Aligned_cols=68  Identities=12%  Similarity=0.251  Sum_probs=42.6

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-ec---eeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-QS---KDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~---~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..++.++|.|.+.++.|. ...++|.+||..+........... ..   -.....-.+...+...|+|.+ .+.
T Consensus        13 ~~~~~~tL~C~~~gFyP~-~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V-~H~   84 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQ-NITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQV-EHP   84 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSS-CCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEE-ECT
T ss_pred             CCCCCEEEEEEEeeEECC-CCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEE-EeC
Confidence            346789999999997655 579999999988754211111111 11   112222334455666899999 665

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.22  E-value=3.3e-06  Score=55.56  Aligned_cols=71  Identities=17%  Similarity=0.381  Sum_probs=49.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|.......  ...+.||+.  +.....        ......++.    .....|.|.+++.+|+
T Consensus         7 ~P~~~~v~~G~tv~l~C~~~~~~~--~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds   84 (108)
T d2fx7l1           7 SPGTQSLSPGERATLSCRASQSVG--NNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF   84 (108)
T ss_dssp             SSSEEEECTTCCEEEEEEESSCCG--GGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eCCeEEECCCCCEEEEEEeecCCC--CccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence            566777899999999998765421  457899983  321110        111233333    4456899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|.+
T Consensus        85 a~YyCa~   91 (108)
T d2fx7l1          85 AVYYCQQ   91 (108)
T ss_dssp             SEEEEEE
T ss_pred             EEEeeec
Confidence            9999988

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.22  E-value=8.3e-06  Score=54.02  Aligned_cols=76  Identities=20%  Similarity=0.349  Sum_probs=49.2

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee----c------cCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF----R------SQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~----~------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      .|....+.+|++++|.|..... ...+.||+.  +..+.    .      ........  .........|.|.+++.+|+
T Consensus         7 ~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           7 SPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAF--DSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             ECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEEC--CSSSSSEEEEEECSCCGGGC
T ss_pred             CCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEE--eecCCceeEEEECCCCHhHC
Confidence            3456778899999999998643 346999982  22111    0      01111111  11112456899999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      |.|.|.+....
T Consensus        84 a~YyCa~~~~~   94 (113)
T d1h5ba_          84 GTYFCAAEASS   94 (113)
T ss_dssp             EEEEEEEECSS
T ss_pred             EEEEEEecCCC
Confidence            99999987654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=7.3e-06  Score=54.47  Aligned_cols=72  Identities=26%  Similarity=0.411  Sum_probs=46.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc---------cccccCcEE------eceeEEEEeeeec
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE---------ATELSGRLT------QSKDSITIRKTTV  175 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~---------~~~~~~~~~------~~~~~l~i~~~~~  175 (323)
                      .|....+.+|++|+|.|.......  ...+.||+  .+.....         ......+..      .....|.|.++..
T Consensus         6 ~~~~v~v~~G~~VtL~C~~~~~~~--~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           6 AQTEISVVEKEDVTLDCVYETRDT--TYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             CCCEEEEETTCCEEECCEEECSCS--SCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             cCCeEEEeCCCCEEEEEEEcCCCc--CccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            455566889999999998655432  34689998  2321110         000111111      3356899999999


Q ss_pred             CCCeeEEEEEE
Q psy15235        176 DDAGQYSCRLI  186 (323)
Q Consensus       176 ~d~G~y~C~~~  186 (323)
                      +|+|.|.|.++
T Consensus        84 ~Dsg~YyCa~~   94 (114)
T d2ak4d1          84 VDSAVYFCALS   94 (114)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccCCCceEeCC
Confidence            99999999883

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.22  E-value=6.5e-06  Score=54.45  Aligned_cols=74  Identities=22%  Similarity=0.348  Sum_probs=48.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++|+|.|...+........+.|||.  +.....        ......++.    .....|.|.+++.+|+
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   85 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE   85 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC
Confidence            35567788999999999876642110246899982  221110        111223333    4567899999999999


Q ss_pred             eeEEEEEE
Q psy15235        179 GQYSCRLI  186 (323)
Q Consensus       179 G~y~C~~~  186 (323)
                      |.|.|.+.
T Consensus        86 a~YyCa~~   93 (112)
T d1lgva1          86 ADYYCSSY   93 (112)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEeee
Confidence            99999883

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.21  E-value=5.9e-06  Score=53.43  Aligned_cols=70  Identities=19%  Similarity=0.137  Sum_probs=43.9

Q ss_pred             EEeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        216 TVIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+..|+..+|.|.+.|+ |.. .+.|.+||..+........... .++ ....+.|.|.   .+|...|+|.+.+..
T Consensus        14 p~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~-~dgty~~~S~L~v~---~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          14 PLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAV-DGLSFQAFSYLNFT---PEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEE-TTTEEEEEEEEEEC---CCTTCCEEEEEEETT
T ss_pred             chhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeC-CCCcEEEEEEEEEe---cCCCCEEEEEEEeCC
Confidence            34568888999999886 543 7999999987643222111111 111 1234556554   345557999999986

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.21  E-value=4.8e-06  Score=54.95  Aligned_cols=71  Identities=14%  Similarity=0.196  Sum_probs=48.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc--------cccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE--------ATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~--------~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|......   ...+.|||  .|.....        ......++.      .....|.|.++.++
T Consensus         6 ~p~~~~~~~G~~vtl~C~~~~~~---~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           6 TEGQVALSEEDFLTIHCNYSASG---YPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             CCSEEEEETTEEEEECEEEECSS---CCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             CCCeEEECCCCCEEEEEEecCCC---CcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            56667788999999999876654   45799998  2321110        011122332      34578999999999


Q ss_pred             CCeeEEEEEE
Q psy15235        177 DAGQYSCRLI  186 (323)
Q Consensus       177 d~G~y~C~~~  186 (323)
                      |+|.|.|.++
T Consensus        83 Dsa~YyCA~~   92 (110)
T d1ac6a_          83 DSAVYYCALS   92 (110)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCcccceeec
Confidence            9999999883

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=5.5e-06  Score=54.25  Aligned_cols=70  Identities=20%  Similarity=0.432  Sum_probs=48.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec----cc----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI----TE----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~----~~----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|......   ...+.||+.  +...    ..    ......++.    .....|+|.+++.+|+
T Consensus         7 ~P~~l~~~~G~svtL~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           7 SPSYLVASPGETITINCRASKSI---SKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             cCCeEEecCCCCEEEEEEccCCc---CCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            46667788999999999987654   457999982  2211    00    001112222    4456899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|..
T Consensus        84 a~YyCA~   90 (108)
T d1jhll_          84 AMYICQQ   90 (108)
T ss_dssp             SEEEEEE
T ss_pred             eEEEEee
Confidence            9999977

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.20  E-value=4e-06  Score=55.51  Aligned_cols=75  Identities=19%  Similarity=0.310  Sum_probs=49.3

Q ss_pred             eeceeEEeeCCeEEEEEEEecC---CCCcEEEEECC--eee---e--------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS---PPPTVEWRIGN--DTY---F--------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~~~~--~~~---~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      .|....+.+|++++|.|...+.   ....+.||+..  ...   .        ....++....    ......|.|.+++
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~   81 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK----SGNSASLTISGLQ   81 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEECSCC
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC----CCCEeeEEeCcCc
Confidence            3456778899999999998653   22359999822  111   1        0112222221    1146889999999


Q ss_pred             cCCCeEEEEEEeecc
Q psy15235        275 MADRGNYYCHGNNVA  289 (323)
Q Consensus       275 ~~d~G~y~C~a~n~~  289 (323)
                      .+|+|.|.|.+.+..
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          82 AEDEADYYCSSYDGS   96 (112)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cccCEEEEEeeecCC
Confidence            999999999887544

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.20  E-value=5.3e-06  Score=54.78  Aligned_cols=72  Identities=17%  Similarity=0.340  Sum_probs=48.2

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc---c-----cccccCcEE----eceeEEEEeeeecCCCe
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT---E-----ATELSGRLT----QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~---~-----~~~~~~~~~----~~~~~l~i~~~~~~d~G  179 (323)
                      |....+.+|++++|.|...+..-. ...+.||+.  +....   .     .....+++.    .....|.|.+++.+|+|
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~-~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIG-NNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCC-TSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             CcceEeCCCCCEEEEEEECCcCCc-CCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCc
Confidence            445678899999999987653211 346999973  22111   0     111233443    44578999999999999


Q ss_pred             eEEEEEE
Q psy15235        180 QYSCRLI  186 (323)
Q Consensus       180 ~y~C~~~  186 (323)
                      .|.|.+.
T Consensus        86 ~YyCA~~   92 (111)
T d1rzfl1          86 DYYCGTW   92 (111)
T ss_dssp             EEEEEEE
T ss_pred             ceEEeec
Confidence            9999884

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.5e-06  Score=57.09  Aligned_cols=68  Identities=25%  Similarity=0.348  Sum_probs=46.1

Q ss_pred             EecCCcEEEEEEeecCCCC-CCceEEEEECCeeccc--------cccccCcEE---eceeEEEEeeeecCCCeeEEEEEE
Q psy15235        119 FEYRVPFTLKCNVTSPPPG-DDYQIVWYKGNKSITE--------ATELSGRLT---QSKDSITIRKTTVDDAGQYSCRLI  186 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~~~~~~~--------~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~  186 (323)
                      +..|+.++|.|........ ....+.|.+++..+..        ...+..+..   ..+.+|.|.+++.+|+|.|.|.+.
T Consensus         6 ~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V~   85 (105)
T d1dr9a1           6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVL   85 (105)
T ss_dssp             EETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEE
T ss_pred             EEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEEEE
Confidence            6679999999976543210 0247788887755422        112233333   335689999999999999999993

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.4e-06  Score=58.01  Aligned_cols=74  Identities=22%  Similarity=0.324  Sum_probs=48.7

Q ss_pred             eeceeEEeeCCeEEEEEEEecC-CCCcEEEEECC--ee------eecc-----------CCeeeeecCCCCCCcceeEEE
Q psy15235        211 LVETLTVIEGEKLRLECLVVGS-PPPTVEWRIGN--DT------YFRS-----------QGRIKLSEHPEKGTANSVLQI  270 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~--~~------~~~~-----------~~~~~~~~~~~~~~~~~~L~i  270 (323)
                      .|.+.++.+|++++|.|...+. ....+.|++..  ..      +...           ..++....  .  .....|+|
T Consensus         6 sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~--~--~~~~~L~I   81 (114)
T d1akjd_           6 SPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR--L--GDTFVLTL   81 (114)
T ss_dssp             ECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE--E--TTEEEEEE
T ss_pred             CCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC--C--CCChhcEE
Confidence            3456678889999999998544 34469999822  11      1001           11222221  1  13467999


Q ss_pred             eecCcCCCeEEEEEEeec
Q psy15235        271 DEATMADRGNYYCHGNNV  288 (323)
Q Consensus       271 ~~v~~~d~G~y~C~a~n~  288 (323)
                      .+++.+|+|.|.|.+...
T Consensus        82 ~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          82 SDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCGGGCEEEEEEEEET
T ss_pred             ccCCCCCCEEEeEeEcCC
Confidence            999999999999998854

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.19  E-value=3.3e-06  Score=55.42  Aligned_cols=70  Identities=14%  Similarity=0.368  Sum_probs=47.5

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc----c----cccccCcEE----eceeEEEEeeeecCCCe
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT----E----ATELSGRLT----QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~----~----~~~~~~~~~----~~~~~l~i~~~~~~d~G  179 (323)
                      |....+.+|++++|.|......   ...+.||+.  +....    .    ......++.    .....|.|.+++.+|+|
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~---~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   83 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIG---SRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEA   83 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGG---GSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEcCCCC---CcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCE
Confidence            4456688899999999865544   457999973  32111    0    111123332    45678999999999999


Q ss_pred             eEEEEEE
Q psy15235        180 QYSCRLI  186 (323)
Q Consensus       180 ~y~C~~~  186 (323)
                      .|.|.+.
T Consensus        84 vYyCA~~   90 (109)
T d1w72l1          84 DYYCQVW   90 (109)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9999884

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.19  E-value=4.9e-06  Score=54.91  Aligned_cols=73  Identities=21%  Similarity=0.282  Sum_probs=47.5

Q ss_pred             eceeEEeeCCeEEEEEEEecC-C---CCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        212 VETLTVIEGEKLRLECLVVGS-P---PPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~-p---~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      |....+.+|++++|.|..... +   ...+.||+.  |..+.           ....++...  .  ......|.|.+++
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~--~--~~~~~~L~I~~~~   83 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGT--G--SRTDFTLIIDPVE   83 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--C--SSSEEEEEESSCC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEe--c--CCCEEEEEEcccc
Confidence            445667889999999988432 1   224999983  32111           011222222  1  1246889999999


Q ss_pred             cCCCeEEEEEEeec
Q psy15235        275 MADRGNYYCHGNNV  288 (323)
Q Consensus       275 ~~d~G~y~C~a~n~  288 (323)
                      .+|+|.|.|.+.+.
T Consensus        84 ~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          84 ADDVATYYCQQTNE   97 (111)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             cccCccEEEeecCC
Confidence            99999999987754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.18  E-value=3.7e-06  Score=56.05  Aligned_cols=70  Identities=11%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCee---ccc------cccccC--cEE----eceeEEEEeeeec
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKS---ITE------ATELSG--RLT----QSKDSITIRKTTV  175 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~---~~~------~~~~~~--~~~----~~~~~l~i~~~~~  175 (323)
                      .+....+.+|++++|.|......   ...+.|||  .+..   +..      ......  +..    .....|+|.+++.
T Consensus         6 ~~~~v~v~~G~svtl~C~~~~~~---~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           6 PDARVTVSEGASLQLRCKYSYSA---TPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             CCSEEEEETTSCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             CCCeEEECCCCCEEEEEEEcCCC---CCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            45567788999999999987654   45788997  2321   110      000011  111    3456899999999


Q ss_pred             CCCeeEEEEE
Q psy15235        176 DDAGQYSCRL  185 (323)
Q Consensus       176 ~d~G~y~C~~  185 (323)
                      +|+|.|.|.+
T Consensus        83 ~Dsg~YyCa~   92 (115)
T d1i9ea_          83 SDSAVYFCAV   92 (115)
T ss_dssp             GGCEEEEEEE
T ss_pred             cccceecccc
Confidence            9999999988

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=7.4e-06  Score=52.73  Aligned_cols=67  Identities=18%  Similarity=0.256  Sum_probs=43.3

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEece---eEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK---DSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..|+.++|.|.+.++.|. ...|+|.+||..+...... .......   .......+..++.+.|+|.+ .+.
T Consensus        17 ~~~~~~tL~C~~~gFyP~-~i~v~W~~ng~~v~~~~~~-~~~~~~dgty~~~s~l~v~~~~~~~ytC~V-~H~   86 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPS-DIEVDLLKNGERIEKVEHS-DLSFSKDWSFYLLYYTEFTPTEKDEYACRV-NHV   86 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSS-CCEEEEEETTEECTTCEEC-CCEECTTSCEEEEEEEEECCCSSCCEEEEE-ECT
T ss_pred             cCCCCEEEEEEECccCCC-CcEEEEEECCEecCCcccc-ceecCCCCcEEEEEEeEECCCCCCEEEEEE-EeC
Confidence            468899999999998765 5799999999887541111 1111111   12222234456677999999 665

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.18  E-value=1.6e-06  Score=56.98  Aligned_cols=74  Identities=20%  Similarity=0.302  Sum_probs=48.8

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      .|+...+.+|++++|.|.........+.||+.  |..+.           ....++....  .  .....|.|.+++.+|
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~--~--~~~~~L~I~~l~~~D   80 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--S--GTTATLTISGAQPED   80 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--E--TTEEEEEETTCCGGG
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecC--C--CCEeeeeEcCccccC
Confidence            35567788999999999885443446999982  22111           0112233221  1  135789999999999


Q ss_pred             CeEEEEEEeec
Q psy15235        278 RGNYYCHGNNV  288 (323)
Q Consensus       278 ~G~y~C~a~n~  288 (323)
                      +|.|.|.+...
T Consensus        81 sa~YyCA~~~~   91 (108)
T d1nfde1          81 EAAYYCLSSYG   91 (108)
T ss_dssp             CSEEEEEEEET
T ss_pred             CceEEEEeecC
Confidence            99999987743

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.18  E-value=5.9e-06  Score=54.70  Aligned_cols=75  Identities=17%  Similarity=0.253  Sum_probs=49.9

Q ss_pred             eeceeEEeeCCeEEEEEEEecCC-CCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSP-PPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMA  276 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  276 (323)
                      .|....+.+|++++|.|...+.. ...+.||+.  |..+.           ....++.+.  .  ......|+|.+++.+
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~--~--~~~~~~L~i~~~~~~   79 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIA--E--DRKSSTLILHRATLR   79 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEEC--T--TSSEEEEEESSCCGG
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeec--c--cCCeeEEEEeecccc
Confidence            34566788999999999986543 345999982  22211           111222222  1  124578999999999


Q ss_pred             CCeEEEEEEeecc
Q psy15235        277 DRGNYYCHGNNVA  289 (323)
Q Consensus       277 d~G~y~C~a~n~~  289 (323)
                      |+|.|.|.+....
T Consensus        80 Dsa~YyCa~~~~~   92 (112)
T d1kgcd1          80 DAAVYYCILPLAG   92 (112)
T ss_dssp             GCEEEEEECCCCS
T ss_pred             cceeEeeeEecCC
Confidence            9999999876544

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.18  E-value=4.4e-06  Score=55.98  Aligned_cols=76  Identities=21%  Similarity=0.324  Sum_probs=49.9

Q ss_pred             eeceeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      .+....+.+|++++|.|...+..  ...+.|++.  |+.+.           ...+++.....  .......|.|.+++.
T Consensus         7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~--~~~~~~~L~i~~~~~   84 (120)
T d1hxma1           7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID--IAKNLAVLKILAPSE   84 (120)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE--GGGTEEEEEESSCCG
T ss_pred             cCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeecc--ccccceecccccccc
Confidence            34456788999999999997543  346999972  22111           01123333311  111357899999999


Q ss_pred             CCCeEEEEEEeec
Q psy15235        276 ADRGNYYCHGNNV  288 (323)
Q Consensus       276 ~d~G~y~C~a~n~  288 (323)
                      +|+|.|.|.....
T Consensus        85 ~Dsa~YyCA~~~~   97 (120)
T d1hxma1          85 RDEGSYYCACDTL   97 (120)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cCCceeecCcccC
Confidence            9999999987654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.8e-06  Score=57.48  Aligned_cols=73  Identities=19%  Similarity=0.289  Sum_probs=47.4

Q ss_pred             eEEeeCCeEEEEEEEecC--CCCcEEEEEC--Cee---eec-----------cCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235        215 LTVIEGEKLRLECLVVGS--PPPTVEWRIG--NDT---YFR-----------SQGRIKLSEHPEKGTANSVLQIDEATMA  276 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~--p~~~~~W~~~--~~~---~~~-----------~~~~~~~~~~~~~~~~~~~L~i~~v~~~  276 (323)
                      ..+.+|++++|.|...+.  ....+.|++.  +..   +..           ..+++.+....  .....+|+|.+++.+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~Lti~~l~~~   86 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYH--DHGLLRVRMVNLQVE   86 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEET--TTTEEEEEECSCCGG
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEEC--CCCEEEEEEccCCcc
Confidence            456789999999988532  3456899973  211   110           11233333211  123477999999999


Q ss_pred             CCeEEEEEEeecc
Q psy15235        277 DRGNYYCHGNNVA  289 (323)
Q Consensus       277 d~G~y~C~a~n~~  289 (323)
                      |+|.|.|.+....
T Consensus        87 Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          87 DSGLYQCVIYQPP   99 (113)
T ss_dssp             GCEEEEEEECCTT
T ss_pred             cCceEEEEEECCC
Confidence            9999999986544

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.17  E-value=2.8e-06  Score=56.60  Aligned_cols=71  Identities=17%  Similarity=0.271  Sum_probs=48.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc---c------cccccCcEE------eceeEEEEeeeec
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT---E------ATELSGRLT------QSKDSITIRKTTV  175 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~---~------~~~~~~~~~------~~~~~l~i~~~~~  175 (323)
                      .|....+.+|++++|.|......   ...+.|||-  |....   .      ......++.      .....|+|.+++.
T Consensus         6 ~p~~v~~~~G~~vtl~C~~s~~~---~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           6 LGSHVSVSEGALVLLRCNYSSSV---PPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             SCSEEEEETTSCEEECCEEECSS---CCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             CCCeEEEcCCCCEEEEEEeCCCC---ceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            45667788999999999987654   467999982  22111   0      001111222      2345799999999


Q ss_pred             CCCeeEEEEEE
Q psy15235        176 DDAGQYSCRLI  186 (323)
Q Consensus       176 ~d~G~y~C~~~  186 (323)
                      +|+|.|.|.++
T Consensus        83 ~Dsa~YyCa~~   93 (115)
T d1j8hd1          83 SDAAEYFCAVS   93 (115)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cCCccceeeec
Confidence            99999999993

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=6.1e-06  Score=53.16  Aligned_cols=68  Identities=24%  Similarity=0.294  Sum_probs=42.3

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..|+.++|.|.+.++.|. ...|+|.++|..+...........  ..-.......+...+.+.|+|.+ .+.
T Consensus        16 ~~~~~~tL~C~v~gf~P~-~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V-~H~   85 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPP-HIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRV-KHD   85 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSS-CCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEE-ECT
T ss_pred             cCCCcEEEEEEEEEEECC-CcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEE-EeC
Confidence            458889999999998765 579999999988754111111111  11111222233445667899999 665

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.17  E-value=9.9e-06  Score=53.90  Aligned_cols=72  Identities=19%  Similarity=0.412  Sum_probs=47.7

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc----c-----cccccCcEE------eceeEEEEeeeec
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT----E-----ATELSGRLT------QSKDSITIRKTTV  175 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~----~-----~~~~~~~~~------~~~~~l~i~~~~~  175 (323)
                      .|....+.+|++|+|.|.......  ...+.|||.  +....    .     .....+++.      .....|.|.+++.
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~--~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDS--SYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCS--SCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCC--CCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            455566889999999998754332  457899982  22111    0     011122332      2356799999999


Q ss_pred             CCCeeEEEEEE
Q psy15235        176 DDAGQYSCRLI  186 (323)
Q Consensus       176 ~d~G~y~C~~~  186 (323)
                      +|+|.|.|.+.
T Consensus        83 ~Dsa~YyCa~~   93 (115)
T d1fo0a_          83 EDSAVYFCAMR   93 (115)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccccccceee
Confidence            99999999984

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.2e-05  Score=51.48  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=50.9

Q ss_pred             cceeeeeceeEEeeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEE
Q psy15235        206 KPTAKLVETLTVIEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHG  285 (323)
Q Consensus       206 ~p~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a  285 (323)
                      +|.+...+...+..|++++|.|... .....+.++++|.......   ..............+.|.+++.+|+|.|+|..
T Consensus         4 kPsLsa~P~~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~---~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           4 KPTLSAQPSPVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQC---LNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECS-SCCSEEEEEEC------CE---EEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CCEEEeeCCCccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEe---eeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence            6777766677899999999999874 2355788888776432110   00000111113567999999999999999987


Q ss_pred             eecc
Q psy15235        286 NNVA  289 (323)
Q Consensus       286 ~n~~  289 (323)
                      ....
T Consensus        80 ~~~~   83 (98)
T d1ugna2          80 YDSN   83 (98)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            6554

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.17  E-value=1.2e-05  Score=52.69  Aligned_cols=74  Identities=26%  Similarity=0.379  Sum_probs=51.3

Q ss_pred             eeEEeeCCeEEEEEEEecCCCC--cEEEEEC--Ceeee---------------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPP--TVEWRIG--NDTYF---------------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      ...+++|+++.|+|.+.|..-.  .+.|+|.  |+.+.               .-.+|+.++.  +.......|.|.+++
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~--D~s~~~~~L~i~~L~   85 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQ--GNAKNTAYLQMDSLK   85 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEE--CSSTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEec--ccCCcceecccccCC
Confidence            3567889999999999887433  4889873  22111               1124666663  333346689999999


Q ss_pred             cCCCeEEEEEEeecc
Q psy15235        275 MADRGNYYCHGNNVA  289 (323)
Q Consensus       275 ~~d~G~y~C~a~n~~  289 (323)
                      .+|+..|.|......
T Consensus        86 ~eDtA~YYCAr~~~~  100 (119)
T d1kxvc_          86 PDDTAMYYCKPSLRY  100 (119)
T ss_dssp             GGGCEEEEEEEEESS
T ss_pred             cCCcceEeeeecccc
Confidence            999999999766544

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=8.9e-06  Score=53.66  Aligned_cols=89  Identities=12%  Similarity=0.139  Sum_probs=48.6

Q ss_pred             eEEeeCCeEEEEEEEecCCC---CcEEEE--ECCeeee----ccCCeeeeecCCCCC-----CcceeEEEeecCcCCCeE
Q psy15235        215 LTVIEGEKLRLECLVVGSPP---PTVEWR--IGNDTYF----RSQGRIKLSEHPEKG-----TANSVLQIDEATMADRGN  280 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~---~~~~W~--~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~  280 (323)
                      ..+..|++++|.|.....+.   ..+.|+  +++....    ....+..........     .....|+|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            45678999999999854322   234443  4333211    000000000000000     135779999999999999


Q ss_pred             EEEEEeecccCCCCC---ceeEEEEEEc
Q psy15235        281 YYCHGNNVATRNSQP---NEAFVYVRVK  305 (323)
Q Consensus       281 y~C~a~n~~g~~~~~---~~~~~~l~v~  305 (323)
                      |.|.+......  +.   ....+.|.|.
T Consensus        84 Y~C~V~~~~~~--~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          84 YQCIIHHKKPT--GMIRIHQMNSELSVL  109 (110)
T ss_dssp             EEEEEEEECSS--SEEEEEEEEEEEEEE
T ss_pred             EEEEEEecCCC--ceEEEEcceEEEEEE
Confidence            99999765422  11   2445556553

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.17  E-value=7.1e-06  Score=54.48  Aligned_cols=69  Identities=23%  Similarity=0.413  Sum_probs=47.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc---c-----cccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT---E-----ATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~---~-----~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++++|.|...+..    ..+.||+  .|....   .     ......++.      .....|.|.++..+
T Consensus         6 ~P~~~~~~~G~svtl~C~~s~~~----~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (115)
T d1ogad1           6 SPQFLSIQEGENLTVYCNSSSVF----SSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG   81 (115)
T ss_dssp             ECSEEEEETTCCEEEEEECSSCC----SCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred             CCCeEEECCCCCEEEEEEECCCC----ceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence            45667788999999999876543    4799998  222110   0     011122221      45678999999999


Q ss_pred             CCeeEEEEE
Q psy15235        177 DAGQYSCRL  185 (323)
Q Consensus       177 d~G~y~C~~  185 (323)
                      |+|.|.|.+
T Consensus        82 Dsa~YyCa~   90 (115)
T d1ogad1          82 DTGLYLCAG   90 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             ceeeEcccc
Confidence            999999988

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.2e-05  Score=51.33  Aligned_cols=66  Identities=20%  Similarity=0.375  Sum_probs=45.2

Q ss_pred             eCCeEEEEEEEec-CCCCcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVG-SPPPTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++.++|.|.+.| +|.+.+.|++|+..+.....  .......++  ...+.|.+.   ..+...|+|.+.+..
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~--~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~   83 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINT--TVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGH   83 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEE--EEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETT
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccce--eeEecCCCccEEEEEEEEcc---CCccceEEEEEEecC
Confidence            5788999999976 68889999999988753322  222112222  234566665   345678999999987

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.5e-06  Score=56.81  Aligned_cols=73  Identities=16%  Similarity=0.296  Sum_probs=46.9

Q ss_pred             eCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        219 EGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      .++.++|.|.+.|. |. ..+.|++||..+..............++  ...+.|+|..-.......|+|.+.+....
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   94 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS   94 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTST
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCC
Confidence            46689999999775 54 4799999998865321111100001111  24567888776666666899999997643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.16  E-value=1.8e-06  Score=56.68  Aligned_cols=70  Identities=19%  Similarity=0.364  Sum_probs=48.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc----c----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT----E----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~----~----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++|+|.|......   ...+.||+.  |....    .    ......++.    .....|.|.+++.+|+
T Consensus         7 sP~s~~~~~G~~vtl~C~~s~~~---~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           7 TPVSLAASLGDRVTISCRASQDI---NNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             ESTTCCBCSSSCCEEEEEESSCC---TTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             cCCEEEECCCCCEEEEEEcCCCc---CCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            45556678899999999876655   457999972  22111    0    111122332    4567899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|..
T Consensus        84 a~YyCa~   90 (107)
T d3cx5k1          84 ATYFCQH   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             CcEEeee
Confidence            9999977

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.16  E-value=4.3e-06  Score=55.59  Aligned_cols=76  Identities=22%  Similarity=0.383  Sum_probs=49.8

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|...+. ...+.||+.  |..+.           ....++....  ........|+|.+++.+|+
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~~~~~Ds   83 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQF--GDARKDSSLHITAAQPGDT   83 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEE--CTTSSEEEEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeeccccccc--ccccceeeeeecCCCccce
Confidence            446678899999999998654 346999982  21110           0112222221  1222468899999999999


Q ss_pred             eEEEEEEeeccc
Q psy15235        279 GNYYCHGNNVAT  290 (323)
Q Consensus       279 G~y~C~a~n~~g  290 (323)
                      |.|.|.+....+
T Consensus        84 a~YyCa~~~~~~   95 (115)
T d1ogad1          84 GLYLCAGAGSQG   95 (115)
T ss_dssp             EEEEEEEECTTS
T ss_pred             eeEcccccCCCC
Confidence            999998875543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.16  E-value=8.2e-06  Score=53.74  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=48.5

Q ss_pred             eceeEEeeCCeEEEEEEEecC-C---CCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        212 VETLTVIEGEKLRLECLVVGS-P---PPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~-p---~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      |....+.+|++++|.|...+. .   ...+.||+.  +....           ....++....  .  .....|+|.+++
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~--~--~~~~~L~I~~~~   83 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSG--S--GTDFTLNIHPVE   83 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--E--TTEEEEEESSCC
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEec--C--CCchhccccccc
Confidence            446678899999999988542 2   224999983  22211           0112333321  1  135789999999


Q ss_pred             cCCCeEEEEEEeecc
Q psy15235        275 MADRGNYYCHGNNVA  289 (323)
Q Consensus       275 ~~d~G~y~C~a~n~~  289 (323)
                      .+|++.|.|.+.+..
T Consensus        84 ~~DsA~YyCa~~~~~   98 (111)
T d2gsia1          84 EEDAATYYCSHIREL   98 (111)
T ss_dssp             GGGCEEEEEEECSSS
T ss_pred             ccCCceEEEEECCCC
Confidence            999999999876544

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.15  E-value=3.2e-06  Score=55.45  Aligned_cols=71  Identities=17%  Similarity=0.386  Sum_probs=48.9

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc----c----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT----E----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~----~----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|......   ...+.|||  .|....    .    .....+++.    .....|.|.+++++|+
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~---~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Ds   81 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLP---KNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE   81 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGG---GSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred             CCCeeEECCCCCEEEEEECCCCC---CccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCC
Confidence            35566788999999999875444   34689998  232111    0    112234444    4457899999999999


Q ss_pred             eeEEEEEE
Q psy15235        179 GQYSCRLI  186 (323)
Q Consensus       179 G~y~C~~~  186 (323)
                      |.|.|.+.
T Consensus        82 a~YyCA~~   89 (108)
T d1nfde1          82 AAYYCLSS   89 (108)
T ss_dssp             SEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999883

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.15  E-value=3e-06  Score=55.77  Aligned_cols=73  Identities=21%  Similarity=0.299  Sum_probs=47.7

Q ss_pred             eceeEEeeCCeEEEEEEEecC-CCCcEEEEEC--Cee---ee--------ccCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGS-PPPTVEWRIG--NDT---YF--------RSQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~--~~~---~~--------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      |....+.+|++++|.|...+. ....+.||+.  +..   +.        ....++....  .  .....|+|.+++.+|
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~--~--~~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSG--S--GTDFTLTISRLEPED   83 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--E--TTEEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeec--C--CCEEEEEehHheecc
Confidence            445668899999999998544 2346899983  221   11        0112222221  1  135789999999999


Q ss_pred             CeEEEEEEeec
Q psy15235        278 RGNYYCHGNNV  288 (323)
Q Consensus       278 ~G~y~C~a~n~  288 (323)
                      +|.|.|.+.+.
T Consensus        84 sa~YyCa~~~~   94 (108)
T d2fx7l1          84 FAVYYCQQYGQ   94 (108)
T ss_dssp             CSEEEEEECSS
T ss_pred             cEEEeeecCCC
Confidence            99999987643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.4e-06  Score=55.85  Aligned_cols=68  Identities=15%  Similarity=0.298  Sum_probs=43.1

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-cCcEE------eceeEEEEeeeecCCCeeEEEEEEcCCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-SGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPKS  190 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~~  190 (323)
                      .++.++|.|.+.++.|. ...|.|++||..+...... .....      .....|.|..-.......|+|.+ .+..
T Consensus        18 ~~~~vtL~Clv~~f~P~-~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V-~H~~   92 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPE-DISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRA-VHEA   92 (105)
T ss_dssp             SSCCEEEEEEEEEEBSS-CCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEE-ECTT
T ss_pred             cCCcEEEEEEEEeeeCC-CcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEE-EECC
Confidence            46789999999997765 5799999999887542111 11111      22334555444334455899999 6653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.14  E-value=7.3e-06  Score=55.06  Aligned_cols=74  Identities=26%  Similarity=0.443  Sum_probs=49.2

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee-------------c---cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF-------------R---SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~-------------~---~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      +....+|++++|.|.+.|..  ...+.||+.  ++.+.             .   ..+++.+....  ......|+|.++
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~--~~~~~~L~i~~l   87 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP--ETSTSTLTIHNV   87 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET--TTTEEEEEECSC
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeec--cccceeeccccc
Confidence            45567899999999998753  346999982  21111             0   12344444211  113567999999


Q ss_pred             CcCCCeEEEEEEeecc
Q psy15235        274 TMADRGNYYCHGNNVA  289 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~~  289 (323)
                      +.+|++.|.|.+....
T Consensus        88 ~~~Dsa~YyCA~~~~~  103 (123)
T d1hxmb1          88 EKQDIATYYCALWEAQ  103 (123)
T ss_dssp             CGGGCEEEEEEEEEEC
T ss_pred             ccccCcEEEEeeeCCC
Confidence            9999999999987644

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.7e-05  Score=50.48  Aligned_cols=68  Identities=22%  Similarity=0.349  Sum_probs=43.1

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .|+.++|.|.+.|+ |.. .++|.+||..+... ....... ..++ .........+..++...|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~-~~~~~~~-~~~~-t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPE-LRGDVLH-NGNG-TYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCS-EEEEEEE-TTTT-EEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCc-EEeeeec-CCCC-eEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            57889999999885 544 79999999876422 1111111 1111 22333334445566678999999987

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.13  E-value=1.2e-05  Score=52.41  Aligned_cols=74  Identities=19%  Similarity=0.277  Sum_probs=51.1

Q ss_pred             eeEEeeCCeEEEEEEEecCCCC--cEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPP--TVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-.  .+.|++  .|+.+.      .          -.+|++++.  +.......|.|+++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSr--D~s~nt~~L~~~sL   86 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISR--DNAKNSLYLQMSKV   86 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEE--CSSSCEEEEEECSC
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEee--cCccceeecccccc
Confidence            4567889999999999887433  588886  232211      0          124556663  33334577999999


Q ss_pred             CcCCCeEEEEEEeecc
Q psy15235        274 TMADRGNYYCHGNNVA  289 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~~  289 (323)
                      +.+|++.|.|......
T Consensus        87 ~~eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          87 RSEDTALYYCARLHYY  102 (118)
T ss_dssp             CGGGCEEEEEEEEETT
T ss_pred             CCCcceEEEeeEecCC
Confidence            9999999999876544

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.13  E-value=7.9e-06  Score=53.24  Aligned_cols=74  Identities=18%  Similarity=0.332  Sum_probs=50.1

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEE--CCeeee----------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRI--GNDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++  .|+.+.                .-.+|+.++.  +.......|.|+++
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~--D~s~~t~~L~i~~L   86 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTA--DTSTNIAYMELSSL   86 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeec--ccccceEEEeeccc
Confidence            455778999999999988632  3588887  222211                1234555552  22223567999999


Q ss_pred             CcCCCeEEEEEEeecc
Q psy15235        274 TMADRGNYYCHGNNVA  289 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~~  289 (323)
                      +.+|++.|.|......
T Consensus        87 ~~eDtAvYYCA~~~~~  102 (117)
T d1iqdb1          87 RSDDTAVYYCAVPDPD  102 (117)
T ss_dssp             CGGGCEEEEEEECSSS
T ss_pred             CcCcceEEEEeEcCCC
Confidence            9999999999876543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=7.7e-06  Score=53.58  Aligned_cols=68  Identities=19%  Similarity=0.339  Sum_probs=46.0

Q ss_pred             eeEEecCCcEEEEEEeecC--CCCCCceEEEEEC--Cee----ccc-------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSP--PPGDDYQIVWYKG--NKS----ITE-------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~--~~~~~~~i~W~~~--~~~----~~~-------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      -..+.+|++++|.|...+.  .   .....|+|.  |..    +..       .....+|+.      .....|+|.+++
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~---~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~   80 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYA---NSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQ   80 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHT---TSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCcCCCCCCEEEEEEECCCCcc---CCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccc
Confidence            3457789999999998653  3   457889983  321    111       112234544      234678999999


Q ss_pred             cCCCeeEEEEEE
Q psy15235        175 VDDAGQYSCRLI  186 (323)
Q Consensus       175 ~~d~G~y~C~~~  186 (323)
                      .+|+|.|.|.+.
T Consensus        81 ~eDsa~YyCa~~   92 (110)
T d1u9ka_          81 VTDSGLYRCVIY   92 (110)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCCEEEEEEEe
Confidence            999999999984

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=3.8e-06  Score=56.22  Aligned_cols=79  Identities=11%  Similarity=0.081  Sum_probs=50.4

Q ss_pred             ceEEEeeceEEecCCcEEEEEEec-c-------CceEEEEEcCcccee----e--------ccCcceEEEeeeeCCeEEE
Q psy15235         23 GKITYFGDTEIMEGAPINISCILT-I-------FEQVKWQLNGRNINQ----S--------SVDSGFAATANLTEDNFKY   82 (323)
Q Consensus        23 ~~i~~~~~~~v~~G~~v~L~C~~~-~-------~~~v~W~~~g~~~~~----~--------~~~~~~~~~~~~~~~~~~l   82 (323)
                      +.+..|..+.+.+|++|.|.|... |       ...+.|++.......    .        ....+..+..+...+++.|
T Consensus         2 w~V~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   81 (118)
T d1qfoa_           2 WGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNL   81 (118)
T ss_dssp             CEEECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCE
T ss_pred             cEEECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEE
Confidence            456778889999999999999843 1       124567774321111    0        1223333444445677778


Q ss_pred             EEeeccc--CcceEEEeeccC
Q psy15235         83 SIHEAIL--ESGYVQSSLFIP  101 (323)
Q Consensus        83 ~i~~~~~--~G~Y~C~~~~~~  101 (323)
                      .|.+++.  +|.|.|.+....
T Consensus        82 ~I~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          82 LLKDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             EECSCCGGGCEEEEEEEECC-
T ss_pred             EECCCChhHCEEEEEEEEeCC
Confidence            8887765  999999996543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.1e-06  Score=54.86  Aligned_cols=71  Identities=20%  Similarity=0.189  Sum_probs=48.1

Q ss_pred             eEEeeCCeEEEEEEEecCCC----CcEEEEECCeeeec-c----------CCeeeeecCCCCCCcceeEEEeecCcCCCe
Q psy15235        215 LTVIEGEKLRLECLVVGSPP----PTVEWRIGNDTYFR-S----------QGRIKLSEHPEKGTANSVLQIDEATMADRG  279 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~----~~~~W~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  279 (323)
                      ..+..|++++|.|.......    ..+.|.+++..+.. .          ..+....  .   ....+|.|.+++.+|+|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~--~---~g~~sL~I~~v~~~D~G   78 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD--I---TNNLSIVILALRPSDEG   78 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE--S---TTTTEEEECSCCGGGCE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeec--c---CCcEEEEECcCChHHCe
Confidence            45678999999998753221    24788887765421 1          1122221  1   12568999999999999


Q ss_pred             EEEEEEeeccc
Q psy15235        280 NYYCHGNNVAT  290 (323)
Q Consensus       280 ~y~C~a~n~~g  290 (323)
                      .|.|.+.+..+
T Consensus        79 ~Y~C~V~~~~~   89 (105)
T d1dr9a1          79 TYECVVLKYEK   89 (105)
T ss_dssp             EEEEEEEECCT
T ss_pred             EEEEEEEeCCC
Confidence            99999987653

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.11  E-value=1.3e-05  Score=51.13  Aligned_cols=73  Identities=19%  Similarity=0.184  Sum_probs=48.6

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE--eceeEEEEeeeecCCCeeEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT--QSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      |.+...|. .++..|.+|+|.|......    ..+.++|+|...... .......  .....+.|.+++..|+|.|+|..
T Consensus         3 PsLsa~P~-~~V~~G~~VTl~C~~~~~~----~~f~L~keg~~~~~~-~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   76 (96)
T d1nkra1           3 PSLLAHPG-PLVKSEETVILQCWSDVMF----EHFLLHREGMFNDTL-RLIGEHHDGVSKANFSISRMTQDLAGTYRCYG   76 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEESSCC----SEEEEEEESSSCEEE-EEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CEEEeeCC-CccCCCCcEEEEECCCCCC----CEEEEEECCCcCCce-eeeeeecCCceEEEEEEcccCcccCeEEEEEE
Confidence            33444442 4577899999999876543    589999987543210 0011111  34567999999999999999987


Q ss_pred             E
Q psy15235        186 I  186 (323)
Q Consensus       186 ~  186 (323)
                      .
T Consensus        77 ~   77 (96)
T d1nkra1          77 S   77 (96)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.11  E-value=1.4e-05  Score=52.76  Aligned_cols=71  Identities=21%  Similarity=0.383  Sum_probs=48.1

Q ss_pred             eEEeeCCeEEEEEEEecCC----CCcEEEEEC--Ceeee---------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        215 LTVIEGEKLRLECLVVGSP----PPTVEWRIG--NDTYF---------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p----~~~~~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ..+++|++++|.|.+.|..    ...+.|++.  |+.+.               .-.+|+.++.  +.......|+|.++
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~--d~s~~~~~L~i~~l   87 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITK--DASKKQVVLTLTNL   87 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEEC--CTTTTEEEEEEESC
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceec--ccccceeeeeEEee
Confidence            4567899999999997752    235889973  22211               0124566652  22224578999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|++.|.|....
T Consensus        88 ~~eDsAvYyCAr~~  101 (120)
T d2agjh1          88 DPVDTATYYCARTS  101 (120)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             eeccceEEeeEecC
Confidence            99999999996443

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.11  E-value=6.3e-06  Score=54.36  Aligned_cols=70  Identities=20%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec---c-c-------cccccCcEE-----eceeEEEEeeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI---T-E-------ATELSGRLT-----QSKDSITIRKTT  174 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~---~-~-------~~~~~~~~~-----~~~~~l~i~~~~  174 (323)
                      .|...++.+|++++|.|...+.    ...+.|||  .|...   . .       ......++.     .....|+|.++.
T Consensus         7 ~P~~~~~~~G~~vtl~C~~s~~----~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           7 SPRNKVAVTGEKVTLSCQQTNN----HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             ECSEEEECTTCCEEEEEEESSC----CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             eCCeEEEcCCCCEEEEEEECCC----cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            4667778899999999987653    35799998  23211   0 0       011122222     345789999999


Q ss_pred             cCCCeeEEEEEE
Q psy15235        175 VDDAGQYSCRLI  186 (323)
Q Consensus       175 ~~d~G~y~C~~~  186 (323)
                      .+|+|.|.|.+.
T Consensus        83 ~~Dsa~YyCa~~   94 (110)
T d2aq2a1          83 PSQTSVYFCASG   94 (110)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HhhCEEEEEeeC
Confidence            999999999883

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.4e-06  Score=55.00  Aligned_cols=71  Identities=17%  Similarity=0.293  Sum_probs=46.5

Q ss_pred             eCCeEEEEEEEec-CCCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVG-SPPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.+++|.|.+.| +|.. .++|+++|..+...................+.|+|..-.......|+|.+.+..
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            4567999999987 4655 699999998875322211111101111245678887766566677999999976

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.11  E-value=1.5e-05  Score=51.06  Aligned_cols=67  Identities=15%  Similarity=0.398  Sum_probs=40.6

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEe---ceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQ---SKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .++..+|.|.+.++.|. ...|+|++||..+............   .-.......+...+...|+|.+ .+.
T Consensus        17 ~~~~~tL~C~v~~F~P~-~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V-~H~   86 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPG-SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQV-EHP   86 (98)
T ss_dssp             ----CEEEEEEEEEBSS-CCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEE-ECT
T ss_pred             cCCceEEEEEEeeeECC-CcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEE-EEC
Confidence            46677899999997765 5799999999887542222222221   1122223344566777999999 665

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.10  E-value=9.3e-06  Score=53.60  Aligned_cols=71  Identities=21%  Similarity=0.344  Sum_probs=46.3

Q ss_pred             eceeEEeeCCeEEEEEEEecC-----CCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        212 VETLTVIEGEKLRLECLVVGS-----PPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~-----p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      |+...+.+|++++|.|...+.     ....+.||+.  |....           ....++....    ......|+|.++
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~----s~~~~~L~Is~~   83 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSG----SGTAFTLRISRV   83 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----CSSEEEEEESSC
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeec----CCCEEEEEECCc
Confidence            446678899999999998653     1335999973  22111           1112222221    124678999999


Q ss_pred             CcCCCeEEEEEEe
Q psy15235        274 TMADRGNYYCHGN  286 (323)
Q Consensus       274 ~~~d~G~y~C~a~  286 (323)
                      +.+|++.|.|...
T Consensus        84 ~~~DsAvYyCa~~   96 (112)
T d1mjul1          84 EAEDVGVYYCLQH   96 (112)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cccCCceEEEEeC
Confidence            9999999999544

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.10  E-value=1.2e-05  Score=52.31  Aligned_cols=74  Identities=24%  Similarity=0.346  Sum_probs=50.4

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee---------------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF---------------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      ...+++|++++|+|.+.|..-  -.+.|++.  |+.+.               .-.+|+.++.  +.......|+|++++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~--D~s~~~~~L~i~~L~   86 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLV--NTSKNQFSLRLSSVT   86 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEE--ETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeec--ccchhhhhccccccc
Confidence            456788999999999988643  35889872  22111               1124555552  222346779999999


Q ss_pred             cCCCeEEEEEEeecc
Q psy15235        275 MADRGNYYCHGNNVA  289 (323)
Q Consensus       275 ~~d~G~y~C~a~n~~  289 (323)
                      .+|++.|.|......
T Consensus        87 ~eDtAvYyCAr~~~~  101 (116)
T d7fabh1          87 AADTAVYYCARNLIA  101 (116)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cccceEEEeeeecCC
Confidence            999999999765433

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.3e-06  Score=54.29  Aligned_cols=71  Identities=18%  Similarity=0.328  Sum_probs=46.3

Q ss_pred             eCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++.++|.|.+.|+ |. ..|.|++||..+.............++ ....+.|+|..-..+....|+|.|.+..
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35678999999776 54 379999999876532111111111111 1345778887776666778999999976

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=6.9e-06  Score=53.92  Aligned_cols=71  Identities=20%  Similarity=0.302  Sum_probs=47.7

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc--------cccccCcEE----eceeEEEEeeeecCCCeeE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE--------ATELSGRLT----QSKDSITIRKTTVDDAGQY  181 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~G~y  181 (323)
                      ...+.+|++++|.|...+........+.||+  .|.....        .....+++.    .....|.|.+++.+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            4567899999999998653311023488997  2322111        112234444    5567899999999999999


Q ss_pred             EEEEE
Q psy15235        182 SCRLI  186 (323)
Q Consensus       182 ~C~~~  186 (323)
                      .|...
T Consensus        89 yCa~~   93 (110)
T d1oaql_          89 FCALW   93 (110)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            99884

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.09  E-value=1.2e-05  Score=53.20  Aligned_cols=73  Identities=21%  Similarity=0.322  Sum_probs=47.6

Q ss_pred             eceeEEeeCCeEEEEEEEecC-----CCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        212 VETLTVIEGEKLRLECLVVGS-----PPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~-----p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      |....+.+|++++|.|...+.     ....+.||+.  |....           ....++....    ......|+|.++
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~----~~~~~~L~I~~~   84 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG----SGTDFTLKISRV   84 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----CSSEEEEEESSC
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec----cCCcccCccCCC
Confidence            445678899999999998543     2246999973  21110           1112222221    124578999999


Q ss_pred             CcCCCeEEEEEEeec
Q psy15235        274 TMADRGNYYCHGNNV  288 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~  288 (323)
                      +.+|++.|.|...+.
T Consensus        85 ~~~DsavYyCa~~~~   99 (113)
T d1n4xl_          85 EAEDLGIYYCFQGSH   99 (113)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CcccCEEEEEEECCC
Confidence            999999999976543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.09  E-value=1.5e-05  Score=52.87  Aligned_cols=70  Identities=16%  Similarity=0.339  Sum_probs=47.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-----------cccccCcEE-----eceeEEEEeeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-----------ATELSGRLT-----QSKDSITIRKTT  174 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-----------~~~~~~~~~-----~~~~~l~i~~~~  174 (323)
                      .|....+.+|++|+|.|.....    ...+.||+.  +.....           ......++.     .....|.|.++.
T Consensus         5 sP~~~~~~~G~svtl~C~~s~~----~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQNLN----HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   80 (114)
T ss_dssp             SCSEEEEETTCCEEECCEECSC----CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEecC----CCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence            4666778899999999997543    358999982  221100           011112222     334679999999


Q ss_pred             cCCCeeEEEEEE
Q psy15235        175 VDDAGQYSCRLI  186 (323)
Q Consensus       175 ~~d~G~y~C~~~  186 (323)
                      .+|+|.|.|.+.
T Consensus        81 ~~DSa~YyCa~~   92 (114)
T d1ogae1          81 KNPTAFYLCASS   92 (114)
T ss_dssp             SCCCEEEEEEEE
T ss_pred             cCCceeEEEeec
Confidence            999999999883

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.08  E-value=8e-06  Score=54.14  Aligned_cols=70  Identities=20%  Similarity=0.466  Sum_probs=47.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc-----------cccccCcEE-----eceeEEEEeeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE-----------ATELSGRLT-----QSKDSITIRKTT  174 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~-----------~~~~~~~~~-----~~~~~l~i~~~~  174 (323)
                      .|...++.+|++++|.|...+..    ..+.|||  .+.....           ......++.     .....|+|.++.
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~~~----~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (113)
T d2ntsp1           5 TPRYLIKTRGQQVTLSCSPISGH----RSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLE   80 (113)
T ss_dssp             ECSEEEEETTCCEEEEEECSTTC----CEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             CCCeEEECCCCCEEEEEEECCCC----CEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCC
Confidence            35667788999999999865533    5789998  3322111           111222332     234689999999


Q ss_pred             cCCCeeEEEEEE
Q psy15235        175 VDDAGQYSCRLI  186 (323)
Q Consensus       175 ~~d~G~y~C~~~  186 (323)
                      ++|+|.|.|.+.
T Consensus        81 ~~Dsa~YyCA~~   92 (113)
T d2ntsp1          81 LGDSALYLCASS   92 (113)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceeeeeeee
Confidence            999999999883

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.08  E-value=8.7e-06  Score=53.81  Aligned_cols=73  Identities=16%  Similarity=0.327  Sum_probs=48.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCC--CCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++|+|.|...+....  ....+.||+.  |.....        ......++.    .....|+|.+++.+
T Consensus         8 ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   87 (113)
T d1n4xl_           8 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   87 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcc
Confidence            4666778899999999987543210  0247999982  321110        112233443    45578999999999


Q ss_pred             CCeeEEEEE
Q psy15235        177 DAGQYSCRL  185 (323)
Q Consensus       177 d~G~y~C~~  185 (323)
                      |+|.|.|..
T Consensus        88 DsavYyCa~   96 (113)
T d1n4xl_          88 DLGIYYCFQ   96 (113)
T ss_dssp             GCEEEEEEE
T ss_pred             cCEEEEEEE
Confidence            999999976

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.08  E-value=2e-05  Score=50.66  Aligned_cols=65  Identities=18%  Similarity=0.333  Sum_probs=42.0

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..|+..+|.|.+.++.|. ...|+|.+||..+...........      .....|.+   ...+...|+|.+ .+.
T Consensus        17 ~~~~~~tL~C~v~gF~P~-~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V-~H~   87 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPP-VVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPSTDDFYDCEV-DHW   87 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSS-CCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCTTCCEEEEE-ECT
T ss_pred             cCCCCEEEEEEEEeEECC-CCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCCCCEEEEEE-EEC
Confidence            457888999999998765 579999999988754211111111      12223333   334556899999 666

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=5.6e-06  Score=55.24  Aligned_cols=72  Identities=18%  Similarity=0.292  Sum_probs=47.6

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Cee---eec--------cCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDT---YFR--------SQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~---~~~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      |....+.+|++++|.|...++-...+.||+.  +..   +..        ...++...  .  ......|+|.+++.+|+
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~--~--~~~~~~L~I~~~~~~Ds   83 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS--G--SGTDYTLTISSLQPEDV   83 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--E--EBTEEEEEECSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeeccc--C--CCCEEEEEcccCccCCC
Confidence            3456678899999999986554456999983  211   111        11222221  1  11346899999999999


Q ss_pred             eEEEEEEee
Q psy15235        279 GNYYCHGNN  287 (323)
Q Consensus       279 G~y~C~a~n  287 (323)
                      |.|.|.+.+
T Consensus        84 avYyCa~~~   92 (119)
T d1f3rb2          84 ATYFCYQYN   92 (119)
T ss_dssp             SEEEEEEES
T ss_pred             eEEEeeccC
Confidence            999998764

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=9e-06  Score=52.82  Aligned_cols=71  Identities=20%  Similarity=0.392  Sum_probs=49.6

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee---------------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF---------------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      ...+++|++++|+|.+.|..-  -.+.|++.  |+.+.               .-.+|+.++.  +.......|.|.+++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~--D~s~n~~~L~~~sL~   86 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINR--DTSKSQVFLKMNSLQ   86 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEE--ETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEec--ccccceeeccccccc
Confidence            456788999999999988743  35889872  22221               1134666663  222345779999999


Q ss_pred             cCCCeEEEEEEe
Q psy15235        275 MADRGNYYCHGN  286 (323)
Q Consensus       275 ~~d~G~y~C~a~  286 (323)
                      .+|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (117)
T d1c5db1          87 TEDTAIYFCTRE   98 (117)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCcceEEEEecc
Confidence            999999999654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.08  E-value=1.6e-05  Score=51.70  Aligned_cols=75  Identities=17%  Similarity=0.351  Sum_probs=51.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|+++.|.|.+.|+.-. ...+.|+|  .|+.+      ..       .+...+|+.      .....|.|.
T Consensus         6 esg~~~~kPg~sv~LsC~~SG~s~~-~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~   84 (117)
T d1iqdb1           6 QSGAEVKKPGASVKVSCKVSGYTLT-ELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELS   84 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCC-CCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeec
Confidence            3445667889999999999886422 45788988  33221      11       234566665      234569999


Q ss_pred             eeecCCCeeEEEEEEcCC
Q psy15235        172 KTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       172 ~~~~~d~G~y~C~~~~~~  189 (323)
                      +++.+|++.|.|.. ...
T Consensus        85 ~L~~eDtAvYYCA~-~~~  101 (117)
T d1iqdb1          85 SLRSDDTAVYYCAV-PDP  101 (117)
T ss_dssp             SCCGGGCEEEEEEE-CSS
T ss_pred             ccCcCcceEEEEeE-cCC
Confidence            99999999999987 443

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.07  E-value=1.1e-05  Score=52.56  Aligned_cols=74  Identities=18%  Similarity=0.395  Sum_probs=50.1

Q ss_pred             eceeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceee------ec----------cCCeeeeecCCCCCCcceeEEEe
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTY------FR----------SQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      +....+++|++++|+|.+.|..-  -.+.|+|.  |+.+      ..          -.+|+.++.  +.......|.|.
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~--D~s~~t~~L~m~   83 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTS--DKSSNTAYLELS   83 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEE--ETTTTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEe--ccCceeEeeccc
Confidence            33456788999999999988643  35899872  2222      10          124566653  222245679999


Q ss_pred             ecCcCCCeEEEEEEee
Q psy15235        272 EATMADRGNYYCHGNN  287 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~n  287 (323)
                      +++.+|+..|.|....
T Consensus        84 sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          84 SLTSEDSAVYYCARSS   99 (117)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccCCCcceEEEEeecc
Confidence            9999999999996543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.07  E-value=8.8e-06  Score=52.97  Aligned_cols=69  Identities=23%  Similarity=0.405  Sum_probs=47.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|......    ..+.||+.  +.....        ......++.    .....|.|.++..+|+
T Consensus         6 sP~~l~~~~G~~vtl~C~~s~~~----~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           6 SPAIMSASPGEKVTMTCSASSSV----NYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             ESSEEEECTTCCEEEEEEESSCC----SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             cCCeEEECCCCCEEEEEEeCCCC----CccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            46667788999999999865433    46899983  211100        111123333    4557899999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|..
T Consensus        82 a~YyCa~   88 (104)
T d1yqvl1          82 ATYYCQQ   88 (104)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEe
Confidence            9999977

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.07  E-value=1.2e-05  Score=53.71  Aligned_cols=73  Identities=19%  Similarity=0.359  Sum_probs=47.5

Q ss_pred             eeEEeeCCeEEEEEEEecC--CCCcEEEEEC--Cee---ee------------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        214 TLTVIEGEKLRLECLVVGS--PPPTVEWRIG--NDT---YF------------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~--~~~---~~------------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      .....+|++++|.|.+.+.  ....+.||+.  |+.   +.            ....++..+.  +.......|+|.+++
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~--~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASK--NPSASTSILTIYSLE   87 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEE--CCTTTEEEEEECSCC
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccc--ccccccccccccccc
Confidence            4556689999999998654  2346999982  211   10            1122344432  112235779999999


Q ss_pred             cCCCeEEEEEEeec
Q psy15235        275 MADRGNYYCHGNNV  288 (323)
Q Consensus       275 ~~d~G~y~C~a~n~  288 (323)
                      .+|+|.|.|.+...
T Consensus        88 ~~Dsa~YyCA~~~~  101 (120)
T d1ypzf1          88 EEDEAIYYCSYGEG  101 (120)
T ss_dssp             GGGCSEEEEEECCT
T ss_pred             cccceeEEEEEcCC
Confidence            99999999987643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.07  E-value=1.2e-05  Score=53.73  Aligned_cols=72  Identities=24%  Similarity=0.486  Sum_probs=49.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc--------cccccCcEE------eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE--------ATELSGRLT------QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~--------~~~~~~~~~------~~~~~l~i~~~~~~  176 (323)
                      .+....+.+|++++|.|...+..-. ...+.|||.  |+.+..        .....+++.      .....|.|.+++.+
T Consensus         7 ~~~sv~v~~G~~vtL~C~~s~~~~~-~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~   85 (120)
T d1hxma1           7 EHQTVPVSIGVPATLRCSMKGEAIG-NYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER   85 (120)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGG-GSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             cCCCEEECCCCCEEEEEEEeccCcc-CCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccccc
Confidence            5566678899999999998764311 346999982  221110        122234554      23578999999999


Q ss_pred             CCeeEEEEE
Q psy15235        177 DAGQYSCRL  185 (323)
Q Consensus       177 d~G~y~C~~  185 (323)
                      |+|.|.|..
T Consensus        86 Dsa~YyCA~   94 (120)
T d1hxma1          86 DEGSYYCAC   94 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             CCceeecCc
Confidence            999999988

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.06  E-value=1.3e-05  Score=53.12  Aligned_cols=70  Identities=24%  Similarity=0.484  Sum_probs=46.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ce-eccc-----cccccCcEE-------eceeEEEEeeeecCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NK-SITE-----ATELSGRLT-------QSKDSITIRKTTVDD  177 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~-~~~~-----~~~~~~~~~-------~~~~~l~i~~~~~~d  177 (323)
                      .|....+.+|++++|.|......    ..+.|||.  +. +...     .........       .....|.|.+++.+|
T Consensus         7 ~P~~~~v~~G~~vtl~C~~~~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           7 SPSALSLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             ECSEEEEETTCCEEEEEEESSCC----SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             CCCEEEEcCCCCEEEEEEEecCC----ccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            46667788999999999876533    57999982  22 1110     000011111       345679999999999


Q ss_pred             CeeEEEEEE
Q psy15235        178 AGQYSCRLI  186 (323)
Q Consensus       178 ~G~y~C~~~  186 (323)
                      +|.|.|.+.
T Consensus        83 sa~YyCa~~   91 (113)
T d1h5ba_          83 SGTYFCAAE   91 (113)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEec
Confidence            999999883

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.06  E-value=1.2e-05  Score=52.97  Aligned_cols=73  Identities=15%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCC-CCceEEEEEC--Ceec----cc----cccccCcEE----eceeEEEEeeeecCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYKG--NKSI----TE----ATELSGRLT----QSKDSITIRKTTVDD  177 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~~--~~~~----~~----~~~~~~~~~----~~~~~l~i~~~~~~d  177 (323)
                      .|....+.+|++|+|.|........ ....+.||+.  |...    ..    ......++.    .....|+|.+++++|
T Consensus         7 sP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~D   86 (111)
T d2gsia1           7 SPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEED   86 (111)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccC
Confidence            4666678899999999987542211 0235899983  3211    11    111123444    456789999999999


Q ss_pred             CeeEEEEE
Q psy15235        178 AGQYSCRL  185 (323)
Q Consensus       178 ~G~y~C~~  185 (323)
                      +|.|.|.+
T Consensus        87 sA~YyCa~   94 (111)
T d2gsia1          87 AATYYCSH   94 (111)
T ss_dssp             CEEEEEEE
T ss_pred             CceEEEEE
Confidence            99999987

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.06  E-value=6.3e-06  Score=54.98  Aligned_cols=71  Identities=18%  Similarity=0.337  Sum_probs=48.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec---cc-----cccccCcEE----eceeEEEEeeeecCCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI---TE-----ATELSGRLT----QSKDSITIRKTTVDDA  178 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~---~~-----~~~~~~~~~----~~~~~l~i~~~~~~d~  178 (323)
                      .|....+.+|++++|.|......   ...+.|||.  +...   ..     ......++.    .....|.|.+++++|+
T Consensus         7 ~P~sv~~~~G~svtl~C~~s~~~---~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (119)
T d1f3rb2           7 SPSLLSASVGDRVTLSCKGSQNI---NNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV   83 (119)
T ss_dssp             ETSEECCCTTCCEEEEEECSSCC---BTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             cCCEEEECCCCCEEEEEEeCCCC---cceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCC
Confidence            35556688899999999876654   457999983  2211   10     111123333    4456899999999999


Q ss_pred             eeEEEEEE
Q psy15235        179 GQYSCRLI  186 (323)
Q Consensus       179 G~y~C~~~  186 (323)
                      |.|.|...
T Consensus        84 avYyCa~~   91 (119)
T d1f3rb2          84 ATYFCYQY   91 (119)
T ss_dssp             SEEEEEEE
T ss_pred             eEEEeecc
Confidence            99999873

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.3e-05  Score=45.05  Aligned_cols=59  Identities=22%  Similarity=0.409  Sum_probs=42.2

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeecCCCeeEEEEE
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      ...|..+.|+|........ ...-.|.|+|+.+...     +.......+.|..  .+++|.|.|..
T Consensus         9 ~~~~sk~~LtCnLt~s~~~-i~ghrW~K~gkvl~ed-----~~~~~~tey~V~~--~D~SGeY~CVF   67 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATE-VTGHRWLKGGVVLKED-----ALPGQKTEFKVDS--DDQWGEYSCVF   67 (80)
T ss_dssp             EEETTEEEEEEEEESCSSC-CCEEEEESSSEEEECT-----TCCCSEEEEEECG--GGCCEEEEEEE
T ss_pred             ccCCCCEEEEEECCCCCCc-eeeeEEeeCCEEcccc-----CCCCCceEEEEec--CCCCceEEEEE
Confidence            4568899999999775432 3467899999999862     2223334555654  78999999999

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=5.8e-05  Score=44.48  Aligned_cols=60  Identities=18%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             EeeCCeEEEEEEEecCCCC--cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        217 VIEGEKLRLECLVVGSPPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      ...|..+.|+|....++.+  .-.|.++|..+..+...          .....+.|..  .+++|+|.|+..+.
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~----------~~~tey~V~~--~D~SGeY~CVFl~~   70 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----------GQKTEFKVDS--DDQWGEYSCVFLPE   70 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC----------CSEEEEEECG--GGCCEEEEEEEEST
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC----------CCceEEEEec--CCCCceEEEEEcCC
Confidence            3568899999999766433  59999999999743211          1245566664  77899999997643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.05  E-value=8.7e-06  Score=52.90  Aligned_cols=72  Identities=24%  Similarity=0.368  Sum_probs=48.7

Q ss_pred             ceeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee----------------ccCCeeeeecCCCCCCcceeEEEee
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ....+++|+++.|+|.+.|..-  -.+.|++.  |+.+.                .-.+|+.++.  +.......|.+.+
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSr--D~s~nt~yL~m~~   85 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISA--DNSKNTAYLQMNS   85 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEE--EGGGTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEe--ccccceEEecccc
Confidence            3456788999999999998743  35888872  22111                0124555552  2222456799999


Q ss_pred             cCcCCCeEEEEEEe
Q psy15235        273 ATMADRGNYYCHGN  286 (323)
Q Consensus       273 v~~~d~G~y~C~a~  286 (323)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (117)
T d1jpth1          86 LRAEDTAVYYCARD   99 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEeec
Confidence            99999999999654

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.05  E-value=1.3e-05  Score=52.99  Aligned_cols=75  Identities=12%  Similarity=0.123  Sum_probs=47.1

Q ss_pred             EEEeeceEEecCCcEEEEEEecc---CceEEEEEc--Ccccee--ec-----cCcceEEEeeeeCCeEEEEEeecc--cC
Q psy15235         25 ITYFGDTEIMEGAPINISCILTI---FEQVKWQLN--GRNINQ--SS-----VDSGFAATANLTEDNFKYSIHEAI--LE   90 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~~---~~~v~W~~~--g~~~~~--~~-----~~~~~~~~~~~~~~~~~l~i~~~~--~~   90 (323)
                      +++|..+.+.+|++|+|.|....   ...+.|||.  |+.+..  ..     ......+....+.....|.|.++.  |+
T Consensus         2 t~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   81 (112)
T d1kgcd1           2 TTQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDA   81 (112)
T ss_dssp             EECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             eECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccc
Confidence            45677788999999999998432   235899993  332221  10     111222333444566677777665  49


Q ss_pred             cceEEEeec
Q psy15235         91 SGYVQSSLF   99 (323)
Q Consensus        91 G~Y~C~~~~   99 (323)
                      |.|+|.+..
T Consensus        82 a~YyCa~~~   90 (112)
T d1kgcd1          82 AVYYCILPL   90 (112)
T ss_dssp             EEEEEECCC
T ss_pred             eeEeeeEec
Confidence            999998754

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.05  E-value=1.2e-05  Score=51.54  Aligned_cols=73  Identities=21%  Similarity=0.330  Sum_probs=49.6

Q ss_pred             eceeEEeeCCeEEEEEEEecCCC--CcEEEEE--CCeeee------c------------cCCeeeeecCCCCCCcceeEE
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPP--PTVEWRI--GNDTYF------R------------SQGRIKLSEHPEKGTANSVLQ  269 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~--~~~~~~------~------------~~~~~~~~~~~~~~~~~~~L~  269 (323)
                      +....+++|++++|+|.+.|..-  -.+.|++  .|+.+.      .            -.+|++++.  +.......|.
T Consensus         7 SG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~--D~s~~t~~L~   84 (109)
T d2ck0h1           7 SGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISR--DDSQSMLYLQ   84 (109)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEE--ETTTTEEEEE
T ss_pred             ECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceecc--ccccceeEec
Confidence            33566789999999999988643  3588887  222211      0            123556663  2223456799


Q ss_pred             EeecCcCCCeEEEEEEe
Q psy15235        270 IDEATMADRGNYYCHGN  286 (323)
Q Consensus       270 i~~v~~~d~G~y~C~a~  286 (323)
                      |.+++.+|++.|.|.-.
T Consensus        85 i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          85 MNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccCCCHhHCEEEEEEEc
Confidence            99999999999999753

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.05  E-value=1.8e-07  Score=60.25  Aligned_cols=73  Identities=22%  Similarity=0.483  Sum_probs=47.7

Q ss_pred             eEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeecCcCCCeEE
Q psy15235        215 LTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEATMADRGNY  281 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y  281 (323)
                      ..|.+|++++|.|..... ...+.||+.  +..+.           ...+++...  .+.......|+|.+++.+|+|.|
T Consensus         3 lsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~~~~~Dsa~Y   79 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVT--LDTSKKSSSLLITASRAADTASY   79 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBC--CBGGGTBCCBCCSSCCSTTCSCC
T ss_pred             ceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceee--ccCcceecccCcCCCCcccCEEE
Confidence            457799999999987532 346999972  22211           011223222  11112346799999999999999


Q ss_pred             EEEEeeccc
Q psy15235        282 YCHGNNVAT  290 (323)
Q Consensus       282 ~C~a~n~~g  290 (323)
                      .|.+....|
T Consensus        80 yCA~~~~~g   88 (96)
T d1ymmd1          80 FCATDTTSG   88 (96)
T ss_dssp             EEEEEETTS
T ss_pred             eEeEecCCC
Confidence            999887654

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.6e-05  Score=50.63  Aligned_cols=67  Identities=13%  Similarity=0.343  Sum_probs=40.8

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+..++|.|.+.|+ |.. .++|.+||..+........... ..++  ...+.|.+   ..++...|+|.+.+..
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~-~~~~~~~~~s~l~v---~~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRP-AGDRTFQKWAAVVV---PSGEEQRYTCHVQHEG   84 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEE-CSSSCEEEEEEEEE---ETTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEc-CCCCeEEEEEEEEE---EcCCCCEEEEEEEECc
Confidence            45689999999886 433 6999999988754321111111 1122  12333443   3444557999999976

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=3e-05  Score=48.63  Aligned_cols=64  Identities=19%  Similarity=0.342  Sum_probs=42.0

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .++.++|.|.+.++.|. ...|+|.++|..+...........      .....|.+   ...+...|+|.+ .+.
T Consensus        14 ~~~~~~L~C~a~gFyP~-~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v---~~~~~~~ytC~V-~H~   83 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPA-DITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVV---PLGKEQYYTCHV-YHQ   83 (89)
T ss_dssp             CSSEEEEEEEEESCBSS-CCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEE---ESSTTTTCEEEE-ECS
T ss_pred             CCCCEEEEEEEEeEECC-CCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEe---cCcCCCEEEEEE-EEC
Confidence            46789999999998876 579999999988765222211111      11233333   344555899999 665

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=1.7e-05  Score=50.02  Aligned_cols=66  Identities=15%  Similarity=0.227  Sum_probs=42.1

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+..++|.|.+.|+ |.. .++|.+||..+...  ........++. ...+.|.+.   .++...|+|.+.+..
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~--~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~s   82 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG--NCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEG   82 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCC--EEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCcc--CccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCC
Confidence            45689999999886 544 79999999876432  22222111111 234555554   445568999999976

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.04  E-value=1.5e-05  Score=52.28  Aligned_cols=74  Identities=14%  Similarity=0.334  Sum_probs=50.3

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCC--cEEEEEC--Ceeee-------c---------cCCeeeeecCCCCCCcceeEEEe
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPP--TVEWRIG--NDTYF-------R---------SQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~--~~~~~-------~---------~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      +....+++|+++.|+|.+.|..-.  .+.|++.  |+.+.       .         -.+|+.++.  +.......|.|.
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~--D~s~ntvyL~~~   85 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTR--DTSATTAYMGLS   85 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEE--ETTTTEEEEEEC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEec--cCCcceeeeccc
Confidence            334567899999999999887433  4888872  22211       0         124666663  222245679999


Q ss_pred             ecCcCCCeEEEEEEee
Q psy15235        272 EATMADRGNYYCHGNN  287 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~n  287 (323)
                      +++.+|++.|.|....
T Consensus        86 ~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          86 SLRPEDTAVYYCARDP  101 (122)
T ss_dssp             SCCGGGCEEEEEEEET
T ss_pred             ccCCCcceEEEEeecC
Confidence            9999999999997653

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=2.2e-05  Score=50.26  Aligned_cols=74  Identities=14%  Similarity=0.120  Sum_probs=45.9

Q ss_pred             eeeeeCCceeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE--EeceeEEEEeeeecCCCeeEEEEE
Q psy15235        108 GNYDIEPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL--TQSKDSITIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       108 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~  185 (323)
                      |.+...|. .++..|++|+|.|.....    ...+.++|+|.............  ......+.|.+++..|+|.|+|..
T Consensus         5 PsLsa~P~-~~v~~G~~VTL~C~~~~~----~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           5 PTLSAQPS-PVVNSGGNVTLQCDSQVA----FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECSSC----CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CEEEeeCC-CccCCCCcEEEEeCCCCC----CCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence            44455443 347789999999987543    36889999886543200000111  133567999999999999999988


Q ss_pred             E
Q psy15235        186 I  186 (323)
Q Consensus       186 ~  186 (323)
                      .
T Consensus        80 ~   80 (98)
T d1ugna2          80 Y   80 (98)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.04  E-value=2.3e-05  Score=52.54  Aligned_cols=70  Identities=21%  Similarity=0.364  Sum_probs=47.0

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-------------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-------------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-------------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      .....+|++++|.|.+.+..-. ...+.|||.  |+.+..             .....+|+.      .....|.|.++.
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITIS-ATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTT-TSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             eEEeCCCCCEEEEEEEcCCCcc-cCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            3456789999999999874311 357899982  321110             112234554      234679999999


Q ss_pred             cCCCeeEEEEEE
Q psy15235        175 VDDAGQYSCRLI  186 (323)
Q Consensus       175 ~~d~G~y~C~~~  186 (323)
                      .+|+|.|.|.+.
T Consensus        89 ~~Dsa~YyCA~~  100 (123)
T d1hxmb1          89 KQDIATYYCALW  100 (123)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccCcEEEEeee
Confidence            999999999873

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.04  E-value=1.5e-05  Score=52.45  Aligned_cols=72  Identities=19%  Similarity=0.337  Sum_probs=46.3

Q ss_pred             eceeEEeeCCeEEEEEEEecCC-----CCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        212 VETLTVIEGEKLRLECLVVGSP-----PPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p-----~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      |....+.+|++++|.|...+..     ...+.||+.  |..+.           ....++....    ......|+|.++
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~----~~~~~~L~I~~~   83 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSG----SGTDFTLKISRV   83 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSC
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeC----CCCEEEEEECcc
Confidence            5567788999999999875432     235999973  22211           0112222211    113568999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|++.|.|...+
T Consensus        84 ~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          84 EAEDLGVYYCWQGT   97 (112)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ccCcCEeEEEEcCC
Confidence            99999999996543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.03  E-value=2.7e-05  Score=51.21  Aligned_cols=75  Identities=17%  Similarity=0.205  Sum_probs=47.3

Q ss_pred             EEE-eeceEEecCCcEEEEEEec-cCceEEEEEc--Ccccee---e--------ccCcceEEEeeeeCCeEEEEEeecc-
Q psy15235         25 ITY-FGDTEIMEGAPINISCILT-IFEQVKWQLN--GRNINQ---S--------SVDSGFAATANLTEDNFKYSIHEAI-   88 (323)
Q Consensus        25 i~~-~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~--g~~~~~---~--------~~~~~~~~~~~~~~~~~~l~i~~~~-   88 (323)
                      |.+ |..+.+.+|++|+|.|... ....+.|||.  |+....   .        ................+.|.|.++. 
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP   83 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECCCcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH
Confidence            444 6678899999999999843 4567999993  322211   0        0011122233334567888888775 


Q ss_pred             -cCcceEEEeec
Q psy15235         89 -LESGYVQSSLF   99 (323)
Q Consensus        89 -~~G~Y~C~~~~   99 (323)
                       |+|.|+|....
T Consensus        84 ~Dsa~YyCa~~~   95 (110)
T d2aq2a1          84 SQTSVYFCASGG   95 (110)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             hhCEEEEEeeCC
Confidence             49999998753

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.03  E-value=3.2e-05  Score=49.36  Aligned_cols=68  Identities=19%  Similarity=0.340  Sum_probs=42.1

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEece---eEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK---DSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..++.++|.|.+.++.|. ...++|.+||..+..............   .......+...+...|+|.+ .+.
T Consensus        15 ~~~~~~tL~C~~~gFyP~-~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V-~H~   85 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPA-EVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVV-EHI   85 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSS-CCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEE-ECT
T ss_pred             cCCCcEEEEEEEEEEECC-CCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEE-EeC
Confidence            457889999999998665 689999999988754211111111111   11111223445556899999 666

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.03  E-value=1.3e-05  Score=52.48  Aligned_cols=70  Identities=23%  Similarity=0.332  Sum_probs=48.4

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee------c---------cCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF------R---------SQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~------~---------~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++.  |+.+.      .         -.+|++++.+  .......|.|.+++
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D--~s~nt~~L~i~~l~   86 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVD--TSKNQFSLKLSSVT   86 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEE--TTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEecc--Cchheecccccccc
Confidence            456788999999999988743  35889872  22211      0         1246666632  22245679999999


Q ss_pred             cCCCeEEEEEE
Q psy15235        275 MADRGNYYCHG  285 (323)
Q Consensus       275 ~~d~G~y~C~a  285 (323)
                      .+|++.|.|..
T Consensus        87 ~eDtA~YYCAr   97 (120)
T d1dn0b1          87 AADTAVYYCAR   97 (120)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccccEEEEEe
Confidence            99999999943

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.03  E-value=1e-05  Score=52.65  Aligned_cols=69  Identities=22%  Similarity=0.409  Sum_probs=47.1

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee-------c---------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF-------R---------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~-------~---------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..  .-.+.|++.  |+.+.       .         -.+|++++.  ++......|.+.++
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisr--D~s~~tvyL~~~~L   86 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSL--ETSASTAYLQINSL   86 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEE--EGGGTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEe--cCCceeEEeeeeec
Confidence            45678899999999998864  335888872  22111       0         124556652  22223567999999


Q ss_pred             CcCCCeEEEEE
Q psy15235        274 TMADRGNYYCH  284 (323)
Q Consensus       274 ~~~d~G~y~C~  284 (323)
                      +.+|++.|.|.
T Consensus        87 ~~eDtAvYYCA   97 (118)
T d1nlbh1          87 KNEDTATYFCA   97 (118)
T ss_dssp             CGGGCEEEEEE
T ss_pred             ccCcceEEEEe
Confidence            99999999994

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.4e-05  Score=52.65  Aligned_cols=68  Identities=16%  Similarity=0.384  Sum_probs=42.2

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEE--EEECCee-ccc-----------cccccCcEE--eceeEEEEeeeecCCCeeEE
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIV--WYKGNKS-ITE-----------ATELSGRLT--QSKDSITIRKTTVDDAGQYS  182 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~--W~~~~~~-~~~-----------~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~  182 (323)
                      +..|++++|.|............+.  |.++... +..           ...+..+..  ....+|.|.+++.+|+|.|.
T Consensus         6 a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y~   85 (110)
T d1ncna_           6 AYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQ   85 (110)
T ss_dssp             EETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEEE
T ss_pred             EEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEEE
Confidence            5679999999988543321122334  4443322 110           112233332  45578999999999999999


Q ss_pred             EEEE
Q psy15235        183 CRLI  186 (323)
Q Consensus       183 C~~~  186 (323)
                      |.+.
T Consensus        86 C~V~   89 (110)
T d1ncna_          86 CIIH   89 (110)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9994

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.03  E-value=1.5e-05  Score=52.39  Aligned_cols=71  Identities=24%  Similarity=0.425  Sum_probs=47.5

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|++++|+|.+.|..  .-.+.|++  .|+.+.      .          -.+|++++.  +.......|+|.++
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~--d~s~~~~~L~i~~L   86 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTV--EKSSSTVYLEFSRL   86 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEE--ETTTTEEEEEEEEE
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeec--ccccceeeeeeccc
Confidence            34677899999999998763  23589987  232211      0          123555542  22223567999999


Q ss_pred             CcCCCeEEEEEEe
Q psy15235        274 TMADRGNYYCHGN  286 (323)
Q Consensus       274 ~~~d~G~y~C~a~  286 (323)
                      +.+|++.|.|...
T Consensus        87 ~~eDsAvYYCA~~   99 (119)
T d1qnzh_          87 TSDDSAVYYCAIH   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CccceeEEEEEEe
Confidence            9999999999654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.03  E-value=3.1e-05  Score=50.66  Aligned_cols=71  Identities=28%  Similarity=0.441  Sum_probs=49.5

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee-------c---------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF-------R---------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~-------~---------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..  ...+.|++.  |+.+.       .         -.+|++++  .+.......|.|+++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiS--rD~s~~t~yLq~~~L   86 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTIS--RDKGKNTVYLQMDSL   86 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEE--CTTSTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEe--ecCCceEEEEEeeec
Confidence            45678899999999998863  335888872  22111       1         12366666  333334577999999


Q ss_pred             CcCCCeEEEEEEe
Q psy15235        274 TMADRGNYYCHGN  286 (323)
Q Consensus       274 ~~~d~G~y~C~a~  286 (323)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d2p49b1          87 KPEDTATYYCAAG   99 (121)
T ss_dssp             CGGGCEEEEEEES
T ss_pred             cccceeEEeeecc
Confidence            9999999999864

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.03  E-value=1.3e-05  Score=52.30  Aligned_cols=70  Identities=19%  Similarity=0.441  Sum_probs=47.1

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEE--CCeeee-------c---------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRI--GNDTYF-------R---------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~--~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|++++|+|.+.|..  .-.+.|++  .|+.+.       .         -.+|+.++.  +.......|.|.++
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~--D~s~~t~~L~i~~l   86 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTV--DKSSSTAFMHLNSL   86 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEee--ccCceeeEeeeeec
Confidence            34578899999999998763  33588987  232221       0         123555552  22223467999999


Q ss_pred             CcCCCeEEEEEE
Q psy15235        274 TMADRGNYYCHG  285 (323)
Q Consensus       274 ~~~d~G~y~C~a  285 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (115)
T d1f3dh1          87 TFEDSAVYYCAN   98 (115)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CcCCcEEEEEec
Confidence            999999999954

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.03  E-value=6.1e-06  Score=52.72  Aligned_cols=66  Identities=21%  Similarity=0.319  Sum_probs=41.7

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+..++|.|.+.|+ |.. .+.|++|+..+..........  ..++  ...+.|++..   +|...|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~--~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILP--NANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEE--CTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEe--CCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            45689999999875 655 799999988764321111111  1111  2345566653   44557999999976

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.02  E-value=1.1e-05  Score=53.14  Aligned_cols=73  Identities=15%  Similarity=0.290  Sum_probs=47.7

Q ss_pred             CCceeEEecCCcEEEEEEeecCCC-CCCceEEEEEC--Ceecc----c----cccccCcEE----eceeEEEEeeeecCC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPP-GDDYQIVWYKG--NKSIT----E----ATELSGRLT----QSKDSITIRKTTVDD  177 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~-~~~~~i~W~~~--~~~~~----~----~~~~~~~~~----~~~~~l~i~~~~~~d  177 (323)
                      .|....+.+|++|+|.|......+ .....+.||+.  |....    .    ......++.    .....|.|.+++.+|
T Consensus         7 sP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   86 (111)
T d1j05a_           7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADD   86 (111)
T ss_dssp             ECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGG
T ss_pred             cCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccccc
Confidence            456666889999999998743221 00345999983  32111    0    111122333    456789999999999


Q ss_pred             CeeEEEEE
Q psy15235        178 AGQYSCRL  185 (323)
Q Consensus       178 ~G~y~C~~  185 (323)
                      +|.|.|.+
T Consensus        87 sa~YyCa~   94 (111)
T d1j05a_          87 VATYYCQQ   94 (111)
T ss_dssp             CEEEEEEE
T ss_pred             CccEEEee
Confidence            99999988

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.02  E-value=1.3e-05  Score=51.84  Aligned_cols=73  Identities=18%  Similarity=0.324  Sum_probs=49.6

Q ss_pred             eceeEEeeCCeEEEEEEEecCCC--CcEEEEE--CCeeee-------c---------cCCeeeeecCCCCCCcceeEEEe
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPP--PTVEWRI--GNDTYF-------R---------SQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~--~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      +....+++|+++.|+|.+.|..-  -.+.|.+  .|+.+.       .         -.+|+.++.  +.......|.+.
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~--D~s~~tvyL~~~   84 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTV--DTSSSTAYMQLS   84 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE--ETTTTEEEEEEC
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEec--ccccceeEeccc
Confidence            34566788999999999998643  3588887  222211       1         123566652  222345679999


Q ss_pred             ecCcCCCeEEEEEEe
Q psy15235        272 EATMADRGNYYCHGN  286 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~  286 (323)
                      +++.+|.+.|.|...
T Consensus        85 sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          85 SLTSDDSAVYYCANK   99 (116)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCceEEEEccc
Confidence            999999999999643

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.02  E-value=2e-05  Score=51.78  Aligned_cols=73  Identities=15%  Similarity=0.360  Sum_probs=49.4

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEE--CCeeee-------c---------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRI--GNDTYF-------R---------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~--~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|++++|+|.+.|..  ...+.|++  .|+.+.       .         -.+|++++.  +.......|.|.++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~--d~s~n~v~L~i~~l   86 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTV--DRSSTTAYIELVRL   86 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeee--ccCcceEEcccccc
Confidence            45678899999999998764  23588987  232221       0         123555553  22224567999999


Q ss_pred             CcCCCeEEEEEEeec
Q psy15235        274 TMADRGNYYCHGNNV  288 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~  288 (323)
                      +.+|++.|.|.....
T Consensus        87 ~~eDtA~YYCAr~~~  101 (120)
T d1pg7x1          87 TSNDSAVYYCAREDF  101 (120)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             CCCcceEEEeeecCC
Confidence            999999999986543

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=1e-05  Score=54.02  Aligned_cols=73  Identities=14%  Similarity=0.282  Sum_probs=47.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec---cc------cccccCcE------EeceeEEEEeeeec
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI---TE------ATELSGRL------TQSKDSITIRKTTV  175 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~---~~------~~~~~~~~------~~~~~~l~i~~~~~  175 (323)
                      .|....+..|++++|.|............+.|||.  |+..   ..      .....++.      ......|.|.+++.
T Consensus         5 QP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (117)
T d1dqta_           5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA   84 (117)
T ss_dssp             CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG
T ss_pred             CCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc
Confidence            45666788899999999975533111346889983  2211   00      00111111      14457899999999


Q ss_pred             CCCeeEEEEE
Q psy15235        176 DDAGQYSCRL  185 (323)
Q Consensus       176 ~d~G~y~C~~  185 (323)
                      +|+|.|.|.+
T Consensus        85 ~Dsa~YyCa~   94 (117)
T d1dqta_          85 VDTGLYLCKV   94 (117)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccCEeEEEEE
Confidence            9999999988

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.01  E-value=1.4e-05  Score=51.71  Aligned_cols=70  Identities=24%  Similarity=0.441  Sum_probs=48.0

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee------c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-  ..+.|++.  |+.+.      .          -.+|++++.  +.......|.|+++
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSr--D~s~nt~~L~~~~L   86 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISR--DNAQNNLYLQLNSL   86 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEec--cCccceeeeeeeee
Confidence            456788999999999988743  35888872  22211      1          124556653  22224567999999


Q ss_pred             CcCCCeEEEEEE
Q psy15235        274 TMADRGNYYCHG  285 (323)
Q Consensus       274 ~~~d~G~y~C~a  285 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCA~   98 (114)
T d1indh1          87 RSEDTALYFCAS   98 (114)
T ss_dssp             CGGGCEEEEEEC
T ss_pred             ccCcccEEEECC
Confidence            999999999964

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.01  E-value=1.5e-05  Score=52.46  Aligned_cols=70  Identities=20%  Similarity=0.404  Sum_probs=47.9

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|++++|.|.+.+..-. ...+.|+|  .|+.+      ..       .+...+|+.      .....|+|.++
T Consensus         8 g~~~~kpG~Sv~LsC~~SG~s~~-~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L   86 (119)
T d1qnzh_           8 GAELVKPGASVKMSCKASGYTFT-TYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRL   86 (119)
T ss_dssp             CCCEECTTEEEEEEEEEETCCSS-SSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEE
T ss_pred             CCceECCCCCEEEEEEEeccCCC-CCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeeccc
Confidence            34467789999999999875422 34689997  33321      11       122345554      23456999999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDsAvYYCA~   98 (119)
T d1qnzh_          87 TSDDSAVYYCAI   98 (119)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CccceeEEEEEE
Confidence            999999999966

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.5e-05  Score=50.04  Aligned_cols=67  Identities=16%  Similarity=0.410  Sum_probs=41.2

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++.++|.|.+.|+ |.. .++|.+||..+........... ..++  ...+.|.+..   .+...|+|.+.+..
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~-~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRP-AGDGTFQKWASVVVPL---GKEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEE-CSSSCEEEEEEEEEES---STTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEec-CCCCcEEEEEEEEecC---cCCCEEEEEEEECC
Confidence            46789999999887 433 6999999988753211111111 1111  2345555553   33447999999875

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=1.9e-05  Score=50.43  Aligned_cols=69  Identities=19%  Similarity=0.340  Sum_probs=42.2

Q ss_pred             eCCeEEEEEEEecCCCC--cEEEEEC--Ceeee----------------ccCCeeeeecCCCCCCcceeEEEeecCcCCC
Q psy15235        219 EGEKLRLECLVVGSPPP--TVEWRIG--NDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEATMADR  278 (323)
Q Consensus       219 ~g~~~~l~C~~~g~p~~--~~~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  278 (323)
                      +|++++|+|.+.|..-.  .+.|+|.  |+.++                .-.+|++++  .+.......|+|.+++.+|.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS--~D~s~~t~~L~~~sL~~eDT   78 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLT--VDKPSSTAYMQLSSLTSEDS   78 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEE--C----CEEEEEECCC---CC
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEe--ccccccEEEeeeeecccccc
Confidence            48999999999886433  5889862  22221                112456666  22333456799999999999


Q ss_pred             eEEEEEEeecc
Q psy15235        279 GNYYCHGNNVA  289 (323)
Q Consensus       279 G~y~C~a~n~~  289 (323)
                      +.|.|......
T Consensus        79 AvYYCAr~~~~   89 (103)
T d1oari_          79 AVYYCARMWYY   89 (103)
T ss_dssp             SEEEEEEEECS
T ss_pred             EEEEeEEECCC
Confidence            99999765544

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=1.1e-05  Score=52.77  Aligned_cols=71  Identities=13%  Similarity=0.283  Sum_probs=45.7

Q ss_pred             eCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+..++|.|.+.|. |. ..|+|.+||..+..............++  ...+.|.|..-.......|+|.+.+..
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            36689999999775 54 3799999998765321111111111111  245677777666655678999999976

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.00  E-value=1.6e-05  Score=51.77  Aligned_cols=72  Identities=18%  Similarity=0.344  Sum_probs=48.0

Q ss_pred             eceeEEeeCCeEEEEEEEecCC--CCcEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEe
Q psy15235        212 VETLTVIEGEKLRLECLVVGSP--PPTVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      +....+.+|+++.|+|.+.|..  ...+.|++  .|+.+.      .          -..|+.++.  +.......|.|.
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~--D~s~~~~~L~i~   84 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTA--VTSTTTAYMELS   84 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEE--ETTTTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEc--ccCccEeEeeec
Confidence            3345678899999999998863  23588876  333221      0          122445542  222245679999


Q ss_pred             ecCcCCCeEEEEEE
Q psy15235        272 EATMADRGNYYCHG  285 (323)
Q Consensus       272 ~v~~~d~G~y~C~a  285 (323)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            99999999999964

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=4e-05  Score=45.73  Aligned_cols=77  Identities=21%  Similarity=0.298  Sum_probs=54.0

Q ss_pred             eeEEeeCCeEEEEEEEec-CCCCcEEEEE-CCee---eeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVG-SPPPTVEWRI-GNDT---YFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNV  288 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g-~p~~~~~W~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~  288 (323)
                      ...+..|+.+.|.|.+.- ...|.++|-+ +|..   +.....+.+... .++......|.+..+..+|.|.|+|.|.-.
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~-e~~nis~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWE-ENRSVPVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEE-CSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchh-hcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence            456778999999999953 2578999987 4432   222222222221 334456788999999999999999999876


Q ss_pred             ccC
Q psy15235        289 ATR  291 (323)
Q Consensus       289 ~g~  291 (323)
                      .|-
T Consensus        91 s~v   93 (104)
T d1xaua_          91 SQV   93 (104)
T ss_dssp             TEE
T ss_pred             hhh
Confidence            653

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.3e-06  Score=55.54  Aligned_cols=73  Identities=21%  Similarity=0.318  Sum_probs=46.7

Q ss_pred             EeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeee-cC--CCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        217 VIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLS-EH--PEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~-~~--~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ...++.++|.|.+.|+ |.. .+.|++||..+.......... ..  ..++  ...+.|+|..-.......|+|.+.+..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            3457899999999775 544 799999998875432111100 00  1111  234667777666555668999999966

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.99  E-value=2e-05  Score=51.55  Aligned_cols=72  Identities=17%  Similarity=0.348  Sum_probs=49.3

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceee------e-c---------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTY------F-R---------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~------~-~---------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|.|.+.|..-  -.+.|++.  |+.+      . .         -.+|++++.  +.......|.|.++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSr--D~s~nt~yLqm~sL   86 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITA--DTSTDTGYLELSSL   86 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEec--ccCceEEEeeeecc
Confidence            456788999999999998643  35889872  2221      1 0         124666663  22234567999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (119)
T d1rz7h1          87 RSEDTAVYYCAADP  100 (119)
T ss_dssp             CGGGCEEEEEEECT
T ss_pred             CcccceEEEEeecC
Confidence            99999999996543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.99  E-value=2.4e-05  Score=51.56  Aligned_cols=73  Identities=14%  Similarity=0.317  Sum_probs=47.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCC--CCCCceEEEEEC--Ceecc----c----cccccCcEE----eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPP--PGDDYQIVWYKG--NKSIT----E----ATELSGRLT----QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~--~~~~~~i~W~~~--~~~~~----~----~~~~~~~~~----~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++|+|.|...+..  ......+.||+.  |....    .    ......++.    .....|.|.+++.+
T Consensus         7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~   86 (112)
T d1mjul1           7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAE   86 (112)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcccc
Confidence            45556678899999999876531  000357899973  32211    1    111233443    45678999999999


Q ss_pred             CCeeEEEEE
Q psy15235        177 DAGQYSCRL  185 (323)
Q Consensus       177 d~G~y~C~~  185 (323)
                      |++.|.|..
T Consensus        87 DsAvYyCa~   95 (112)
T d1mjul1          87 DVGVYYCLQ   95 (112)
T ss_dssp             GCEEEEEEE
T ss_pred             CCceEEEEe
Confidence            999999965

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.1e-05  Score=52.50  Aligned_cols=74  Identities=15%  Similarity=0.223  Sum_probs=42.8

Q ss_pred             eeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCC--CeEEEEEEeecccC
Q psy15235        218 IEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMAD--RGNYYCHGNNVATR  291 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d--~G~y~C~a~n~~g~  291 (323)
                      .....++|.|.+.|+ |.. .++|.+++......................+.|+|..-+...  ...|+|.+.+..+.
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            346789999999875 644 799999987654211110000001111234667777555432  24799999998843

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.99  E-value=2.5e-05  Score=49.91  Aligned_cols=68  Identities=16%  Similarity=0.373  Sum_probs=39.5

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEece---eEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSK---DSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..++.++|.|.+.++.|. ...|.|.++|..+..............   .......+...+...|+|.+ .+.
T Consensus        14 ~~~~~~tL~C~~~gF~P~-~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V-~H~   84 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPG-QIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHV-EHP   84 (97)
T ss_dssp             -----CEEEEEEEEEBSS-CCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEE-ECT
T ss_pred             cCCCCEEEEEEEeeeECC-CeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEE-EeC
Confidence            346778999999998776 589999999987654222121111111   11222234455667999999 665

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.99  E-value=1.7e-05  Score=52.20  Aligned_cols=73  Identities=18%  Similarity=0.344  Sum_probs=47.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCC--CCceEEEEEC--Ceeccc--------cccccCcEE----eceeEEEEeeeecC
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPG--DDYQIVWYKG--NKSITE--------ATELSGRLT----QSKDSITIRKTTVD  176 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~--~~~~i~W~~~--~~~~~~--------~~~~~~~~~----~~~~~l~i~~~~~~  176 (323)
                      .|....+.+|++|+|.|...+....  ....+.||+.  |.....        ......++.    .....|.|.+++++
T Consensus         7 sP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~e   86 (112)
T d1ncwl1           7 SPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAE   86 (112)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccC
Confidence            4666778899999999986542200  0346899973  322110        111233443    45568999999999


Q ss_pred             CCeeEEEEE
Q psy15235        177 DAGQYSCRL  185 (323)
Q Consensus       177 d~G~y~C~~  185 (323)
                      |+|.|.|..
T Consensus        87 DsAvYYC~~   95 (112)
T d1ncwl1          87 DLGVYYCWQ   95 (112)
T ss_dssp             GCEEEEEEE
T ss_pred             cCEeEEEEc
Confidence            999999966

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.98  E-value=2.7e-05  Score=50.56  Aligned_cols=72  Identities=18%  Similarity=0.326  Sum_probs=49.0

Q ss_pred             eeEEeeCCeEEEEEEEecCCCC--cEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPP--TVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-.  .+.|++  .|+.+.      .          -.+|++++.  +.......|.|.++
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~--D~s~~t~yLq~~~L   86 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTA--DRSSSIVYLQLNSL   86 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEec--cCccceeeeccccc
Confidence            4556789999999999987433  588987  222211      1          124566663  22224567999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|++.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (117)
T d1jnhb1          87 TSEDSAVYSCSRGR  100 (117)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CCCcceEEEEeecC
Confidence            99999999996543

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.98  E-value=3.7e-06  Score=54.60  Aligned_cols=71  Identities=18%  Similarity=0.319  Sum_probs=44.5

Q ss_pred             eCCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++.++|.|.+.|+ |. ..++|.+||......................+.|.|..-..+....|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999875 54 3799999997643211111111001111245677777665555668999999865

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.98  E-value=3.5e-05  Score=51.10  Aligned_cols=72  Identities=22%  Similarity=0.386  Sum_probs=49.9

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee----------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..  .-.+.|++.  |+.+.                .-.+|++++.  +.......|.|.++
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSr--D~s~~t~yL~i~~L   86 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISR--DNAKNTLYLQMNSL   86 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEE--CTTTCCEEEEEESC
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEec--cCCCceeEecEeee
Confidence            45678899999999998864  335889862  22211                1124666663  23334577999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (135)
T d1ieha_          87 KSEDTAVYYCAKYS  100 (135)
T ss_dssp             CSSSCEEEEEEEBS
T ss_pred             CcccceeeEEEEec
Confidence            99999999997654

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.98  E-value=3.7e-05  Score=50.71  Aligned_cols=75  Identities=12%  Similarity=0.137  Sum_probs=47.4

Q ss_pred             eEEE-eeceEEecCCcEEEEEEecc--------CceEEEEEc--Cccceee-------ccCcceEEEeeeeCCeEEEEEe
Q psy15235         24 KITY-FGDTEIMEGAPINISCILTI--------FEQVKWQLN--GRNINQS-------SVDSGFAATANLTEDNFKYSIH   85 (323)
Q Consensus        24 ~i~~-~~~~~v~~G~~v~L~C~~~~--------~~~v~W~~~--g~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~   85 (323)
                      .+++ |..+.+.+|++|+|.|....        ...+.|||.  |+.+..-       .......+..+.....+.|.|.
T Consensus         3 ~~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~   82 (113)
T d1q9ra1           3 VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTIT   82 (113)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             CEEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEec
Confidence            4544 66688999999999997332        235999993  3222111       0111112334455777888888


Q ss_pred             eccc--CcceEEEee
Q psy15235         86 EAIL--ESGYVQSSL   98 (323)
Q Consensus        86 ~~~~--~G~Y~C~~~   98 (323)
                      ++..  +|.|+|...
T Consensus        83 ~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          83 SVQAEDLAVYYCKQS   97 (113)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ccccCCCeEEEeccc
Confidence            8765  999999864

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.98  E-value=2.1e-05  Score=52.15  Aligned_cols=74  Identities=15%  Similarity=0.190  Sum_probs=47.4

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEEC--Ceeee-----cc---------CCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIG--NDTYF-----RS---------QGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~~-----~~---------~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      |....+.+|++++|.|... .....+.||+.  +..+.     ..         ..++...   ........|+|.+++.
T Consensus         6 P~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVS---REKKESFPLTVTSAQK   81 (114)
T ss_dssp             CSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEEC---CSSTTBCCEEECSCCS
T ss_pred             CCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEE---cccCCeEEEEECcCCc
Confidence            4456788999999999985 23457999973  21111     00         0111111   1112356799999999


Q ss_pred             CCCeEEEEEEeecc
Q psy15235        276 ADRGNYYCHGNNVA  289 (323)
Q Consensus       276 ~d~G~y~C~a~n~~  289 (323)
                      +|+|.|.|.+....
T Consensus        82 ~DSa~YyCa~~~~~   95 (114)
T d1ogae1          82 NPTAFYLCASSSRS   95 (114)
T ss_dssp             CCCEEEEEEEESST
T ss_pred             CCceeEEEeeccCC
Confidence            99999999876543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.97  E-value=1.2e-05  Score=52.31  Aligned_cols=72  Identities=17%  Similarity=0.353  Sum_probs=47.9

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCC--cEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEe
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPP--TVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      +....+++|+++.|+|.+.|..-.  .+.|++  .|+.+.      .          -.+|+.++.  +.......|.|+
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~--D~s~~t~~L~~~   84 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTV--DKSSSTAYMELA   84 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEE--EGGGTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEec--ccCcceEeeccc
Confidence            334567889999999999887433  488887  222211      0          124555552  222235679999


Q ss_pred             ecCcCCCeEEEEEE
Q psy15235        272 EATMADRGNYYCHG  285 (323)
Q Consensus       272 ~v~~~d~G~y~C~a  285 (323)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999943

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4e-05  Score=48.67  Aligned_cols=66  Identities=18%  Similarity=0.292  Sum_probs=41.7

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .|+.++|.|.+.++.|. ...|+|.+||..+..... .....   ..........+...+...|+|.+ .+.
T Consensus        14 ~~~~~tL~C~~~gFyP~-~i~v~W~~ng~~~~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V-~H~   82 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPG-KIDVHWTRAGEVQEPELR-GDVLHNGNGTYQSWVVVAVPPQDTAPYSCHV-QHS   82 (94)
T ss_dssp             TTSCEEEEEEEEEEBSS-CEEEEEEETTEECCCSEE-EEEEETTTTEEEEEEEEEECTTCCSCEEEEE-EET
T ss_pred             CCCCEEEEEEEEeEECC-CCEEEEEECCEECCCcEE-eeeecCCCCeEEEEEEeEeCCCCCCEEEEEE-EEC
Confidence            47899999999997765 579999999987654111 00011   11112223334455667899999 555

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.97  E-value=1.9e-05  Score=52.47  Aligned_cols=74  Identities=14%  Similarity=0.103  Sum_probs=46.4

Q ss_pred             EEEeeceEEecCCcEEEEEEec---cCceEEEEEc--C---cccee---e----------ccCc-ceEEEeeeeCCeEEE
Q psy15235         25 ITYFGDTEIMEGAPINISCILT---IFEQVKWQLN--G---RNINQ---S----------SVDS-GFAATANLTEDNFKY   82 (323)
Q Consensus        25 i~~~~~~~v~~G~~v~L~C~~~---~~~~v~W~~~--g---~~~~~---~----------~~~~-~~~~~~~~~~~~~~l   82 (323)
                      ++.|..+.+.+|++|+|.|...   ....+.|+|.  +   +.+..   .          .... +.....+.....+.|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            4567778899999999999943   3357999983  1   21111   0          0111 122233334556678


Q ss_pred             EEeecc--cCcceEEEee
Q psy15235         83 SIHEAI--LESGYVQSSL   98 (323)
Q Consensus        83 ~i~~~~--~~G~Y~C~~~   98 (323)
                      .|.+++  |+|.|.|.+.
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eecccCCCCCcEEEEeEc
Confidence            877765  5999999875

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.97  E-value=1.4e-05  Score=51.90  Aligned_cols=71  Identities=20%  Similarity=0.386  Sum_probs=48.2

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee---------------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF---------------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++.  |+.+.               .-.+|++++.  +.......|.|++++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~--D~s~n~~~L~~~~l~   86 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISK--DNSKSQVFLKMNSLH   86 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEE--EGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEec--cCCCceEEcceeeee
Confidence            456788999999999988643  35888873  22211               0123555552  222245679999999


Q ss_pred             cCCCeEEEEEEe
Q psy15235        275 MADRGNYYCHGN  286 (323)
Q Consensus       275 ~~d~G~y~C~a~  286 (323)
                      .+|.+.|.|.-.
T Consensus        87 ~eDTAvYYCAr~   98 (116)
T d1a2yb_          87 TDDTARYYCARE   98 (116)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             eccceEEEEEEe
Confidence            999999999754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.97  E-value=2.5e-05  Score=51.08  Aligned_cols=69  Identities=19%  Similarity=0.424  Sum_probs=48.2

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec------cc------cccccCcEE------eceeEEEEeeeec
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI------TE------ATELSGRLT------QSKDSITIRKTTV  175 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~------~~------~~~~~~~~~------~~~~~l~i~~~~~  175 (323)
                      ..++.+|++++|.|.+.+.... ...+.|+|.  |+.+      ..      .+..++|+.      .....|.|.+++.
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s-~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLC-TYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTC-CEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcCCCcc-CCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            3457789999999999886532 457889883  2211      10      233445665      2345799999999


Q ss_pred             CCCeeEEEEE
Q psy15235        176 DDAGQYSCRL  185 (323)
Q Consensus       176 ~d~G~y~C~~  185 (323)
                      +|++.|.|..
T Consensus        87 eDtA~YYCAr   96 (119)
T d1kxvc_          87 DDTAMYYCKP   96 (119)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCcceEeeee
Confidence            9999999976

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.97  E-value=3.4e-05  Score=49.43  Aligned_cols=65  Identities=23%  Similarity=0.325  Sum_probs=42.0

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ..|+..+|.|.+.++.|. ...|+|.+||..+...........      .....|.   +...+...|+|.+ .+.
T Consensus        17 ~~~~~~tL~C~~~gFyP~-~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~---v~~~~~~~ytC~V-~H~   87 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPP-VVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLT---FLPSADEIYDCKV-EHW   87 (99)
T ss_dssp             CTTSCEEEEEEEEEECSS-CCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEE---ECCCTTCCEEEEE-ECT
T ss_pred             cCCCcEEEEEEEEEEECC-CCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEE---EcCCCCCEEEEEE-EeC
Confidence            457889999999998765 589999999988754211111111      1122233   3345566899999 665

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.96  E-value=1.6e-05  Score=51.87  Aligned_cols=71  Identities=21%  Similarity=0.383  Sum_probs=48.3

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc------c-------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT------E-------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~------~-------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      ....++.+|++++|.|.+.|..-. ...+.|+|  .|+.+.      .       .+.+.+|+.      .....|.|.+
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~~-~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~   85 (115)
T d1f3dh1           7 SGPELVKPGASVKVSCKASGYSFI-DYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNS   85 (115)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             ECCcEECCCCCEEEEEEEccccCC-CCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeee
Confidence            344567889999999999875411 34688987  332211      0       123345654      2235699999


Q ss_pred             eecCCCeeEEEEE
Q psy15235        173 TTVDDAGQYSCRL  185 (323)
Q Consensus       173 ~~~~d~G~y~C~~  185 (323)
                      ++.+|++.|.|..
T Consensus        86 l~~eDtAvYYCAr   98 (115)
T d1f3dh1          86 LTFEDSAVYYCAN   98 (115)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCcCCcEEEEEec
Confidence            9999999999965

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.96  E-value=1.7e-05  Score=52.38  Aligned_cols=73  Identities=25%  Similarity=0.441  Sum_probs=49.9

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceee------ec----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTY------FR----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..  .-.+.|+|.  ++.+      ..          -.+|++++.  ++......|.+.++
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~--D~s~~t~yLq~~sL   85 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQ--DKAKNMAYLRMDSV   85 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEE--EGGGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEec--ccccceeeceeccc
Confidence            45677899999999998874  335899872  2211      11          124566652  22234567999999


Q ss_pred             CcCCCeEEEEEEeec
Q psy15235        274 TMADRGNYYCHGNNV  288 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~  288 (323)
                      +.+|++.|.|.....
T Consensus        86 ~~eDtAvYYCAr~~~  100 (124)
T d1zvya1          86 KSEDTAIYTCGATRK  100 (124)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             cCCcceEEEEeeccc
Confidence            999999999987543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.6e-05  Score=48.45  Aligned_cols=67  Identities=16%  Similarity=0.311  Sum_probs=42.4

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE---eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT---QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+..++|.|.+.++.|. ...|+|.++|..+...........   ..........+...+...|+|++ .+.
T Consensus        14 ~~~~~~L~C~~~gFyP~-~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V-~H~   83 (95)
T d1k5na1          14 SDHEATLRCWALGFYPA-EITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHV-QHE   83 (95)
T ss_dssp             ETTEEEEEEEEEEEBSS-CCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEE-ECT
T ss_pred             CCCCEEEEEEEEeEeCC-CCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEE-EEC
Confidence            35679999999998776 589999999988765222222222   11112222234445556899999 665

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.96  E-value=2.1e-05  Score=52.04  Aligned_cols=70  Identities=13%  Similarity=0.311  Sum_probs=47.2

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc-----------cccccCcEE-----eceeEEEEeeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE-----------ATELSGRLT-----QSKDSITIRKTT  174 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~-----------~~~~~~~~~-----~~~~~l~i~~~~  174 (323)
                      .|...++.+|++++|.|.....    ...+.|||  .|..+..           ......++.     .....|.|.++.
T Consensus         6 sP~~~~~~~G~~v~l~C~~~~~----~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           6 SSRYLVKRTGEKVFLECVQDMD----HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             SCSEEEEETTCCEEECEEESSC----CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             cCCEEEECCCCCEEEEEEEcCC----ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            5677778899999999986443    35789998  2321110           011112222     345689999999


Q ss_pred             cCCCeeEEEEEE
Q psy15235        175 VDDAGQYSCRLI  186 (323)
Q Consensus       175 ~~d~G~y~C~~~  186 (323)
                      .+|+|.|.|.+.
T Consensus        82 ~~Dsa~YyCa~~   93 (113)
T d1j8he1          82 TNQTSMYLCASS   93 (113)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCcccEEeeEc
Confidence            999999999983

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.96  E-value=1.7e-05  Score=52.45  Aligned_cols=70  Identities=20%  Similarity=0.350  Sum_probs=47.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc-----------cccccCcEE-----eceeEEEEeeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE-----------ATELSGRLT-----QSKDSITIRKTT  174 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~-----------~~~~~~~~~-----~~~~~l~i~~~~  174 (323)
                      .|...++.+|++++|.|......    ..+.|||.  |.....           ......++.     .....|+|.+++
T Consensus         7 ~P~~~~~~~G~~v~l~C~~~~~~----~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           7 SPRHIIKEKGGRSVLTCIPISGH----SNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   82 (113)
T ss_dssp             ECSEEEEETTCCCEEEEECCTTC----CEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred             cCCEEEEeCCCCEEEEEEeCCCC----CEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence            46667788999999999865433    47999983  221110           011122332     334679999999


Q ss_pred             cCCCeeEEEEEE
Q psy15235        175 VDDAGQYSCRLI  186 (323)
Q Consensus       175 ~~d~G~y~C~~~  186 (323)
                      .+|+|.|.|.++
T Consensus        83 ~~Dsa~YyCa~~   94 (113)
T d1nfdb1          83 LEDSAMYFCASS   94 (113)
T ss_dssp             GGGCEEECEEEE
T ss_pred             cCCceeEEEEee
Confidence            999999999883

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.96  E-value=2e-05  Score=52.21  Aligned_cols=73  Identities=14%  Similarity=0.334  Sum_probs=49.3

Q ss_pred             ceeEEeeCCeEEEEEEEecCCC--CcEEEEE--CCeeee----------------ccCCeeeeecCCCCCCcceeEEEee
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPP--PTVEWRI--GNDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ....+++|++++|+|.+.|..-  -.+.|++  .|+.+.                .-.+|+.++.  +.......|.|.+
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~--D~s~n~vyL~l~s   85 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTA--DRSSNTAFMYLNS   85 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEE--ETTTTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEec--ccCcceEeeeeec
Confidence            3456788999999999988642  3588876  222211                1124555652  2223456799999


Q ss_pred             cCcCCCeEEEEEEee
Q psy15235        273 ATMADRGNYYCHGNN  287 (323)
Q Consensus       273 v~~~d~G~y~C~a~n  287 (323)
                      ++.+|++.|.|....
T Consensus        86 L~~eDtAvYYCAR~~  100 (125)
T d1rihh1          86 LTSEDSAVYYCARES  100 (125)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCcccceEEEEeeeC
Confidence            999999999997553

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.96  E-value=2.1e-05  Score=52.15  Aligned_cols=73  Identities=15%  Similarity=0.341  Sum_probs=50.0

Q ss_pred             ceeEEeeCCeEEEEEEEecCCC--CcEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEee
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPP--PTVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ....+++|+++.|+|.+.|..-  -.+.|++  .|+.+.      .          -.+|+.++.  ++......|.+.+
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~--D~s~~tv~L~~~~   84 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTA--DQATSTAYMELTN   84 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEE--ETTTTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEec--cCCccEEEEEeec
Confidence            3456788999999999988642  3588887  232221      0          124666663  2333456799999


Q ss_pred             cCcCCCeEEEEEEee
Q psy15235        273 ATMADRGNYYCHGNN  287 (323)
Q Consensus       273 v~~~d~G~y~C~a~n  287 (323)
                      ++.+|++.|.|....
T Consensus        85 L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          85 LRSDDTAVYYCARDF   99 (130)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCcEEEEEEeec
Confidence            999999999997654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.96  E-value=2.5e-05  Score=50.90  Aligned_cols=72  Identities=14%  Similarity=0.313  Sum_probs=50.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|++++|.|.+.|..-. ...+.|+|.  |+.+      ..       .+..++|+.      .....|.|.
T Consensus         5 esg~~~~kPG~sl~LsC~~SG~~~~-~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~   83 (117)
T d1um5h1           5 QSGPVLVKPGGSVKMSCKASEYTLT-SYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELS   83 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEESSCCCS-CCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEccccCC-CCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccc
Confidence            3455678889999999999886422 457899883  3211      11       233455654      234568999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        84 sL~~eDtAvYYCAr   97 (117)
T d1um5h1          84 SLTSEDSAVYYCAR   97 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999976

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=1.7e-05  Score=52.07  Aligned_cols=72  Identities=14%  Similarity=0.275  Sum_probs=49.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc-------------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE-------------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~-------------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|++++|.|.+.+..-. ...+.|+|  .|+.+..             .+..++|+.      .....|.|.
T Consensus         6 qsg~~~vkpG~sl~LsC~~SG~s~~-~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~   84 (120)
T d1pg7x1           6 QSGPELVKPGASVKISCKASGYSFT-GHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELV   84 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCcEECCCCCEEEEEEEccccCC-CCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccc
Confidence            3445567889999999999875421 34688998  3332110             123455654      234568999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 ~l~~eDtA~YYCAr   98 (120)
T d1pg7x1          85 RLTSNDSAVYYCAR   98 (120)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEeee
Confidence            99999999999987

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.95  E-value=4.6e-05  Score=50.26  Aligned_cols=74  Identities=19%  Similarity=0.393  Sum_probs=50.7

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEE--CCeeee-------c---------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRI--GNDTYF-------R---------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~--~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..  .-.+.|.+  .|+.++       .         -.+|+.++.  +.......|.|.++
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSr--D~s~~t~yL~~~sL   86 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITA--DRSTSTAYLELNSL   86 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEec--cCccceEeeeeccc
Confidence            45577899999999998863  23488886  232221       1         124666663  22334577999999


Q ss_pred             CcCCCeEEEEEEeecc
Q psy15235        274 TMADRGNYYCHGNNVA  289 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~~  289 (323)
                      +.+|++.|.|......
T Consensus        87 ~~eDTavYYCAR~~~~  102 (127)
T d2fx7h1          87 RPEDTAVYYCAREGTT  102 (127)
T ss_dssp             CGGGCEEEEEEEEEES
T ss_pred             CcccceEEEEeecccc
Confidence            9999999999876544

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=2e-05  Score=51.34  Aligned_cols=72  Identities=19%  Similarity=0.384  Sum_probs=49.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+.+++|+.      .....|.+.
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~-~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~   84 (118)
T d2jelh1           6 QSGPELVRPGVSVKISCKGSGYTFT-TYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA   84 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCC-CCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence            3455667889999999999886522 34789987  33221      11       233345654      234568999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999955

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.94  E-value=1e-05  Score=51.85  Aligned_cols=69  Identities=23%  Similarity=0.435  Sum_probs=46.2

Q ss_pred             EEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee---------------ccCCeeeeecCCCCCCcceeEEEeecCcC
Q psy15235        216 TVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF---------------RSQGRIKLSEHPEKGTANSVLQIDEATMA  276 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  276 (323)
                      .+++|+++.|+|.+.|..  ...+.|++.  |+.++               .-.+|+.++.  +.......|+|.+++.+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSr--d~s~n~~~L~i~~l~~e   81 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISR--DNAKKTVYLEMNSLEPE   81 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEE--CTTTCCEEEEECSCCGG
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEec--CCceeEEEEeecCCCcc
Confidence            457899999999998752  335889873  22111               1124666663  23334577999999999


Q ss_pred             CCeEEEEEEe
Q psy15235        277 DRGNYYCHGN  286 (323)
Q Consensus       277 d~G~y~C~a~  286 (323)
                      |++.|.|...
T Consensus        82 DtAvYyCA~~   91 (107)
T d1sjva_          82 DTAVYYCYTH   91 (107)
T ss_dssp             GCSEEEEEEC
T ss_pred             cceeeeEecc
Confidence            9999999654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.94  E-value=3.3e-05  Score=50.84  Aligned_cols=75  Identities=19%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc----CceEEEEEc--Cccceee---------ccCcceEEEeeeeCCeEEEEEeecc
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI----FEQVKWQLN--GRNINQS---------SVDSGFAATANLTEDNFKYSIHEAI   88 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~----~~~v~W~~~--g~~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~   88 (323)
                      .+++|..+.+.+|++|+|.|....    ..-+.|+|.  ++.....         ....+.....+.....+.|.|.++.
T Consensus         3 vltQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~   82 (111)
T d1cd0a_           3 MLNQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLK   82 (111)
T ss_dssp             CEECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCC
T ss_pred             cEecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCC
Confidence            345666788999999999998432    235999993  3222111         1223344444555678888888876


Q ss_pred             --cCcceEEEee
Q psy15235         89 --LESGYVQSSL   98 (323)
Q Consensus        89 --~~G~Y~C~~~   98 (323)
                        |+|.|+|...
T Consensus        83 ~~Dsa~YyCA~~   94 (111)
T d1cd0a_          83 TEDEADYYCQSY   94 (111)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccCcEEEEeec
Confidence              4999999864

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=5.7e-06  Score=53.70  Aligned_cols=70  Identities=20%  Similarity=0.292  Sum_probs=44.8

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++.++|.|.+.|+ |.. .++|.+||............. ..++ ....+.|+|..-.......|+|.+.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~-~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVL-DSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEE-CTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEE-CCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            36789999999875 543 799999998754211111111 0111 1345678887665555557999999975

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=5.1e-05  Score=49.98  Aligned_cols=72  Identities=14%  Similarity=0.217  Sum_probs=46.4

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEE--CCeeee------cc--------CCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRI--GNDTYF------RS--------QGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~~~------~~--------~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      |....+.+|++++|.|..... ...+.||+  .++.+.      ..        ..++...   ........|+|.++..
T Consensus         6 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVS---RSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEEC---CSSSSBCCEEESSCCG
T ss_pred             CCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEe---cCCCCEEEEEECCCCH
Confidence            445568899999999988533 45699998  222211      00        0111111   1112356899999999


Q ss_pred             CCCeEEEEEEee
Q psy15235        276 ADRGNYYCHGNN  287 (323)
Q Consensus       276 ~d~G~y~C~a~n  287 (323)
                      +|+|.|.|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999998764

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.94  E-value=2.3e-05  Score=50.93  Aligned_cols=70  Identities=21%  Similarity=0.411  Sum_probs=49.1

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc------cccccCcEE------eceeEEEEeeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ...++.+|++++|.|.+.+..-. ...+.|+|  .|+.+      ..      .+..++|+.      .....|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~-~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~   86 (116)
T d7fabh1           8 GPGLVRPSQTLSLTCTVSGTSFD-DYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVT   86 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCST-TSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEeeecCC-CCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccc
Confidence            34567789999999999886432 45788987  33211      11      233455654      234678999999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        87 ~eDtAvYyCAr   97 (116)
T d7fabh1          87 AADTAVYYCAR   97 (116)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccceEEEeee
Confidence            99999999977

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.1e-05  Score=51.44  Aligned_cols=71  Identities=15%  Similarity=0.319  Sum_probs=45.9

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ..+.++|.|.+.|+ |.. .++|.+||..+..............++  ...+.|+|..-..+....|+|.+.+..
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35789999999775 544 799999998764321111111111111  345678887666555668999999976

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=2.8e-05  Score=50.50  Aligned_cols=70  Identities=19%  Similarity=0.362  Sum_probs=49.4

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc------------cccccCcEE------eceeEEEEeeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE------------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~------------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ...++.+|++++|.|.+.|..-. ...+.|+|  .|+.+..            .+..++|+.      .+...|.+.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~-~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~   86 (117)
T d1c5db1           8 GPGLVQPSQTLSLTCTVSGFPLT-TNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (117)
T ss_dssp             CCSEECTTSCEEEEEEECSSCTT-TCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCCCcc-CCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccc
Confidence            34567889999999999886532 35788987  3332211            234456665      234678999999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        87 ~eDtAvYYCAr   97 (117)
T d1c5db1          87 TEDTAIYFCTR   97 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceEEEEec
Confidence            99999999966

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.93  E-value=2.9e-05  Score=50.56  Aligned_cols=71  Identities=23%  Similarity=0.297  Sum_probs=48.7

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee---------------ccCCeeeeecCCCCCCcceeEEEeecC
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF---------------RSQGRIKLSEHPEKGTANSVLQIDEAT  274 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v~  274 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++.  |+.+.               .-.+|++++.  ++......|.|.+++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSr--D~s~nt~~L~i~~l~   86 (118)
T d1lo4h1           9 GDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISR--DIVRNILTLQMSRLR   86 (118)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEE--ETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEec--cccceeeeecccccc
Confidence            345788999999999998743  35889872  22221               1123556653  222345679999999


Q ss_pred             cCCCeEEEEEEe
Q psy15235        275 MADRGNYYCHGN  286 (323)
Q Consensus       275 ~~d~G~y~C~a~  286 (323)
                      .+|++.|.|...
T Consensus        87 ~eDtA~YyCAr~   98 (118)
T d1lo4h1          87 SEDTAIYYCARG   98 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEeccc
Confidence            999999999754

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.9e-06  Score=54.51  Aligned_cols=71  Identities=20%  Similarity=0.336  Sum_probs=44.7

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++.++|.|.+.|+ |.. .+.|++||..+.............++ ....+.|+|..-.......|+|.+.+..
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            36779999999875 543 79999999876532111111111111 1245677777665555567999999976

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.93  E-value=1.6e-05  Score=51.87  Aligned_cols=71  Identities=17%  Similarity=0.388  Sum_probs=47.7

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceee------ec----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTY------FR----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++.  |+.+      ..          -.+|+.++.  +.......|.|.++
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSr--D~s~nt~~L~~~sL   86 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTA--DQSSSTAYMQLNSL   86 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEE--EGGGTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEc--ccCcceEEeeeecc
Confidence            455778999999999998743  35889872  2221      10          123555552  22223567999999


Q ss_pred             CcCCCeEEEEEEe
Q psy15235        274 TMADRGNYYCHGN  286 (323)
Q Consensus       274 ~~~d~G~y~C~a~  286 (323)
                      +.+|.+.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (119)
T d1eapb1          87 TSEDSAVYFCKRS   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cCCcceEEEEEEe
Confidence            9999999999643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.93  E-value=3.5e-05  Score=50.78  Aligned_cols=74  Identities=11%  Similarity=0.043  Sum_probs=46.2

Q ss_pred             EEeeceEEecCCcEEEEEEe-ccCceEEEEEc--Ccccee--e----------ccCcceEEEeeeeCCeEEEEEeecc--
Q psy15235         26 TYFGDTEIMEGAPINISCIL-TIFEQVKWQLN--GRNINQ--S----------SVDSGFAATANLTEDNFKYSIHEAI--   88 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~-~~~~~v~W~~~--g~~~~~--~----------~~~~~~~~~~~~~~~~~~l~i~~~~--   88 (323)
                      +.|..+.+.+|++|+|.|.. .....+.|||.  ++....  .          ....+...........+.|.|.++.  
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPISGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE   83 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence            34666788999999999983 34568999993  222111  0          0112222222333456778887765  


Q ss_pred             cCcceEEEeec
Q psy15235         89 LESGYVQSSLF   99 (323)
Q Consensus        89 ~~G~Y~C~~~~   99 (323)
                      |+|.|+|....
T Consensus        84 Dsa~YyCa~~~   94 (112)
T d1kgce1          84 DSAVYLCASSL   94 (112)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCEEEEEeeeC
Confidence            49999999854

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=3e-05  Score=51.64  Aligned_cols=75  Identities=8%  Similarity=-0.031  Sum_probs=47.9

Q ss_pred             eEEEeeceEEecCCcEEEEEEecc---C--ceEEEEEc--Cccc--eee--------ccCcceEEEeeeeCCeEEEEEee
Q psy15235         24 KITYFGDTEIMEGAPINISCILTI---F--EQVKWQLN--GRNI--NQS--------SVDSGFAATANLTEDNFKYSIHE   86 (323)
Q Consensus        24 ~i~~~~~~~v~~G~~v~L~C~~~~---~--~~v~W~~~--g~~~--~~~--------~~~~~~~~~~~~~~~~~~l~i~~   86 (323)
                      ++.+|..+.+.+|++|+|.|....   .  ..+.|+|.  |+..  ...        ....+.....+.....+.|.|.+
T Consensus         2 ~VtQP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   81 (117)
T d1dqta_           2 QVTQPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQG   81 (117)
T ss_dssp             EEECCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECS
T ss_pred             EEECCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhc
Confidence            456677788899999999999432   1  24789993  3221  110        01122223444556677888887


Q ss_pred             ccc--CcceEEEee
Q psy15235         87 AIL--ESGYVQSSL   98 (323)
Q Consensus        87 ~~~--~G~Y~C~~~   98 (323)
                      ++.  +|.|.|.+.
T Consensus        82 l~~~Dsa~YyCa~~   95 (117)
T d1dqta_          82 LRAVDTGLYLCKVE   95 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CccccCEeEEEEEe
Confidence            765  999999885

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=5.8e-06  Score=56.05  Aligned_cols=73  Identities=14%  Similarity=0.238  Sum_probs=46.3

Q ss_pred             eeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCe---eeeec-CCCC--CCcceeEEEeecCcCCCe-EEEEEEeec
Q psy15235        218 IEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGR---IKLSE-HPEK--GTANSVLQIDEATMADRG-NYYCHGNNV  288 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~---~~~~~-~~~~--~~~~~~L~i~~v~~~d~G-~y~C~a~n~  288 (323)
                      ..+..++|.|.+.|+ |.. .|+|++||..+......   ..... ...+  ....+.|.|..-..++.| .|+|.+.+.
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            346789999999875 544 69999999877421100   00000 0011  123477888877766766 699999997


Q ss_pred             cc
Q psy15235        289 AT  290 (323)
Q Consensus       289 ~g  290 (323)
                      ..
T Consensus        98 ~l   99 (127)
T d1ogae2          98 GL   99 (127)
T ss_dssp             CB
T ss_pred             CC
Confidence            64

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.92  E-value=2.4e-05  Score=51.62  Aligned_cols=72  Identities=22%  Similarity=0.335  Sum_probs=46.6

Q ss_pred             eceeEEeeCCeEEEEEEEecC---C---CCcEEEEEC--Ceeee-----------ccCCeeeeecCCCCCCcceeEEEee
Q psy15235        212 VETLTVIEGEKLRLECLVVGS---P---PPTVEWRIG--NDTYF-----------RSQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~---p---~~~~~W~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      |....+.+|++++|.|...+.   .   ...+.||+.  |..+.           ....++....    ......|+|.+
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~----s~~~~~L~I~~   83 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG----SGTDFTLTITS   83 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ETTEEEEEESS
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeC----CCCeEeEEecc
Confidence            456678899999999987542   1   124999983  22111           1112222221    11356799999


Q ss_pred             cCcCCCeEEEEEEee
Q psy15235        273 ATMADRGNYYCHGNN  287 (323)
Q Consensus       273 v~~~d~G~y~C~a~n  287 (323)
                      ++.+|+|.|.|.+.+
T Consensus        84 l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          84 VQAEDLAVYYCKQSY   98 (113)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             cccCCCeEEEecccC
Confidence            999999999998764

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.92  E-value=3.4e-05  Score=50.86  Aligned_cols=73  Identities=19%  Similarity=0.388  Sum_probs=50.0

Q ss_pred             ceeEEeeCCeEEEEEEEecCCCC--cEEEEE--CCeee------ec----------cCCeeeeecCCCCCCcceeEEEee
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPPP--TVEWRI--GNDTY------FR----------SQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ....+++|+++.|+|.+.|..-.  .+.|++  .|+.+      ..          -.+|+.++.  +.......|.+.+
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~--D~s~nt~yL~m~~   84 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTA--DTSSNIAYMQLSS   84 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE--ETTTTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEe--cCCccEEEeeecc
Confidence            34567889999999999987433  488877  22221      10          135666653  2223467899999


Q ss_pred             cCcCCCeEEEEEEee
Q psy15235        273 ATMADRGNYYCHGNN  287 (323)
Q Consensus       273 v~~~d~G~y~C~a~n  287 (323)
                      ++.+|.+.|.|....
T Consensus        85 L~~eDTAvYYCAr~~   99 (126)
T d1lmka1          85 LTSEDSAVYYCARGE   99 (126)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cCCCcceEEEEeecC
Confidence            999999999997543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.92  E-value=2.8e-05  Score=50.90  Aligned_cols=70  Identities=21%  Similarity=0.400  Sum_probs=48.5

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceecc------c------cccccCcEE------eceeEEEEeeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSIT------E------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~------~------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ...++.+|+++.|.|.+.|+.-. ...+.|+|.  |+.+.      .      .+..++|+.      .....|.|.+++
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~-~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~   86 (120)
T d1dn0b1           8 GAGLLKPSETLSLTCAVYGGSFS-DYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (120)
T ss_dssp             CCCEECTTSCEEEEEEEESSCCS-SCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccCc-cCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccc
Confidence            34567889999999999986522 457889883  32211      1      233456665      234569999999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        87 ~eDtA~YYCAr   97 (120)
T d1dn0b1          87 AADTAVYYCAR   97 (120)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccccEEEEEe
Confidence            99999999954

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.91  E-value=2.7e-05  Score=51.26  Aligned_cols=73  Identities=21%  Similarity=0.348  Sum_probs=49.3

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCC--cEEEEE--CCeeee----------------ccCCeeeeecCCCCCCcceeEEEe
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPP--TVEWRI--GNDTYF----------------RSQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      +....+++|+++.|+|.+.|..-.  .+.|++  .|+.+.                .-.+|+.++.  +.......|.+.
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSr--D~s~~t~yL~~~   84 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSA--DRSTNTAHLQWS   84 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEE--ETTTTEEEEEES
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEee--cCCCcEEEEeee
Confidence            334567889999999999987432  488887  222211                0124566653  222345779999


Q ss_pred             ecCcCCCeEEEEEEe
Q psy15235        272 EATMADRGNYYCHGN  286 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~  286 (323)
                      +++.+|.+.|.|...
T Consensus        85 ~L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          85 SLKPSDTALYYCARL   99 (124)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccccceEEEEeec
Confidence            999999999999543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.91  E-value=2.8e-05  Score=50.34  Aligned_cols=72  Identities=19%  Similarity=0.373  Sum_probs=50.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|+++.|.|.+.|+.-. ...+.|+|  .|+.+      ..       .+..++|+.      .....|.+.
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~-~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~   84 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFT-NYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCcEECCCCCEEEEEEEccCccc-cCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence            5566778899999999999986532 35788987  23211      10       233445654      234578899


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          85 SLTSDDSAVYYCAN   98 (116)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEcc
Confidence            99999999999965

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.91  E-value=5.2e-05  Score=47.69  Aligned_cols=63  Identities=13%  Similarity=0.254  Sum_probs=40.5

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeecccccc-----ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE-----LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+..++|.|.+.|+.|. ...|+|.++|..+.....     .++.+ .....|.+   ...+...|+|++ .+.
T Consensus        14 ~~~~~~L~C~~~gF~P~-~i~v~W~~ng~~~~~~~~~~~~~~dgty-~~~S~l~v---~~~~~~~ytC~V-~H~   81 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPP-ELKFRFLRNGLASGSGNCSTGPNGDGSF-HAWSLLEV---KRGDEHHYQCQV-EHE   81 (91)
T ss_dssp             STTEEEEEEEEEEEBSS-CCEEEEEETTEECCCCEEEEEECSSSCE-EEEEEEEE---ETTCGGGEEEEE-ECT
T ss_pred             CCCCEEEEEEEEeEECC-CCEEEEEECCEeCCccCccceecCCCCE-eEEEEEEE---CCCCCCEEEEEE-EeC
Confidence            35679999999998765 589999999987754100     01111 11223333   345666899999 665

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=4.5e-05  Score=50.17  Aligned_cols=73  Identities=14%  Similarity=0.207  Sum_probs=45.2

Q ss_pred             EEeeceEEecCCcEEEEEEe-ccCceEEEEEc--Cccceee------------ccCcceEEEeeeeCCeEEEEEeeccc-
Q psy15235         26 TYFGDTEIMEGAPINISCIL-TIFEQVKWQLN--GRNINQS------------SVDSGFAATANLTEDNFKYSIHEAIL-   89 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~-~~~~~v~W~~~--g~~~~~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~-   89 (323)
                      +.|..+.+.+|++|+|.|.. .....+.|||.  |+.+..-            ................+.|.|.++.. 
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   83 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELE   83 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTTCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGG
T ss_pred             ECCCEEEECCCCCEEEEEEECCCCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccC
Confidence            34667889999999999983 33467999983  3322110            01112222222234456788887654 


Q ss_pred             -CcceEEEee
Q psy15235         90 -ESGYVQSSL   98 (323)
Q Consensus        90 -~G~Y~C~~~   98 (323)
                       +|.|+|...
T Consensus        84 Dsa~YyCa~~   93 (111)
T d2esve1          84 DSGVYFCASS   93 (111)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCceEEEeee
Confidence             999999864

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.91  E-value=4.9e-05  Score=50.05  Aligned_cols=74  Identities=23%  Similarity=0.349  Sum_probs=50.1

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee----------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++.  |+.+.                .-.+|+.++.  ++......|.|.++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~--D~s~nt~~L~~~~L   86 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISR--DNAKNSLYLQMNSL   86 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEec--cCCCcEEEeeeeee
Confidence            456788999999999988743  25888872  22211                0124556653  22234577999999


Q ss_pred             CcCCCeEEEEEEeecc
Q psy15235        274 TMADRGNYYCHGNNVA  289 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~~  289 (323)
                      +.+|++.|.|......
T Consensus        87 ~~eDtavYYCAr~~~~  102 (126)
T d1dfbh1          87 RAEDMALYYCVKGRDY  102 (126)
T ss_dssp             CGGGCEEEEEEEEECC
T ss_pred             ccCcceEEEEEeccCc
Confidence            9999999999765433

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.91  E-value=4.6e-05  Score=49.71  Aligned_cols=72  Identities=24%  Similarity=0.439  Sum_probs=48.8

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEE--CCeeee------c------------cCCeeeeecCCCCCCcceeEEEe
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRI--GNDTYF------R------------SQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~--~~~~~~------~------------~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      ...+++|+++.|+|.+.|..  .-.+.|++  .|+.+.      .            -.+|++++.  +.......|.|.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~--D~s~n~~~L~~~   86 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISR--DDSKRRVYLQMN   86 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEE--ETTTTEEEEEEC
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeec--ccccceecccee
Confidence            44578899999999998864  33588987  333221      0            013555552  222245679999


Q ss_pred             ecCcCCCeEEEEEEee
Q psy15235        272 EATMADRGNYYCHGNN  287 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~n  287 (323)
                      +++.+|++.|.|....
T Consensus        87 ~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          87 TLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             SCCGGGCEEEEEEEEB
T ss_pred             eccCCCceEEEeeEec
Confidence            9999999999996544

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.91  E-value=3.8e-05  Score=49.84  Aligned_cols=72  Identities=8%  Similarity=0.135  Sum_probs=46.2

Q ss_pred             EeeceEEecCCcEEEEEEec-cCceEEEEEc--Cccceee-------ccCcceEEEeeeeCCeEEEEEeeccc--CcceE
Q psy15235         27 YFGDTEIMEGAPINISCILT-IFEQVKWQLN--GRNINQS-------SVDSGFAATANLTEDNFKYSIHEAIL--ESGYV   94 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~--g~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~~--~G~Y~   94 (323)
                      .|..+.+.+|++|+|.|... ....+.||+.  ++.....       .......+........+.|.|.++..  +|.|+
T Consensus         6 sP~~l~~~~G~~vtl~C~~s~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (104)
T d1yqvl1           6 SPAIMSASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYY   85 (104)
T ss_dssp             ESSEEEECTTCCEEEEEEESSCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cCCeEEECCCCCEEEEEEeCCCCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEE
Confidence            45667899999999999943 3346899993  2211111       01111223344456778888888765  99999


Q ss_pred             EEee
Q psy15235         95 QSSL   98 (323)
Q Consensus        95 C~~~   98 (323)
                      |...
T Consensus        86 Ca~~   89 (104)
T d1yqvl1          86 CQQW   89 (104)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9764

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.91  E-value=2.1e-05  Score=51.15  Aligned_cols=71  Identities=17%  Similarity=0.367  Sum_probs=48.7

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCee------ccc-------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKS------ITE-------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~------~~~-------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      ....++.+|+++.|.|.+.|..-. ...+.|+|  .|+-      +..       .+..++|+.      .....|.+.+
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~~-~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~   85 (118)
T d1nlbh1           7 SGPELKKPGETVKISCKASGYTFT-DFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINS   85 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEEcCCCCC-CCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeee
Confidence            344567889999999999885422 34688987  2321      111       233455665      2345689999


Q ss_pred             eecCCCeeEEEEE
Q psy15235        173 TTVDDAGQYSCRL  185 (323)
Q Consensus       173 ~~~~d~G~y~C~~  185 (323)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (118)
T d1nlbh1          86 LKNEDTATYFCAR   98 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCcceEEEEee
Confidence            9999999999965

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.90  E-value=3.3e-05  Score=50.21  Aligned_cols=71  Identities=17%  Similarity=0.334  Sum_probs=49.4

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      ....++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+.+++|+.      .....|.+.+
T Consensus         7 sG~~~~kpg~sl~lsC~~SG~~~~-~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~   85 (117)
T d1jnhb1           7 SGAELARPGASVKLSCRTSGYSFT-TYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNS   85 (117)
T ss_dssp             CCCEECCTTCCEEEEEEEESSCSS-SSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEEcCCCCC-CCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccc
Confidence            344567789999999999986432 45789988  23211      11       233456665      2345689999


Q ss_pred             eecCCCeeEEEEE
Q psy15235        173 TTVDDAGQYSCRL  185 (323)
Q Consensus       173 ~~~~d~G~y~C~~  185 (323)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (117)
T d1jnhb1          86 LTSEDSAVYSCSR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999966

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.90  E-value=3.7e-05  Score=50.45  Aligned_cols=72  Identities=24%  Similarity=0.397  Sum_probs=48.6

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee----------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..  .-.+.|++.  |+.+.                .-.+|+.++.  ++......|.|.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~--D~s~~~~~L~i~sL   86 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISR--DNSKNTLYLQMNSL   86 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEec--cccceeEEeeeeec
Confidence            35578899999999998763  225888862  22211                1123555653  22224567999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|++.|.|....
T Consensus        87 ~~eDtAvYYCAr~~  100 (121)
T d1ol0a_          87 RAEDTAVYYCAREP  100 (121)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             ccccceEEEEEEec
Confidence            99999999997554

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.90  E-value=1.7e-05  Score=52.95  Aligned_cols=71  Identities=17%  Similarity=0.248  Sum_probs=45.8

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Cee---cc---c------cccccCcEE------eceeEEEEeee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKS---IT---E------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~---~~---~------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      +......+|++++|.|.+.+..-. ...+.|||.  |..   +.   .      .....+++.      .....|+|.++
T Consensus         8 ~~sv~~~~G~svtL~C~~~~~~~~-~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l   86 (120)
T d1ypzf1           8 EISISRPRDETAQISCKVFIESFR-SVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL   86 (120)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGG-GCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred             CCEEEecCCCcEEEEEEEeccccc-CCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccc
Confidence            344556789999999987653210 346899982  221   10   0      012233443      23467999999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|+|.|.|..
T Consensus        87 ~~~Dsa~YyCA~   98 (120)
T d1ypzf1          87 EEEDEAIYYCSY   98 (120)
T ss_dssp             CGGGCSEEEEEE
T ss_pred             ccccceeEEEEE
Confidence            999999999987

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.90  E-value=2.3e-05  Score=51.64  Aligned_cols=69  Identities=19%  Similarity=0.327  Sum_probs=46.2

Q ss_pred             eEEecCCcEEEEEEeecCCCCC-CceEEEEEC--Ceeccc------------cccccCcEE------eceeEEEEeeeec
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGD-DYQIVWYKG--NKSITE------------ATELSGRLT------QSKDSITIRKTTV  175 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~~--~~~~~~------------~~~~~~~~~------~~~~~l~i~~~~~  175 (323)
                      .++.+|++++|.|.+.|+.-.. ...+.|||.  |+.+..            .+..++|+.      .....|+|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            4467799999999987743110 246889973  322110            122345665      2346799999999


Q ss_pred             CCCeeEEEEE
Q psy15235        176 DDAGQYSCRL  185 (323)
Q Consensus       176 ~d~G~y~C~~  185 (323)
                      +|++.|.|..
T Consensus        90 eDsAvYyCAr   99 (120)
T d2agjh1          90 VDTATYYCAR   99 (120)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccceEEeeEe
Confidence            9999999976

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=6.4e-06  Score=53.29  Aligned_cols=69  Identities=14%  Similarity=0.279  Sum_probs=44.6

Q ss_pred             CCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCC-CCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        220 GEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEK-GTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       220 g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.++|.|.+.|+ |.. .+.|++||..+.......... ..++ ....+.|+|..-.......|+|.+.+..
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~-~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIM-DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEE-CTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeec-CCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            5678999999875 543 799999998764211111111 0111 1345778887666556678999999975

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.90  E-value=3.3e-05  Score=50.42  Aligned_cols=72  Identities=24%  Similarity=0.405  Sum_probs=49.3

Q ss_pred             eeEEeeCCeEEEEEEEecCCCC---cEEEEE--CCeeee---------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPP---TVEWRI--GNDTYF---------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~---~~~W~~--~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-.   .+.|.|  .|+.+.               .-.+|++++.  +.......|.+.++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~--D~s~nt~~L~~~sL   86 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITR--DTSKNQFFLQLNSV   86 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEec--ccccceeecccccc
Confidence            4567889999999999987532   378876  333221               1124556653  22224577999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|...|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          87 TTEDTATYYCAGLL  100 (119)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCCceEEEEeEec
Confidence            99999999997544

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.90  E-value=2.9e-05  Score=50.64  Aligned_cols=72  Identities=15%  Similarity=0.357  Sum_probs=49.4

Q ss_pred             eeEEeeCCeEEEEEEEecCCCC--cEEEEEC--Ceeee----------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPP--TVEWRIG--NDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|.|.+.|..-.  .+.|.+.  |+.+.                .-.+|++++.  +...+...|.++++
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~--D~s~nt~~L~m~~L   86 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTV--DTSTNTAYMELSSL   86 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEe--cCcceEEecccccc
Confidence            4567889999999999886433  5888762  22211                1135666663  23334678999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (120)
T d1ad9b1          87 RSEDTAFYFCAREK  100 (120)
T ss_dssp             CGGGCEEEEEEEEB
T ss_pred             CCCcceEEEEEEcC
Confidence            99999999997543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.90  E-value=3.1e-05  Score=50.81  Aligned_cols=73  Identities=23%  Similarity=0.378  Sum_probs=48.7

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++  .|+.+.      .          -.+|+.++.  +.......|.|.++
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~--D~s~nt~~L~i~~L   86 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISR--DNAKNTLYLQMSSL   86 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEE--EGGGTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEe--cCcccccccceeee
Confidence            456788999999999988643  3588887  222211      0          123555552  22223466999999


Q ss_pred             CcCCCeEEEEEEeec
Q psy15235        274 TMADRGNYYCHGNNV  288 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~  288 (323)
                      +.+|++.|.|.....
T Consensus        87 ~~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          87 KSEDTAMYYCVRHEY  101 (123)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ccCcccceeEEecCC
Confidence            999999999976543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.90  E-value=4.2e-05  Score=50.55  Aligned_cols=73  Identities=19%  Similarity=0.385  Sum_probs=50.1

Q ss_pred             eeEEeeCCeEEEEEEEecCCCC--cEEEEE--CCeeee----------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPP--TVEWRI--GNDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-.  .+.|++  .++.+.                .-.+|++++.  ++......|.+.++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~--D~s~~t~yL~~~sL   86 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITA--DKSTSTVYLELRNL   86 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEee--cCCCceEEeeeeec
Confidence            4567889999999999987433  477866  221111                1135666663  22234577999999


Q ss_pred             CcCCCeEEEEEEeec
Q psy15235        274 TMADRGNYYCHGNNV  288 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~  288 (323)
                      +.+|.+.|.|.....
T Consensus        87 ~~eDTA~YYCAr~~~  101 (128)
T d2nxyd1          87 RSDDTAVYFCAGVYE  101 (128)
T ss_dssp             CGGGCEEEEEEEEEC
T ss_pred             cccCceEEEEeEEec
Confidence            999999999987653

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.90  E-value=3e-05  Score=50.54  Aligned_cols=71  Identities=18%  Similarity=0.400  Sum_probs=47.2

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..  .-.+.|.|  .|+.++      .          -..|+.++.  +.......|.|.++
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~--D~s~~t~yL~i~~L   86 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTV--DTSSSTAYMQFSSL   86 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEE--EGGGTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEe--cCccceEEeccccc
Confidence            45678899999999998864  23588876  232221      1          123444442  22224567999999


Q ss_pred             CcCCCeEEEEEEe
Q psy15235        274 TMADRGNYYCHGN  286 (323)
Q Consensus       274 ~~~d~G~y~C~a~  286 (323)
                      +.+|.+.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (118)
T d1ct8b1          87 TTEDSAIYYCARY   99 (118)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeee
Confidence            9999999999654

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.90  E-value=2.3e-05  Score=50.91  Aligned_cols=70  Identities=16%  Similarity=0.326  Sum_probs=48.8

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Cee------ccc-------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKS------ITE-------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~------~~~-------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|+++.|.|.+.|..-. ...+.|+|.  |+.      |..       .+..++|+.      .+...|.+.++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~-~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L   86 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIK-EYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSL   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEcCCCCc-CCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEeccccc
Confidence            34567889999999999986522 457889872  321      111       233456665      33456889999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (117)
T d1jpth1          87 RAEDTAVYYCAR   98 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEee
Confidence            999999999966

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.90  E-value=1.7e-05  Score=52.05  Aligned_cols=72  Identities=21%  Similarity=0.344  Sum_probs=48.9

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--C--cEEEEEC--Ceeee------cc---------CCeeeeecCCCCCCcceeEEEee
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--P--TVEWRIG--NDTYF------RS---------QGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~--~~~W~~~--~~~~~------~~---------~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ...+++|++++|+|.+.|...  .  .+.|+|.  |+.+.      ..         .+|++++.+  .......|.|.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD--~s~n~~~L~~~s   86 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRD--TSLNKFFIQLIS   86 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEE--TTTTEEEEEESS
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccc--cccceeecceee
Confidence            455788999999999988632  2  4789872  32221      11         246666632  222456799999


Q ss_pred             cCcCCCeEEEEEEee
Q psy15235        273 ATMADRGNYYCHGNN  287 (323)
Q Consensus       273 v~~~d~G~y~C~a~n  287 (323)
                      ++.+|++.|.|....
T Consensus        87 L~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          87 VTNEDTAMYYCSREN  101 (120)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             eeccceeEEEEEecC
Confidence            999999999997543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=2.3e-05  Score=51.68  Aligned_cols=69  Identities=16%  Similarity=0.364  Sum_probs=46.3

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeeccc-----------cccccCcEE-----eceeEEEEeeee
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSITE-----------ATELSGRLT-----QSKDSITIRKTT  174 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~~-----------~~~~~~~~~-----~~~~~l~i~~~~  174 (323)
                      .|...++.+|++++|.|.....    ...+.|||  .|+....           ......++.     .....|.|.++.
T Consensus         5 ~P~~~~~~~G~svtl~C~~s~~----~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           5 TPKFQVLKTGQSMTLQCAQDMN----HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             ECSEEEEETTCCEEEEEEESSC----CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             CCCeEEECCCCCEEEEEEEECC----ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            3566678899999999987553    35799998  2321110           011111221     234579999999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      ++|+|.|.|.+
T Consensus        81 ~~DsavYyCA~   91 (112)
T d2bnub1          81 PSQTSVYFCAS   91 (112)
T ss_dssp             GGGCEEEEEEE
T ss_pred             HHHCEEEEEee
Confidence            99999999987

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.89  E-value=2.9e-05  Score=51.01  Aligned_cols=72  Identities=21%  Similarity=0.327  Sum_probs=48.6

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee----------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++.  |+.+.                .-.+|++++.  +.......|.|+++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSr--D~s~~t~yL~m~sL   86 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISR--DNPKNTLFLQMTSL   86 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEE--EGGGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEec--cCCccEeEeeeeee
Confidence            455778999999999998743  35888872  22211                0124555552  22223567999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|.+.|.|...+
T Consensus        87 ~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          87 RSEDTAIYYCTRGG  100 (122)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCceEEEeecCC
Confidence            99999999997644

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.89  E-value=2.8e-05  Score=50.65  Aligned_cols=72  Identities=13%  Similarity=0.289  Sum_probs=49.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|++++|.|.+.|+.-. ..-+.|+|  .|+-+      ..       .+.+..|+.      .....|.|.
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s-~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~   84 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFT-NYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS   84 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcccCCC-CCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeec
Confidence            4555677889999999999886422 45788987  33321      10       123344544      233568999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            99999999999965

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.89  E-value=2.2e-05  Score=51.82  Aligned_cols=72  Identities=15%  Similarity=0.357  Sum_probs=48.3

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCC--cEEEEE--CCeeee-------c---------cCCeeeeecCCCCCCcceeEEEe
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPP--TVEWRI--GNDTYF-------R---------SQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~--~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      +....+++|+++.|+|.+.|..-.  .+.|++  .|+.+.       .         -.+|++++.  +.......|.+.
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~--D~s~nt~yL~~~   84 (127)
T d1n0xh1           7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTA--DTSANTAYMELR   84 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEE--EGGGTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEec--ccCceEEEEEEE
Confidence            334567889999999999986433  488887  222211       0         123555552  222235679999


Q ss_pred             ecCcCCCeEEEEEE
Q psy15235        272 EATMADRGNYYCHG  285 (323)
Q Consensus       272 ~v~~~d~G~y~C~a  285 (323)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          85 SLRSADTAVYYCAR   98 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEEe
Confidence            99999999999964

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.89  E-value=3.3e-05  Score=50.83  Aligned_cols=72  Identities=17%  Similarity=0.342  Sum_probs=49.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc------c-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT------E-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~------~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|++++|.|.+.|..-. ...+.|+|  .|+.+.      .       .+..++|+.      .....|.|.
T Consensus         6 esg~~~~kpG~sv~LsC~~SG~~~s-~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~   84 (121)
T d1j05b_           6 QSGAELVEPGASVKLSCTASGFNIK-DTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLT   84 (121)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEecCCCC-CCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccc
Confidence            3445668899999999999875421 34788987  333211      0       123455664      234568999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (121)
T d1j05b_          85 SLTSEDTAVYYCAP   98 (121)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCcCcceEEEeEe
Confidence            99999999999976

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=1.8e-05  Score=48.29  Aligned_cols=67  Identities=16%  Similarity=0.450  Sum_probs=47.3

Q ss_pred             eeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCc-CCCeEEEEEEeecccCCCCCc
Q psy15235        218 IEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM-ADRGNYYCHGNNVATRNSQPN  296 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~y~C~a~n~~g~~~~~~  296 (323)
                      ..|.+|+|+|...+  .-.+.|.+|+..+....              ...|++.+... +++|-|.|...+..      .
T Consensus        12 ISGTtV~LTCP~~~--~~~I~Wkkn~~~i~g~~--------------~~~L~L~~FSE~e~SGyY~C~~~~~~------~   69 (100)
T d1jbja2          12 ISGTSVELTCPLDS--DENLKWEKNGQELPQKH--------------DKHLVLQDFSEVEDSGYYVCYTPASN------K   69 (100)
T ss_dssp             EETTEEEEECSSCC--CTTCEEEETTEEECSCC--------------CSEEEEESCCTTTSCEEEEEECSSCC------C
T ss_pred             EeCCEEEEECCCCC--CCceEEeeccccCCCCC--------------CcEEEEccccccccCcceEEecCCCC------c
Confidence            35999999998754  35699999999886542              34677777655 79999999644333      4


Q ss_pred             eeEEEEEEcc
Q psy15235        297 EAFVYVRVKG  306 (323)
Q Consensus       297 ~~~~~l~v~~  306 (323)
                      ...++|....
T Consensus        70 ~~~LYLKARV   79 (100)
T d1jbja2          70 NTYLYLKARV   79 (100)
T ss_dssp             CCCEEECCCC
T ss_pred             ceEEEEEEEE
Confidence            4556665443

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.88  E-value=4e-05  Score=49.77  Aligned_cols=69  Identities=19%  Similarity=0.395  Sum_probs=48.1

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec------cc------cccccCcEE------eceeEEEEeeeec
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI------TE------ATELSGRLT------QSKDSITIRKTTV  175 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~------~~------~~~~~~~~~------~~~~~l~i~~~~~  175 (323)
                      ..++.+|+++.|.|.+.|..-. ...+.|+|.  |+.+      ..      .+..++|+.      .....|.+.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~-~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~   87 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLT-GYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT   87 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTT-SSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEcccccC-CCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee
Confidence            3457789999999999986533 457889873  3221      10      223345554      2345699999999


Q ss_pred             CCCeeEEEEE
Q psy15235        176 DDAGQYSCRL  185 (323)
Q Consensus       176 ~d~G~y~C~~  185 (323)
                      +|++.|.|..
T Consensus        88 eDTAvYYCAr   97 (116)
T d1a2yb_          88 DDTARYYCAR   97 (116)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccceEEEEEE
Confidence            9999999976

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.88  E-value=3e-05  Score=50.80  Aligned_cols=71  Identities=14%  Similarity=0.351  Sum_probs=49.5

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      +...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+..++|+.      .....|.+.+
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~-~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~   86 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFT-SYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS   86 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGG-GSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCcEECCCCCEEEEEEEcCCCcc-CCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccc
Confidence            455678899999999999886522 35788988  23211      11       233456664      2345688999


Q ss_pred             eecCCCeeEEEEE
Q psy15235        173 TTVDDAGQYSCRL  185 (323)
Q Consensus       173 ~~~~d~G~y~C~~  185 (323)
                      ++.+|++.|.|..
T Consensus        87 L~~eDtA~YYCAr   99 (122)
T d1vgeh1          87 LRPEDTAVYYCAR   99 (122)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999977

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.88  E-value=5.1e-05  Score=49.89  Aligned_cols=72  Identities=24%  Similarity=0.332  Sum_probs=49.5

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee------c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..  ...+.|++.  |+.+.      .          -.+|++++.  ++......|.|+++
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSr--D~s~~t~~Lqm~sL   86 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSR--DDLEDFVYLQMHKM   86 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEec--cCccceEeeeeecc
Confidence            45678899999999998863  335888872  22211      1          124566663  22234677999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|...|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (125)
T d1op3h1          87 RVEDTAIYYCARKG  100 (125)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCccceeEeEeecc
Confidence            99999999997654

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.88  E-value=3.7e-05  Score=50.54  Aligned_cols=73  Identities=21%  Similarity=0.385  Sum_probs=48.2

Q ss_pred             ceeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee------cc----------CCeeeeecCCCCCCcceeEEEee
Q psy15235        213 ETLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF------RS----------QGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ....+++|++++|.|.+.|..  ...+.|++.  |+.+.      ..          .+|++++.  +.......|.|.+
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~--D~s~~t~~L~i~~   85 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITA--DTSSNTAYLQLTS   85 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEE--EGGGTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEe--ecCCceeeecccc
Confidence            345678899999999998763  235889872  32211      01          13455542  1112345699999


Q ss_pred             cCcCCCeEEEEEEee
Q psy15235        273 ATMADRGNYYCHGNN  287 (323)
Q Consensus       273 v~~~d~G~y~C~a~n  287 (323)
                      ++.+|++.|.|....
T Consensus        86 L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          86 LTSEDTAVYYCAPFG  100 (121)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             cCcCcceEEEeEeec
Confidence            999999999997654

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.88  E-value=3.4e-05  Score=50.55  Aligned_cols=73  Identities=18%  Similarity=0.329  Sum_probs=50.0

Q ss_pred             ceeEEeeCCeEEEEEEEecCCC--CcEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEee
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPP--PTVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ....+++|+++.|+|.+.|..-  -.+.|.+  .|+.+.      .          -.+|++++.  +.......|.+++
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~--D~s~~t~~L~~~s   85 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTA--DKSSSTAYMQLSS   85 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEE--ETTTTEEEEEEES
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEc--cCCcceEEecccc
Confidence            3456788999999999988743  3588887  222211      1          134666663  2333467799999


Q ss_pred             cCcCCCeEEEEEEee
Q psy15235        273 ATMADRGNYYCHGNN  287 (323)
Q Consensus       273 v~~~d~G~y~C~a~n  287 (323)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDTAvYYCAR~~  100 (124)
T d1yedb1          86 LKSEDSAVYFCTRWG  100 (124)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             cCCCcceEEEecccC
Confidence            999999999997544

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.87  E-value=0.00013  Score=48.30  Aligned_cols=70  Identities=16%  Similarity=0.360  Sum_probs=48.6

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+.+++|+.      .....|.|.++
T Consensus         8 G~~lvkPG~Sl~LsC~~SG~s~~-~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L   86 (135)
T d1ieha_           8 GGGLVQPGGSLRVSCAASGFTFS-SYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSL   86 (135)
T ss_dssp             CCCEECTTCEEEEEEEEESSCTT-TSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESC
T ss_pred             CCceECCCCCeEEEEEEcCCCCc-CCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeee
Confidence            34567789999999999986432 45688987  33221      11       233455665      23457899999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (135)
T d1ieha_          87 KSEDTAVYYCAK   98 (135)
T ss_dssp             CSSSCEEEEEEE
T ss_pred             CcccceeeEEEE
Confidence            999999999976

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.87  E-value=3.1e-05  Score=50.56  Aligned_cols=72  Identities=21%  Similarity=0.354  Sum_probs=49.0

Q ss_pred             ceeEEeeCCeEEEEEEEecCCCC--cEEEEE--CCeeee------------------ccCCeeeeecCCCCCCcceeEEE
Q psy15235        213 ETLTVIEGEKLRLECLVVGSPPP--TVEWRI--GNDTYF------------------RSQGRIKLSEHPEKGTANSVLQI  270 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~L~i  270 (323)
                      ....+++|+++.|+|.+.|..-.  .+.|++  .|+.++                  .-.+|++++  .+.......|.+
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiS--rD~s~nt~yL~~   85 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTIS--RDDSRNSIYLQM   85 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCE--ECTTTSEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEc--cccccceeecee
Confidence            34567889999999999987433  478887  332221                  012345555  222334567999


Q ss_pred             eecCcCCCeEEEEEEe
Q psy15235        271 DEATMADRGNYYCHGN  286 (323)
Q Consensus       271 ~~v~~~d~G~y~C~a~  286 (323)
                      .+++.+|++.|.|...
T Consensus        86 ~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          86 NRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             ESCCGGGCEECEEEEE
T ss_pred             cccCCCcceEEEEecc
Confidence            9999999999999754

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.87  E-value=5.8e-05  Score=49.32  Aligned_cols=69  Identities=16%  Similarity=0.317  Sum_probs=48.0

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec------cc-------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI------TE-------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ..++.+|+++.|.|.+.|..-. ...+.|+|.  |+.+      ..       .+..++|+.      .....|.+.+++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s-~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~   87 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYT-YIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLK   87 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSC-CSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCCcc-cCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecc
Confidence            4567889999999999886432 467889872  3211      11       223345664      234568899999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (121)
T d2p49b1          88 PEDTATYYCAA   98 (121)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccceeEEeeec
Confidence            99999999977

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.7e-05  Score=51.88  Aligned_cols=73  Identities=15%  Similarity=0.310  Sum_probs=47.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec--c-c------cccccC-cE-----EeceeEEEEeeeec
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI--T-E------ATELSG-RL-----TQSKDSITIRKTTV  175 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~--~-~------~~~~~~-~~-----~~~~~~l~i~~~~~  175 (323)
                      .|....+..|+.++|.|............+.|||.  +...  . .      ...... ++     ......|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            45666788899999999975433111246899983  2211  0 0      000111 11     14567899999999


Q ss_pred             CCCeeEEEEE
Q psy15235        176 DDAGQYSCRL  185 (323)
Q Consensus       176 ~d~G~y~C~~  185 (323)
                      +|+|.|.|.+
T Consensus        85 ~Dsa~YyCa~   94 (118)
T d1i8lc_          85 MDTGLYICKV   94 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCCEEEEEeE
Confidence            9999999988

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.87  E-value=4.7e-05  Score=49.59  Aligned_cols=72  Identities=17%  Similarity=0.284  Sum_probs=49.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      +....++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+.+.+|+.      .....|.|.
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~-~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~   84 (118)
T d1ct8b1           6 ESGAVLVKPGASVKLSCKTSGFTFS-SSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFS   84 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCST-TCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEccccCC-CCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEeccc
Confidence            3445678889999999999885533 45788987  33321      11       223344554      344678899


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (118)
T d1ct8b1          85 SLTTEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999976

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3e-05  Score=51.72  Aligned_cols=79  Identities=10%  Similarity=0.061  Sum_probs=47.6

Q ss_pred             eeceeEEeeCCeEEEEEEEecCCCC---cEEEEECC--eee--e----ccCCeeeeecC----CCCCCcceeEEEeecCc
Q psy15235        211 LVETLTVIEGEKLRLECLVVGSPPP---TVEWRIGN--DTY--F----RSQGRIKLSEH----PEKGTANSVLQIDEATM  275 (323)
Q Consensus       211 ~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~~~--~~~--~----~~~~~~~~~~~----~~~~~~~~~L~i~~v~~  275 (323)
                      .|....+.+|++++|.|.......+   .+.|++..  +..  .    ...........    .........|+|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            3444567789999999998533222   48899832  211  0    01110000000    11112467899999999


Q ss_pred             CCCeEEEEEEeecc
Q psy15235        276 ADRGNYYCHGNNVA  289 (323)
Q Consensus       276 ~d~G~y~C~a~n~~  289 (323)
                      +|+|.|.|.+....
T Consensus        85 ~Dsa~YyCa~~~~~   98 (118)
T d1i8lc_          85 MDTGLYICKVELMY   98 (118)
T ss_dssp             GGCEEEEEEEEEEE
T ss_pred             CCCEEEEEeEeccc
Confidence            99999999887654

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.85  E-value=0.00011  Score=48.22  Aligned_cols=73  Identities=10%  Similarity=0.157  Sum_probs=47.0

Q ss_pred             EeeceEEecCCcEEEEEEec--cCceEEEEEc--Cccceee--c----------cCcceEEEeeeeCCeEEEEEeecccC
Q psy15235         27 YFGDTEIMEGAPINISCILT--IFEQVKWQLN--GRNINQS--S----------VDSGFAATANLTEDNFKYSIHEAILE   90 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~--~~~~v~W~~~--g~~~~~~--~----------~~~~~~~~~~~~~~~~~l~i~~~~~~   90 (323)
                      .|..+.+.+|++|+|.|...  ....+.|||.  |+.+..-  .          ...............+.|.+.++.|+
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~ds   86 (112)
T d1fo0b_           7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (112)
T ss_dssp             ECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSC
T ss_pred             CCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCC
Confidence            35667789999999999843  3457999994  3322111  0          11122222223456788999999999


Q ss_pred             cceEEEeec
Q psy15235         91 SGYVQSSLF   99 (323)
Q Consensus        91 G~Y~C~~~~   99 (323)
                      +.|.|....
T Consensus        87 a~Y~Ca~~~   95 (112)
T d1fo0b_          87 RTLYCTCSA   95 (112)
T ss_dssp             EEEEEEEES
T ss_pred             ccEEEEEec
Confidence            999998743

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.85  E-value=4.9e-05  Score=50.08  Aligned_cols=72  Identities=17%  Similarity=0.347  Sum_probs=50.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+..++|+.      .....|.+.
T Consensus         5 esG~~~~kPg~sl~LsC~~SG~~~~-~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~   83 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKTTGYIFS-NYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLS   83 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTT-TEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCeEEEEEEccCCCC-CCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeec
Confidence            3445678889999999999986432 46788987  33221      11       233456654      345678999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        84 ~L~~eDTAvYYCAr   97 (126)
T d1lmka1          84 SLTSEDSAVYYCAR   97 (126)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999965

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.85  E-value=3.3e-05  Score=50.43  Aligned_cols=72  Identities=17%  Similarity=0.338  Sum_probs=49.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      +....++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+..++|+.      .+...|.|.
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~-~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~   84 (119)
T d1eapb1           6 ESGTELVKPGASVKISCKASGYIST-DHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLN   84 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEccCccc-CCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeee
Confidence            3444567889999999999886422 35788987  23221      11       223345654      234578999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (119)
T d1eapb1          85 SLTSEDSAVYFCKR   98 (119)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             cccCCcceEEEEEE
Confidence            99999999999965

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.85  E-value=3.7e-05  Score=50.39  Aligned_cols=73  Identities=23%  Similarity=0.398  Sum_probs=49.9

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee-------c-----------cCCeeeeecCCCCCCcceeEEEe
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF-------R-----------SQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~-------~-----------~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++.  |+.+.       .           -.+|+.++.  +.......|.+.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSr--D~s~nt~~L~~~   86 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISR--DNSQSILYLQMN   86 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEE--ETTTTEEEEEEC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeee--ecccceecccee
Confidence            456788999999999988643  35889862  32211       0           124566653  222245679999


Q ss_pred             ecCcCCCeEEEEEEeec
Q psy15235        272 EATMADRGNYYCHGNNV  288 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~n~  288 (323)
                      +++.+|.+.|.|.....
T Consensus        87 sL~~eDTAvYYCar~~~  103 (122)
T d1q9rb1          87 TLRAEDSATYYCARDHD  103 (122)
T ss_dssp             SCCGGGCEEEEEEECCC
T ss_pred             eeccCcceEEEEEecCC
Confidence            99999999999987544

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.85  E-value=3.3e-05  Score=49.21  Aligned_cols=63  Identities=17%  Similarity=0.342  Sum_probs=40.4

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .++.++|.|.+.++.|. ...|+|++++..+..... .....      .....|.+   ..++...|+|.+ .+.
T Consensus        15 ~~~~vtL~C~a~gF~P~-~i~v~W~~~~~~~~~~~~-~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V-~H~   83 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPK-PVWVMWMRGEQEQQGTQL-GDILPNANWTWYLRATLDV---ADGEAAGLSCRV-KHS   83 (96)
T ss_dssp             STTEEEEEEEEEEEBSS-CEEEEEEETTEECTTCEE-CCCEECTTSCEEEEEEEEE---EGGGCTTEEEEE-EEG
T ss_pred             CCCeEEEEEEEEEEECC-CcEEEEEECcccCCCcee-CccEeCCCCcEEEEEEEEE---eCccCCEEEEEE-EeC
Confidence            35689999999998775 579999999887644111 11111      11223333   345566899999 554

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.84  E-value=0.0001  Score=48.51  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=45.2

Q ss_pred             EeeceEEecCCcEEEEEEe-ccCceEEEEE--cCccceee-----------ccCcceEEEeeeeCCeEEEEEeeccc--C
Q psy15235         27 YFGDTEIMEGAPINISCIL-TIFEQVKWQL--NGRNINQS-----------SVDSGFAATANLTEDNFKYSIHEAIL--E   90 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~-~~~~~v~W~~--~g~~~~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~--~   90 (323)
                      .|..+.+.+|++|+|.|.. .....+.|||  .|+....-           ................+.|.|.++..  +
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (113)
T d2ntsp1           5 TPRYLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS   84 (113)
T ss_dssp             ECSEEEEETTCCEEEEEECSTTCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence            3566789999999999993 3456799999  33322110           01111112223334566777777654  9


Q ss_pred             cceEEEeec
Q psy15235         91 SGYVQSSLF   99 (323)
Q Consensus        91 G~Y~C~~~~   99 (323)
                      |.|+|.+..
T Consensus        85 a~YyCA~~~   93 (113)
T d2ntsp1          85 ALYLCASSL   93 (113)
T ss_dssp             EEEEEEEES
T ss_pred             eeeeeeeeC
Confidence            999998754

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.84  E-value=7.9e-05  Score=49.50  Aligned_cols=74  Identities=20%  Similarity=0.426  Sum_probs=50.4

Q ss_pred             eeEEeeCCeEEEEEEEecCCCC--cEEEEE--CCeeee----------------ccCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPPP--TVEWRI--GNDTYF----------------RSQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~~--~~~W~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-.  .+.|++  .|+.+.                .-.+|++++.  ++......|.+.++
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~--D~s~~t~~L~~~~L   85 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISA--DESTRTVYLHLRGL   85 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEe--ccCcceeEEeeccC
Confidence            4567889999999999886433  488877  222211                0124666663  23334677999999


Q ss_pred             CcCCCeEEEEEEeecc
Q psy15235        274 TMADRGNYYCHGNNVA  289 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~~  289 (323)
                      +.+|++.|.|......
T Consensus        86 ~~eDtA~YYCAr~~~~  101 (133)
T d1rzfh1          86 RSDDTAVYYCASNSIA  101 (133)
T ss_dssp             CGGGCEEEEEEEEECC
T ss_pred             CCCCCEEEEeeeccCC
Confidence            9999999999665443

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.83  E-value=5.9e-05  Score=50.44  Aligned_cols=72  Identities=18%  Similarity=0.331  Sum_probs=48.2

Q ss_pred             eeEEeeCCeEEEEEEEecCCC----CcEEEEEC--Ceeee---------------ccCCeeeeecCCCCCCcceeEEEee
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP----PTVEWRIG--NDTYF---------------RSQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~----~~~~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ...+++|++++|+|.+.|...    ..+.|++.  |+.+.               .-.+|++++.  ++......|+|.+
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~--d~s~~~~~L~i~~   86 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITK--DTSKNQVVLVMTR   86 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEE--ETTTTEEEEEECS
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecc--cccccEEEccccc
Confidence            356788999999999987532    24889872  22211               0124555552  2222356799999


Q ss_pred             cCcCCCeEEEEEEee
Q psy15235        273 ATMADRGNYYCHGNN  287 (323)
Q Consensus       273 v~~~d~G~y~C~a~n  287 (323)
                      ++.+|++.|.|....
T Consensus        87 l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          87 VSPVDTATYFCAHRR  101 (132)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCcccceEEEEEEec
Confidence            999999999997653

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.83  E-value=5e-05  Score=50.10  Aligned_cols=72  Identities=18%  Similarity=0.394  Sum_probs=49.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|+++.|.|.+.+..-. ...+.|+|  .|+-+      ..       .+..++|+.      .....|.+.
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~-~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~   84 (127)
T d2fx7h1           6 QSGAEVKRPGSSVTVSCKASGGSFS-TYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELN   84 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCST-TSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCC-CCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeec
Confidence            3445667889999999999886422 35689987  33221      11       233456655      234678999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTavYYCAR   98 (127)
T d2fx7h1          85 SLRPEDTAVYYCAR   98 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCcccceEEEEee
Confidence            99999999999976

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.83  E-value=3e-05  Score=49.69  Aligned_cols=70  Identities=20%  Similarity=0.330  Sum_probs=48.2

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc---------cccccCcEE------eceeEEEEe
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE---------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~---------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ...++.+|+++.|.|.+.|..-. ..-+.|+|  .|+.+      ..         .+..++|+.      .....|.|.
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~-~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~   86 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFN-TDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMN   86 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CCCeECCCCCeEEEEEECCCccc-ccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEeccc
Confidence            34567889999999999885522 34788987  33211      11         123345665      234568999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        87 sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          87 NLKTEDTGIYYCVR  100 (109)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             CCCHhHCEEEEEEE
Confidence            99999999999976

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=0.00016  Score=45.77  Aligned_cols=62  Identities=6%  Similarity=0.225  Sum_probs=40.0

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeecccccc------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .++.++|.|.+.|..|  .+.|.|+++|..+.....      .++.+ .....|.+.   ..+...|+|.+ .+.
T Consensus        15 s~~~~~L~C~~~g~~P--~~~V~W~~n~~~~~~~~~~~~~~~~~g~y-~v~S~L~v~---~~~~~~~tC~V-~h~   82 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFP--EPHLSWLENGEELNAINTTVSQDPETELY-AVSSKLDFN---MTTNHSFMCLI-KYG   82 (95)
T ss_dssp             STTEEEEEEEEEEESS--CEEEEEEESSCEECCSEEEEEECTTTCCE-EEEEEEEEE---TTSCEEEEEEE-EET
T ss_pred             CCCEEEEEEEECcccC--CCEEEEecCCcEecccceeeEecCCCccE-EEEEEEEcc---CCccceEEEEE-Eec
Confidence            5778999999998655  679999999987754100      01111 222334443   44567999999 555

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=4.1e-05  Score=48.87  Aligned_cols=64  Identities=17%  Similarity=0.360  Sum_probs=40.4

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEeeeecCCCe
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRKTTVDDAG  179 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~~~~d~G  179 (323)
                      +|++++|.|.+.|..-. ...+.|+|  .|+.+      ..       .+..++|+.      .....|++.+++.+|++
T Consensus         1 PG~sl~LsC~~SG~s~~-~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTA   79 (103)
T d1oari_           1 PGASVKLSCKASGYTFT-SYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSA   79 (103)
T ss_dssp             CCCCEEEEEECCSSCST-TSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCS
T ss_pred             CCCCeEEEEEEECCChh-cCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccE
Confidence            48999999999886422 35789987  33321      11       234456665      33457899999999999


Q ss_pred             eEEEEE
Q psy15235        180 QYSCRL  185 (323)
Q Consensus       180 ~y~C~~  185 (323)
                      .|.|..
T Consensus        80 vYYCAr   85 (103)
T d1oari_          80 VYYCAR   85 (103)
T ss_dssp             EEEEEE
T ss_pred             EEEeEE
Confidence            999976

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.83  E-value=1.9e-05  Score=51.63  Aligned_cols=73  Identities=11%  Similarity=0.107  Sum_probs=43.3

Q ss_pred             EeeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        217 VIEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       217 ~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ...+..++|.|.+.|+ |.. .++|.+||..+...................+.|++..-..  ...|+|.+.+....
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNK   95 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSG
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCC
Confidence            4456789999999775 544 6999999987643211111110011112345566654433  23699999998644

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.83  E-value=3.5e-05  Score=50.78  Aligned_cols=72  Identities=14%  Similarity=0.326  Sum_probs=50.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|+++.|.|.+.|+.-. ...+.|+|  .|+.+      ..       .+.+++|+.      .+...|.+.
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~-~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~   84 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFS-NFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR   84 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCC-CCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEE
Confidence            4455678899999999999986522 34788987  33221      11       233455655      234568899


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          85 SLRSADTAVYYCAR   98 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEEe
Confidence            99999999999965

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.83  E-value=3.8e-05  Score=50.14  Aligned_cols=72  Identities=17%  Similarity=0.391  Sum_probs=49.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      +....++.+|+++.|.|.+.|..-. ...+.|+|.  |+.+      ..       .+..++|+.      .+...|.+.
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~-~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~   84 (119)
T d1rz7h1           6 QSGAEVKKPGATVKISCKASGYTFS-DFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELS   84 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCc-CCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeee
Confidence            3444567889999999999986522 347889872  3211      11       233455665      334568999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (119)
T d1rz7h1          85 SLRSEDTAVYYCAA   98 (119)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCcccceEEEEee
Confidence            99999999999976

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.83  E-value=4.5e-05  Score=50.25  Aligned_cols=69  Identities=14%  Similarity=0.344  Sum_probs=48.6

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec------cc-------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI------TE-------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ..++.+|+++.|.|.+.|.... ...+.|+|.  |+.+      ..       .+..++|+.      .....|.+.+++
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~-~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~   86 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDS-IEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK   86 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTT-CCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCcccc-cccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence            3457789999999999986533 457899882  3211      11       233456665      334668899999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        87 ~eDtAvYYCAr   97 (124)
T d1zvya1          87 SEDTAIYTCGA   97 (124)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999987

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.83  E-value=4.5e-05  Score=49.73  Aligned_cols=71  Identities=17%  Similarity=0.351  Sum_probs=48.4

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc------c------cccccCcEE------eceeEEEEeeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT------E------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~------~------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ...++.+|+++.|.|.+.|..-.....+.|+|  .|+.+.      .      .+..++|+.      .+...|.+.+++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~   87 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT   87 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc
Confidence            34567789999999999986521024578987  343221      1      234455665      234568999999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (119)
T d1ncwh1          88 TEDTATYYCAG   98 (119)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCCceEEEEeE
Confidence            99999999976

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.83  E-value=5e-05  Score=49.56  Aligned_cols=70  Identities=19%  Similarity=0.349  Sum_probs=48.4

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc------c---------cccccCcEE------eceeEEEEe
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT------E---------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~------~---------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+.      .         .+..++|+.      .+...|.|.
T Consensus         8 G~~~vkpG~sl~LsC~~SG~s~~-~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~   86 (120)
T d1dlfh_           8 GGGLVQPGGSMKLSCATSGFTFS-DAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMN   86 (120)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTT-TCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             CCceECCCCCeEEEEEECCccCc-CCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceecccee
Confidence            34557889999999999886432 46889987  333211      1         123345654      233578999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        87 ~L~~eDtAvYYCA~  100 (120)
T d1dlfh_          87 TLRAEDTGIYYCTG  100 (120)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             eccCCCceEEEeeE
Confidence            99999999999976

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.82  E-value=6.3e-05  Score=49.73  Aligned_cols=73  Identities=25%  Similarity=0.388  Sum_probs=49.6

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CCcEEEEEC--Ceeee------c----------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PPTVEWRIG--NDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|++++|.|.+.|..  ...+.|++.  |+.+.      .          -.+|++++.  +.......|.|+++
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~--D~s~~t~yL~~~~L   86 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISR--NDSKNTLFLQMDSL   86 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEec--cCCccEEEeeeeee
Confidence            45577899999999998863  235888772  22211      1          124566663  22334677999999


Q ss_pred             CcCCCeEEEEEEeec
Q psy15235        274 TMADRGNYYCHGNNV  288 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~  288 (323)
                      +.+|++.|.|.....
T Consensus        87 ~~eDTA~YYCAr~~~  101 (127)
T d2fb4h1          87 RPEDTGVYFCARDGG  101 (127)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             eecceeEEEEEEecC
Confidence            999999999975543

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.82  E-value=4.8e-05  Score=50.14  Aligned_cols=74  Identities=18%  Similarity=0.249  Sum_probs=47.5

Q ss_pred             eceeEEeeCCeEEEEEEEecCCCCcEEEEECC--eeee-----c---------cCCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        212 VETLTVIEGEKLRLECLVVGSPPPTVEWRIGN--DTYF-----R---------SQGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       212 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~~~-----~---------~~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      |....+.+|++++|.|..... ...+.||+..  ..+.     .         ...+....  . .......|+|.+++.
T Consensus         5 P~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           5 PRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVS--R-IRTEHFPLTLESARP   80 (112)
T ss_dssp             CSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEEC--C-SSSSBCCEEBSSCCT
T ss_pred             CCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceee--c-CCCCceEeeeccccc
Confidence            445677899999999997432 3569999832  1110     0         00111111  1 112457799999999


Q ss_pred             CCCeEEEEEEeecc
Q psy15235        276 ADRGNYYCHGNNVA  289 (323)
Q Consensus       276 ~d~G~y~C~a~n~~  289 (323)
                      +|+|.|.|.+....
T Consensus        81 ~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          81 SHTSQYLCASSENI   94 (112)
T ss_dssp             TTCSEEEEEEECSS
T ss_pred             cccccEEEEEecCC
Confidence            99999999887654

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.81  E-value=5.8e-05  Score=47.88  Aligned_cols=68  Identities=15%  Similarity=0.214  Sum_probs=40.8

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCC--cceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGT--ANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+..++|.|.+.|+ |.. .++|.+||..+..............++.  ..+.|.+.   .++...|+|.+.+..
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEECC
Confidence            35678999999886 544 7999999988753322211111011111  23334443   444457999999976

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.81  E-value=3.1e-05  Score=51.35  Aligned_cols=73  Identities=15%  Similarity=0.379  Sum_probs=49.2

Q ss_pred             ceeEEeeCCeEEEEEEEecCC--CCcEEEEE--CCeeee------c----------cCCeeeeecCCCCCCcceeEEEee
Q psy15235        213 ETLTVIEGEKLRLECLVVGSP--PPTVEWRI--GNDTYF------R----------SQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       213 ~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ....+++|+++.|+|.+.|..  ...+.|++  .|+.+.      .          -.+|++++.  ++......|.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~--D~s~~t~yL~~~s   85 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITA--DESTSTAYMELSS   85 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEE--ETTTTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEec--ccccceEEeeeee
Confidence            345678899999999998863  33588887  222211      1          124556653  2222456699999


Q ss_pred             cCcCCCeEEEEEEee
Q psy15235        273 ATMADRGNYYCHGNN  287 (323)
Q Consensus       273 v~~~d~G~y~C~a~n  287 (323)
                      ++.+|++.|.|....
T Consensus        86 L~~eDtA~YYCAr~~  100 (130)
T d1rzga1          86 LRSEDTAVFYCASPY  100 (130)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             cCCCccEEEEEEEec
Confidence            999999999998543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.4e-05  Score=46.48  Aligned_cols=77  Identities=17%  Similarity=0.402  Sum_probs=50.9

Q ss_pred             eeCCeEEEEEEEecCCCCcEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCc-CCCeEEEEEEeecccCCCCCc
Q psy15235        218 IEGEKLRLECLVVGSPPPTVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATM-ADRGNYYCHGNNVATRNSQPN  296 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~y~C~a~n~~g~~~~~~  296 (323)
                      ..|.+|+|+|.-  .....+.|.+++..+......-.+.      .....|.+.+..+ +++|.|.|.+.....   ...
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~------~~~~~l~L~dfSe~e~sGyY~C~~~~~~~---~~~   76 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIG------SDEDHLSLKEFSELEQSGYYVCYPRGSKP---EDA   76 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEE------EETTEEEETTCCHHHHCEEEEEEETTSCG---GGC
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCcccccc------cccceEEecccCccccCceEEEEcCCCCC---CCc
Confidence            359999999964  3456799999998876543211111      1356788888776 799999999865431   124


Q ss_pred             eeEEEEEEc
Q psy15235        297 EAFVYVRVK  305 (323)
Q Consensus       297 ~~~~~l~v~  305 (323)
                      ...++|.+.
T Consensus        77 ~~~LYLKAR   85 (91)
T d1xiwa_          77 NFYLYLRAR   85 (91)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEEeE
Confidence            445666654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.80  E-value=4e-05  Score=50.69  Aligned_cols=72  Identities=13%  Similarity=0.313  Sum_probs=49.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------c-c------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------T-E------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~-~------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|++++|.|.+.|..-. ...+.|+|  .|+.+      . .      .+...+|+.      .+...|.|.
T Consensus         6 esg~~l~kPg~sl~LsC~~SG~~~~-~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~   84 (125)
T d1rihh1           6 QSGNELAKPGASMKMSCRASGYSFT-SYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN   84 (125)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEccCCCC-CCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence            4455678899999999999886522 34788987  33211      1 0      233445554      234568899


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDtAvYYCAR   98 (125)
T d1rihh1          85 SLTSEDSAVYYCAR   98 (125)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCcccceEEEEee
Confidence            99999999999976

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.80  E-value=4e-05  Score=49.50  Aligned_cols=70  Identities=16%  Similarity=0.288  Sum_probs=47.7

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCee------ccc-------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKS------ITE-------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~------~~~-------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.      +..       .+..++|+.      .+...|.|.++
T Consensus         8 G~~~vkpG~sl~LsC~~SG~~~s-~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L   86 (114)
T d1indh1           8 GGDSVKPGGSLKLSCAASGFTLS-GETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSL   86 (114)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEECccCcc-CCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeee
Confidence            34567789999999999886422 45788987  2321      111       123345655      23456999999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCA~   98 (114)
T d1indh1          87 RSEDTALYFCAS   98 (114)
T ss_dssp             CGGGCEEEEEEC
T ss_pred             ccCcccEEEECC
Confidence            999999999965

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.80  E-value=5.2e-05  Score=49.92  Aligned_cols=70  Identities=10%  Similarity=0.311  Sum_probs=47.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceeccc------------cccccCcEE---eceeEEEEeeeec
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSITE------------ATELSGRLT---QSKDSITIRKTTV  175 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~~~------------~~~~~~~~~---~~~~~l~i~~~~~  175 (323)
                      .|...++.+|++++|.|......   ...+.|||.  |+.+..            ......++.   .....|.|...+.
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~---~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~   83 (112)
T d1fo0b_           7 NPRWRLVPRGQAVNLRCILKNSQ---YPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANM   83 (112)
T ss_dssp             ECSEEECCTTCCEEEEEEESCTT---CCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESC
T ss_pred             CCCeEEECCCCCEEEEEEEecCC---CCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCc
Confidence            56677788999999999887655   457999983  322110            000122332   2335688888999


Q ss_pred             CCCeeEEEEE
Q psy15235        176 DDAGQYSCRL  185 (323)
Q Consensus       176 ~d~G~y~C~~  185 (323)
                      +|++.|.|.+
T Consensus        84 ~dsa~Y~Ca~   93 (112)
T d1fo0b_          84 SQGRTLYCTC   93 (112)
T ss_dssp             CSCEEEEEEE
T ss_pred             cCCccEEEEE
Confidence            9999999987

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.80  E-value=2.8e-06  Score=55.44  Aligned_cols=70  Identities=21%  Similarity=0.288  Sum_probs=46.6

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .++.+.|.|.+.|. |.. .|.|++||..+..........  ..++  ...+.|.|..-..++...|+|.|.+...
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~--~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPS--KQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCB--CSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEecccc--CCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            36778999999875 543 799999999876332211111  1111  2356677776666667789999999763

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.80  E-value=3.7e-05  Score=50.86  Aligned_cols=73  Identities=25%  Similarity=0.447  Sum_probs=47.8

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceee------ecc----------CCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTY------FRS----------QGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~------~~~----------~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++.  |+.+      ...          .+|++++.  +.......|.|+++
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~--D~s~~~~~L~i~~l   85 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISL--DNAKNTLYLQMNSL   85 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEE--EC--CEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEe--cCCceEEEEEEecc
Confidence            356788999999999988633  35899872  2221      111          13555553  22224566999999


Q ss_pred             CcCCCeEEEEEEeec
Q psy15235        274 TMADRGNYYCHGNNV  288 (323)
Q Consensus       274 ~~~d~G~y~C~a~n~  288 (323)
                      +.+|++.|.|.....
T Consensus        86 ~~eDTAvYYCAr~~~  100 (126)
T d1rjca1          86 KPEDTAMYYCAADTS  100 (126)
T ss_dssp             CGGGCEEEEEEECCT
T ss_pred             CcccCceeEEEeecc
Confidence            999999999976543

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.80  E-value=3.7e-05  Score=50.59  Aligned_cols=72  Identities=17%  Similarity=0.338  Sum_probs=49.5

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+.+++|+.      .+...|.+.
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~-~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~   84 (124)
T d2b1hh1           6 QSGAEVKKSGESLKISCQTSGYSFS-DYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWS   84 (124)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEES
T ss_pred             eECCceECCCCCEEEEEEEcCCCCc-CCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeee
Confidence            3445677899999999999986522 34688987  23211      11       233456654      234678999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          85 SLKPSDTALYYCAR   98 (124)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccccceEEEEee
Confidence            99999999999965

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.79  E-value=3.3e-05  Score=50.63  Aligned_cols=70  Identities=21%  Similarity=0.318  Sum_probs=47.0

Q ss_pred             eeEEecCCcEEEEEEeecCCCC-CCceEEEEE--CCeec------cc------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPG-DDYQIVWYK--GNKSI------TE------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~-~~~~i~W~~--~~~~~------~~------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ..++.+|++++|.|.+.|+.-. ....+.|+|  .|+.+      ..      .+..++|+.      .+...|.|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            3457789999999999885411 034678987  23222      11      122345654      233568999999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        89 ~eDtAvYYCAr   99 (120)
T d1ai1h1          89 NEDTAMYYCSR   99 (120)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccceeEEEEEe
Confidence            99999999975

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.79  E-value=4.1e-05  Score=49.85  Aligned_cols=70  Identities=14%  Similarity=0.304  Sum_probs=48.2

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+..++|+.      .+...|.+.++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~s-~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL   86 (118)
T d2fbjh1           8 GGGLVQPGGSLKLSCAASGFDFS-KYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEECCcccc-CCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeecccccc
Confidence            34567889999999999986521 34688987  33211      11       233455654      23456899999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (118)
T d2fbjh1          87 RSEDTALYYCAR   98 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEeeE
Confidence            999999999976

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.79  E-value=5.6e-05  Score=49.26  Aligned_cols=72  Identities=17%  Similarity=0.344  Sum_probs=50.1

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      +....++.+|+++.|.|.+.+..-. ...+.|+|  .|+.+      ..       .+..++|+.      .+...|.+.
T Consensus         6 esg~~~vkpg~sl~LsC~vSG~s~~-~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~   84 (120)
T d1ad9b1           6 QSGAEVKKPGSSVKVSCKASGYTFT-DYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELS   84 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCc-CCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecccc
Confidence            3445668889999999999986532 34788987  23221      10       234456664      345678899


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDTAvYYCAr   98 (120)
T d1ad9b1          85 SLRSEDTAFYFCAR   98 (120)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEEE
Confidence            99999999999976

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.79  E-value=6.1e-05  Score=49.91  Aligned_cols=72  Identities=18%  Similarity=0.353  Sum_probs=49.8

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+..++|+.      .+...|.+.
T Consensus         5 esg~~~~kPg~sl~LsC~~SG~~~~-~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~   83 (130)
T d1rhhb1           5 QSGAEVKKPGSSVQVSCKASGGTFS-MYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELT   83 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEETTSCCT-TCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ccCCceECCCCCeEEEEEEeCCCcc-CCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEee
Confidence            3445668899999999999885422 45789987  33211      10       233345654      234568899


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        84 ~L~~eDtAvYyCAr   97 (130)
T d1rhhb1          84 NLRSDDTAVYYCAR   97 (130)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCcEEEEEEe
Confidence            99999999999977

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=1.3e-05  Score=51.77  Aligned_cols=69  Identities=22%  Similarity=0.260  Sum_probs=42.2

Q ss_pred             eCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeeccc
Q psy15235        219 EGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVAT  290 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g  290 (323)
                      .++.++|.|.+.|+ |.. .|.|.+++......... ... ........+.|+|..-... .|.|+|.+.+...
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~-~~~-~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~   89 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVS-AVL-QSGLYTLSSNTTVASGTWP-SASVTCLVAHPKS   89 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECC-CEE-ETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGG
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeee-eec-CCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCC
Confidence            47899999999874 543 79998777442110000 000 0111123577877766553 5789999999873

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=1.4e-05  Score=51.81  Aligned_cols=69  Identities=16%  Similarity=0.324  Sum_probs=44.3

Q ss_pred             CCeEEEEEEEecC-CC-CcEEEEECCeeeeccCCeeeeecCCCCC-CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        220 GEKLRLECLVVGS-PP-PTVEWRIGNDTYFRSQGRIKLSEHPEKG-TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       220 g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      ...+.|.|.+.|. |. ..++|.+||............. ..++. ...+.|.|..........|+|.|.+..
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~-~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTM-DTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEE-CTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEe-CCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            5678999999776 44 4799999998653211100011 11111 245668888766666668999999965

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.79  E-value=4.4e-05  Score=50.70  Aligned_cols=74  Identities=22%  Similarity=0.415  Sum_probs=49.2

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEEC--Ceeee---------------------ccCCeeeeecCCCCCCcceeE
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRIG--NDTYF---------------------RSQGRIKLSEHPEKGTANSVL  268 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~~---------------------~~~~~~~~~~~~~~~~~~~~L  268 (323)
                      ...+++|+++.|+|.+.|..-  -.+.|++.  |+.+.                     .-.+|++++.  +.......|
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~--d~s~~~~~L   86 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSR--DNAKNTVNL   86 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEE--EGGGTEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEec--cCCceEEEE
Confidence            345678999999999988643  35889873  21110                     0113555552  222245679


Q ss_pred             EEeecCcCCCeEEEEEEeecc
Q psy15235        269 QIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       269 ~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      +|.+++.+|++.|.|......
T Consensus        87 ~i~~l~~eDtAvYYCAr~~~~  107 (127)
T d1i3ua_          87 QMNSLKPEDTAVYYCAAKTTT  107 (127)
T ss_dssp             EECSCCGGGCEEEEEEEESCS
T ss_pred             eeecccccceeEEEEEEEeec
Confidence            999999999999999876433

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=1.8e-05  Score=51.16  Aligned_cols=71  Identities=24%  Similarity=0.348  Sum_probs=39.8

Q ss_pred             eeCCeEEEEEEEecC-CCC-cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecccC
Q psy15235        218 IEGEKLRLECLVVGS-PPP-TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVATR  291 (323)
Q Consensus       218 ~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~g~  291 (323)
                      ..++.++|.|.+.|+ |.. .|+|..++.............  .......+.|+|..-... .+.|+|.+.+..+.
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~--~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~   90 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQ--SDLYTLSSSVTVTSSTWP-SQSITCNVAHPASS   90 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEE--TTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGT
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccC--CCCEEEEEEEEEehhHcC-CceEEEEEEECCCC
Confidence            356789999999875 544 799976653311000000000  111123467777766653 56899999998743

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.77  E-value=3.1e-05  Score=50.52  Aligned_cols=66  Identities=11%  Similarity=0.152  Sum_probs=41.4

Q ss_pred             EecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCC-CeeEEEEEEcCC
Q psy15235        119 FEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDD-AGQYSCRLIDPK  189 (323)
Q Consensus       119 ~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d-~G~y~C~~~~~~  189 (323)
                      ...+..++|.|.+.++.|. ...|.|.+||..+...........     .....|.+..   ++ ...|+|.+ .+.
T Consensus        21 ~~~~~~~~l~Clv~~f~P~-~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~---~~w~~~ytC~V-~H~   92 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPD-VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPE---KSLDKEHRCIV-RHE   92 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSC-CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECT---GGGGSCEEEEE-EET
T ss_pred             HccCCcEEEEEEEeEEeCC-ceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEec---ccCCCeEEEEE-EEC
Confidence            4457889999999998776 579999999987654211111111     1223444433   33 23799999 555

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.77  E-value=0.0001  Score=48.95  Aligned_cols=72  Identities=18%  Similarity=0.344  Sum_probs=47.4

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CC--cEEEEE--CCeeee------c---------cCCeeeeecCCCCCCcceeEEEee
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PP--TVEWRI--GNDTYF------R---------SQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~--~~~W~~--~~~~~~------~---------~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ...+++|++++|+|.+.|..  ..  .+.|++  .++.+.      .         -.+|++++.  ++......|+|.+
T Consensus         9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~--d~s~~t~~L~i~~   86 (126)
T d1etzb1           9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSK--DTSSNQVFLKITS   86 (126)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEE--ETTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEec--ccCCcEEEcceec
Confidence            34677899999999998752  22  367876  222211      0         123555553  2222356799999


Q ss_pred             cCcCCCeEEEEEEee
Q psy15235        273 ATMADRGNYYCHGNN  287 (323)
Q Consensus       273 v~~~d~G~y~C~a~n  287 (323)
                      ++.+|++.|.|....
T Consensus        87 l~~eDtAvYyCAr~~  101 (126)
T d1etzb1          87 VDTSDTATYHCARRT  101 (126)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccccccceEEEEEec
Confidence            999999999998543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.76  E-value=8.3e-05  Score=48.93  Aligned_cols=71  Identities=21%  Similarity=0.380  Sum_probs=46.4

Q ss_pred             eeEEeeCCeEEEEEEEecCC--CC--cEEEEE--CCeeee------c---------cCCeeeeecCCCCCCcceeEEEee
Q psy15235        214 TLTVIEGEKLRLECLVVGSP--PP--TVEWRI--GNDTYF------R---------SQGRIKLSEHPEKGTANSVLQIDE  272 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p--~~--~~~W~~--~~~~~~------~---------~~~~~~~~~~~~~~~~~~~L~i~~  272 (323)
                      ...+++|++++|+|.+.|..  ..  .+.|++  .|+.+.      .         -.+|++++.  +.......|+|.+
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~--D~s~~~~~L~i~s   86 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSK--DTSNNQAFLNMMT   86 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEE--EGGGTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccc--cccceeEEcceee
Confidence            35577899999999998753  22  367986  232211      1         113455542  1222346699999


Q ss_pred             cCcCCCeEEEEEEe
Q psy15235        273 ATMADRGNYYCHGN  286 (323)
Q Consensus       273 v~~~d~G~y~C~a~  286 (323)
                      ++.+|+..|.|...
T Consensus        87 l~~eDsAvYyCAr~  100 (123)
T d1r0ah1          87 VETADTAIYYCAQS  100 (123)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEeeccc
Confidence            99999999999754

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.76  E-value=9.3e-05  Score=48.77  Aligned_cols=75  Identities=15%  Similarity=0.120  Sum_probs=44.8

Q ss_pred             EEE-eeceEEecCCcEEEEEEe-ccCceEEEEEc--Cccceee-----------ccCcceEEEeeeeCCeEEEEEeec--
Q psy15235         25 ITY-FGDTEIMEGAPINISCIL-TIFEQVKWQLN--GRNINQS-----------SVDSGFAATANLTEDNFKYSIHEA--   87 (323)
Q Consensus        25 i~~-~~~~~v~~G~~v~L~C~~-~~~~~v~W~~~--g~~~~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~--   87 (323)
                      |.+ |..+.+.+|++|+|.|.. .....+.|||.  |+.+..-           ................+.|.|.++  
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   82 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDMDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST   82 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG
T ss_pred             EEccCCEEEECCCCCEEEEEEEcCCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc
Confidence            444 556778999999999983 34467899992  3222110           001111222222344566777665  


Q ss_pred             ccCcceEEEeec
Q psy15235         88 ILESGYVQSSLF   99 (323)
Q Consensus        88 ~~~G~Y~C~~~~   99 (323)
                      .|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (113)
T d1j8he1          83 NQTSMYLCASSS   94 (113)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCcccEEeeEcc
Confidence            459999998864

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.76  E-value=6e-05  Score=49.43  Aligned_cols=69  Identities=17%  Similarity=0.379  Sum_probs=47.8

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ..++.+|+++.|.|.+.++.-. ...+.|+|  .|+.+      ..       .+..++|+.      .....|.|.+++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s-~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~   87 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFS-SYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLR   87 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCcCCc-CCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecc
Confidence            4567889999999999885421 34688987  23321      11       233455665      234579999999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (121)
T d1ol0a_          88 AEDTAVYYCAR   98 (121)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccceEEEEEE
Confidence            99999999976

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.76  E-value=5.9e-05  Score=49.46  Aligned_cols=70  Identities=17%  Similarity=0.362  Sum_probs=47.8

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCee------ccc-------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKS------ITE-------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~------~~~-------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.      |..       .+..++|+.      .....|.|.++
T Consensus         8 G~~lvkPG~sl~LsC~~SG~s~~-~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L   86 (123)
T d1mqkh_           8 GGDLVQPGGSLKLSCAASGFTFS-SYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSL   86 (123)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEECcccCc-CCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeee
Confidence            34567789999999999885421 34678987  3321      111       233455655      23456899999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (123)
T d1mqkh_          87 KSEDTAMYYCVR   98 (123)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcccceeEEe
Confidence            999999999976

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.76  E-value=6.8e-05  Score=49.38  Aligned_cols=70  Identities=19%  Similarity=0.393  Sum_probs=46.1

Q ss_pred             eeEEecCCcEEEEEEeecCCCCC-CceEEEEE--CCeecc------c------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGD-DYQIVWYK--GNKSIT------E------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~--~~~~~~------~------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ..++.+|++++|.|.+.|+.-.. ...+.|+|  .|+.+.      .      .+..++|+.      .....|+|.+++
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~   88 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE   88 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence            34577899999999988753110 23578987  332211      1      122345664      223569999999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        89 ~eDsAvYyCAr   99 (123)
T d1r0ah1          89 TADTAIYYCAQ   99 (123)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccceEEeecc
Confidence            99999999976

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.74  E-value=6.7e-05  Score=49.15  Aligned_cols=72  Identities=17%  Similarity=0.335  Sum_probs=50.0

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|+++.|.|.+.|..-. ...+.|+|  .|+-+      ..       .+..++|+.      .+...|.+.
T Consensus         6 esG~~~~kPG~sl~LsC~~SG~~~~-~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~   84 (124)
T d1yedb1           6 QSGPELVRPGTSVKLSCKTSGYIFT-SYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLS   84 (124)
T ss_dssp             ECCCEEECTTCEEEEEEEEESSCGG-GSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEE
T ss_pred             eeCCceECCCCCEEEEEEEcCCCcc-CCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEeccc
Confidence            3445667889999999999986422 34788987  33221      11       233456655      344678899


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAR   98 (124)
T d1yedb1          85 SLKSEDSAVYFCTR   98 (124)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEecc
Confidence            99999999999976

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.74  E-value=9.9e-05  Score=48.74  Aligned_cols=70  Identities=17%  Similarity=0.349  Sum_probs=47.3

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|+++.|.|.+.+..-. ...+.|+|  .|+.+      ..       .+..++|+.      .....|.|.++
T Consensus         7 G~~lvkPg~sl~LsC~~SG~~~s-~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l   85 (126)
T d1rjca1           7 GGGSVQAGQSLRLSCATSGATSS-SNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSL   85 (126)
T ss_dssp             CCEEECTTCCEEEEEECC-CTTT-CSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEECCCCCc-CCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEecc
Confidence            34567889999999999885432 45789988  23221      11       123345654      23355899999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|++.|.|..
T Consensus        86 ~~eDTAvYYCAr   97 (126)
T d1rjca1          86 KPEDTAMYYCAA   97 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CcccCceeEEEe
Confidence            999999999976

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.73  E-value=7.1e-05  Score=49.42  Aligned_cols=72  Identities=19%  Similarity=0.369  Sum_probs=48.7

Q ss_pred             eeEEeeCCeEEEEEEEecCCC---CcEEEEE--CCeeee------c---------cCCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP---PTVEWRI--GNDTYF------R---------SQGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~---~~~~W~~--~~~~~~------~---------~~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|..-   -.+.|+|  .|+.+.      .         -.+|++++.  +.......|.|.++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~--d~s~nt~yL~l~~l   86 (127)
T d3cx5j1           9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITR--DTSKNQFFLKLNSV   86 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEE--ETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeec--ccccceeecceecc
Confidence            345788999999999988643   2578987  333321      1         123444442  22234577999999


Q ss_pred             CcCCCeEEEEEEee
Q psy15235        274 TMADRGNYYCHGNN  287 (323)
Q Consensus       274 ~~~d~G~y~C~a~n  287 (323)
                      +.+|.+.|.|....
T Consensus        87 ~~eDtAvYyCAr~~  100 (127)
T d3cx5j1          87 TTEDTATYYCARSE  100 (127)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccceEEEeeeec
Confidence            99999999997543

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.73  E-value=2.2e-05  Score=50.99  Aligned_cols=71  Identities=24%  Similarity=0.420  Sum_probs=49.1

Q ss_pred             eeEEeeCCeEEEEEEEecC--CCCcEEEEEC--Ceee------e-cc---------CCeeeeecCCCCCCcceeEEEeec
Q psy15235        214 TLTVIEGEKLRLECLVVGS--PPPTVEWRIG--NDTY------F-RS---------QGRIKLSEHPEKGTANSVLQIDEA  273 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~--~~~~------~-~~---------~~~~~~~~~~~~~~~~~~L~i~~v  273 (323)
                      ...+++|+++.|+|.+.|+  ..-.+.|++.  |+.+      . ..         .+|++++  .+.......|.+.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tis--rD~s~~t~~L~~~sL   86 (117)
T d1b2wh1           9 GGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTIS--RDKSKNTLYLQMNSL   86 (117)
T ss_dssp             CCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEE--CCTTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEE--eccccceEEeeeccc
Confidence            4567889999999999875  3345788772  2211      1 11         2466676  333335678999999


Q ss_pred             CcCCCeEEEEEEe
Q psy15235        274 TMADRGNYYCHGN  286 (323)
Q Consensus       274 ~~~d~G~y~C~a~  286 (323)
                      +.+|.+.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1b2wh1          87 RPEDTAVYYCARG   99 (117)
T ss_dssp             CGGGCEEEECCEE
T ss_pred             cCCcceEEEEccc
Confidence            9999999999643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.73  E-value=5.2e-05  Score=50.33  Aligned_cols=70  Identities=19%  Similarity=0.449  Sum_probs=48.2

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEEC--Cee---c---cc------------cccccCcEE------eceeEE
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKS---I---TE------------ATELSGRLT------QSKDSI  168 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~---~---~~------------~~~~~~~~~------~~~~~l  168 (323)
                      ...++.+|+++.|.|.+.|..-. ...+.|+|.  |+.   +   ..            .+..++|+.      .....|
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~s-~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L   86 (127)
T d1i3ua_           8 GGGLVQAGDSLKLSCEASGDSIG-TYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNL   86 (127)
T ss_dssp             SCEECCTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCCC-CCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEE
Confidence            34567789999999999886422 457889973  221   1   00            122345654      334578


Q ss_pred             EEeeeecCCCeeEEEEE
Q psy15235        169 TIRKTTVDDAGQYSCRL  185 (323)
Q Consensus       169 ~i~~~~~~d~G~y~C~~  185 (323)
                      +|.+++.+|++.|.|..
T Consensus        87 ~i~~l~~eDtAvYYCAr  103 (127)
T d1i3ua_          87 QMNSLKPEDTAVYYCAA  103 (127)
T ss_dssp             EECSCCGGGCEEEEEEE
T ss_pred             eeecccccceeEEEEEE
Confidence            99999999999999987

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=2.2e-05  Score=51.46  Aligned_cols=67  Identities=15%  Similarity=0.349  Sum_probs=42.6

Q ss_pred             ecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccc-----------cCcEEeceeEEEEeeeecCCCeeEEEEEEcC
Q psy15235        120 EYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL-----------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDP  188 (323)
Q Consensus       120 ~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~-----------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~  188 (323)
                      ..++.++|.|.+.++.|. ...|.|+++|..+......           ++.| .....|.|..-.......|+|.+ .+
T Consensus        18 ~~~~~~tl~C~~~~f~P~-~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gty-s~~S~L~v~~~~w~~g~~ytC~V-~H   94 (108)
T d1ow0a2          18 ALNELVTLTCLARGFSPK-DVLVRWLQGSQELPREKYLTWASRQEPSQGTTTF-AVTSILRVAAEDWKKGDTFSCMV-GH   94 (108)
T ss_dssp             TSSSEEEEEEEEEEESSS-CCEEEEEETTEECCGGGSEECCCEECSCSSSCCE-EEEEEEEEEHHHHHHTCCEEEEE-EC
T ss_pred             ccCCceEEEEEEEEeECC-CEEEEEEECCeEcCCCceEcccceecccCCCCcE-EEEEEEEEcHHHhCCCCEEEEEE-Ee
Confidence            357889999999997665 4799999999887641110           1111 12234444443333456899999 56


Q ss_pred             C
Q psy15235        189 K  189 (323)
Q Consensus       189 ~  189 (323)
                      .
T Consensus        95 ~   95 (108)
T d1ow0a2          95 E   95 (108)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.73  E-value=8.1e-05  Score=47.17  Aligned_cols=66  Identities=12%  Similarity=0.345  Sum_probs=40.0

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcE-Eece---eEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRL-TQSK---DSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~~---~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      +..++|.|.+.++.|. ...|+|.++|..+.......... ....   .....-.+..++...|+|.+ .+.
T Consensus        15 ~~~~~L~C~~~gFyP~-~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V-~H~   84 (94)
T d1hyrc1          15 EGNITVTCRASGFYPW-NITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYM-EHS   84 (94)
T ss_dssp             SSEEEEEEEEEEEBSS-CCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEE-EET
T ss_pred             CCCEEEEEEEEEEECC-CcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEE-EEC
Confidence            5678999999998766 58999999998776411111111 1111   11112233445556899999 554

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.73  E-value=7.8e-05  Score=49.24  Aligned_cols=72  Identities=22%  Similarity=0.383  Sum_probs=49.6

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      +....++.+|+++.|.|.+.+..-. ...+.|+|  .|+.+      ..       .+..++|+.      .....|.+.
T Consensus         6 esG~~~~kpg~sl~LsC~~SG~s~~-~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~   84 (128)
T d2nxyd1           6 ESGAEVKKPGSSVKVSCKASGDTFI-RYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELR   84 (128)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGG-GEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCcc-CCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeee
Confidence            3444567889999999999986522 34678887  23211      10       233456665      234668899


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTA~YYCAr   98 (128)
T d2nxyd1          85 NLRSDDTAVYFCAG   98 (128)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             eccccCceEEEEeE
Confidence            99999999999987

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.72  E-value=3.3e-05  Score=49.43  Aligned_cols=67  Identities=18%  Similarity=0.347  Sum_probs=44.0

Q ss_pred             EEecCCcEEEEEEeecCCCCCCceEEEEEC--Ceec------cc------cccccCcEE------eceeEEEEeeeecCC
Q psy15235        118 VFEYRVPFTLKCNVTSPPPGDDYQIVWYKG--NKSI------TE------ATELSGRLT------QSKDSITIRKTTVDD  177 (323)
Q Consensus       118 ~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~--~~~~------~~------~~~~~~~~~------~~~~~l~i~~~~~~d  177 (323)
                      ++.+|+++.|.|.+.+.... ...+.|+|.  |+.+      ..      .+..++|+.      .....|+|.+++.+|
T Consensus         4 lvkPG~sl~LsC~~SG~~~~-~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eD   82 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFS-GGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPED   82 (107)
T ss_dssp             CCCTTCCEEEEECCCC------CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGG
T ss_pred             EecCCCCcEEEEEECCCCcc-CCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCccc
Confidence            35679999999999875322 457789873  2221      11      233345654      234568999999999


Q ss_pred             CeeEEEEE
Q psy15235        178 AGQYSCRL  185 (323)
Q Consensus       178 ~G~y~C~~  185 (323)
                      ++.|.|..
T Consensus        83 tAvYyCA~   90 (107)
T d1sjva_          83 TAVYYCYT   90 (107)
T ss_dssp             CSEEEEEE
T ss_pred             ceeeeEec
Confidence            99999976

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=4e-05  Score=46.73  Aligned_cols=56  Identities=21%  Similarity=0.483  Sum_probs=42.9

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEEeceeEEEEeeeec-CCCeeEEEEE
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLTQSKDSITIRKTTV-DDAGQYSCRL  185 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~  185 (323)
                      ..+.-.|.+|+|+|...+.     ..|.|.+++..+..         .....|.+.+.+. +++|.|.|..
T Consensus         8 ykVSISGTtV~LTCP~~~~-----~~I~Wkkn~~~i~g---------~~~~~L~L~~FSE~e~SGyY~C~~   64 (100)
T d1jbja2           8 YKVSISGTSVELTCPLDSD-----ENLKWEKNGQELPQ---------KHDKHLVLQDFSEVEDSGYYVCYT   64 (100)
T ss_dssp             CEEEEETTEEEEECSSCCC-----TTCEEEETTEEECS---------CCCSEEEEESCCTTTSCEEEEEEC
T ss_pred             EEEEEeCCEEEEECCCCCC-----CceEEeeccccCCC---------CCCcEEEEccccccccCcceEEec
Confidence            3445569999999986653     36999999988876         3455788887665 7999999966

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.71  E-value=6.7e-05  Score=49.26  Aligned_cols=70  Identities=16%  Similarity=0.323  Sum_probs=48.2

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|+++.|.|.+.+..-. ...+.|+|  .|+.+      ..       .+..++|+.      .....|.+.++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~s-~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL   86 (122)
T d1bz7b1           8 GGGLVQPGGSRKLSCAASGFTFS-NFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSL   86 (122)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEEcCCCCc-CCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeee
Confidence            34557789999999999986421 34688987  23211      11       233456665      23457889999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDTAvYYCAr   98 (122)
T d1bz7b1          87 RSEDTAIYYCTR   98 (122)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cccCceEEEeec
Confidence            999999999976

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.71  E-value=0.0001  Score=47.94  Aligned_cols=70  Identities=16%  Similarity=0.346  Sum_probs=48.4

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc------c------cccccCcEE------eceeEEEEeeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT------E------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~------~------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ...++.+|+++.|.|.+.|+.-. ...+.|+|  .|+.+.      .      .+..++|+.      .+...|.|.+++
T Consensus         8 g~~~vkPG~Sl~LsC~~SG~~~~-~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~   86 (118)
T d1lo4h1           8 GGDLVKPGGSLTLSCEASGFTLR-TYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLR   86 (118)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTT-TSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEECCCccc-CCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeecccccc
Confidence            34567789999999999986432 45888987  232211      1      133345554      234578999999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        87 ~eDtA~YyCAr   97 (118)
T d1lo4h1          87 SEDTAIYYCAR   97 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEecc
Confidence            99999999976

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.71  E-value=6e-05  Score=49.94  Aligned_cols=72  Identities=15%  Similarity=0.368  Sum_probs=49.4

Q ss_pred             CCceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEe
Q psy15235        113 EPKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       113 ~~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ++...++.+|+++.|.|.+.+..-. ...+.|+|  .|+.+      ..       .+..++|+.      .....|.+.
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~~~s-~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~   84 (130)
T d1rzga1           6 QSGAEVKKPGSSVKVSCKASGGTFS-NYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELS   84 (130)
T ss_dssp             ECCCEEECTTCCEEEEEECCSSCGG-GCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eECCceECCCCCEEEEEEEcCCCCC-CCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeee
Confidence            4455668889999999999876422 34788987  33211      11       233455654      234568889


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDtA~YYCAr   98 (130)
T d1rzga1          85 SLRSEDTAVFYCAS   98 (130)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ecCCCccEEEEEEE
Confidence            99999999999976

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.70  E-value=3.2e-06  Score=54.18  Aligned_cols=73  Identities=14%  Similarity=0.247  Sum_probs=44.0

Q ss_pred             ceEEecCCcEEEEEEec-cCceEEEEEc--Ccccee----e-----ccCcceEEEeeeeCCeEEEEEeecc--cCcceEE
Q psy15235         30 DTEIMEGAPINISCILT-IFEQVKWQLN--GRNINQ----S-----SVDSGFAATANLTEDNFKYSIHEAI--LESGYVQ   95 (323)
Q Consensus        30 ~~~v~~G~~v~L~C~~~-~~~~v~W~~~--g~~~~~----~-----~~~~~~~~~~~~~~~~~~l~i~~~~--~~G~Y~C   95 (323)
                      .+.|.+|++|+|+|... ....+.|||.  |+.+..    .     ....+.....+.....+.|.|.++.  |+|.|.|
T Consensus         2 slsV~eG~~vtL~C~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKTSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSSCEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             CceECCCCCEEEEEEEeCCcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            35688999999999843 3457999983  322211    0     0111222233333445667777665  5999999


Q ss_pred             EeeccCC
Q psy15235         96 SSLFIPR  102 (323)
Q Consensus        96 ~~~~~~~  102 (323)
                      .+....+
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            8865443

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=0.00012  Score=47.77  Aligned_cols=73  Identities=15%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             eceEEecCCcEEEEEEec----cCceEEEEEc--Cccce---eec---------cCcceEEEeeeeCCeEEEEEeeccc-
Q psy15235         29 GDTEIMEGAPINISCILT----IFEQVKWQLN--GRNIN---QSS---------VDSGFAATANLTEDNFKYSIHEAIL-   89 (323)
Q Consensus        29 ~~~~v~~G~~v~L~C~~~----~~~~v~W~~~--g~~~~---~~~---------~~~~~~~~~~~~~~~~~l~i~~~~~-   89 (323)
                      +...+.||++++|.|...    ....+.|+|.  |+...   ...         ...+..+..+...+.+.|.|.+++. 
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            345689999999999954    2356899993  33211   110         1112223344457778888887654 


Q ss_pred             -CcceEEEeeccC
Q psy15235         90 -ESGYVQSSLFIP  101 (323)
Q Consensus        90 -~G~Y~C~~~~~~  101 (323)
                       +|.|+|......
T Consensus        83 Dsa~YyCa~~~~~   95 (110)
T d1u9ka_          83 DSGLYRCVIYHPP   95 (110)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             CCEEEEEEEeCCC
Confidence             999999986443

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.69  E-value=8.5e-05  Score=48.83  Aligned_cols=69  Identities=19%  Similarity=0.345  Sum_probs=47.9

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ..++.+|+++.|.|.+.+..-. ...+.|+|  .|+.+      ..       .+..++|+.      .....|.|.+++
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~-~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~   87 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRIS-AHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCeEEEEeECCccCc-CcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC
Confidence            3567889999999999885422 34788987  23221      11       233355654      234678899999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (125)
T d1op3h1          88 VEDTAIYYCAR   98 (125)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CccceeEeEee
Confidence            99999999976

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.2e-05  Score=49.61  Aligned_cols=67  Identities=16%  Similarity=0.394  Sum_probs=42.0

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+.+++|.|.+.++.|. ...|+|+++|..+...........     .....|.|..-.......|+|++ .+.
T Consensus        20 ~~~tv~L~Cl~~~f~P~-~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V-~H~   91 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPG-TIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQV-TYQ   91 (104)
T ss_dssp             CCSEEEEEEEEEEECCC-CEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEE-EET
T ss_pred             CCCeEEEEEEEEEEECC-CcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEE-EEC
Confidence            35679999999997665 579999999988765211111111     22334555443333456799999 555

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.69  E-value=0.00013  Score=48.44  Aligned_cols=71  Identities=17%  Similarity=0.331  Sum_probs=49.7

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------c-c------cccccCcEE------eceeEEEEee
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------T-E------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~-~------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      ....++.+|+++.|.|.+.+..-. ...+.|+|  .|+.+      . .      .+..++|+.      .....|.+.+
T Consensus         6 sG~~~vkPg~sl~LsC~~SG~~~s-~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~   84 (133)
T d1rzfh1           6 SGAEVNKPGSSVKVSCQASGATLN-SHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRG   84 (133)
T ss_dssp             CCCEEECTTCCEEEEEEESSSCST-TEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCceECCCCCEEEEEEEcCCCcc-CCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeecc
Confidence            445668889999999999886532 45788987  23211      1 0      233456665      2345788999


Q ss_pred             eecCCCeeEEEEE
Q psy15235        173 TTVDDAGQYSCRL  185 (323)
Q Consensus       173 ~~~~d~G~y~C~~  185 (323)
                      ++.+|++.|.|..
T Consensus        85 L~~eDtA~YYCAr   97 (133)
T d1rzfh1          85 LRSDDTAVYYCAS   97 (133)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             CCCCCCEEEEeee
Confidence            9999999999976

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=6.1e-05  Score=48.62  Aligned_cols=66  Identities=20%  Similarity=0.362  Sum_probs=42.3

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++.++|.|.+.++.|. ...|+|+++|..+...........      .....|.|..-.......|+|.+ .+.
T Consensus        20 ~~~~tl~C~v~~f~P~-~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V-~H~   91 (102)
T d1q0xl2          20 TAKATLVCTITDFYPG-VVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQV-THE   91 (102)
T ss_dssp             TTEEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEE-EET
T ss_pred             CCeEEEEEEEeeeeCC-CCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEE-EEC
Confidence            5678999999998765 579999999987654211111111      22344555444434566899999 554

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.68  E-value=8.5e-05  Score=48.89  Aligned_cols=70  Identities=19%  Similarity=0.358  Sum_probs=48.1

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+..++|+.      .+...|.+.++
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~-~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L   86 (126)
T d1dfbh1           8 GGGLVQPGRSLRLSCAASGFTFN-DYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSL   86 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEECCcccc-CCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeee
Confidence            34567889999999999886422 34788987  23211      11       233455655      23456899999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDtavYYCAr   98 (126)
T d1dfbh1          87 RAEDMALYYCVK   98 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEEe
Confidence            999999999976

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.67  E-value=5.4e-05  Score=49.39  Aligned_cols=71  Identities=18%  Similarity=0.404  Sum_probs=49.0

Q ss_pred             CceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------c---c------cccccCcEE------eceeEEEE
Q psy15235        114 PKYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------T---E------ATELSGRLT------QSKDSITI  170 (323)
Q Consensus       114 ~~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~---~------~~~~~~~~~------~~~~~l~i  170 (323)
                      ....++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      .   .      .+..++|+.      .+...|.+
T Consensus         7 SG~~~vkPG~sl~LsC~~SG~~~~-~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~   85 (121)
T d1nfdf1           7 SGGDLVQPGSSLKVSCAASGFTFS-DFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQM   85 (121)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGG-GEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCc-CCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeecee
Confidence            345668899999999999986532 35678988  33221      1   0      123344554      33456899


Q ss_pred             eeeecCCCeeEEEEE
Q psy15235        171 RKTTVDDAGQYSCRL  185 (323)
Q Consensus       171 ~~~~~~d~G~y~C~~  185 (323)
                      .+++.+|++.|.|..
T Consensus        86 ~~L~~eDTAvYYCAr  100 (121)
T d1nfdf1          86 NRLRVDDTAIYYCTR  100 (121)
T ss_dssp             ESCCGGGCEECEEEE
T ss_pred             cccCCCcceEEEEec
Confidence            999999999999976

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=6e-05  Score=48.66  Aligned_cols=67  Identities=16%  Similarity=0.277  Sum_probs=41.8

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .++.++|.|.+.++.|. ...|+|++||..............     .....|.+..-.......|+|.+ .+.
T Consensus        18 ~~~~~tL~Clv~gf~P~-~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V-~H~   89 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPS-DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV-MHE   89 (102)
T ss_dssp             GSSEEEEEEEEEEEBSS-CCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEE-ECT
T ss_pred             cCCceEEEEEEEEeECC-CCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEE-EeC
Confidence            36789999999997665 579999999987543111111111     22334555443333445799999 665

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=6.2e-05  Score=49.04  Aligned_cols=65  Identities=14%  Similarity=0.269  Sum_probs=41.4

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeecccccc--------ccCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATE--------LSGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++.++|.|.+.++.|. ...|+|.+||..+.....        .++.| .....|.|..-.......|+|.+ .+.
T Consensus        20 ~~~~tL~Cl~~~f~P~-~i~v~W~~ng~~~~~~~~~~~~~~~~~dgty-s~~S~L~v~~~~W~~g~~ytC~V-~H~   92 (107)
T d1mjul2          20 SGGASVVCFLNNFYPK-DINVKWKIDGSERQNGVLNSWTDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEA-THK   92 (107)
T ss_dssp             TTEEEEEEEEEEEBSS-CCEEEEEETTEEECTTEEEEECCCCTTTCCE-EEEEEEEEEHHHHHTCCEEEEEE-ECT
T ss_pred             CCceEEEEEEEEeECC-CCEEEEEECCEEccCCeEeccccEecCCCCE-EEEEEEEECHHHhCCCCEEEEEE-EEC
Confidence            5679999999997765 479999999987654110        01111 22234555444333456899999 665

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.66  E-value=0.00011  Score=49.05  Aligned_cols=70  Identities=19%  Similarity=0.354  Sum_probs=46.8

Q ss_pred             eeEEecCCcEEEEEEeecCCCCC-CceEEEEEC--Ceeccc------------cccccCcEE------eceeEEEEeeee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGD-DYQIVWYKG--NKSITE------------ATELSGRLT------QSKDSITIRKTT  174 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~-~~~i~W~~~--~~~~~~------------~~~~~~~~~------~~~~~l~i~~~~  174 (323)
                      ..++.+|++++|.|.+.+..-.. ..-+.|+|.  |+.+..            .+..++|+.      .....|.|.+++
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~   88 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS   88 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence            34577899999999998754210 235889972  222110            123355654      233569999999


Q ss_pred             cCCCeeEEEEE
Q psy15235        175 VDDAGQYSCRL  185 (323)
Q Consensus       175 ~~d~G~y~C~~  185 (323)
                      .+|++.|.|..
T Consensus        89 ~eDtAvYYCAr   99 (132)
T d1tjgh1          89 PVDTATYFCAH   99 (132)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccceEEEEEE
Confidence            99999999987

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.66  E-value=0.00011  Score=48.48  Aligned_cols=70  Identities=19%  Similarity=0.385  Sum_probs=47.4

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeecc------c------cccccCcEE------eceeEEEEeeeec
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSIT------E------ATELSGRLT------QSKDSITIRKTTV  175 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~~------~------~~~~~~~~~------~~~~~l~i~~~~~  175 (323)
                      ..++.+|+++.|.|.+.+..-.....+.|+|  .|+.+.      .      .+..++|+.      .....|.+.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~   88 (127)
T d3cx5j1           9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTT   88 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccc
Confidence            3457789999999999986421024688987  343221      1      223344553      3346789999999


Q ss_pred             CCCeeEEEEE
Q psy15235        176 DDAGQYSCRL  185 (323)
Q Consensus       176 ~d~G~y~C~~  185 (323)
                      +|++.|.|..
T Consensus        89 eDtAvYyCAr   98 (127)
T d3cx5j1          89 EDTATYYCAR   98 (127)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccceEEEeee
Confidence            9999999975

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.66  E-value=0.00011  Score=48.71  Aligned_cols=73  Identities=22%  Similarity=0.352  Sum_probs=48.9

Q ss_pred             eeEEeeCCeEEEEEEEecCCC--CcEEEEE--CCeeee------------------ccCCeeeeecCCCCCCcceeEEEe
Q psy15235        214 TLTVIEGEKLRLECLVVGSPP--PTVEWRI--GNDTYF------------------RSQGRIKLSEHPEKGTANSVLQID  271 (323)
Q Consensus       214 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~L~i~  271 (323)
                      ...+++|++++|+|.+.|..-  ..+.|++  .|+.+.                  .-.+|++++.  ++......|.+.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~--D~s~nt~~Lq~~   86 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISR--DDSKNTLYLQMN   86 (131)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEE--EGGGTEEEEEEC
T ss_pred             CceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEec--ccccceeeccee
Confidence            456788999999999987643  3588886  222211                  0123555552  222245679999


Q ss_pred             ecCcCCCeEEEEEEeec
Q psy15235        272 EATMADRGNYYCHGNNV  288 (323)
Q Consensus       272 ~v~~~d~G~y~C~a~n~  288 (323)
                      +++.+|++.|.|.....
T Consensus        87 ~L~~eDTAvYYCAR~~~  103 (131)
T d3c2ah1          87 SLKTEDTAVYSCTTDGF  103 (131)
T ss_dssp             SCCGGGCEEEEEEEEEE
T ss_pred             ccccCCceEEEEecccc
Confidence            99999999999986543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.65  E-value=9.6e-05  Score=48.82  Aligned_cols=70  Identities=20%  Similarity=0.368  Sum_probs=48.3

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc-------cccccCcEE------eceeEEEEeee
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE-------ATELSGRLT------QSKDSITIRKT  173 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~-------~~~~~~~~~------~~~~~l~i~~~  173 (323)
                      ...++.+|+++.|.|.+.|..-. ...+.|+|  .|+.+      ..       .+..++|+.      .+...|.+.++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~~~~-~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L   86 (127)
T d2fb4h1           8 GGGVVQPGRSLRLSCSSSGFIFS-SYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSL   86 (127)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEECCCCcc-CCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeee
Confidence            34557789999999999886422 45788987  23221      11       123455654      33467889999


Q ss_pred             ecCCCeeEEEEE
Q psy15235        174 TVDDAGQYSCRL  185 (323)
Q Consensus       174 ~~~d~G~y~C~~  185 (323)
                      +.+|++.|.|..
T Consensus        87 ~~eDTA~YYCAr   98 (127)
T d2fb4h1          87 RPEDTGVYFCAR   98 (127)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             eecceeEEEEEE
Confidence            999999999976

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.65  E-value=0.00045  Score=44.25  Aligned_cols=77  Identities=9%  Similarity=0.108  Sum_probs=46.5

Q ss_pred             eEEecCCcEEEEEEec---c-CceEEEEEcCccceeeccCcceEEEeeeeCCeEEE----EEeecccCcceEEEeeccCC
Q psy15235         31 TEIMEGAPINISCILT---I-FEQVKWQLNGRNINQSSVDSGFAATANLTEDNFKY----SIHEAILESGYVQSSLFIPR  102 (323)
Q Consensus        31 ~~v~~G~~v~L~C~~~---~-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~l----~i~~~~~~G~Y~C~~~~~~~  102 (323)
                      ..+..|+..+|.|.+.   | ...|.|.+||..+....    ........++.+.+    .+.. .+...|+|.+.+.+-
T Consensus        13 ~p~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~----~~~~~~~~dgty~~~S~L~v~~-~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          13 KPLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFG----PTFVSAVDGLSFQAFSYLNFTP-EPSDIFSCIVTHEPD   87 (103)
T ss_dssp             SCCCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCC----CEEEEEETTTEEEEEEEEEECC-CTTCCEEEEEEETTT
T ss_pred             CchhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcE----eceEEeCCCCcEEEEEEEEEec-CCCCEEEEEEEeCCC
Confidence            3456799999999944   3 46899999998754431    11111222343433    2222 236679999988766


Q ss_pred             ccceeeeeee
Q psy15235        103 MNAITGNYDI  112 (323)
Q Consensus       103 ~~~~~~~~~~  112 (323)
                      ...+...+..
T Consensus        88 ~~p~~~~w~~   97 (103)
T d1hdma1          88 RYTAIAYWVP   97 (103)
T ss_dssp             TEEEEEEECC
T ss_pred             CCCEEEEecC
Confidence            5555555554

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.64  E-value=0.0001  Score=48.23  Aligned_cols=70  Identities=20%  Similarity=0.385  Sum_probs=47.9

Q ss_pred             ceeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc---------cccccCcEE------eceeEEEEe
Q psy15235        115 KYKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE---------ATELSGRLT------QSKDSITIR  171 (323)
Q Consensus       115 ~~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~---------~~~~~~~~~------~~~~~l~i~  171 (323)
                      ...++.+|+++.|.|.+.+..-. ...+.|+|  .|+.+      ..         .+..++|+.      .....|++.
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~~-~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~   86 (122)
T d1q9rb1           8 GGGLVQSGGSLRLSCATSGFTFT-DYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (122)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCc-CCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceecccee
Confidence            34567789999999999886522 34688997  33221      10         123345654      233568999


Q ss_pred             eeecCCCeeEEEEE
Q psy15235        172 KTTVDDAGQYSCRL  185 (323)
Q Consensus       172 ~~~~~d~G~y~C~~  185 (323)
                      +++.+|++.|.|..
T Consensus        87 sL~~eDTAvYYCar  100 (122)
T d1q9rb1          87 TLRAEDSATYYCAR  100 (122)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             eeccCcceEEEEEe
Confidence            99999999999987

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=2e-05  Score=51.37  Aligned_cols=73  Identities=23%  Similarity=0.394  Sum_probs=48.1

Q ss_pred             eEEeeCCeEEEEEEEecCCC--CcEEEEE--CCeeee------cc---------CCeeeeecCCCCCCcceeEEEeecCc
Q psy15235        215 LTVIEGEKLRLECLVVGSPP--PTVEWRI--GNDTYF------RS---------QGRIKLSEHPEKGTANSVLQIDEATM  275 (323)
Q Consensus       215 ~~~~~g~~~~l~C~~~g~p~--~~~~W~~--~~~~~~------~~---------~~~~~~~~~~~~~~~~~~L~i~~v~~  275 (323)
                      ..+++|++++|+|.+.|..-  -.+.|++  .|+.+.      ..         .+|++++.  +.......|.+.+++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~--D~s~~tv~L~~~~L~~   87 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISR--DTSKNQVFLKMNSLQT   87 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEE--EGGGTEEECCEESCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEcc--ccccchhhcceeccCC
Confidence            45678999999999988643  3588987  232221      11         23445542  2222345689999999


Q ss_pred             CCCeEEEEEEeecc
Q psy15235        276 ADRGNYYCHGNNVA  289 (323)
Q Consensus       276 ~d~G~y~C~a~n~~  289 (323)
                      +|++.|.|......
T Consensus        88 eDTAvYyCAr~~~~  101 (116)
T d1fn4b1          88 DDTGTYYCTRDLYG  101 (116)
T ss_dssp             CCCEEEEEEEECSS
T ss_pred             CCCEEEEEEeecCC
Confidence            99999999654433

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00013  Score=48.45  Aligned_cols=69  Identities=12%  Similarity=0.277  Sum_probs=41.1

Q ss_pred             eEEecCCcEEEEEEeecCCCCCCceEEEEEC-Ceeccc-----------cccccCcEE------eceeEEEEeeeecCCC
Q psy15235        117 KVFEYRVPFTLKCNVTSPPPGDDYQIVWYKG-NKSITE-----------ATELSGRLT------QSKDSITIRKTTVDDA  178 (323)
Q Consensus       117 ~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~~-~~~~~~-----------~~~~~~~~~------~~~~~l~i~~~~~~d~  178 (323)
                      .++..|++++|.|...+........+.|++. +.....           ......++.      .....|+|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            3466799999999886543110223445552 211100           011122222      3445799999999999


Q ss_pred             eeEEEEE
Q psy15235        179 GQYSCRL  185 (323)
Q Consensus       179 G~y~C~~  185 (323)
                      |.|.|.+
T Consensus        90 avYyCa~   96 (118)
T d1yjdc1          90 DIYFCKI   96 (118)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9999987

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=3.5e-05  Score=49.89  Aligned_cols=69  Identities=20%  Similarity=0.267  Sum_probs=43.2

Q ss_pred             eCCeEEEEEEEecC-CC---CcEEEEECCeeeeccCCeeeeecCCCCC--CcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PP---PTVEWRIGNDTYFRSQGRIKLSEHPEKG--TANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .+.+++|.|.+.|. |.   ..++|+++|..+..........  ..++  ...+.|+|..-.....-.|+|.+.+..
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~--~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEK--QSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEE--CTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEE--CCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            46678999999774 53   4789999998765322111111  1122  234566666555445557999999976

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.61  E-value=0.00013  Score=48.06  Aligned_cols=74  Identities=11%  Similarity=0.110  Sum_probs=44.5

Q ss_pred             EEeeceEEecCCcEEEEEEe-ccCceEEEEEc--Cccceee-----------ccCcceEEEeeeeCCeEEEEEeecc--c
Q psy15235         26 TYFGDTEIMEGAPINISCIL-TIFEQVKWQLN--GRNINQS-----------SVDSGFAATANLTEDNFKYSIHEAI--L   89 (323)
Q Consensus        26 ~~~~~~~v~~G~~v~L~C~~-~~~~~v~W~~~--g~~~~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~--~   89 (323)
                      +.|..+.+.+|++|+|.|.. .....+.|||.  |+.+..-           ................+.|.|.++.  |
T Consensus         6 Q~P~~~~~~~G~~v~l~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           6 QSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             EECSEEEEETTCCCEEEEECCTTCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             EcCCEEEEeCCCCEEEEEEeCCCCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            44667889999999999993 34467999993  2221110           0001111111222445677777765  4


Q ss_pred             CcceEEEeec
Q psy15235         90 ESGYVQSSLF   99 (323)
Q Consensus        90 ~G~Y~C~~~~   99 (323)
                      +|.|+|....
T Consensus        86 sa~YyCa~~~   95 (113)
T d1nfdb1          86 SAMYFCASSL   95 (113)
T ss_dssp             CEEECEEEES
T ss_pred             ceeEEEEeec
Confidence            9999998753

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.60  E-value=8.5e-05  Score=48.88  Aligned_cols=74  Identities=18%  Similarity=0.193  Sum_probs=44.3

Q ss_pred             EeeceEEecCCcEEEEEEec-cCceEEEEEc--Cccceee-----------ccCcceEEEeeeeCCeEEEEEeecc--cC
Q psy15235         27 YFGDTEIMEGAPINISCILT-IFEQVKWQLN--GRNINQS-----------SVDSGFAATANLTEDNFKYSIHEAI--LE   90 (323)
Q Consensus        27 ~~~~~~v~~G~~v~L~C~~~-~~~~v~W~~~--g~~~~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~--~~   90 (323)
                      .|..+.+.+|++|+|.|... ....+.|||.  |+.+..-           ................+.|.|..+.  |+
T Consensus         4 sP~~~~~~~G~svtL~C~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   83 (112)
T d2cdeb1           4 TPRYLVIGTGKKITLECSQTMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHT   83 (112)
T ss_dssp             ECSEEEEETTCCBCCEEEETTCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTC
T ss_pred             CCCEEEECCCCCEEEEEEEeCCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccc
Confidence            45567889999999999943 4467999993  2222110           0111111111223455667776654  59


Q ss_pred             cceEEEeecc
Q psy15235         91 SGYVQSSLFI  100 (323)
Q Consensus        91 G~Y~C~~~~~  100 (323)
                      |.|.|.+...
T Consensus        84 a~YyCA~~~~   93 (112)
T d2cdeb1          84 SQYLCASSEN   93 (112)
T ss_dssp             SEEEEEEECS
T ss_pred             ccEEEEEecC
Confidence            9999987644

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.59  E-value=0.00013  Score=48.40  Aligned_cols=69  Identities=19%  Similarity=0.354  Sum_probs=48.0

Q ss_pred             eeEEecCCcEEEEEEeecCCCCCCceEEEEE--CCeec------cc---------cccccCcEE------eceeEEEEee
Q psy15235        116 YKVFEYRVPFTLKCNVTSPPPGDDYQIVWYK--GNKSI------TE---------ATELSGRLT------QSKDSITIRK  172 (323)
Q Consensus       116 ~~~~~~g~~v~l~C~~~~~~~~~~~~i~W~~--~~~~~------~~---------~~~~~~~~~------~~~~~l~i~~  172 (323)
                      ..++.+|++++|.|.+.+..-. ...+.|+|  .|+.+      ..         .+..++|+.      .....|.+.+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s-~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~   87 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVASGFTFS-DVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNS   87 (131)
T ss_dssp             CCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CceECCCCCeEEEEEECCCCCc-CCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceec
Confidence            3457789999999999886532 34788987  23221      10         233455665      2346688999


Q ss_pred             eecCCCeeEEEEE
Q psy15235        173 TTVDDAGQYSCRL  185 (323)
Q Consensus       173 ~~~~d~G~y~C~~  185 (323)
                      ++.+|++.|.|..
T Consensus        88 L~~eDTAvYYCAR  100 (131)
T d3c2ah1          88 LKTEDTAVYSCTT  100 (131)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCCceEEEEec
Confidence            9999999999977

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=8.4e-05  Score=47.94  Aligned_cols=66  Identities=12%  Similarity=0.267  Sum_probs=41.9

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+.++|.|.+.++.|. ...|.|.+||.+............     .....|.|..-.......|+|.+ .+.
T Consensus        19 ~~~~~L~C~v~~f~P~-~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V-~H~   89 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPP-DIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSV-LHE   89 (102)
T ss_dssp             SSEEEEEEEEEEEBSS-CCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEE-ECT
T ss_pred             CCeEEEEEEEEEEECC-CCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEE-EeC
Confidence            5779999999998765 479999999987653111111111     22334455544334455899999 565

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00013  Score=47.46  Aligned_cols=65  Identities=12%  Similarity=0.288  Sum_probs=41.5

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccc--------cCcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATEL--------SGRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++.++|.|.+.++.|. ...|+|++||..+......        ++.| .....|.|..-.-.....|+|.+ .+.
T Consensus        20 ~~~~~L~Clv~~f~P~-~i~v~W~~ng~~~~~~~~~~~~~~~~~dgty-s~~S~L~v~~~~W~~~~~ytC~V-~H~   92 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPR-EAKVQWKVDNALQSGNSQESVTEQDSKDSTY-SLSSTLTLSKADYEKHKVYACEV-THQ   92 (107)
T ss_dssp             TTEEEEEEEEEEEBSS-CCEEEEEETTEECCSSEEEEECCCCTTTCCE-EEEEEEEEEHHHHTTCCEEEEEE-ECT
T ss_pred             CCceEEEEEEEEeeCC-CCEEEEEECCEECCCCEEEecccccCCCCcE-EEEEEEEECHHHhCCCCEEEEEE-EEC
Confidence            5789999999998765 5799999999876541110        1112 22334555443333444899999 665

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=5.3e-05  Score=48.93  Aligned_cols=66  Identities=15%  Similarity=0.335  Sum_probs=41.6

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE------eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT------QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      ++.++|.|.+.++.|. ...|.|+++|..+...........      .....|.|..........|+|.+ .+.
T Consensus        20 ~~~~tL~C~v~~f~P~-~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V-~H~   91 (102)
T d1rzfl2          20 ANKATLVCLISDFYPG-AVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQV-THE   91 (102)
T ss_dssp             TTCEEEEEEEEEEBSS-CCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEE-EET
T ss_pred             CCcEEEEEEEEeeCCC-CeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEE-EEC
Confidence            6779999999997665 579999999988765211111111      22334444443323345799999 554

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=8.8e-05  Score=47.80  Aligned_cols=70  Identities=13%  Similarity=0.214  Sum_probs=43.7

Q ss_pred             eCCeEEEEEEEecC-CCC--cEEEEECCeeeeccCCeeeeecCCCCCCcceeEEEeecCcCCCeEEEEEEeecc
Q psy15235        219 EGEKLRLECLVVGS-PPP--TVEWRIGNDTYFRSQGRIKLSEHPEKGTANSVLQIDEATMADRGNYYCHGNNVA  289 (323)
Q Consensus       219 ~g~~~~l~C~~~g~-p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~y~C~a~n~~  289 (323)
                      .++.+.|.|.+.|+ |+.  .+.|.+|+..+.......... ........+.|+|..........|+|.|.+..
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~-~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s   90 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALA-SGGRYTMSNQLTLPAVECPEGESVKCSVQHDS   90 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEEC-SSSCEEEEEEEEECGGGSCTTCEEEEEEEETT
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEec-CCCCEEEEEEEEEeHHHccCCCEEEEEEEECC
Confidence            46789999999885 543  578888776543211111111 01111345778888777666668999999976

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00022  Score=47.30  Aligned_cols=73  Identities=11%  Similarity=0.135  Sum_probs=43.3

Q ss_pred             EEeeCCeEEEEEEEecCCCC--cE-EEEECC-ee---ee---c--------cCCeeeeecCCCCCCcceeEEEeecCcCC
Q psy15235        216 TVIEGEKLRLECLVVGSPPP--TV-EWRIGN-DT---YF---R--------SQGRIKLSEHPEKGTANSVLQIDEATMAD  277 (323)
Q Consensus       216 ~~~~g~~~~l~C~~~g~p~~--~~-~W~~~~-~~---~~---~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  277 (323)
                      .+.+|++++|.|...+....  .+ .|++.. ..   +.   +        ...++......  ......|+|.+++.+|
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~D   88 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKL--GNESVTFYLQNLYVNQ   88 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEE--CSSEEEEEEESCCGGG
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEEC--CCCeEEEEECCCCccc
Confidence            45679999999999654322  23 454421 11   10   0        11122222111  1135679999999999


Q ss_pred             CeEEEEEEeeccc
Q psy15235        278 RGNYYCHGNNVAT  290 (323)
Q Consensus       278 ~G~y~C~a~n~~g  290 (323)
                      +|.|.|.+....+
T Consensus        89 savYyCa~~~~~~  101 (118)
T d1yjdc1          89 TDIYFCKIEVMYP  101 (118)
T ss_dssp             CEEEEEEEEEEES
T ss_pred             CeEEEEEEecccC
Confidence            9999999877653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.54  E-value=9.6e-05  Score=47.65  Aligned_cols=66  Identities=21%  Similarity=0.339  Sum_probs=41.5

Q ss_pred             cCCcEEEEEEeecCCCCCCceEEEEECCeecccccccc------CcEEeceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        121 YRVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELS------GRLTQSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       121 ~g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .++.++|.|.+.++.|. ...|+|.++|..........      +.+ .....|.|..-.-.....|+|.+ .+.
T Consensus        18 ~~~~~tl~C~v~gf~P~-~i~v~W~~~g~~~~~~~~~~~~~~~dgty-s~~S~L~v~~~~W~~~~~ytC~V-~H~   89 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPE-DIYVEWTNNGKTELNYKNTEPVLDSDGSY-FMYSKLRVEKKNWVERNSYSCSV-VHE   89 (102)
T ss_dssp             TSSEEEEEEEEEEEBSS-CCEEEEEETTEECSSEEECCCEECTTSCE-EEEEEEEEEHHHHHTCCCEEEEE-ECT
T ss_pred             cCCcEEEEEEEEEeECC-CcEEEEEECCEEccCcEEccceeCCCCcE-EEEEEEEECHHHcCCCCEEEEEE-EeC
Confidence            36789999999997665 57999999997654311111      111 22334444433323455899999 665

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=9.8e-05  Score=47.49  Aligned_cols=66  Identities=12%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             CCcEEEEEEeecCCCCCCceEEEEECCeeccccccccCcEE-----eceeEEEEeeeecCCCeeEEEEEEcCC
Q psy15235        122 RVPFTLKCNVTSPPPGDDYQIVWYKGNKSITEATELSGRLT-----QSKDSITIRKTTVDDAGQYSCRLIDPK  189 (323)
Q Consensus       122 g~~v~l~C~~~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~y~C~~~~~~  189 (323)
                      .+.++|.|.+.++.|. ...|.|+++|..+...........     .....|.|..-.-.....|+|.+ .+.
T Consensus        18 ~~~~tL~C~v~~f~P~-~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V-~H~   88 (101)
T d1cqka_          18 KDLVSLTCMITDFFPE-DITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSV-LHE   88 (101)
T ss_dssp             SSEEEEEEEEEEEBSS-CCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEE-ECT
T ss_pred             CCcEEEEEEEEEeECC-CcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEE-EEC
Confidence            5678999999997665 579999999987653111111111     22344555443333456899999 665