Psyllid ID: psy15246

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSSDLEN
Secondary Structure (PSIPRED)
cccEEcccHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEEEccccHHHHHHcccccccEEEEEEccEEEEEEcccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHcccccccccccEEEccEEcHHHHHHHHHHHHcccHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHcccccEEEEEEEHHccHHHHHHcccccccEEEEEEccEEEEEEccccHHHHHHHHHHHHcHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHccccEcEEEEcccHHHHHHHHHHcccccccEEEEEcEEEcHHHHHHHHHHcccHHHHHHHcHHHcccc
Coil and Loop (DISEMBL)
msvvqiseeldvekygkdkTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAedlpklslnykvsaVPTFVilknlkpvdrvegadpeslDKKLQNQAstmknqpsnithvpydtfdilqDQEVREGlkiysnwptypqvvpydtfdilqDQEVREGlkiysnwptypqvyvNTELIGGLDIIKELQVANkliptldqppssdlen
Flexible Loop (DISEMBL)
msvvqiseeldvekygkdktAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNqastmknqpsnithVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKliptldqppssdlen
Low Complexity Region (SEG)
MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSSDLEN
Disordered region (IsUnstruct)
***********VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPV****************************ITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIP************
Disordered Region (DISOPRED)
*SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSN*************************NWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIP************
Disordered Region (DISEMBL)
MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD*********
Disordered Region (DISPRO)
*SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSSDLEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
O76003	335	Glutaredoxin-3 OS=Homo sa	yes	N/A	0.826	0.525	0.409	3e-34
Q9JLZ1	337	Glutaredoxin-3 OS=Rattus	yes	N/A	0.826	0.522	0.409	4e-34
Q9CQM9	337	Glutaredoxin-3 OS=Mus mus	yes	N/A	0.826	0.522	0.404	9e-34
Q28ID3	326	Glutaredoxin-3 OS=Xenopus	yes	N/A	0.826	0.539	0.398	2e-32
Q58DA7	334	Glutaredoxin-3 OS=Bos tau	yes	N/A	0.826	0.526	0.398	2e-32
Q5XJ54	326	Glutaredoxin 3 OS=Danio r	yes	N/A	0.887	0.579	0.394	8e-31
Q9ZPH2	488	Monothiol glutaredoxin-S1	yes	N/A	0.826	0.360	0.327	3e-25
O74790	244	Monothiol glutaredoxin-4	yes	N/A	0.849	0.741	0.297	1e-24
Q86H62	240	Glutaredoxin-3 homolog OS	yes	N/A	0.859	0.762	0.347	6e-24
Q0IWL9	491	Monothiol glutaredoxin-S1	yes	N/A	0.821	0.356	0.309	4e-23

>sp|O76003|GLRX3_HUMAN Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2

 Score =  144 bits (364), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 113/193 (58%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+    QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 35  VVHFWAPWAPQCAQMNEVMAELAKE--LPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 92

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPS--------------NITHV-PYDTFDIL 126
           N + +DR++GA    L KK+Q  AS+    PS               +TH  P   F   
Sbjct: 93  NSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANEHLKEDLNLRLKKLTHAAPCMLFMKG 152

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDI  D+EVR+GLK YS+WPTYPQ+YV+ ELIGG
Sbjct: 153 TPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGG 212

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 213 LDIIKELEASEEL 225

Critical negative regulator of cardiac hypertrophy and a positive inotropic regulator (By similarity). May play a role in regulating the function of the thioredoxin system. Does not posses any thyoredoxin activity since it lacks the conserved motif that is essential for catalytic activity.
Homo sapiens (taxid: 9606)

>sp|Q9JLZ1|GLRX3_RAT Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 111/193 (57%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+  +  V F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 37  VVHFWAPWAPQCVQMNDVMAELAKE--HPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFK 94

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHV---------------PYDTFDIL 126
           N + VDR++GA    L KK+Q   S+    PS   HV               P   F   
Sbjct: 95  NSQKVDRLDGAHAPELTKKVQRHVSSGSFPPSTNEHVKEDLNLRLKKLTHAAPCMLFMKG 154

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ ELIGG
Sbjct: 155 TPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELIGG 214

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 215 LDIIKELEASEEL 227

Critical negative regulator of cardiac hypertrophy and a positive inotropic regulator. May play a role in regulating the function of the thioredoxin system. Does not posses any thyoredoxin activity since it lacks the conserved motif that is essential for catalytic activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQM9|GLRX3_MOUSE Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1

 Score =  143 bits (360), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 112/193 (58%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+  +  V F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 37  VVHFWAPWAPQCVQMNDVMAELAKE--HPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFK 94

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQD------------- 128
           N + VDR++GA    L KK+Q   S+    PS   H+  D    L+              
Sbjct: 95  NSQKVDRLDGAHAPELTKKVQRHVSSGAFPPSTNEHLKEDLSLRLKKLTHAAPCMLFMKG 154

Query: 129 --QEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ ELIGG
Sbjct: 155 TPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELIGG 214

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 215 LDIIKELEASEEL 227

Critical negative regulator of cardiac hypertrophy and a positive inotropic regulator. May play a role in regulating the function of the thioredoxin system. Does not posses any thyoredoxin activity since it lacks the conserved motif that is essential for catalytic activity. Has an essential function in embryogenesis.

Mus musculus (taxid: 10090)

>sp|Q28ID3|GLRX3_XENTR Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 110/193 (56%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+    QV+F +  AE +P++S  Y+V++VPTF+  K
Sbjct: 26  VVHFWAPWAPQCTQMNEVMAELAKEQ--PQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFK 83

Query: 82  NLKPVDRVEGADPESLDKKLQNQAS------TMKNQPSN---------ITHVPYDTFDIL 126
           N + +DR++GA    L K++Q  AS      T  + P           I   P   F   
Sbjct: 84  NSQKIDRLDGAHAPELTKRVQRHASSTSFPATPNSAPKEDLNGRLKKLINAAPCMLFMKG 143

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G           Q V + +FDIL D+EVR+GLK +SNWPTYPQ YV  EL+GG
Sbjct: 144 SPQEPRCGFSRQIVALLNDQKVQFSSFDILSDEEVRQGLKTFSNWPTYPQFYVKGELVGG 203

Query: 187 LDIIKELQVANKL 199
           LDI+KE+  + +L
Sbjct: 204 LDIVKEMVASGEL 216

May play a role in regulating the function of the thioredoxin system. Does not posses any thyoredoxin activity since it lacks the conserved motif that is essential for catalytic activity.

Xenopus tropicalis (taxid: 8364)

>sp|Q58DA7|GLRX3_BOVIN Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 113/193 (58%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+  + QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 34  VVHFWAPWAPQCAQMNDVMAELAKE--HQQVSFVKLEAEAVPEVSEKYEISSVPTFLFFK 91

Query: 82  NLKPVDRVEGADPESLDKKLQNQAST--------------MKNQPSNITHV-PYDTFDIL 126
           N + +DR++GA    L KK+Q  AS+              +  +   +TH  P   F   
Sbjct: 92  NSQKIDRLDGAHAPELTKKVQRHASSGSFSPSGSEHPKEDLSLRLKKLTHAAPCMLFMKG 151

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G             + + +FDI  D+EVR+GLK YS+WPTYPQ+YV+ ELIGG
Sbjct: 152 TPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSSWPTYPQLYVSGELIGG 211

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 212 LDIIKELEASKEL 224

Critical negative regulator of cardiac hypertrophy and a positive inotropic regulator. May play a role in regulating the function of the thioredoxin system. Does not posses any thyoredoxin activity since it lacks the conserved motif that is essential for catalytic activity.

Bos taurus (taxid: 9913)

>sp|Q5XJ54|GLRX3_DANRE Glutaredoxin 3 OS=Danio rerio GN=glrx3 PE=2 SV=1

 Score =  133 bits (335), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 114/208 (54%), Gaps = 19/208 (9%)

Query: 21  AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL 80
            VVHF+A W+ +C  MN +  E++K+ K++  +F +  AE +P++S  Y++++VPTF+  
Sbjct: 25  TVVHFHAPWAPQCSQMNDVMAELAKEHKHT--MFVKLEAEAVPEVSEKYEITSVPTFLFF 82

Query: 81  KNLKPVDRVEGADPESLDKKLQNQASTMK-------------NQPSN--ITHVPYDTFDI 125
           K  + +DR++GA    L  K+Q   S                NQ     I   P   F  
Sbjct: 83  KGGEKIDRLDGAHAPELTNKVQRLGSGGGGAVGAGDVPKEDLNQRLKRLINAAPCMLFMK 142

Query: 126 LQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG 185
              QE R G             V Y +FDIL D+EVR+GLK YSNWPTYPQVYV+ ELIG
Sbjct: 143 GSPQEPRCGFSRQIIQILKDHNVQYSSFDILSDEEVRQGLKTYSNWPTYPQVYVSGELIG 202

Query: 186 GLDIIKELQVANKLIPTLDQPPSSDLEN 213
           GLDI+KEL  + +L  T   P +  LEN
Sbjct: 203 GLDIVKELVESGELENTF--PKTVSLEN 228

May play a role in regulating the function of the thioredoxin system. Does not posses any thyoredoxin activity since it lacks the conserved motif that is essential for catalytic activity.

Danio rerio (taxid: 7955)

>sp|Q9ZPH2|GRS17_ARATH Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana GN=GRXS17 PE=2 SV=1

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 106/223 (47%), Gaps = 47/223 (21%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           V+HF+A W D  K M+ +F  ++  + + +  F R  AE+ P++S  Y V+AVP FV  K
Sbjct: 25  VLHFWASWCDASKQMDQVFSHLA--TDFPRAHFFRVEAEEHPEISEAYSVAAVPYFVFFK 82

Query: 82  NLKPVDRVEGADPESLDKKLQNQAST-------------MKNQPSNITHVPYDTFDILQD 128
           + K VD +EGADP SL  K+   A +             +   P+ +  V  +    LQD
Sbjct: 83  DGKTVDTLEGADPSSLANKVGKVAGSSTSAEPAAPASLGLAAGPTILETVKENAKASLQD 142

Query: 129 Q----EVREGLK--------------IYSNWPTYPQV--------------VPYDTFDIL 156
           +       + LK                   P  P+               V + +FDIL
Sbjct: 143 RAQPVSTADALKSRLEKLTNSHPVMLFMKGIPEEPRCGFSRKVVDILKEVNVDFGSFDIL 202

Query: 157 QDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
            D EVREGLK +SNWPT+PQ+Y N EL+GG DI   +  + +L
Sbjct: 203 SDNEVREGLKKFSNWPTFPQLYCNGELLGGADIAIAMHESGEL 245

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|O74790|GLRX4_SCHPO Monothiol glutaredoxin-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=grx4 PE=1 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 41/222 (18%)

Query: 11  DVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYK 70
           ++ + GK++  +++FYA W+  CK MN +FD+ +K +K    VF +  AE    ++ ++ 
Sbjct: 13  EILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTK--NAVFLKIEAEKFSDIAESFD 70

Query: 71  VSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQ--- 127
           V+AVP FV++   K + R+ GA+P+ L   +      + +Q S+         + +Q   
Sbjct: 71  VNAVPLFVLIHGAKVLARISGANPQKLKAAIDEYIQPLISQISSTNASVETQVNSVQTTN 130

Query: 128 ------------DQEVREGLKIYSNW----------PTYP--------------QVVPYD 151
                       D E+ E L   +N           P+ P              Q V Y 
Sbjct: 131 TTSNTSKAPNGLDSELNERLSTLTNAHNVMLFLKGTPSEPACGFSRKLVGLLREQNVQYG 190

Query: 152 TFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193
            F+IL D  VR+GLK++S+WPT+PQ+Y+  E +GGLDI+ E+
Sbjct: 191 FFNILADDSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEM 232

Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters (By similarity). Binds one iron-sulfur cluster per dimer. The iron-sulfur cluster is bound between subunits, and is complexed by a bound glutathione and a cysteine residue from each subunit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q86H62|GLRX3_DICDI Glutaredoxin-3 homolog OS=Dictyostelium discoideum GN=glrx3 PE=3 SV=1

 Score =  110 bits (276), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 110/219 (50%), Gaps = 36/219 (16%)

Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQS---KYSQVVFARCIAEDLPKLSLNYKVSAV 74
           +K  VV F+ADWS     M  +FD+++KQ+     ++++F +  AE + ++S  Y V +V
Sbjct: 18  NKFLVVMFWADWSKPSTQMRDVFDQLAKQATNQANNKLLFLKVEAEKVHQISGRYNVKSV 77

Query: 75  PTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDIL------QD 128
           PT + L   K V  V GA+P  L  +  N + T    P         + +I+      Q+
Sbjct: 78  PTCIFLNQGKLVQSVVGANPSELALQTNNFSKTCDTLPLEEQQQQQQSEEIINKIKLDQE 137

Query: 129 QE---VREGLKIYSNW----------PTYPQV--------------VPYDTFDILQDQEV 161
           QE   + E L+   N           P  PQ                 + +FDILQDQ V
Sbjct: 138 QEKKLLNERLEKLVNQSPVMLFMKGNPEKPQCGFSNKTVTILKENGFEFGSFDILQDQAV 197

Query: 162 REGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLI 200
           R GLK YSNWPTYPQ+Y+N +L+GG DIIK+L    +LI
Sbjct: 198 RNGLKEYSNWPTYPQLYINGKLVGGYDIIKDLNEEGELI 236

May play a role in regulating the function of the thioredoxin system. Does not posses any thyoredoxin activity since it lacks the conserved motif that is essential for catalytic activity.

Dictyostelium discoideum (taxid: 44689)

>sp|Q0IWL9|GRS11_ORYSJ Monothiol glutaredoxin-S11 OS=Oryza sativa subsp. japonica GN=GRXS11 PE=2 SV=2

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 45/220 (20%)

Query: 23  VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN 82
           VHF+A W +  K M+ +F  ++    +S  VF R  AE+ P++S  Y V+AVP FV LK 
Sbjct: 25  VHFWAAWCEASKQMDEVFAHLA--VDFSHAVFLRVEAEEQPEISEAYGVTAVPYFVFLKE 82

Query: 83  LKPVDRVEGADPESLDKKLQNQAS---------------------------TMKNQPSNI 115
            K VD +EGA+P SL  K+   A                              +   ++ 
Sbjct: 83  GKTVDTLEGANPASLANKVAKLAGPASVAESAVPASLGVAAGPAVLEKVQEMAQQNGASA 142

Query: 116 THVPYDTFDILQDQEVREG--LKIYSNWPTYPQV--------------VPYDTFDILQDQ 159
           T    D  +   +Q V            P  P+               V + +FDIL D 
Sbjct: 143 TSSAEDALNKRLEQLVNSHPVFLFMKGTPEQPRCGFSRKVVDVLKQEGVEFGSFDILTDN 202

Query: 160 EVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
           +VREG+K +SNWPT+PQ+Y   EL+GG DI+  +  + +L
Sbjct: 203 DVREGMKKFSNWPTFPQLYCKGELLGGCDIVIAMHESGEL 242

May only reduce GSH-thiol disulfides, but not protein disulfides.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
296221476	335	PREDICTED: glutaredoxin-3 [Callithrix ja	0.826	0.525	0.409	8e-34
410976343	439	PREDICTED: glutaredoxin-3 [Felis catus]	0.826	0.400	0.414	2e-33
109090971	335	PREDICTED: glutaredoxin-3-like isoform 2	0.826	0.525	0.414	2e-33
355562876	305	hypothetical protein EGK_20181, partial	0.826	0.577	0.414	2e-33
403260077	354	PREDICTED: glutaredoxin-3 [Saimiri boliv	0.826	0.497	0.414	2e-33
395842601	337	PREDICTED: glutaredoxin-3 [Otolemur garn	0.826	0.522	0.414	3e-33
114633373	335	PREDICTED: glutaredoxin-3 [Pan troglodyt	0.826	0.525	0.419	3e-33
426253473	494	PREDICTED: glutaredoxin-3 [Ovis aries]	0.849	0.366	0.398	3e-33
332252753	335	PREDICTED: glutaredoxin-3 [Nomascus leuc	0.826	0.525	0.414	4e-33
297687669	335	PREDICTED: glutaredoxin-3 [Pongo abelii]	0.826	0.525	0.414	4e-33

>gi|296221476|ref|XP_002756760.1| PREDICTED: glutaredoxin-3 [Callithrix jacchus]

 Score =  149 bits (376), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 114/193 (59%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+  + QV FA+  AE +P++S  Y++S+VPTF+  K
Sbjct: 35  VVHFWAPWAPQCAQMNEVMAELAKE--HPQVSFAKLEAEGVPEVSEKYEISSVPTFLFFK 92

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHV---------------PYDTFDIL 126
           N + +DR++GA    L KK+Q  AS+    PS   H+               P   F   
Sbjct: 93  NSQKIDRLDGAHAPELTKKVQRHASSGSFPPSANEHLKEDLNLRLKKLTRAAPCMLFMKG 152

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ EL+GG
Sbjct: 153 TPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELVGG 212

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 213 LDIIKELEASEEL 225

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410976343|ref|XP_003994582.1| PREDICTED: glutaredoxin-3 [Felis catus]

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 114/193 (59%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+  + QV F +  AE +P++S  Y +S+VPTF+  K
Sbjct: 139 VVHFWAPWAPQCAQMNDVMAELAKE--HPQVSFVKLEAEAVPEVSEKYGISSVPTFLFFK 196

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPSN--------------ITHV-PYDTFDIL 126
           N + +DR++GA    L KK+Q  AS+    PS               +TH  P   F   
Sbjct: 197 NSQKIDRLDGAHAPELTKKVQRHASSGSFPPSGNEHPKEDLNLRLKKLTHAAPCMLFMKG 256

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ ELIGG
Sbjct: 257 TPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELIGG 316

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ +++L
Sbjct: 317 LDIIKELEASDEL 329

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|109090971|ref|XP_001090479.1| PREDICTED: glutaredoxin-3-like isoform 2 [Macaca mulatta] gi|402881837|ref|XP_003904468.1| PREDICTED: glutaredoxin-3 [Papio anubis]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 114/193 (59%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+  + QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 35  VVHFWAPWAPQCAQMNEVMAELAKE--HPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 92

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPS--------------NITHV-PYDTFDIL 126
           N + +DR++GA    L KK+Q  AS+    PS               +TH  P   F   
Sbjct: 93  NSQKIDRLDGAHAPELTKKVQRHASSGSFPPSANEHLKEDLNLRLKKLTHAAPCMLFMKG 152

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ ELIGG
Sbjct: 153 TPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSNWPTYPQLYVSGELIGG 212

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 213 LDIIKELEASEEL 225

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355562876|gb|EHH19470.1| hypothetical protein EGK_20181, partial [Macaca mulatta] gi|355783197|gb|EHH65118.1| hypothetical protein EGM_18467, partial [Macaca fascicularis]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 114/193 (59%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+  + QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 5   VVHFWAPWAPQCAQMNEVMAELAKE--HPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 62

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPS--------------NITHV-PYDTFDIL 126
           N + +DR++GA    L KK+Q  AS+    PS               +TH  P   F   
Sbjct: 63  NSQKIDRLDGAHAPELTKKVQRHASSGSFPPSANEHLKEDLNLRLKKLTHAAPCMLFMKG 122

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ ELIGG
Sbjct: 123 TPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSNWPTYPQLYVSGELIGG 182

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 183 LDIIKELEASEEL 195

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403260077|ref|XP_003922514.1| PREDICTED: glutaredoxin-3 [Saimiri boliviensis boliviensis]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 114/193 (59%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+  + QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 54  VVHFWAPWAPQCAQMNEVMAELAKE--HPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 111

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPS--------------NITHV-PYDTFDIL 126
           N + +DR++GA    L KK+Q  AS+    PS               +TH  P   F   
Sbjct: 112 NSQKIDRLDGAHAPELTKKVQRHASSGSFPPSANEHLKEDLNLRLKKLTHAAPCMLFMKG 171

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ ELIGG
Sbjct: 172 TPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELIGG 231

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 232 LDIIKELEASEEL 244

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395842601|ref|XP_003794104.1| PREDICTED: glutaredoxin-3 [Otolemur garnettii]

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 113/193 (58%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+  + QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 37  VVHFWAPWAPQCTQMNDVMAELAKE--HPQVSFVKLEAEAVPEVSEKYEISSVPTFLFFK 94

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHV---------------PYDTFDIL 126
           + + +DR++GA    L KK+Q  AS+    PS   HV               P   F   
Sbjct: 95  SSQKIDRLDGAHAPELTKKVQRHASSASFPPSANEHVKEDLSLRLKRLTHAAPCMLFMKG 154

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDIL D+EVR+GLK YSNWPTYPQ YV+ ELIGG
Sbjct: 155 TPQEPRCGFSKQMVEILHKHNIQFSSFDILSDEEVRQGLKAYSNWPTYPQFYVSGELIGG 214

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 215 LDIIKELEASEEL 227

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|114633373|ref|XP_508113.2| PREDICTED: glutaredoxin-3 [Pan troglodytes] gi|410227856|gb|JAA11147.1| glutaredoxin 3 [Pan troglodytes] gi|410227858|gb|JAA11148.1| glutaredoxin 3 [Pan troglodytes] gi|410295876|gb|JAA26538.1| glutaredoxin 3 [Pan troglodytes] gi|410295878|gb|JAA26539.1| glutaredoxin 3 [Pan troglodytes] gi|410340925|gb|JAA39409.1| glutaredoxin 3 [Pan troglodytes] gi|410340927|gb|JAA39410.1| glutaredoxin 3 [Pan troglodytes]

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 113/193 (58%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+    QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 35  VVHFWAPWAPQCAQMNEVMAELAKE--LPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 92

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPS--------------NITHV-PYDTFDIL 126
           N + +DR++GA    L KK+Q  AS+    PS               +TH  P   F   
Sbjct: 93  NSQKIDRLDGAHAPELTKKVQRHASSGSFPPSANEHLKEDLNLRLKKLTHAAPCMLFMKG 152

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   V + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ ELIGG
Sbjct: 153 TPQEPRCGFSKQMVEILHKHNVQFSSFDIFSDEEVRQGLKAYSNWPTYPQLYVSGELIGG 212

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 213 LDIIKELEASEEL 225

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426253473|ref|XP_004020419.1| PREDICTED: glutaredoxin-3 [Ovis aries]

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/198 (39%), Positives = 111/198 (56%), Gaps = 17/198 (8%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
           K    VVHF+A W+ +C  MN +  E++K+  + Q  F +  AE +P++S  Y++S+VPT
Sbjct: 189 KGSLLVVHFWAPWAPQCAQMNGVMAELAKE--HPQASFVKLEAEAVPEVSEKYEISSVPT 246

Query: 77  FVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITH---------------VPYD 121
           F+  KN + +DR++GA    L KK+Q  AS+    PS   H                P  
Sbjct: 247 FLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFSPSGREHPKEDLSLRLKKLTHAAPCM 306

Query: 122 TFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT 181
            F     QE R G             + + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ 
Sbjct: 307 LFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSG 366

Query: 182 ELIGGLDIIKELQVANKL 199
           ELIGGLDIIKEL+ + +L
Sbjct: 367 ELIGGLDIIKELEASKEL 384

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332252753|ref|XP_003275520.1| PREDICTED: glutaredoxin-3 [Nomascus leucogenys]

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 113/193 (58%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+    QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 35  VVHFWAPWAPQCAQMNEVMAELAKE--LPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 92

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPS--------------NITHV-PYDTFDIL 126
           N + +DR++GA    L KK+Q  AS+    PS               +TH  P   F   
Sbjct: 93  NSQKIDRLDGAHAPELTKKVQRHASSGSFPPSANEHLKEDLNLRLKKLTHAAPCMLFMKG 152

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ ELIGG
Sbjct: 153 TPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSNWPTYPQLYVSGELIGG 212

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 213 LDIIKELEASEEL 225

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297687669|ref|XP_002821331.1| PREDICTED: glutaredoxin-3 [Pongo abelii]

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 113/193 (58%), Gaps = 17/193 (8%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+    QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 35  VVHFWAPWAPQCAQMNEVMAELAKE--LPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 92

Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPS--------------NITHV-PYDTFDIL 126
           N + +DR++GA    L KK+Q  AS+    PS               +TH  P   F   
Sbjct: 93  NSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANEHLKEDLNLRLKKLTHAAPCMLFMKG 152

Query: 127 QDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG 186
             QE R G         +   + + +FDI  D+EVR+GLK YSNWPTYPQ+YV+ ELIGG
Sbjct: 153 TPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSNWPTYPQLYVSGELIGG 212

Query: 187 LDIIKELQVANKL 199
           LDIIKEL+ + +L
Sbjct: 213 LDIIKELEASEEL 225

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q68W05	GLRX2_RICTY	No assigned EC number	0.5217	0.2159	0.4144	yes	N/A
Q86H62	GLRX3_DICDI	No assigned EC number	0.3470	0.8591	0.7625	yes	N/A
P45085	GLRX4_HAEIN	No assigned EC number	0.5192	0.2441	0.4859	yes	N/A
Q9CMN5	GLRX4_PASMU	No assigned EC number	0.5217	0.2159	0.4220	yes	N/A
Q4QLD2	GLRX4_HAEI8	No assigned EC number	0.5192	0.2441	0.4859	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	213
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	4e-29
cd03028	90	cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family	2e-27
PTZ00062	204	PTZ00062, PTZ00062, glutaredoxin; Provisional	4e-23
TIGR00365	97	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4	3e-22
COG0278	105	COG0278, COG0278, Glutaredoxin-related protein [Po	7e-22
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	3e-19
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	1e-16
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	2e-13
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	3e-13
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	2e-11
PRK10824	115	PRK10824, PRK10824, glutaredoxin-4; Provisional	2e-10
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	2e-10
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	6e-09
cd02957	113	cd02957, Phd_like, Phosducin (Phd)-like family; co	5e-08
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	1e-07
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	1e-06
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	4e-06
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	6e-06
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	1e-05
cd02989	113	cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like fam	1e-04
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	1e-04
cd02962	152	cd02962, TMX2, TMX2 family; composed of proteins s	2e-04
cd02988	192	cd02988, Phd_like_VIAF, Phosducin (Phd)-like famil	3e-04
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	4e-04
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	5e-04
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	5e-04
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	7e-04
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	0.001
cd02985	103	cd02985, TRX_CDSP32, TRX family, chloroplastic dro	0.001
cd02948	102	cd02948, TRX_NDPK, TRX domain, TRX and NDP-kinase	0.001
cd02987	175	cd02987, Phd_like_Phd, Phosducin (Phd)-like family	0.002
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	0.002
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	0.004

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score =  104 bits (261), Expect = 4e-29
 Identities = 38/87 (43%), Positives = 61/87 (70%), Gaps = 1/87 (1%)

Query: 16  GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
              K  V+HF+A W++ CK MN +F+E++K++ +  V+F    AE+LP++S  ++++AVP
Sbjct: 12  DASKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELPEISEKFEITAVP 70

Query: 76  TFVILKNLKPVDRVEGADPESLDKKLQ 102
           TFV  +N   VDRV GADP+ L KK++
Sbjct: 71  TFVFFRNGTIVDRVSGADPKELAKKVE 97

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|239326 cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

 Score = 99.5 bits (249), Expect = 2e-27
 Identities = 32/46 (69%), Positives = 41/46 (89%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193
           V + TFDIL+D+EVR+GLK YSNWPT+PQ+YVN EL+GG DI+KE+
Sbjct: 38  VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEM 83

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein in Arabidopsis thaliana, and PfGLP-1, a GRX-like protein from Plasmodium falciparum. Length = 90

>gnl|CDD|240250 PTZ00062, PTZ00062, glutaredoxin; Provisional

 Score = 91.8 bits (228), Expect = 4e-23
 Identities = 34/52 (65%), Positives = 43/52 (82%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
           V Y+T++I +D ++RE LK+YSNWPTYPQ+YVN ELIGG DIIKEL  +N L
Sbjct: 143 VKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELYESNSL 194

Length = 204

>gnl|CDD|188046 TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family

 Score = 86.4 bits (215), Expect = 3e-22
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193
           VP+   ++L+D E+R+G+K YSNWPT PQ+YV  E +GG DII E+
Sbjct: 42  VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEM 87

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation [Energy metabolism, Electron transport]. Length = 97

>gnl|CDD|223355 COG0278, COG0278, Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

 Score = 85.8 bits (213), Expect = 7e-22
 Identities = 28/48 (58%), Positives = 38/48 (79%)

Query: 146 QVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193
            VV +   D+LQD E+R+GLK YSNWPT+PQ+YVN E +GG DI++E+
Sbjct: 44  GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREM 91

Length = 105

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 78.4 bits (194), Expect = 3e-19
 Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 4/96 (4%)

Query: 8   EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
           EE + E     K  VV F+A W   CK +  + +E+++  +Y +V F +   ++ P+L+ 
Sbjct: 1   EEFE-ELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAE--EYPKVKFVKVDVDENPELAE 57

Query: 68  NYKVSAVPTFVILKNLKPVDRVEGADPES-LDKKLQ 102
            Y V ++PTF+  KN K VDRV GADP+  L++ L+
Sbjct: 58  EYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFLE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 71.0 bits (175), Expect = 1e-16
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193
           + ++  DIL+D E+RE LK  S WPT PQ+++N E IGG D +K L
Sbjct: 25  IEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  +V FYA W   CK +   +++++++ K   V FA+  A++ P L+  Y V   PT 
Sbjct: 18 DKPVLVDFYAPWCGPCKALAPEYEKLAQEYK-DDVKFAKVDADENPDLASEYGVRGFPTI 76

Query: 78 VILKNLKPVDRVEGADPES 96
             KN K V    GA  + 
Sbjct: 77 KFFKNGKKVSDYVGARTKD 95

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 63.1 bits (154), Expect = 3e-13
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 7   SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
               D      DK  +V F+A W   CK +  + +E++K+    +V F +   ++ P ++
Sbjct: 3   DANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKE-YEGKVKFVKLNVDENPDIA 61

Query: 67  LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQ 104
             Y + ++PT ++ KN K VDR  GA P++  K+L N+
Sbjct: 62  AKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINK 99

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 58.0 bits (140), Expect = 2e-11
 Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          ++  +V FYA+W   CK +   ++E SK  +Y+++VF +   ++L +++    ++++PTF
Sbjct: 18 NELVIVDFYAEWCGPCKRIAPFYEECSK--EYTKMVFVKVDVDELSEVAEKENITSMPTF 75

Query: 78 VILKNLKPVDRVEGADPESL 97
           + KN   VD + GA+ E+L
Sbjct: 76 KVFKNGSVVDTLLGANDEAL 95

Length = 98

>gnl|CDD|182759 PRK10824, PRK10824, glutaredoxin-4; Provisional

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 21/40 (52%), Positives = 32/40 (80%)

Query: 154 DILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193
           DILQ+ ++R  L  Y+NWPT+PQ++V+ EL+GG DI+ E+
Sbjct: 51  DILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90

Length = 115

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 54.0 bits (131), Expect = 2e-10
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI 184
           V ++  D+ +D E+RE LK  S WPT PQV+++ E I
Sbjct: 24  VKFEEIDVDEDPEIREELKELSGWPTVPQVFIDGEHI 60

Length = 60

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
          VV F+A  S   K +  L + ++++ +  Q V A+   +  P+++  + V A+PT  +  
Sbjct: 16 VVDFWAPRSPPSKELLPLLERLAEEYQ-GQFVLAKVNCDAQPQIAQQFGVQALPTVYLFA 74

Query: 82 NLKPVDRVEGADPE 95
            +PVD  +GA PE
Sbjct: 75 AGQPVDGFQGAQPE 88

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

 Score = 49.1 bits (118), Expect = 5e-08
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 20/114 (17%)

Query: 2   SVVQISEE--LD-VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
            V +IS +  L+ V K  K    VVHFY      CK +++  +E++   KY +  F +  
Sbjct: 5   EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAA--KYPETKFVKIN 62

Query: 59  AED--LPKLSLNY-KVSAVPTFVILKNLKPVDRV--------EGADPESLDKKL 101
           AE   L     NY  +  +PT ++ KN + +D +        +    E L+K L
Sbjct: 63  AEKAFLV----NYLDIKVLPTLLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 118 VPYDTFDILQDQEVREGLKIYSNWPTYPQVV 148
           V ++  D+ +D E+RE LK  S WPT PQV 
Sbjct: 24  VKFEEIDVDEDPEIREELKELSGWPTVPQVF 54

Length = 60

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           D   V+ F+A W   C++   +F++++ +    +V F +   E   +LS  +++ ++PT 
Sbjct: 52  DLPVVIDFWAPWCGPCRNFAPIFEDVAAERS-GKVRFVKVNTEAERELSARFRIRSIPTI 110

Query: 78  VILKNLKPVDRVEGADPES 96
           +I KN + VD + GA P++
Sbjct: 111 MIFKNGQVVDMLNGAVPKA 129

Length = 139

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 44.1 bits (103), Expect = 4e-06
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 2   SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
           S  ++          K K  +V F+A W   C+    L +E++++      V A  + ++
Sbjct: 16  SFEELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE 75

Query: 62  LPKLSLNYK--VSAVPTFVILKNLKPVDRVEGAD 93
            P L+  +   V ++PT ++ K+ K VDR+ G  
Sbjct: 76  NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK 109

Length = 127

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFAR--CIAEDLPKLSLNYKVSA 73
            K  +V FYA W   CK +   +++++K+ K   +VV A+  C A     L   Y V  
Sbjct: 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN--NDLCSEYGVRG 71

Query: 74 VPTFVILKN 82
           PT  +  N
Sbjct: 72 YPTIKLFPN 80

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 9   ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLN 68
           E +V +  ++   +V F+A W   CK +    ++++ + K  +   A+   +  P ++  
Sbjct: 34  EQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-GKFKLAKVNCDAEPMVAAQ 92

Query: 69  YKVSAVPTFVILKNLKPVDRVEGADPES 96
           + V ++PT    K+ +PVD  +GA PES
Sbjct: 93  FGVQSIPTVYAFKDGQPVDGFQGAQPES 120

Length = 304

>gnl|CDD|239287 cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 1  MSVVQISEELDV-EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
              ++S+E +  E     +  V HFY      CK M+   + ++K  K+ +  F +  A
Sbjct: 4  GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAK--KHLETKFIKVNA 61

Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEG 91
          E  P L     +  +PT ++ KN K VDR+ G
Sbjct: 62 EKAPFLVEKLNIKVLPTVILFKNGKTVDRIVG 93

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. Length = 113

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 13  EKYGKDKTAV-VHFYADWSDECKHMNTLFDEMSKQ--SKYSQVVFARCIAEDLPKLSLNY 69
           +K+  +   V V FYA W   CK +   + + +K    K S++V A   A +  +L+  +
Sbjct: 43  DKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEF 102

Query: 70  KVSAVPTFVILKNLKPVDRVEGADPESL 97
            V   PT        PV+   G   + +
Sbjct: 103 GVRGYPTIKFFNKGNPVNYSGGRTADGI 130

Length = 477

>gnl|CDD|239260 cd02962, TMX2, TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 13/102 (12%)

Query: 5   QISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK 64
            + EEL   +  K  T +V F+  WS EC +   +F E+S +   + + F +      P 
Sbjct: 37  TLEEEL---ERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN 93

Query: 65  LSLNYKVSA------VPTFVILKNLKPVDRVEGADPESLDKK 100
           ++  ++VS       +PT ++ +  K V R     P   D K
Sbjct: 94  VAEKFRVSTSPLSKQLPTIILFQGGKEVARR----PYYNDSK 131

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. Length = 152

>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 2   SVVQISEE---LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
            V +IS+     +V +  KD   VVH Y D    C+ +N    E+++  K+    F + I
Sbjct: 83  EVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELAR--KFPDTKFVKII 140

Query: 59  AED-LPKLSLNYKVSAVPTFVILKN 82
           +   +P    NY    +PT ++ +N
Sbjct: 141 STQCIP----NYPDKNLPTILVYRN 161

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 192

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI-AEDLPKLSLNYKVSAVPTFVIL 80
          +V FYA W   C+ +  +  E++  +K  +           L K    Y V  VPT V+ 
Sbjct: 1  LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVF 60

Query: 81 KN 82
            
Sbjct: 61 GP 62

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 16  GKDKTAVVHFYADWSDECKHMNTLFDEMSKQ-SKYSQVVFAR--CIAEDLPKLSLNYKVS 72
             +K  +V FYA W   CK++   +++++K+  K   +V A+    AE    L+  + VS
Sbjct: 11  LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEK--DLASRFGVS 68

Query: 73  AVPTFVILKN-LKPVDRVEGADPESLDKKLQNQA 105
             PT        KPVD   G D E++ + +  ++
Sbjct: 69  GFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEKS 102

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 8  EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL 67
          +  D +    D   +V F+A+W   CK +  + DE++ + +  ++  A+   +  P  + 
Sbjct: 11 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAP 69

Query: 68 NYKVSAVPTFVILKN 82
           Y +  +PT ++ KN
Sbjct: 70 KYGIRGIPTLLLFKN 84

Length = 109

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 16  GKDKTAV-VHFYADWSDECKHMNTLFDEMSKQSKYSQ-VVFARCIAEDLPK-LSLNYKVS 72
           G DK  V V FYA W   CK++   +++++        VV A+  A++  K L+  Y VS
Sbjct: 15  GDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVS 74

Query: 73  AVPTFVIL--KNLKPVDRVEGADPESL 97
             PT       + +PV    G D E L
Sbjct: 75  GFPTLKFFPKGSTEPVKYEGGRDLEDL 101

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 2  SVVQISEELDVEKYGKDKTAV-VHFYADWSDECKHMNTLF----DEMSKQSKYSQVVFA- 55
           VV +++E D  K+ K +  V V FYA W   CK M   F     E+ +  K    V A 
Sbjct: 1  DVVHLTDE-DFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKG---VLAA 56

Query: 56 -RCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEG 91
            C   +   L   Y V   PTF   +N K V++ EG
Sbjct: 57 VDCTKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEG 93

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|239283 cd02985, TRX_CDSP32, TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 8  EELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK-- 64
          EELD   K  K +  V+ F    S     +     ++S+    + VVF     ++     
Sbjct: 4  EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTM 61

Query: 65 -LSLNYKVSAVPTFVILKNLKPVDRVEGADPESL 97
           L    K+  VP F+  K+ + +   EG  P+ L
Sbjct: 62 ELCRREKIIEVPHFLFYKDGEKIHEEEGIGPDEL 95

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. Length = 103

>gnl|CDD|239246 cd02948, TRX_NDPK, TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VV  Y +W   CK + +LF ++  +     + FA   A+ +  L   Y+    PTF+  K
Sbjct: 21  VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLK-RYRGKCEPTFLFYK 79

Query: 82  NLKPVDRVEGADPESLDKKLQNQ 104
           N + V  + GA+   L+K +   
Sbjct: 80  NGELVAVIRGANAPLLNKTITEL 102

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which is also associated with microtubular structures. The other members of this group are hypothetical insect proteins containing a TRX domain and outer arm dynein light chains (14 and 16kDa) of Chlamydomonas reinhardtii. Using standard assays, the fusion proteins have shown no TRX enzymatic activity. Length = 102

>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 12  VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKV 71
           ++K GKD T VVH Y      C  +N+    ++  ++Y  V F +  A      S  +  
Sbjct: 77  IDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLA--AEYPAVKFCKIRASAT-GASDEFDT 133

Query: 72  SAVPTFVILKN 82
            A+P  ++ K 
Sbjct: 134 DALPALLVYKG 144

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 175

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN 82
          + FYA W   C+ +   ++E +  S    +  A+      P LS  + V+A+PT    K+
Sbjct: 21 IEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKD 80

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 159 QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIP 201
            E+++ L+  +   T P V++  + IGG D +  L  + KL+ 
Sbjct: 39  SEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLVK 81

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
PTZ00062	204	glutaredoxin; Provisional	100.0
KOG0911|consensus	227		100.0
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	99.94
KOG0910|consensus	150		99.91
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.91
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.9
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.9
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.89
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.88
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.88
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.88
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.88
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.87
PHA02278	103	thioredoxin-like protein	99.87
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.87
KOG0907|consensus	106		99.87
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.87
PRK09381	109	trxA thioredoxin; Provisional	99.86
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.86
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.86
PRK10996	139	thioredoxin 2; Provisional	99.86
KOG0191|consensus	383		99.85
KOG0908|consensus	288		99.85
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.85
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.85
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.85
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.85
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.85
PTZ00051	98	thioredoxin; Provisional	99.85
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.85
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.84
KOG0190|consensus	493		99.84
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.84
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.83
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.83
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.83
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.83
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.82
PRK10824	115	glutaredoxin-4; Provisional	99.82
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.82
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.81
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.81
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.81
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.8
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.8
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.8
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.8
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.79
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.79
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.78
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.78
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.77
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.77
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.75
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.74
PTZ00102	477	disulphide isomerase; Provisional	99.74
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.74
PLN02309	457	5'-adenylylsulfate reductase	99.73
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.73
KOG4277|consensus	468		99.72
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.71
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.71
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.69
KOG0912|consensus	375		99.69
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.68
KOG0190|consensus	493		99.68
PTZ00102	477	disulphide isomerase; Provisional	99.67
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.67
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.67
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.63
KOG0191|consensus	383		99.62
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.58
PHA02125	75	thioredoxin-like protein	99.57
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.55
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.53
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.52
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.51
KOG1731|consensus	606		99.5
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.5
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	99.5
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	99.5
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.49
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.47
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.47
PHA03050	108	glutaredoxin; Provisional	99.46
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.45
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.44
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.43
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.41
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.4
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.39
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.39
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.39
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.38
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.38
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.35
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.34
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.34
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.34
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.34
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.34
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.33
PRK10638	83	glutaredoxin 3; Provisional	99.31
KOG1752|consensus	104		99.3
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.3
PRK11200	85	grxA glutaredoxin 1; Provisional	99.29
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.24
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.23
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.2
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.15
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.14
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.14
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.14
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.13
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.13
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.11
PTZ00056	199	glutathione peroxidase; Provisional	99.09
KOG0914|consensus	265		99.08
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.07
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.06
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.05
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.03
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	99.03
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.98
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.97
smart00594	122	UAS UAS domain.	98.97
PLN02412	167	probable glutathione peroxidase	98.96
KOG1672|consensus	211		98.96
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.96
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	98.94
KOG2824|consensus	281		98.91
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.91
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.85
KOG0913|consensus	248		98.85
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.83
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.81
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.81
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.81
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	98.79
KOG2501|consensus	157		98.77
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.75
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	98.74
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.73
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	98.69
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.67
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.65
PF13728	215	TraF: F plasmid transfer operon protein	98.6
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	98.55
PTZ00256	183	glutathione peroxidase; Provisional	98.55
KOG3414|consensus	142		98.53
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.53
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.53
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.53
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.53
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.52
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.51
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.51
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.49
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.48
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.48
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.47
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.46
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.38
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	98.38
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.37
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.37
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.35
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	98.34
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.32
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.31
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.29
PRK13190	202	putative peroxiredoxin; Provisional	98.28
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.27
PRK15000	200	peroxidase; Provisional	98.25
KOG3425|consensus	128		98.24
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.23
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.19
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	98.19
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	98.18
KOG0911|consensus	227		98.17
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.15
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.13
PRK10329	81	glutaredoxin-like protein; Provisional	98.13
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	98.08
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.07
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.07
KOG3171|consensus	273		98.06
PRK13189	222	peroxiredoxin; Provisional	98.04
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.03
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.03
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.02
PRK13599	215	putative peroxiredoxin; Provisional	98.01
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	98.0
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.0
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.97
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.96
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	97.91
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.91
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.89
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.89
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	97.87
PRK13191	215	putative peroxiredoxin; Provisional	97.86
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	97.85
KOG2603|consensus	331		97.83
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.82
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.82
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.8
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.79
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	97.78
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.75
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	97.75
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.73
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.73
KOG4277|consensus	468		97.73
PHA03050	108	glutaredoxin; Provisional	97.72
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.71
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.7
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.7
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	97.69
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.69
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.66
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	97.64
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.6
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.6
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.6
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	97.57
KOG0910|consensus	150		97.55
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.54
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.53
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	97.52
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	97.5
PHA02278	103	thioredoxin-like protein	97.48
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	97.47
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	97.45
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	97.43
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	97.41
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	97.29
PRK10638	83	glutaredoxin 3; Provisional	97.22
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	97.22
KOG0912|consensus	375		97.19
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	97.17
KOG3170|consensus	240		97.15
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	97.14
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	97.12
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.1
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	97.09
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.08
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.04
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	97.01
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	96.98
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	96.96
PRK09381	109	trxA thioredoxin; Provisional	96.95
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	96.95
PTZ00051	98	thioredoxin; Provisional	96.93
PRK10329	81	glutaredoxin-like protein; Provisional	96.9
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	96.87
KOG0907|consensus	106		96.82
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	96.82
PRK10996	139	thioredoxin 2; Provisional	96.8
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	96.77
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	96.76
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	96.72
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	96.54
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	96.52
PRK10824	115	glutaredoxin-4; Provisional	96.46
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	96.44
KOG1752|consensus	104		96.35
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	96.33
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	96.2
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.17
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	96.16
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	96.15
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	96.14
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	96.14
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	96.11
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	96.11
PTZ00062	204	glutaredoxin; Provisional	96.07
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	95.99
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	95.98
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	95.96
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	95.95
KOG4023|consensus	108		95.81
cd02978	72	KaiB_like KaiB-like family; composed of the circad	95.73
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	95.72
PLN02309	457	5'-adenylylsulfate reductase	95.65
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	95.32
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	95.23
KOG2640|consensus	319		95.2
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	95.19
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	94.95
cd02947	93	TRX_family TRX family; composed of two groups: Gro	94.64
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	94.62
KOG0914|consensus	265		94.51
COG1331	667	Highly conserved protein containing a thioredoxin	94.48
PRK09301	103	circadian clock protein KaiB; Provisional	94.46
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	94.4
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	94.17
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	94.04
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	94.03
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	93.68
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	93.64
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	93.53
KOG1731|consensus	606		93.46
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	93.34
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	93.09
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	92.85
PHA02125	75	thioredoxin-like protein	92.71
KOG0908|consensus	288		92.63
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	92.62
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	92.46
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	92.45
PHA03075	123	glutaredoxin-like protein; Provisional	92.35
PF07689	82	KaiB: KaiB domain; InterPro: IPR011649 The cyanoba	92.13
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	92.08
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	92.05
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	91.63
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	91.2
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	90.99
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	90.88
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	90.54
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	88.87
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	88.77
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	88.01
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	87.47
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	87.39
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	86.39
KOG2507|consensus	506		85.89
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	85.71
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	85.6
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	84.94
COG3019	149	Predicted metal-binding protein [General function	84.77
KOG0913|consensus	248		84.58
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	84.57
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	84.0
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	83.22
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	82.94
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	82.87
PRK12559	131	transcriptional regulator Spx; Provisional	82.44
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	81.9
PF09822	271	ABC_transp_aux: ABC-type uncharacterized transport	81.75
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	81.56
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	81.42
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	81.29
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	80.88
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	80.61
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	80.03

>PTZ00062 glutaredoxin; Provisional

Probab=100.00  E-value=3.7e-38  Score=245.30  Aligned_cols=171  Identities=28%  Similarity=0.429  Sum_probs=141.3

Q ss_pred             chhhhhhcC-CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc
Q psy15246          9 ELDVEKYGK-DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD   87 (213)
Q Consensus         9 ~~~~~~~~~-~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~   87 (213)
                      +.....+++ .+.++++|+|+||++|+++.|.+.+++++++  ++.|+.||++        |+|.++|||++|++|+.+.
T Consensus         7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~   76 (204)
T PTZ00062          7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA--------DANNEYGVFEFYQNSQLIN   76 (204)
T ss_pred             HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc--------cCcccceEEEEEECCEEEe
Confidence            334444444 4889999999999999999999999999998  7999999987        9999999999999999999


Q ss_pred             cccCCCchhHHHHHHHHhcc----------------------CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCC
Q psy15246         88 RVEGADPESLDKKLQNQAST----------------------MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYP  145 (213)
Q Consensus        88 ~~~g~~~~~l~~~i~~~~~~----------------------~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~  145 (213)
                      ++.|.++.+|..+++++.+.                      +||+|.. +.|++..       .++.+|....      
T Consensus        77 r~~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~-p~C~~C~-------~~k~~L~~~~------  142 (204)
T PTZ00062         77 SLEGCNTSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTF-PFCRFSN-------AVVNMLNSSG------  142 (204)
T ss_pred             eeeCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCC-CCChhHH-------HHHHHHHHcC------
Confidence            99999988999888887542                      4444332 2333333       1112222221      


Q ss_pred             CCCCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        146 QVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       146 ~~v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                        ++|..+|+..+++.++.|+++++|||+|||||+|++|||+|++++|+++|+|.++|..
T Consensus       143 --i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~~G~L~~~l~~  200 (204)
T PTZ00062        143 --VKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELYESNSLRKVIPD  200 (204)
T ss_pred             --CCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHcCChhhhhhh
Confidence              8999999999999999999999999999999999999999999999999999999854

>KOG0911|consensus

Probab=100.00  E-value=3.7e-36  Score=231.03  Aligned_cols=186  Identities=38%  Similarity=0.616  Sum_probs=152.6

Q ss_pred             CceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         1 M~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |+|+++.....+ ...+.+..+++||++||..|+++...++.+++..+  ++.|+++++++.++++..+.+.+.|++.++
T Consensus         1 ~~v~~i~~~~~f-~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~~eis~~~~v~~vp~~~~~   77 (227)
T KOG0911|consen    1 MTVQFIVFQEQF-LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEFPEISNLIAVEAVPYFVFF   77 (227)
T ss_pred             CCceeehhHHHH-HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhhhHHHHHHHHhcCceeeee
Confidence            788999885555 55689999999999999999999999999999996  899999999999999999999999999999


Q ss_pred             eCCCCcccccCCCchhHHHHHHHHhcc----------------------------------------CCCCCCcccccCC
Q psy15246         81 KNLKPVDRVEGADPESLDKKLQNQAST----------------------------------------MKNQPSNITHVPY  120 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~~l~~~i~~~~~~----------------------------------------~kg~p~~~~~~~~  120 (213)
                      ..|+.+.+..|.++..+...+......                                        |||+|+. +.|.|
T Consensus        78 ~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~-P~CGF  156 (227)
T KOG0911|consen   78 FLGEKVDRLSGADPPFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEE-PKCGF  156 (227)
T ss_pred             ecchhhhhhhccCcHHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCc-ccccc
Confidence            999888888877766444444433221                                        4555544 34444


Q ss_pred             CcccccchhhhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCch
Q psy15246        121 DTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLI  200 (213)
Q Consensus       121 ~~f~~l~~~~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~  200 (213)
                      +.       .+...|...+        ++|+.+|+..|+++|+++|.||.||||||+||+|+|+||+|+++++|++|+|.
T Consensus       157 S~-------~~v~iL~~~n--------V~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~geL~  221 (227)
T KOG0911|consen  157 SR-------QLVGILQSHN--------VNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEKGELV  221 (227)
T ss_pred             cH-------HHHHHHHHcC--------CCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhcccHH
Confidence            33       1112222222        89999999999999999999999999999999999999999999999999999


Q ss_pred             hhccC
Q psy15246        201 PTLDQ  205 (213)
Q Consensus       201 ~~~~~  205 (213)
                      ..|+.
T Consensus       222 ~~l~~  226 (227)
T KOG0911|consen  222 YTLKE  226 (227)
T ss_pred             HHhhc
Confidence            98864

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4e-27  Score=158.34  Aligned_cols=95  Identities=37%  Similarity=0.677  Sum_probs=80.5

Q ss_pred             hHHHHHHHHhcc------CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhc
Q psy15246         96 SLDKKLQNQAST------MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYS  169 (213)
Q Consensus        96 ~l~~~i~~~~~~------~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~  169 (213)
                      ++.+.|++.+++      |||+|.. +.|.|+.       .+.+.|..+..       ++|+++|+.+|+++|+++++|+
T Consensus         3 ~i~~~I~~~i~~n~VvLFMKGtp~~-P~CGFS~-------~~vqiL~~~g~-------v~~~~vnVL~d~eiR~~lk~~s   67 (105)
T COG0278           3 EILDRIQKQIKENPVVLFMKGTPEF-PQCGFSA-------QAVQILSACGV-------VDFAYVDVLQDPEIRQGLKEYS   67 (105)
T ss_pred             hHHHHHHHHhhcCceEEEecCCCCC-CCCCccH-------HHHHHHHHcCC-------cceeEEeeccCHHHHhccHhhc
Confidence            355667776665      9999997 7788877       33355554431       6899999999999999999999


Q ss_pred             CCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        170 NWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       170 ~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      +|||+||+||+|+||||+|+++++.++|+|.++|+.
T Consensus        68 ~WPT~PQLyi~GEfvGG~DIv~Em~q~GELq~~l~~  103 (105)
T COG0278          68 NWPTFPQLYVNGEFVGGCDIVREMYQSGELQTLLKE  103 (105)
T ss_pred             CCCCCceeeECCEEeccHHHHHHHHHcchHHHHHHh
Confidence            999999999999999999999999999999999865

>KOG0910|consensus

Probab=99.91  E-value=2e-24  Score=157.53  Aligned_cols=97  Identities=28%  Similarity=0.516  Sum_probs=90.9

Q ss_pred             chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccc
Q psy15246          9 ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDR   88 (213)
Q Consensus         9 ~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~   88 (213)
                      +++..+++++.+|+|.|||+||++|+.+.|.+++++.++.+ .+.|++||.|++.+++.+|+|.++||+++|+||+...+
T Consensus        52 ~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~d~  130 (150)
T KOG0910|consen   52 EFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKVDR  130 (150)
T ss_pred             HHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccccchHhhcceeeeeEEEEEECCEEeee
Confidence            56667789999999999999999999999999999999998 89999999999999999999999999999999999999


Q ss_pred             ccCCCch-hHHHHHHHHhc
Q psy15246         89 VEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        89 ~~g~~~~-~l~~~i~~~~~  106 (213)
                      ..|..+. .|.++|+++++
T Consensus       131 ~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  131 FVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             ecccCCHHHHHHHHHHHhc
Confidence            9998777 69999998864

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.91  E-value=8.4e-24  Score=150.72  Aligned_cols=98  Identities=12%  Similarity=0.120  Sum_probs=85.5

Q ss_pred             ceEEeCCchhhhh---hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH-HhCCCccccEE
Q psy15246          2 SVVQISEELDVEK---YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS-LNYKVSAVPTF   77 (213)
Q Consensus         2 ~v~~l~~~~~~~~---~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~-~~~~I~~~Pti   77 (213)
                      .|++++++++.+.   +.++++++|.||||||++|+.+.|.|+++++.+++ .+.|++|||+++.++| ++|+|.++||+
T Consensus        10 ~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~~~l~~~~~~I~~~PTl   88 (113)
T cd03006          10 PVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWPQGKCRKQKHFFYFPVI   88 (113)
T ss_pred             CeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCChHHHHHhcCCcccCEE
Confidence            3788999666654   58999999999999999999999999999999987 6999999999999999 58999999999


Q ss_pred             EEEeCCCCcccccCCCch-hHHHH
Q psy15246         78 VILKNLKPVDRVEGADPE-SLDKK  100 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~~-~l~~~  100 (213)
                      ++|++|+...++.|.... .|..|
T Consensus        89 ~lf~~g~~~~~y~G~~~~~~i~~~  112 (113)
T cd03006          89 HLYYRSRGPIEYKGPMRAPYMEKF  112 (113)
T ss_pred             EEEECCccceEEeCCCCHHHHHhh
Confidence            999999876667776554 67665

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.90  E-value=3.6e-23  Score=145.00  Aligned_cols=97  Identities=15%  Similarity=0.195  Sum_probs=87.0

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +++++...+...+..+++++|.|||+||++|+++.|.|+++++.+++ .+.|++|||++++++|++++|+++||+++|++
T Consensus         3 ~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   81 (101)
T cd03003           3 IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS   81 (101)
T ss_pred             eEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence            67888876777778889999999999999999999999999999997 79999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHH
Q psy15246         83 LKPVDRVEGADPE-SLDKK  100 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~  100 (213)
                      |+...++.|.... +|.+|
T Consensus        82 g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          82 GMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             CCCcccCCCCCCHHHHHhh
Confidence            9888888886655 56655

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.90  E-value=7.6e-23  Score=143.10  Aligned_cols=101  Identities=32%  Similarity=0.523  Sum_probs=92.4

Q ss_pred             eEEeCCchhhhhhcC-CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDVEKYGK-DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~~~~~~-~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      |+.+|++.+...+.+ +++++|.||++||++|+.+.|.|+++++.+++ ++.|+.||++++++++++|+|.++||+++|+
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   79 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFK   79 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence            567888777777765 99999999999999999999999999999998 8999999999999999999999999999999


Q ss_pred             CCCCcccccCCCc-hhHHHHHHHH
Q psy15246         82 NLKPVDRVEGADP-ESLDKKLQNQ  104 (213)
Q Consensus        82 ~g~~~~~~~g~~~-~~l~~~i~~~  104 (213)
                      +|+...++.|... ++|.+||+++
T Consensus        80 ~g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   80 NGKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCHHHHHHHHHcC
Confidence            9998888999855 4899999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.89  E-value=1.7e-22  Score=142.26  Aligned_cols=99  Identities=18%  Similarity=0.267  Sum_probs=85.6

Q ss_pred             ceEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      .+++++.+.+.+. ..++++++|.|||+||++|+++.|.|+++++.+.+ .+.|++||+++++++|++|+|+++||+++|
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~   80 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLY   80 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence            3678888555554 46678999999999999999999999999999986 799999999999999999999999999999


Q ss_pred             eCC-CCcccccCCCc--hhHHHHH
Q psy15246         81 KNL-KPVDRVEGADP--ESLDKKL  101 (213)
Q Consensus        81 ~~g-~~~~~~~g~~~--~~l~~~i  101 (213)
                      ++| +...++.|...  ++|.+||
T Consensus        81 ~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          81 PGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             cCCCCCceEccCCCCCHHHHHhhC
Confidence            988 88888888654  3677664

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.88  E-value=4.7e-22  Score=139.65  Aligned_cols=97  Identities=26%  Similarity=0.397  Sum_probs=86.2

Q ss_pred             eCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCC
Q psy15246          6 ISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLK   84 (213)
Q Consensus         6 l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~   84 (213)
                      +++ +.....++++++++|+|||+||++|+.+.|.++++++.+++..+.|+.+|++ +.+++++|+|+++||+++|++|+
T Consensus         4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~   82 (102)
T cd02948           4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE   82 (102)
T ss_pred             ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence            444 5555667889999999999999999999999999999998535899999999 78999999999999999999999


Q ss_pred             CcccccCCCchhHHHHHHH
Q psy15246         85 PVDRVEGADPESLDKKLQN  103 (213)
Q Consensus        85 ~~~~~~g~~~~~l~~~i~~  103 (213)
                      .+.+..|.+...|.++|++
T Consensus        83 ~~~~~~G~~~~~~~~~i~~  101 (102)
T cd02948          83 LVAVIRGANAPLLNKTITE  101 (102)
T ss_pred             EEEEEecCChHHHHHHHhh
Confidence            9999999888788888865

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.5e-22  Score=161.15  Aligned_cols=103  Identities=23%  Similarity=0.517  Sum_probs=94.3

Q ss_pred             eEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      ++++|+ ++..+++  +...+|+|+||+|||++|+++.|.+++++.+++| .+.+++||||+++.++.+|||+++||++.
T Consensus        25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p~vAaqfgiqsIPtV~a  103 (304)
T COG3118          25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEPMVAAQFGVQSIPTVYA  103 (304)
T ss_pred             ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence            567888 4555554  5566999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         80 LKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |++|+++..+.|..++ .|++|+.+++.
T Consensus       104 f~dGqpVdgF~G~qPesqlr~~ld~~~~  131 (304)
T COG3118         104 FKDGQPVDGFQGAQPESQLRQFLDKVLP  131 (304)
T ss_pred             eeCCcCccccCCCCcHHHHHHHHHHhcC
Confidence            9999999999999999 79999999974

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.88  E-value=2.5e-22  Score=144.17  Aligned_cols=101  Identities=16%  Similarity=0.141  Sum_probs=87.1

Q ss_pred             eEEeCCchhhhh-hcCCCeEEEEEEcCCCHH--HH--hHHHHHHHHHHHc--CCCcEEEEEEeCCCchhHHHhCCCcccc
Q psy15246          3 VVQISEELDVEK-YGKDKTAVVHFYADWSDE--CK--HMNTLFDEMSKQS--KYSQVVFARCIAEDLPKLSLNYKVSAVP   75 (213)
Q Consensus         3 v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~--C~--~~~~~~~~l~~~~--~~~~v~~~~vd~~~~~~l~~~~~I~~~P   75 (213)
                      |+++|++++.+. .+++.++++.||++||++  |+  .+.|.++++++++  .+ ++.|++||++++++++++|+|+++|
T Consensus        11 v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~~~La~~~~I~~iP   89 (120)
T cd03065          11 VIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKDAKVAKKLGLDEED   89 (120)
T ss_pred             eeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCCHHHHHHcCCcccc
Confidence            678888555554 577778899999999976  99  8899999999887  65 7999999999999999999999999


Q ss_pred             EEEEEeCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         76 TFVILKNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        76 ti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      |+++|++|+.+. +.|..+. .|.+||++.+
T Consensus        90 Tl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          90 SIYVFKDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             EEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            999999999887 7776665 7999998864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.88  E-value=5.4e-22  Score=140.68  Aligned_cols=100  Identities=18%  Similarity=0.356  Sum_probs=84.9

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-----CcEEEEEEeCCCchhHHHhCCCccccE
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-----SQVVFARCIAEDLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-----~~v~~~~vd~~~~~~l~~~~~I~~~Pt   76 (213)
                      .|++++++.+.+.+..+++++|.|||+||++|+++.|.|+++++.+++     ..+.+++|||+++++++++|+|+++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt   81 (108)
T cd02996           2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT   81 (108)
T ss_pred             ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence            378888877777888899999999999999999999999999987532     158999999999999999999999999


Q ss_pred             EEEEeCCCC-cccccCCCch-hHHHHH
Q psy15246         77 FVILKNLKP-VDRVEGADPE-SLDKKL  101 (213)
Q Consensus        77 i~~~~~g~~-~~~~~g~~~~-~l~~~i  101 (213)
                      +++|++|+. ...+.|.... +|.+||
T Consensus        82 l~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          82 LKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            999999983 4556675554 677764

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.87  E-value=4.6e-22  Score=140.90  Aligned_cols=77  Identities=18%  Similarity=0.366  Sum_probs=71.9

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCC
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGAD   93 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~   93 (213)
                      +++++++|.|||+||++|+.|.|.++++++++++ .+.|++||++++++++++|+|+++||+++|++|+.+.+..|.-
T Consensus        12 ~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~   88 (114)
T cd02954          12 EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTG   88 (114)
T ss_pred             cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCC
Confidence            3688999999999999999999999999999996 6899999999999999999999999999999999998887743

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PHA02278 thioredoxin-like protein

Probab=99.87  E-value=5.7e-22  Score=139.06  Aligned_cols=90  Identities=11%  Similarity=0.123  Sum_probs=77.6

Q ss_pred             chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc----hhHHHhCCCccccEEEEEeCCC
Q psy15246          9 ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL----PKLSLNYKVSAVPTFVILKNLK   84 (213)
Q Consensus         9 ~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~----~~l~~~~~I~~~Pti~~~~~g~   84 (213)
                      +.+.+.++++++++|+|||+||++|+.+.|.++++++++.+ ++.|+++|++.+    ++++++|+|.++||+++|++|+
T Consensus         5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~   83 (103)
T PHA02278          5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ   83 (103)
T ss_pred             HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence            34455568899999999999999999999999999988654 578999999986    6899999999999999999999


Q ss_pred             CcccccCCCch-hHHH
Q psy15246         85 PVDRVEGADPE-SLDK   99 (213)
Q Consensus        85 ~~~~~~g~~~~-~l~~   99 (213)
                      .+.+..|..+. .|.+
T Consensus        84 ~v~~~~G~~~~~~l~~   99 (103)
T PHA02278         84 LVKKYEDQVTPMQLQE   99 (103)
T ss_pred             EEEEEeCCCCHHHHHh
Confidence            99999996655 4544

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.87  E-value=9.6e-22  Score=138.32  Aligned_cols=86  Identities=21%  Similarity=0.319  Sum_probs=78.8

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch---hHHHhCCCccccEEEEEeCCCCcccccCC
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP---KLSLNYKVSAVPTFVILKNLKPVDRVEGA   92 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~---~l~~~~~I~~~Pti~~~~~g~~~~~~~g~   92 (213)
                      ..+++++|.|||+||++|+.+.|.+++++++++  ++.|+.||++++.   +++++|+|+++||+++|++|+.+.++.|.
T Consensus        13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~   90 (103)
T cd02985          13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEGI   90 (103)
T ss_pred             cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCC
Confidence            348999999999999999999999999999995  7999999999874   89999999999999999999999999999


Q ss_pred             CchhHHHHHHH
Q psy15246         93 DPESLDKKLQN  103 (213)
Q Consensus        93 ~~~~l~~~i~~  103 (213)
                      .+.+|.+.+..
T Consensus        91 ~~~~l~~~~~~  101 (103)
T cd02985          91 GPDELIGDVLY  101 (103)
T ss_pred             CHHHHHHHHHh
Confidence            98888877654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0907|consensus

Probab=99.87  E-value=1e-21  Score=138.07  Aligned_cols=87  Identities=34%  Similarity=0.656  Sum_probs=81.5

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE   95 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~   95 (213)
                      ..+++++|+|||+||++|+.+.|.+++|+.+|+  ++.|++||+++..+++++++|+++|||+++++|+.+.+..|.+..
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~--~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~   96 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP--DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA   96 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC--CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence            446999999999999999999999999999999  699999999999999999999999999999999999999999998


Q ss_pred             hHHHHHHHH
Q psy15246         96 SLDKKLQNQ  104 (213)
Q Consensus        96 ~l~~~i~~~  104 (213)
                      ++++.+.++
T Consensus        97 ~l~~~i~~~  105 (106)
T KOG0907|consen   97 ELEKKIAKH  105 (106)
T ss_pred             HHHHHHHhc
Confidence            888877654

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.87  E-value=2.1e-21  Score=135.85  Aligned_cols=99  Identities=21%  Similarity=0.322  Sum_probs=83.6

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      .|++++.+.+.+++. +. ++|.|||+||++|+++.|.|+++++.+++.++.++++|+++++.++++|+|+++||+++++
T Consensus         2 ~v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~   79 (101)
T cd02994           2 NVVELTDSNWTLVLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK   79 (101)
T ss_pred             ceEEcChhhHHHHhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence            378888876666664 33 7899999999999999999999999877546999999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHH
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQN  103 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~  103 (213)
                      +|+. .++.|.... +|.++|++
T Consensus        80 ~g~~-~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          80 DGVF-RRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             CCCE-EEecCCCCHHHHHHHHhC
Confidence            9974 566676555 78888753

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.86  E-value=3.5e-21  Score=136.62  Aligned_cols=102  Identities=20%  Similarity=0.421  Sum_probs=90.7

Q ss_pred             eEEeCCchhh-hhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDV-EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~-~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      |++++.+.+. +++..+++++|+||++||++|+.+.|.++++++.+++ ++.++.+|++.++.++++|+|+++||+++|+
T Consensus         5 v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   83 (109)
T PRK09381          5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK   83 (109)
T ss_pred             ceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCcCCEEEEEe
Confidence            6778775444 4567799999999999999999999999999999987 7999999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHHHh
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      +|+.+.+..|.... +|.++|+..+
T Consensus        84 ~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         84 NGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             CCeEEEEecCCCCHHHHHHHHHHhc
Confidence            99988888887655 7999998875

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.86  E-value=1.3e-21  Score=139.47  Aligned_cols=88  Identities=16%  Similarity=0.201  Sum_probs=80.1

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE   95 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~   95 (213)
                      ..+++++|.||||||++|+.+.|.|+++++.+++.++.+++||+++++.++++++|+++||+++|++|+.+.+..|....
T Consensus        22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~  101 (111)
T cd02963          22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTK  101 (111)
T ss_pred             cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCH
Confidence            36899999999999999999999999999999854699999999999999999999999999999999988888886654


Q ss_pred             -hHHHHHHH
Q psy15246         96 -SLDKKLQN  103 (213)
Q Consensus        96 -~l~~~i~~  103 (213)
                       +|.++|++
T Consensus       102 ~~l~~~i~~  110 (111)
T cd02963         102 QHVVDFVRK  110 (111)
T ss_pred             HHHHHHHhc
Confidence             78888875

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.86  E-value=3.4e-21  Score=133.57  Aligned_cols=89  Identities=27%  Similarity=0.441  Sum_probs=79.3

Q ss_pred             hhhhcC-CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccccc
Q psy15246         12 VEKYGK-DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVE   90 (213)
Q Consensus        12 ~~~~~~-~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~   90 (213)
                      ..+..+ +++++|+|||+||++|+++.|.++++++.+++ .+.++.||++++++++++|+|.++||+++|++|+.+.++.
T Consensus         5 ~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~   83 (96)
T cd02956           5 QVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQ   83 (96)
T ss_pred             HHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeec
Confidence            334334 78999999999999999999999999999987 7999999999999999999999999999999999888888


Q ss_pred             CCCch-hHHHHH
Q psy15246         91 GADPE-SLDKKL  101 (213)
Q Consensus        91 g~~~~-~l~~~i  101 (213)
                      |.... +|.++|
T Consensus        84 g~~~~~~l~~~l   95 (96)
T cd02956          84 GAQPEEQLRQML   95 (96)
T ss_pred             CCCCHHHHHHHh
Confidence            87655 688776

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PRK10996 thioredoxin 2; Provisional

Probab=99.86  E-value=6.9e-21  Score=140.99  Aligned_cols=101  Identities=26%  Similarity=0.512  Sum_probs=91.4

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +++++.....+.++++++++|.|||+||++|+++.|.++++++++.+ ++.++++|++++++++++|+|+++||+++|++
T Consensus        37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~  115 (139)
T PRK10996         37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFKN  115 (139)
T ss_pred             CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEEC
Confidence            56677766677788899999999999999999999999999999886 79999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHH
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      |+.+.++.|.... .|.++++++
T Consensus       116 G~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        116 GQVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             CEEEEEEcCCCCHHHHHHHHHHh
Confidence            9999888887776 699998875

>KOG0191|consensus

Probab=99.85  E-value=1.6e-21  Score=166.98  Aligned_cols=172  Identities=21%  Similarity=0.378  Sum_probs=134.3

Q ss_pred             chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC-CCcc
Q psy15246          9 ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL-KPVD   87 (213)
Q Consensus         9 ~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g-~~~~   87 (213)
                      .+.......++.++|.||+|||++|+.+.|.|++++..+.+ .+.++.|||+.+.++|++|+|+++||+.+|..| +.+.
T Consensus        38 ~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~  116 (383)
T KOG0191|consen   38 SFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPID  116 (383)
T ss_pred             ccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceee
Confidence            44555568899999999999999999999999999999997 799999999999999999999999999999998 4455


Q ss_pred             cccCCCchhHHHHHHHHhcc--CCCCCCcccccCCCccccc-chhhhhhhheeccCC--------CCCCCC---------
Q psy15246         88 RVEGADPESLDKKLQNQAST--MKNQPSNITHVPYDTFDIL-QDQEVREGLKIYSNW--------PTYPQV---------  147 (213)
Q Consensus        88 ~~~g~~~~~l~~~i~~~~~~--~kg~p~~~~~~~~~~f~~l-~~~~~~~~v~~~apW--------P~~~~~---------  147 (213)
                      +....+...+..++...+..  ..-.+..+..++..+|+.+ .+....+++.||+||        |+|.++         
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~  196 (383)
T KOG0191|consen  117 YSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKEN  196 (383)
T ss_pred             ccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcc
Confidence            44444445788888888765  1111222455666777643 344556999999999        555444         


Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeE
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTEL  183 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~  183 (213)
                      +.++.+|++.+...+..+. ..++||+ .+|-+|..
T Consensus       197 v~~~~~d~~~~~~~~~~~~-v~~~Pt~-~~f~~~~~  230 (383)
T KOG0191|consen  197 VELGKIDATVHKSLASRLE-VRGYPTL-KLFPPGEE  230 (383)
T ss_pred             eEEEeeccchHHHHhhhhc-ccCCceE-EEecCCCc
Confidence            6678888887777777777 7889999 88877655

>KOG0908|consensus

Probab=99.85  E-value=2.3e-21  Score=151.20  Aligned_cols=105  Identities=28%  Similarity=0.546  Sum_probs=96.3

Q ss_pred             CceEEeCCchhhh-hh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          1 MSVVQISEELDVE-KY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         1 M~v~~l~~~~~~~-~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      |+|+.++++..+. .+  +..+.++|.|+|+||++|++..|.|+.++.+|+  +..|++||+++...++..+||.+.|||
T Consensus         1 m~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~c~~taa~~gV~amPTF   78 (288)
T KOG0908|consen    1 MPVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDECRGTAATNGVNAMPTF   78 (288)
T ss_pred             CCeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHHhhchhhhcCcccCceE
Confidence            9999999844333 34  556799999999999999999999999999999  799999999999999999999999999


Q ss_pred             EEEeCCCCcccccCCCchhHHHHHHHHhcc
Q psy15246         78 VILKNLKPVDRVEGADPESLDKKLQNQAST  107 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~  107 (213)
                      ++|+||..+.++.|.+...|++.|.+++..
T Consensus        79 iff~ng~kid~~qGAd~~gLe~kv~~~~st  108 (288)
T KOG0908|consen   79 IFFRNGVKIDQIQGADASGLEEKVAKYAST  108 (288)
T ss_pred             EEEecCeEeeeecCCCHHHHHHHHHHHhcc
Confidence            999999999999999999999999999865

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.85  E-value=9.3e-21  Score=134.26  Aligned_cols=99  Identities=20%  Similarity=0.347  Sum_probs=84.1

Q ss_pred             ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCccccEEE
Q psy15246          2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--LPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~   78 (213)
                      +|+++++..+.+.+ +++++++|.|||+||++|+++.|.|+++++.+.+ .+.++.+|++.  +.+++++|+|+++||++
T Consensus         1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~   79 (109)
T cd03002           1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK   79 (109)
T ss_pred             CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence            47889886666655 6677899999999999999999999999999986 79999999998  88999999999999999


Q ss_pred             EEeCCC-----CcccccCCCch-hHHHHH
Q psy15246         79 ILKNLK-----PVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        79 ~~~~g~-----~~~~~~g~~~~-~l~~~i  101 (213)
                      +|++|+     ....+.|.... +|.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHh
Confidence            999885     34556665554 688876

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.85  E-value=4e-21  Score=134.41  Aligned_cols=83  Identities=23%  Similarity=0.343  Sum_probs=74.8

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-CchhHHHhCCCccccEEEEEeCCCCcccccCCCc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP   94 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~   94 (213)
                      .++++++|.|||+||++|+++.|.|+++++.++  ++.++.||.+ ++++++++|+|.++||+++|++| ...++.|...
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~   92 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRT   92 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCC
Confidence            679999999999999999999999999999998  6889999999 89999999999999999999999 6677788666


Q ss_pred             h-hHHHHH
Q psy15246         95 E-SLDKKL  101 (213)
Q Consensus        95 ~-~l~~~i  101 (213)
                      . +|.+||
T Consensus        93 ~~~l~~f~  100 (100)
T cd02999          93 LDSLAAFY  100 (100)
T ss_pred             HHHHHhhC
Confidence            5 677764

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.85  E-value=7.1e-21  Score=133.15  Aligned_cols=98  Identities=21%  Similarity=0.439  Sum_probs=84.8

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      +++++.+.+...+.++ .++|.|||+||++|+++.|.++++++.+++  ..+.++.+|++++..++++|+|.++||+++|
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   80 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF   80 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence            6788887666666555 599999999999999999999999999874  3699999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHH
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i  101 (213)
                      ++|+.+.++.|..+. +|.+||
T Consensus        81 ~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          81 KDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             eCCCeeeEeeCCCCHHHHHhhC
Confidence            999988778887765 576654

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.85  E-value=7.3e-21  Score=150.59  Aligned_cols=109  Identities=20%  Similarity=0.282  Sum_probs=94.4

Q ss_pred             eEEeCCchhhhhhc-----CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          3 VVQISEELDVEKYG-----KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         3 v~~l~~~~~~~~~~-----~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      +++++++++.+.+.     .+++++|.|||+||++|+++.|.|+++++++++ .+.++.+|++++++++++|+|+++||+
T Consensus        32 Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~~PTl  110 (224)
T PTZ00443         32 LVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKGYPTL  110 (224)
T ss_pred             cEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCcCCEE
Confidence            67888866666553     358999999999999999999999999999997 799999999999999999999999999


Q ss_pred             EEEeCCCCcccccCCCc-hhHHHHHHHHhccCCCCC
Q psy15246         78 VILKNLKPVDRVEGADP-ESLDKKLQNQASTMKNQP  112 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~-~~l~~~i~~~~~~~kg~p  112 (213)
                      ++|++|+.+.+..|... ++|.+|+.+......+.|
T Consensus       111 ~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~~~~~  146 (224)
T PTZ00443        111 LLFDKGKMYQYEGGDRSTEKLAAFALGDFKKALGAP  146 (224)
T ss_pred             EEEECCEEEEeeCCCCCHHHHHHHHHHHHHhhcCCC
Confidence            99999998888888554 489999999876555444

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.85  E-value=1.1e-20  Score=149.79  Aligned_cols=166  Identities=17%  Similarity=0.246  Sum_probs=116.0

Q ss_pred             hhhcCCCeEEEEEEc---CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc-c
Q psy15246         13 EKYGKDKTAVVHFYA---DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD-R   88 (213)
Q Consensus        13 ~~~~~~~~~vV~F~a---~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~-~   88 (213)
                      +.+. +...++.|++   +||++|+.+.|.++++++.++.-.+.++.+|.+++++++++|+|.++||+++|++|+.+. +
T Consensus        15 ~~~~-~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~   93 (215)
T TIGR02187        15 KELK-NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIR   93 (215)
T ss_pred             HhcC-CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEE
Confidence            3344 4445666888   999999999999999999996323567777777999999999999999999999998874 7


Q ss_pred             ccCCCch-hHHHHHHHHhccCCCCCCcccccCCCcccccchhh-hhhhheeccCC-CCCCCC-------------CCceE
Q psy15246         89 VEGADPE-SLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQE-VREGLKIYSNW-PTYPQV-------------VPYDT  152 (213)
Q Consensus        89 ~~g~~~~-~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~-~~~~v~~~apW-P~~~~~-------------v~~~~  152 (213)
                      +.|..+. ++.++|+.+++ +.+..   ..++....+.+.+.. ...++.|+++| |.++.+             +.+..
T Consensus        94 ~~G~~~~~~l~~~i~~~~~-~~~~~---~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~  169 (215)
T TIGR02187        94 YTGIPAGYEFAALIEDIVR-VSQGE---PGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEM  169 (215)
T ss_pred             EeecCCHHHHHHHHHHHHH-hcCCC---CCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEE
Confidence            7786655 79999998864 32221   233444455554322 22444588999 445443             56678


Q ss_pred             EeccCCHHHHHHHHhhcCCCcccceEeC--Ce-EeehH
Q psy15246        153 FDILQDQEVREGLKIYSNWPTYPQVYVN--TE-LIGGL  187 (213)
Q Consensus       153 ~d~~~~~~~~~~l~~~~~~pt~p~i~i~--g~-~~gg~  187 (213)
                      +|+..++++...+. +   .++|++.++  |+ ++|..
T Consensus       170 vD~~~~~~~~~~~~-V---~~vPtl~i~~~~~~~~G~~  203 (215)
T TIGR02187       170 IEANENPDLAEKYG-V---MSVPKIVINKGVEEFVGAY  203 (215)
T ss_pred             EeCCCCHHHHHHhC-C---ccCCEEEEecCCEEEECCC
Confidence            89888887766544 3   445555555  44 56643

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PTZ00051 thioredoxin; Provisional

Probab=99.85  E-value=1e-20  Score=131.58  Aligned_cols=96  Identities=26%  Similarity=0.534  Sum_probs=86.0

Q ss_pred             ceEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      +|.++++ +...++++.+++++|+||++||++|+++.+.++++++.++  ++.|+.+|++++.+++++|+|.++||+++|
T Consensus         1 ~v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   78 (98)
T PTZ00051          1 MVHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELSEVAEKENITSMPTFKVF   78 (98)
T ss_pred             CeEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence            4677877 5566667889999999999999999999999999999887  699999999999999999999999999999


Q ss_pred             eCCCCcccccCCCchhHHH
Q psy15246         81 KNLKPVDRVEGADPESLDK   99 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~~l~~   99 (213)
                      ++|+.+.+..|...++|.+
T Consensus        79 ~~g~~~~~~~G~~~~~~~~   97 (98)
T PTZ00051         79 KNGSVVDTLLGANDEALKQ   97 (98)
T ss_pred             eCCeEEEEEeCCCHHHhhc
Confidence            9999999999987766653

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.85  E-value=8.3e-21  Score=135.67  Aligned_cols=90  Identities=27%  Similarity=0.395  Sum_probs=81.6

Q ss_pred             ceEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      ++.++++ ..+.+.++++++++|+||++||++|+.+.|.+++++++++  ++.|++||++++++++++|+|.++||+++|
T Consensus         5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f   82 (113)
T cd02989           5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPFLVEKLNIKVLPTVILF   82 (113)
T ss_pred             CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence            3677888 6666777888999999999999999999999999999998  699999999999999999999999999999


Q ss_pred             eCCCCcccccCCC
Q psy15246         81 KNLKPVDRVEGAD   93 (213)
Q Consensus        81 ~~g~~~~~~~g~~   93 (213)
                      ++|+.+.+..|..
T Consensus        83 k~G~~v~~~~g~~   95 (113)
T cd02989          83 KNGKTVDRIVGFE   95 (113)
T ss_pred             ECCEEEEEEECcc
Confidence            9999888777654

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.84  E-value=1.6e-20  Score=137.99  Aligned_cols=108  Identities=14%  Similarity=0.251  Sum_probs=86.4

Q ss_pred             eEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE-
Q psy15246          3 VVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV-   78 (213)
Q Consensus         3 v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~-   78 (213)
                      +.++.+ ....+.+  +.+++++|.|||+||++|+.+.|.++++++++++ .+.|++||+|++++++++|+|++.||++ 
T Consensus         5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~~dla~~y~I~~~~t~~~   83 (142)
T PLN00410          5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEVPDFNTMYELYDPCTVMF   83 (142)
T ss_pred             HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHcCccCCCcEEE
Confidence            345665 3333334  5688999999999999999999999999999996 6888999999999999999999887666 


Q ss_pred             EEeCCC-CcccccC--------CCch-hHHHHHHHHhcc-CCCC
Q psy15246         79 ILKNLK-PVDRVEG--------ADPE-SLDKKLQNQAST-MKNQ  111 (213)
Q Consensus        79 ~~~~g~-~~~~~~g--------~~~~-~l~~~i~~~~~~-~kg~  111 (213)
                      +|++|+ .+.+..|        .... +|.+.++..+.. ++|.
T Consensus        84 ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~  127 (142)
T PLN00410         84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGR  127 (142)
T ss_pred             EEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCC
Confidence            899998 8888888        3333 687777776543 4443

>KOG0190|consensus

Probab=99.84  E-value=6.5e-21  Score=163.91  Aligned_cols=105  Identities=24%  Similarity=0.396  Sum_probs=94.3

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |+++|.+++.+.+..+..++|.||||||+||++++|.++++++.+..  +.+.+++|||+++.++|.+|+|++|||+.+|
T Consensus        27 Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiF  106 (493)
T KOG0190|consen   27 VLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIF  106 (493)
T ss_pred             eEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEE
Confidence            78899999999999999999999999999999999999999999875  4799999999999999999999999999999


Q ss_pred             eCCCC-cccccCCCchhHHHHHHHHhcc
Q psy15246         81 KNLKP-VDRVEGADPESLDKKLQNQAST  107 (213)
Q Consensus        81 ~~g~~-~~~~~g~~~~~l~~~i~~~~~~  107 (213)
                      ++|+. ..|.+++..+.|..|+++..+.
T Consensus       107 rnG~~~~~Y~G~r~adgIv~wl~kq~gP  134 (493)
T KOG0190|consen  107 RNGRSAQDYNGPREADGIVKWLKKQSGP  134 (493)
T ss_pred             ecCCcceeccCcccHHHHHHHHHhccCC
Confidence            99996 5544445555899999998654

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.84  E-value=2.6e-20  Score=130.61  Aligned_cols=100  Identities=28%  Similarity=0.419  Sum_probs=86.7

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCC--chhHHHhCCCccccEEE
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAED--LPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~   78 (213)
                      .|+++++....+.++++++++|.|||+||++|+++.|.++++++.++. ..+.++.+|+++  ++.++++++|+++||++
T Consensus         1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~   80 (104)
T cd02997           1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK   80 (104)
T ss_pred             CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence            367888877777788888999999999999999999999999998872 268999999998  99999999999999999


Q ss_pred             EEeCCCCcccccCCCch-hHHHHH
Q psy15246         79 ILKNLKPVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~~-~l~~~i  101 (213)
                      +|++|+.+.++.|.... +|.+||
T Consensus        81 ~~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          81 YFENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEeCCCeeEEeCCCCCHHHHHhhC
Confidence            99999977778776655 576653

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.83  E-value=1.4e-20  Score=134.53  Aligned_cols=88  Identities=26%  Similarity=0.402  Sum_probs=77.8

Q ss_pred             eEEeCCchhhhhhcC---CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISEELDVEKYGK---DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~~~~~~~~~~---~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +.+++++.+.+.+..   +++++|+||+|||++|+.+.|.+++++++++  ++.|++||++++ +++++|+|.++||+++
T Consensus         6 v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~   82 (113)
T cd02957           6 VREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA-FLVNYLDIKVLPTLLV   82 (113)
T ss_pred             EEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence            677888555555533   3899999999999999999999999999998  689999999999 9999999999999999


Q ss_pred             EeCCCCcccccCCC
Q psy15246         80 LKNLKPVDRVEGAD   93 (213)
Q Consensus        80 ~~~g~~~~~~~g~~   93 (213)
                      |++|+.+.+..|..
T Consensus        83 f~~G~~v~~~~G~~   96 (113)
T cd02957          83 YKNGELIDNIVGFE   96 (113)
T ss_pred             EECCEEEEEEecHH
Confidence            99999988887744

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.83  E-value=2.9e-20  Score=130.91  Aligned_cols=93  Identities=13%  Similarity=0.070  Sum_probs=83.6

Q ss_pred             EeCCchhhhhhcCCCeEEEEEEcCC--CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          5 QISEELDVEKYGKDKTAVVHFYADW--SDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         5 ~l~~~~~~~~~~~~~~~vV~F~a~w--C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +++..++.+.++.++.++|.|||+|  ||+|+.+.|.++++++++++ .+.|++||++++++++.+|+|+++||+++|++
T Consensus        14 ~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~~~la~~f~V~sIPTli~fkd   92 (111)
T cd02965          14 RVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADEQALAARFGVLRTPALLFFRD   92 (111)
T ss_pred             ccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCCHHHHHHcCCCcCCEEEEEEC
Confidence            4566566677789999999999997  99999999999999999996 79999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHH
Q psy15246         83 LKPVDRVEGADPE-SLD   98 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~   98 (213)
                      |+.+.+..|.... ++.
T Consensus        93 Gk~v~~~~G~~~~~e~~  109 (111)
T cd02965          93 GRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             CEEEEEEeCccCHHHHh
Confidence            9999999887665 443

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.83  E-value=8.3e-20  Score=127.92  Aligned_cols=98  Identities=21%  Similarity=0.333  Sum_probs=81.5

Q ss_pred             eEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      |+++++....+.+ +.+++++|.||++||++|+++.|.|.++++.+++ .+.++.+|++++++++++|+|+++||+++|+
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~   80 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFG   80 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence            6778886566555 5566799999999999999999999999999886 7999999999999999999999999999999


Q ss_pred             CC-CCcccccCC-CchhHHHHH
Q psy15246         82 NL-KPVDRVEGA-DPESLDKKL  101 (213)
Q Consensus        82 ~g-~~~~~~~g~-~~~~l~~~i  101 (213)
                      +| +....+.|. +.++|.+|+
T Consensus        81 ~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          81 AGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCCcceeecCCCCCHHHHHHHh
Confidence            88 333344454 444687775

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.83  E-value=4.9e-20  Score=127.84  Aligned_cols=90  Identities=43%  Similarity=0.748  Sum_probs=80.2

Q ss_pred             hhhhhcC--CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccc
Q psy15246         11 DVEKYGK--DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDR   88 (213)
Q Consensus        11 ~~~~~~~--~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~   88 (213)
                      ..+.+..  +++++|.||++||++|+++.+.++++++.+.. .+.++++|++++++++++|+|.++||+++|++|+.+.+
T Consensus         5 ~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~   83 (97)
T cd02984           5 FEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDR   83 (97)
T ss_pred             HHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEE
Confidence            3344433  59999999999999999999999999999644 89999999999999999999999999999999999999


Q ss_pred             ccCCCchhHHHHH
Q psy15246         89 VEGADPESLDKKL  101 (213)
Q Consensus        89 ~~g~~~~~l~~~i  101 (213)
                      ..|...++|.+.|
T Consensus        84 ~~g~~~~~l~~~~   96 (97)
T cd02984          84 VSGADPKELAKKV   96 (97)
T ss_pred             EeCCCHHHHHHhh
Confidence            9999888887765

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.82  E-value=5.5e-20  Score=137.44  Aligned_cols=91  Identities=23%  Similarity=0.431  Sum_probs=79.9

Q ss_pred             eEEeCCchhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcc------c
Q psy15246          3 VVQISEELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA------V   74 (213)
Q Consensus         3 v~~l~~~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~------~   74 (213)
                      +++++.+.+.+.+  ..+++++|+|||+||++|+++.|.++++++++++.++.|++||++++++++++|+|.+      +
T Consensus        30 v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~  109 (152)
T cd02962          30 IKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQL  109 (152)
T ss_pred             cEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCC
Confidence            5667775555555  3457999999999999999999999999999875369999999999999999999998      9


Q ss_pred             cEEEEEeCCCCcccccCCC
Q psy15246         75 PTFVILKNLKPVDRVEGAD   93 (213)
Q Consensus        75 Pti~~~~~g~~~~~~~g~~   93 (213)
                      ||+++|++|+.+.+..|.+
T Consensus       110 PT~ilf~~Gk~v~r~~G~~  128 (152)
T cd02962         110 PTIILFQGGKEVARRPYYN  128 (152)
T ss_pred             CEEEEEECCEEEEEEeccc
Confidence            9999999999999988854

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PRK10824 glutaredoxin-4; Provisional

Probab=99.82  E-value=3.7e-20  Score=131.41  Aligned_cols=94  Identities=31%  Similarity=0.582  Sum_probs=78.3

Q ss_pred             HHHHHHHHhcc------CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhcC
Q psy15246         97 LDKKLQNQAST------MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSN  170 (213)
Q Consensus        97 l~~~i~~~~~~------~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~~  170 (213)
                      ..+++++.+++      +||+|.. +.|++..       .++.++..+.        ++|..+|+..+++++..|+++++
T Consensus         4 ~~~~v~~~I~~~~Vvvf~Kg~~~~-p~Cpyc~-------~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg   67 (115)
T PRK10824          4 TIEKIQRQIAENPILLYMKGSPKL-PSCGFSA-------QAVQALSACG--------ERFAYVDILQNPDIRAELPKYAN   67 (115)
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCC-CCCchHH-------HHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhC
Confidence            44566666655      8888876 6777776       3445555443        78999999999999999999999


Q ss_pred             CCcccceEeCCeEeehHHHHHHHHHcCCchhhccCC
Q psy15246        171 WPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQP  206 (213)
Q Consensus       171 ~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~  206 (213)
                      |||+|||||+|+||||+|++.+|+++|+|.++|+..
T Consensus        68 ~~TVPQIFI~G~~IGG~ddl~~l~~~G~L~~lL~~~  103 (115)
T PRK10824         68 WPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKET  103 (115)
T ss_pred             CCCCCeEEECCEEEcChHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999643

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.82  E-value=1.7e-19  Score=126.99  Aligned_cols=99  Identities=20%  Similarity=0.372  Sum_probs=80.5

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |+.+.+++..  +.++++++|.|||+||++|+++.|.|+++++.+++  .++.++.+|+++.++++++|+|.++||+++|
T Consensus         2 ~~~~~~~~~~--~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~   79 (104)
T cd03000           2 VLDLDDSFKD--VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL   79 (104)
T ss_pred             eeechhhhhh--hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEE
Confidence            3445544332  45678999999999999999999999999999853  2599999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHH
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      ++|.. ..+.|.... +|.+++++.
T Consensus        80 ~~~~~-~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          80 KGDLA-YNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             cCCCc-eeecCCCCHHHHHHHHHhh
Confidence            87754 445665554 789888764

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.81  E-value=2.2e-19  Score=127.53  Aligned_cols=100  Identities=19%  Similarity=0.309  Sum_probs=80.7

Q ss_pred             ceEEeCCchhhhhh---cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHH-hCCCccccE
Q psy15246          2 SVVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSL-NYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~~~~~~~~---~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~-~~~I~~~Pt   76 (213)
                      .|++++.+.+...+   .++++++|.||++||++|+++.|.|+++++.+++.++.++.||++. +..++. .++|+++||
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            37788886555554   3578999999999999999999999999999986459999999998 578886 599999999


Q ss_pred             EEEEeCC-CCcccccC--CCchhHHHHH
Q psy15246         77 FVILKNL-KPVDRVEG--ADPESLDKKL  101 (213)
Q Consensus        77 i~~~~~g-~~~~~~~g--~~~~~l~~~i  101 (213)
                      +++|++| +....+.|  .+..+|..||
T Consensus        82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            9999866 34445666  3445677664

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.81  E-value=3.6e-19  Score=124.24  Aligned_cols=98  Identities=21%  Similarity=0.337  Sum_probs=84.4

Q ss_pred             CCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC-cEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCC
Q psy15246          7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKP   85 (213)
Q Consensus         7 ~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~-~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~   85 (213)
                      +...+.+.+.++++++|.||++||++|+++.+.|+++++.+++. ++.++.+|++++++++++|+|+++|++++|++|+.
T Consensus         2 ~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~   81 (102)
T TIGR01126         2 TASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKK   81 (102)
T ss_pred             chhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCc
Confidence            45555666678999999999999999999999999999998853 49999999999999999999999999999998875


Q ss_pred             cccccCCCch-hHHHHHHHH
Q psy15246         86 VDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        86 ~~~~~g~~~~-~l~~~i~~~  104 (213)
                      ...+.|.... +|..+|+++
T Consensus        82 ~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        82 PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             ceeecCCCCHHHHHHHHHhc
Confidence            5566676554 799998875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.81  E-value=2.8e-19  Score=127.09  Aligned_cols=98  Identities=14%  Similarity=0.182  Sum_probs=81.4

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEc--CCCH---HHHhHHHHHHHHHHHcCCCcEEEEEEeC-----CCchhHHHhCCC
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYA--DWSD---ECKHMNTLFDEMSKQSKYSQVVFARCIA-----EDLPKLSLNYKV   71 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a--~wC~---~C~~~~~~~~~l~~~~~~~~v~~~~vd~-----~~~~~l~~~~~I   71 (213)
                      .+++|+++++.+++.+++.+||.|||  |||+   +|+++.|.+.+.+.     .|.+++|||     .++.+||++|+|
T Consensus         2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~~~L~~~y~I   76 (116)
T cd03007           2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLNMELGERYKL   76 (116)
T ss_pred             CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhhHHHHHHhCC
Confidence            36889998888899999999999999  9999   88888888777554     488999999     467899999999


Q ss_pred             c--cccEEEEEeCCC---CcccccC-CCchhHHHHHHHH
Q psy15246         72 S--AVPTFVILKNLK---PVDRVEG-ADPESLDKKLQNQ  104 (213)
Q Consensus        72 ~--~~Pti~~~~~g~---~~~~~~g-~~~~~l~~~i~~~  104 (213)
                      +  ++||+++|++|.   ++.+.++ ++.++|.+||.+.
T Consensus        77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            9  999999999884   3444443 5556899999864

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.80  E-value=4.9e-19  Score=124.06  Aligned_cols=99  Identities=24%  Similarity=0.363  Sum_probs=81.8

Q ss_pred             ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +|.+++.+.+...+ +.+++++|.||++||++|+++.|.|+++++.+++ .++.++++|++++ +++..+++.++||+++
T Consensus         1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~   79 (104)
T cd02995           1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF   79 (104)
T ss_pred             CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence            57889886666655 5568999999999999999999999999999875 3699999999987 6889999999999999


Q ss_pred             EeCCC--CcccccCCCch-hHHHHH
Q psy15246         80 LKNLK--PVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        80 ~~~g~--~~~~~~g~~~~-~l~~~i  101 (213)
                      |++|+  ...++.|.... +|.+||
T Consensus        80 ~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          80 FPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EcCCCcCCceEccCCcCHHHHHhhC
Confidence            99887  45556665444 676664

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>TIGR01068 thioredoxin thioredoxin

Probab=99.80  E-value=5.4e-19  Score=122.93  Aligned_cols=88  Identities=30%  Similarity=0.630  Sum_probs=80.2

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE   95 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~   95 (213)
                      ..+++++|.||++||++|+.+.+.++++++.+++ ++.|+.+|++++.+++++|+|.++||+++|++|+.+.+..|....
T Consensus        12 ~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~   90 (101)
T TIGR01068        12 SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPK   90 (101)
T ss_pred             hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCH
Confidence            4467999999999999999999999999998886 799999999999999999999999999999999988888887774


Q ss_pred             -hHHHHHHHH
Q psy15246         96 -SLDKKLQNQ  104 (213)
Q Consensus        96 -~l~~~i~~~  104 (213)
                       ++.++|++.
T Consensus        91 ~~l~~~l~~~  100 (101)
T TIGR01068        91 AALKQLINKN  100 (101)
T ss_pred             HHHHHHHHhh
Confidence             799998875

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.80  E-value=3.9e-19  Score=125.13  Aligned_cols=72  Identities=14%  Similarity=0.247  Sum_probs=67.0

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDR   88 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~   88 (213)
                      +++++++|.|+|+||++|+.+.|.++++++++++ .+.|++||+++.++++++|+|++.||+++|++|+.+.-
T Consensus        12 ~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~   83 (114)
T cd02986          12 TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKV   83 (114)
T ss_pred             cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEE
Confidence            3699999999999999999999999999999984 39999999999999999999999999999999986543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.80  E-value=4.6e-19  Score=131.63  Aligned_cols=97  Identities=23%  Similarity=0.366  Sum_probs=84.3

Q ss_pred             hhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc--hhHHHhCCCccccEEEEEe-CCCCc
Q psy15246         10 LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL--PKLSLNYKVSAVPTFVILK-NLKPV   86 (213)
Q Consensus        10 ~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~--~~l~~~~~I~~~Pti~~~~-~g~~~   86 (213)
                      ...+.+.++++++|+|||+||++|+.+.|.++++++.+.+ .+.|+.||++..  .+++++|+|.++||+++|+ +|+.+
T Consensus        12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v   90 (142)
T cd02950          12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE   90 (142)
T ss_pred             CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence            3445568899999999999999999999999999999986 678888887754  5899999999999999995 89999


Q ss_pred             ccccCCCch-hHHHHHHHHhcc
Q psy15246         87 DRVEGADPE-SLDKKLQNQAST  107 (213)
Q Consensus        87 ~~~~g~~~~-~l~~~i~~~~~~  107 (213)
                      .+..|.... +|.++|+++++.
T Consensus        91 ~~~~G~~~~~~l~~~l~~l~~~  112 (142)
T cd02950          91 GQSIGLQPKQVLAQNLDALVAG  112 (142)
T ss_pred             EEEeCCCCHHHHHHHHHHHHcC
Confidence            999998876 699999998753

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.79  E-value=1e-18  Score=122.54  Aligned_cols=99  Identities=25%  Similarity=0.410  Sum_probs=81.1

Q ss_pred             eEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCC-chhHHHhCCCccccEEEE
Q psy15246          3 VVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAED-LPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~-~~~l~~~~~I~~~Pti~~   79 (213)
                      ++++++....+.+ +.+++++|.||++||++|+++.|.|+++++.++. .++.++.+|+++ +++++++|+|+++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            5678886555555 4556999999999999999999999999999872 369999999999 999999999999999999


Q ss_pred             EeCC-CCcccccCCCc-hhHHHHH
Q psy15246         80 LKNL-KPVDRVEGADP-ESLDKKL  101 (213)
Q Consensus        80 ~~~g-~~~~~~~g~~~-~~l~~~i  101 (213)
                      |++| +....+.|... ++|.+||
T Consensus        82 ~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCCCccccCCccCHHHHHhhC
Confidence            9877 45555666444 3677664

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.79  E-value=1.3e-18  Score=121.03  Aligned_cols=89  Identities=11%  Similarity=0.203  Sum_probs=80.9

Q ss_pred             hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccC
Q psy15246         12 VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEG   91 (213)
Q Consensus        12 ~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g   91 (213)
                      .+..+.+++++|.||++||+.|+.+.|.++++++++.+ ++.++.+|++++++++++++|.++||+++|++|+.+.+..|
T Consensus         7 ~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g   85 (97)
T cd02949           7 KLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISG   85 (97)
T ss_pred             HHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeC
Confidence            34457899999999999999999999999999999986 79999999999999999999999999999999999999989


Q ss_pred             CCch-hHHHHH
Q psy15246         92 ADPE-SLDKKL  101 (213)
Q Consensus        92 ~~~~-~l~~~i  101 (213)
                      ..+. +|.+++
T Consensus        86 ~~~~~~~~~~l   96 (97)
T cd02949          86 VKMKSEYREFI   96 (97)
T ss_pred             CccHHHHHHhh
Confidence            7776 677765

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.78  E-value=1e-18  Score=122.90  Aligned_cols=90  Identities=22%  Similarity=0.285  Sum_probs=78.2

Q ss_pred             hhhhhcCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCC----chhHHHhCCCccccEEEEEe--
Q psy15246         11 DVEKYGKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAED----LPKLSLNYKVSAVPTFVILK--   81 (213)
Q Consensus        11 ~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~----~~~l~~~~~I~~~Pti~~~~--   81 (213)
                      ..+.++++++++|.||++||++|+++.+.+   +++++.+.+ ++.++.+|+++    ..+++++|+|.++||+++|+  
T Consensus         4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~   82 (104)
T cd02953           4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPG   82 (104)
T ss_pred             HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence            345668899999999999999999999988   678888876 89999999987    57899999999999999998  


Q ss_pred             CCCCcccccCCCch-hHHHHH
Q psy15246         82 NLKPVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i  101 (213)
                      +|+.+.+..|..+. +|.++|
T Consensus        83 ~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          83 GEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCcccccccCHHHHHHHh
Confidence            78888888887766 677765

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.78  E-value=6.9e-19  Score=134.92  Aligned_cols=90  Identities=20%  Similarity=0.285  Sum_probs=78.4

Q ss_pred             ceEEeCC-chhhhhhcC---CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          2 SVVQISE-ELDVEKYGK---DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~---~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      .++++++ ..+.+.+..   +.+++|+||++||++|+.+.|.++++++.++  .+.|++||+++. +++.+|+|.++||+
T Consensus        63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-~l~~~f~v~~vPTl  139 (175)
T cd02987          63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-GASDEFDTDALPAL  139 (175)
T ss_pred             eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-hhHHhCCCCCCCEE
Confidence            4678888 666666533   3499999999999999999999999999998  799999999988 99999999999999


Q ss_pred             EEEeCCCCcccccCCCc
Q psy15246         78 VILKNLKPVDRVEGADP   94 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~   94 (213)
                      ++|++|+.+.+..|...
T Consensus       140 llyk~G~~v~~~vG~~~  156 (175)
T cd02987         140 LVYKGGELIGNFVRVTE  156 (175)
T ss_pred             EEEECCEEEEEEechHH
Confidence            99999998887776543

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.77  E-value=2.3e-18  Score=119.19  Aligned_cols=96  Identities=26%  Similarity=0.389  Sum_probs=81.6

Q ss_pred             EeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC-CCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC
Q psy15246          5 QISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL   83 (213)
Q Consensus         5 ~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~-~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g   83 (213)
                      +++.......+.++++++|.||++||++|+.+.+.|+++++.++ ..++.++.+|++++..++++|+|+++||+++|++|
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~   81 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG   81 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence            56676667777777899999999999999999999999999984 22899999999999999999999999999999977


Q ss_pred             -CCcccccCCCch-hHHHH
Q psy15246         84 -KPVDRVEGADPE-SLDKK  100 (213)
Q Consensus        84 -~~~~~~~g~~~~-~l~~~  100 (213)
                       +...++.|.... +|.+|
T Consensus        82 ~~~~~~~~g~~~~~~i~~~  100 (101)
T cd02961          82 SKEPVKYEGPRTLESLVEF  100 (101)
T ss_pred             CcccccCCCCcCHHHHHhh
Confidence             666777775543 56655

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.77  E-value=4.8e-18  Score=121.40  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=79.5

Q ss_pred             hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc--cc
Q psy15246         12 VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD--RV   89 (213)
Q Consensus        12 ~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~--~~   89 (213)
                      .+.+.+...++|.|||+||++|+.+.|.++++++.++  .+.+..+|.+++++++++|+|.++||+++|++|....  ++
T Consensus        16 ~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~   93 (113)
T cd02975          16 FKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRY   93 (113)
T ss_pred             HHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence            3445678889999999999999999999999998874  7999999999999999999999999999999875433  56


Q ss_pred             cCCCch-hHHHHHHHHhc
Q psy15246         90 EGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        90 ~g~~~~-~l~~~i~~~~~  106 (213)
                      .|..+. ++.++|+..++
T Consensus        94 ~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          94 YGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             EecCchHHHHHHHHHHHh
Confidence            675555 79999988763

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.75  E-value=6.8e-18  Score=120.82  Aligned_cols=83  Identities=17%  Similarity=0.349  Sum_probs=71.1

Q ss_pred             ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCC--CchhHHHhCCCccccE
Q psy15246          2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAE--DLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~--~~~~l~~~~~I~~~Pt   76 (213)
                      ++++++...+.+.+ ..+++++|.|||+||++|+.+.|.|+++++.+++  ..+.|+.+||+  .+.+++++|+|+++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            47888886566655 5567999999999999999999999999998763  25899999986  4778999999999999


Q ss_pred             EEEEeCCC
Q psy15246         77 FVILKNLK   84 (213)
Q Consensus        77 i~~~~~g~   84 (213)
                      +++|++|.
T Consensus        82 ~~lf~~~~   89 (114)
T cd02992          82 LRYFPPFS   89 (114)
T ss_pred             EEEECCCC
Confidence            99999886

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.74  E-value=1.4e-17  Score=145.49  Aligned_cols=104  Identities=22%  Similarity=0.394  Sum_probs=91.2

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |+++++......++++++++|.|||+||++|+++.|.|.++++.+.+  .++.|+.|||+.+.++|++|+|.++||+++|
T Consensus         3 v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~   82 (462)
T TIGR01130         3 VLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIF   82 (462)
T ss_pred             ceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEE
Confidence            67888877788888899999999999999999999999999988764  2499999999999999999999999999999


Q ss_pred             eCCCC-cccccCCCch-hHHHHHHHHhc
Q psy15246         81 KNLKP-VDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        81 ~~g~~-~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ++|+. +..+.|.... +|.+|+.+.+.
T Consensus        83 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~  110 (462)
T TIGR01130        83 RNGEDSVSDYNGPRDADGIVKYMKKQSG  110 (462)
T ss_pred             eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence            99987 5556665544 79999998865

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=99.74  E-value=1.7e-17  Score=145.88  Aligned_cols=104  Identities=20%  Similarity=0.371  Sum_probs=90.2

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      +++++.......+.+++.++|.|||+||++|+++.|.|+++++.+..  .++.++.|||+.+.++|++|+|.++||+++|
T Consensus        34 v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  113 (477)
T PTZ00102         34 VTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFF  113 (477)
T ss_pred             cEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEE
Confidence            56777777777788899999999999999999999999999887753  2699999999999999999999999999999


Q ss_pred             eCCCCcccccCCCc-hhHHHHHHHHhcc
Q psy15246         81 KNLKPVDRVEGADP-ESLDKKLQNQAST  107 (213)
Q Consensus        81 ~~g~~~~~~~g~~~-~~l~~~i~~~~~~  107 (213)
                      ++|+.+ ++.|... ..|.+|+.+.++.
T Consensus       114 ~~g~~~-~y~g~~~~~~l~~~l~~~~~~  140 (477)
T PTZ00102        114 NKGNPV-NYSGGRTADGIVSWIKKLTGP  140 (477)
T ss_pred             ECCceE-EecCCCCHHHHHHHHHHhhCC
Confidence            999877 5666554 4899999998754

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.74  E-value=2.4e-17  Score=142.50  Aligned_cols=102  Identities=20%  Similarity=0.279  Sum_probs=83.2

Q ss_pred             eEEeCCchhhhhh---cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-hHH-HhCCCccccEE
Q psy15246          3 VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-KLS-LNYKVSAVPTF   77 (213)
Q Consensus         3 v~~l~~~~~~~~~---~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-~l~-~~~~I~~~Pti   77 (213)
                      |++|+.+++...+   +.++++||.||||||++|+.+.|.|+++++++++.++.|+.||++.+. +++ ++|+|.++||+
T Consensus       353 Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTi  432 (463)
T TIGR00424       353 VVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI  432 (463)
T ss_pred             eEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceE
Confidence            7788887666665   378999999999999999999999999999998645899999999764 454 78999999999


Q ss_pred             EEEeCCC--CcccccC-CCchhHHHHHHHH
Q psy15246         78 VILKNLK--PVDRVEG-ADPESLDKKLQNQ  104 (213)
Q Consensus        78 ~~~~~g~--~~~~~~g-~~~~~l~~~i~~~  104 (213)
                      ++|++|.  .+.+..| ++.+.|..||+.+
T Consensus       433 i~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       433 LFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             EEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence            9999885  3444344 4555799988753

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.73  E-value=2.5e-17  Score=142.32  Aligned_cols=102  Identities=21%  Similarity=0.335  Sum_probs=85.2

Q ss_pred             eEEeCCchhhhhh---cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-CchhHHH-hCCCccccEE
Q psy15246          3 VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-DLPKLSL-NYKVSAVPTF   77 (213)
Q Consensus         3 v~~l~~~~~~~~~---~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-~~~~l~~-~~~I~~~Pti   77 (213)
                      |++++.+++.+.+   ..+++++|.||||||++|++|.|.|+++++.+.+.++.|+++|++ .+.++++ +|+|.++||+
T Consensus       347 Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTi  426 (457)
T PLN02309        347 VVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI  426 (457)
T ss_pred             cEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEE
Confidence            6778886666654   578999999999999999999999999999998646999999999 7888996 6999999999


Q ss_pred             EEEeCCC--CcccccC-CCchhHHHHHHHH
Q psy15246         78 VILKNLK--PVDRVEG-ADPESLDKKLQNQ  104 (213)
Q Consensus        78 ~~~~~g~--~~~~~~g-~~~~~l~~~i~~~  104 (213)
                      ++|++|.  .+.+..| ++.++|..||+.+
T Consensus       427 l~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        427 LLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             EEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            9999774  3444444 4556899999864

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.73  E-value=2.5e-17  Score=119.15  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=76.7

Q ss_pred             EEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-----------hHHHhCC--
Q psy15246          4 VQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-----------KLSLNYK--   70 (213)
Q Consensus         4 ~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-----------~l~~~~~--   70 (213)
                      .+++.+...+.+++++.++|+|+++|||+|+.+.|.+++++++.   ++.++.||.+.+.           ++.++|+  
T Consensus         9 ~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~   85 (122)
T TIGR01295         9 EVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP   85 (122)
T ss_pred             eecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence            45666667777888999999999999999999999999999983   4678888887543           5556665  


Q ss_pred             --CccccEEEEEeCCCCcccccCC-Cch-hHHHHHH
Q psy15246         71 --VSAVPTFVILKNLKPVDRVEGA-DPE-SLDKKLQ  102 (213)
Q Consensus        71 --I~~~Pti~~~~~g~~~~~~~g~-~~~-~l~~~i~  102 (213)
                        |.++||+++|++|+.+.+..|. .+. +|.+++.
T Consensus        86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        86 TSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             ccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence              5569999999999999998883 323 6777653

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG4277|consensus

Probab=99.72  E-value=5.5e-18  Score=135.89  Aligned_cols=93  Identities=20%  Similarity=0.409  Sum_probs=84.4

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCC
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA   92 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~   92 (213)
                      ...+..|+|.||||||+||+++.|.|.++.-.+++  .-+++.++||+..+.++.+++|++||||.+|++|..+.+.+|+
T Consensus        40 nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R  119 (468)
T KOG4277|consen   40 NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGR  119 (468)
T ss_pred             cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCc
Confidence            46788999999999999999999999999888875  3589999999999999999999999999999999999988888


Q ss_pred             CchhHHHHHHHHhcc
Q psy15246         93 DPESLDKKLQNQAST  107 (213)
Q Consensus        93 ~~~~l~~~i~~~~~~  107 (213)
                      ..++|.+|..+..+.
T Consensus       120 ~Kd~iieFAhR~a~a  134 (468)
T KOG4277|consen  120 EKDAIIEFAHRCAAA  134 (468)
T ss_pred             cHHHHHHHHHhcccc
Confidence            888899998877654

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.71  E-value=3.3e-17  Score=127.22  Aligned_cols=87  Identities=26%  Similarity=0.352  Sum_probs=73.6

Q ss_pred             ceEEeCCchhh-hhhcC--CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          2 SVVQISEELDV-EKYGK--DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~~~~~-~~~~~--~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      .|.+++...+. ++..+  +.++||+||++||++|+.+.|.|+++++.|+  .+.|++||++..   +.+|+|.++||++
T Consensus        83 ~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~---~~~~~i~~lPTll  157 (192)
T cd02988          83 EVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC---IPNYPDKNLPTIL  157 (192)
T ss_pred             eEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh---HhhCCCCCCCEEE
Confidence            36778875444 44433  4589999999999999999999999999998  799999999864   6899999999999


Q ss_pred             EEeCCCCcccccCCC
Q psy15246         79 ILKNLKPVDRVEGAD   93 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~   93 (213)
                      +|++|+.+.++.|..
T Consensus       158 iyk~G~~v~~ivG~~  172 (192)
T cd02988         158 VYRNGDIVKQFIGLL  172 (192)
T ss_pred             EEECCEEEEEEeCch
Confidence            999999888877753

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.71  E-value=9.5e-17  Score=116.60  Aligned_cols=94  Identities=17%  Similarity=0.209  Sum_probs=78.4

Q ss_pred             hhhhcCC-CeEEEEEEcCCCHHHHhHHHHHH---HHHHHcCCCcEEEEEEeCCCc-------------hhHHHhCCCccc
Q psy15246         12 VEKYGKD-KTAVVHFYADWSDECKHMNTLFD---EMSKQSKYSQVVFARCIAEDL-------------PKLSLNYKVSAV   74 (213)
Q Consensus        12 ~~~~~~~-~~~vV~F~a~wC~~C~~~~~~~~---~l~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~I~~~   74 (213)
                      .++..++ ++++|.|||+||++|+++.+.+.   ++.+.+.+ ++.++.+|.+.+             .+++.+|+|.++
T Consensus         7 ~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~   85 (125)
T cd02951           7 AEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT   85 (125)
T ss_pred             HHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc
Confidence            3455777 99999999999999999999885   56666654 788999998864             689999999999


Q ss_pred             cEEEEEeC--CCCcccccCCCch-hHHHHHHHHhc
Q psy15246         75 PTFVILKN--LKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        75 Pti~~~~~--g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ||+++|.+  |+.+.+..|.... .+.++|+..++
T Consensus        86 Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          86 PTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             cEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            99999985  5888888897765 78888888764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.69  E-value=1.6e-16  Score=107.97  Aligned_cols=88  Identities=36%  Similarity=0.667  Sum_probs=77.7

Q ss_pred             hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccC
Q psy15246         12 VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEG   91 (213)
Q Consensus        12 ~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g   91 (213)
                      ...+..+++++|.||++||++|+.+.+.++++++..+  ++.++.+|++.+.+++++|++.++||++++++|+.+....|
T Consensus         4 ~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g   81 (93)
T cd02947           4 EELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYP--KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVG   81 (93)
T ss_pred             HHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEec
Confidence            3445666999999999999999999999999998844  79999999999999999999999999999999998888888


Q ss_pred             CCch-hHHHHH
Q psy15246         92 ADPE-SLDKKL  101 (213)
Q Consensus        92 ~~~~-~l~~~i  101 (213)
                      .... +|.++|
T Consensus        82 ~~~~~~l~~~i   92 (93)
T cd02947          82 ADPKEELEEFL   92 (93)
T ss_pred             CCCHHHHHHHh
Confidence            7764 677765

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>KOG0912|consensus

Probab=99.69  E-value=8.7e-17  Score=129.00  Aligned_cols=101  Identities=19%  Similarity=0.342  Sum_probs=87.2

Q ss_pred             CCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHc----CCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQS----KYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         7 ~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~----~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +.++...++.+...++|.|||+||+.++.++|.|++.++.+    ++.++.+++|||+++.+++++|.|..|||+.+|++
T Consensus         2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn   81 (375)
T KOG0912|consen    2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN   81 (375)
T ss_pred             ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence            45566777888999999999999999999999999988664    43479999999999999999999999999999999


Q ss_pred             CCCcc-cccCCCch-hHHHHHHHHhcc
Q psy15246         83 LKPVD-RVEGADPE-SLDKKLQNQAST  107 (213)
Q Consensus        83 g~~~~-~~~g~~~~-~l~~~i~~~~~~  107 (213)
                      |.... .+.|.++. .|.++|++.++.
T Consensus        82 G~~~~rEYRg~RsVeaL~efi~kq~s~  108 (375)
T KOG0912|consen   82 GEMMKREYRGQRSVEALIEFIEKQLSD  108 (375)
T ss_pred             cchhhhhhccchhHHHHHHHHHHHhcc
Confidence            98776 45566655 799999988753

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.68  E-value=1.7e-16  Score=110.11  Aligned_cols=56  Identities=48%  Similarity=0.924  Sum_probs=53.9

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhc
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL  203 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~  203 (213)
                      ++|..+|+..+++.++.+++++|++|+|||||+|++|||+|++.+|+++|+|.++|
T Consensus        42 i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~~g~L~~~l   97 (97)
T TIGR00365        42 VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQSGELQTLL   97 (97)
T ss_pred             CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHHCcChHHhC
Confidence            78999999999999999999999999999999999999999999999999999876

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>KOG0190|consensus

Probab=99.68  E-value=1.1e-16  Score=137.89  Aligned_cols=102  Identities=25%  Similarity=0.389  Sum_probs=80.3

Q ss_pred             ceEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +|..+-. ++..-++..++.++|.||||||+||+++.|+|++|++.+++ .++.++++|++.|.-  ....+.++|||.+
T Consensus       367 pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~~fPTI~~  444 (493)
T KOG0190|consen  367 PVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVDGFPTILF  444 (493)
T ss_pred             CeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccccccceEEE
Confidence            3555555 44444568999999999999999999999999999999997 479999999998853  3446777999999


Q ss_pred             EeCCC---CcccccCCCchhHHHHHHHHh
Q psy15246         80 LKNLK---PVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        80 ~~~g~---~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      |+.|.   ++.+-+++..++|..|+.+..
T Consensus       445 ~pag~k~~pv~y~g~R~le~~~~fi~~~a  473 (493)
T KOG0190|consen  445 FPAGHKSNPVIYNGDRTLEDLKKFIKKSA  473 (493)
T ss_pred             ecCCCCCCCcccCCCcchHHHHhhhccCC
Confidence            99764   444433445558999998875

>PTZ00102 disulphide isomerase; Provisional

Probab=99.67  E-value=3.9e-16  Score=137.27  Aligned_cols=104  Identities=19%  Similarity=0.344  Sum_probs=87.2

Q ss_pred             eEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      +..++.+.+.+ +..++++++|.|||+||++|+.+.|.|+++++.+++ ..+.++.+|++.+...+++++|+++||+++|
T Consensus       359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~  438 (477)
T PTZ00102        359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFV  438 (477)
T ss_pred             eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEE
Confidence            45566644444 468899999999999999999999999999998874 3599999999999999999999999999999


Q ss_pred             eCCCCc-ccccCCCch-hHHHHHHHHhc
Q psy15246         81 KNLKPV-DRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        81 ~~g~~~-~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ++|+.+ .++.|.... +|.++|++++.
T Consensus       439 ~~~~~~~~~~~G~~~~~~l~~~i~~~~~  466 (477)
T PTZ00102        439 KAGERTPIPYEGERTVEGFKEFVNKHAT  466 (477)
T ss_pred             ECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence            988654 356775555 79999999863

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.67  E-value=5.8e-16  Score=108.40  Aligned_cols=87  Identities=22%  Similarity=0.290  Sum_probs=78.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc--cccEEEEEeC--CCCcccccCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS--AVPTFVILKN--LKPVDRVEGA   92 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~--~~Pti~~~~~--g~~~~~~~g~   92 (213)
                      .++++++.|+++||++|+.+.|.++++++++++ ++.|+.||+++++++++.|+|.  ++|+++++++  |+...+..|.
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~   89 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE   89 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence            378999999999999999999999999999997 8999999999999999999999  9999999998  7666666665


Q ss_pred             -CchhHHHHHHHH
Q psy15246         93 -DPESLDKKLQNQ  104 (213)
Q Consensus        93 -~~~~l~~~i~~~  104 (213)
                       +.++|.+|+++.
T Consensus        90 ~~~~~l~~fi~~~  102 (103)
T cd02982          90 LTAESLEEFVEDF  102 (103)
T ss_pred             cCHHHHHHHHHhh
Confidence             455899998875

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.67  E-value=3.7e-16  Score=111.93  Aligned_cols=77  Identities=21%  Similarity=0.353  Sum_probs=65.9

Q ss_pred             hhhhhhc--CCCeEEEEEEc-------CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------chhHHHhCCCc-
Q psy15246         10 LDVEKYG--KDKTAVVHFYA-------DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------LPKLSLNYKVS-   72 (213)
Q Consensus        10 ~~~~~~~--~~~~~vV~F~a-------~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------~~~l~~~~~I~-   72 (213)
                      .+.+.+.  ++++++|.|||       +||++|+.+.|.+++++.++++ ++.|++||+++       +.+++.+++|. 
T Consensus        11 ~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~   89 (119)
T cd02952          11 EFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDPKLTT   89 (119)
T ss_pred             HHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhccCccc
Confidence            3344443  37899999999       9999999999999999999986 79999999976       46999999999 


Q ss_pred             cccEEEEEeCCCCcc
Q psy15246         73 AVPTFVILKNLKPVD   87 (213)
Q Consensus        73 ~~Pti~~~~~g~~~~   87 (213)
                      ++||+++|++|+.+.
T Consensus        90 ~iPT~~~~~~~~~l~  104 (119)
T cd02952          90 GVPTLLRWKTPQRLV  104 (119)
T ss_pred             CCCEEEEEcCCceec
Confidence            999999998776544

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.63  E-value=2.2e-15  Score=101.10  Aligned_cols=79  Identities=22%  Similarity=0.296  Sum_probs=67.9

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCc-hhHHH
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-ESLDK   99 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~-~~l~~   99 (213)
                      .+..||++||++|+.+.|.+++++++++. .+.+..||.+++++++++|++.++||+++  +|+  .+..|..+ ++|.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~   76 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVE   76 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHH
Confidence            36689999999999999999999999876 69999999999999999999999999986  665  25667654 47888


Q ss_pred             HHHHH
Q psy15246        100 KLQNQ  104 (213)
Q Consensus       100 ~i~~~  104 (213)
                      ++++.
T Consensus        77 ~l~~~   81 (82)
T TIGR00411        77 AIKKR   81 (82)
T ss_pred             HHHhh
Confidence            88765

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>KOG0191|consensus

Probab=99.62  E-value=3.9e-15  Score=127.66  Aligned_cols=169  Identities=18%  Similarity=0.313  Sum_probs=116.2

Q ss_pred             eEEeCCchh-hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELD-VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~-~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      +.+++...+ ..+......++|.||+|||+||+.+.|.|++++..+.. ..+.++.+|++.+..++++++|+++||+++|
T Consensus       146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f  225 (383)
T KOG0191|consen  146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLF  225 (383)
T ss_pred             eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEe
Confidence            556666434 44557888999999999999999999999999998863 4799999999999999999999999999999


Q ss_pred             eCCCC-cccccCC-CchhHHHHHHHHhccCCCCCCccccc-CC-----------CcccccchhhhhhhheeccCC-----
Q psy15246         81 KNLKP-VDRVEGA-DPESLDKKLQNQASTMKNQPSNITHV-PY-----------DTFDILQDQEVREGLKIYSNW-----  141 (213)
Q Consensus        81 ~~g~~-~~~~~g~-~~~~l~~~i~~~~~~~kg~p~~~~~~-~~-----------~~f~~l~~~~~~~~v~~~apW-----  141 (213)
                      .+|.. ..++.|. +...|.+|+.+....- ..+...... +.           ..++.. .....++++++++|     
T Consensus       226 ~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~  303 (383)
T KOG0191|consen  226 PPGEEDIYYYSGLRDSDSIVSFVEKKERRN-IPEPELKEIEDKDTFSPTFLDTAEFLDSL-EKKKNKFVKFYAPWCGHCG  303 (383)
T ss_pred             cCCCcccccccccccHHHHHHHHHhhcCCC-CCCcccccccCccccccchhhhhhhhhhh-HHhhhhHhhhhcchhhccc
Confidence            98877 5555554 4458999999886530 000000000 00           001111 12234899999999     


Q ss_pred             ---CCCCCC----------CCceEEeccCCHHHHHHHHhhcCCCcc
Q psy15246        142 ---PTYPQV----------VPYDTFDILQDQEVREGLKIYSNWPTY  174 (213)
Q Consensus       142 ---P~~~~~----------v~~~~~d~~~~~~~~~~l~~~~~~pt~  174 (213)
                         |.++..          +.++.++|.....+++... ..++|++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~  348 (383)
T KOG0191|consen  304 GFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAI-VRGYPTI  348 (383)
T ss_pred             ccchhHHHHHhccccccccceeeccccccccchhhHhh-hhcCcee
Confidence               333222          5667788877655444333 3455655

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.58  E-value=5.6e-15  Score=106.11  Aligned_cols=76  Identities=16%  Similarity=0.243  Sum_probs=59.1

Q ss_pred             hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-hHHHhCCCcc--ccEEEEEe-CCCCcccc
Q psy15246         14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-KLSLNYKVSA--VPTFVILK-NLKPVDRV   89 (213)
Q Consensus        14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-~l~~~~~I~~--~Pti~~~~-~g~~~~~~   89 (213)
                      ...++++++|.|||+||++|+.+.|.+.+....... ...|+.||.+.+. ....+|++.+  +||+++|. +|+.+.+.
T Consensus        15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~   93 (117)
T cd02959          15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEI   93 (117)
T ss_pred             HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhh
Confidence            347789999999999999999999999997665433 3445566666543 4567899987  99999996 89887643


Q ss_pred             c
Q psy15246         90 E   90 (213)
Q Consensus        90 ~   90 (213)
                      .
T Consensus        94 ~   94 (117)
T cd02959          94 I   94 (117)
T ss_pred             c
Confidence            3

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PHA02125 thioredoxin-like protein

Probab=99.57  E-value=1.2e-14  Score=96.25  Aligned_cols=63  Identities=21%  Similarity=0.482  Sum_probs=54.7

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP   94 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~   94 (213)
                      ++.|||+||++|+.+.|.++++.       +.++.||.+++++++++|+|.++||++   +|+.+.+..|...
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~   64 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPR   64 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCC
Confidence            68999999999999999997652       458899999999999999999999987   6777777888754

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.55  E-value=1.4e-14  Score=99.22  Aligned_cols=53  Identities=62%  Similarity=1.130  Sum_probs=51.0

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCch
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLI  200 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~  200 (213)
                      ++|..+|+..+++.++.+++.++.+|+|+|||+|++|||+|++.+||++|+|.
T Consensus        38 i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~~g~L~   90 (90)
T cd03028          38 VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHESGELQ   90 (90)
T ss_pred             CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHHcCCcC
Confidence            79999999999999999999999999999999999999999999999999984

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.53  E-value=6.3e-14  Score=122.45  Aligned_cols=102  Identities=24%  Similarity=0.381  Sum_probs=80.9

Q ss_pred             eEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-C-cEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-S-QVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~-~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +..++...+.+ +...++.++|.|||+||++|+.+.|.++++++.+++ . ++.|+.+|++.+. +.. ++|+++||+++
T Consensus       348 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~  425 (462)
T TIGR01130       348 VKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKF  425 (462)
T ss_pred             cEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEE
Confidence            44555544444 457899999999999999999999999999999986 2 6999999999874 444 99999999999


Q ss_pred             EeCCCCc--ccccC-CCchhHHHHHHHHhc
Q psy15246         80 LKNLKPV--DRVEG-ADPESLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~--~~~~g-~~~~~l~~~i~~~~~  106 (213)
                      |++|...  ..+.| .+.++|.+||.+...
T Consensus       426 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  455 (462)
T TIGR01130       426 VPAGKKSEPVPYDGDRTLEDFSKFIAKHAT  455 (462)
T ss_pred             EeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence            9988642  34455 444589999988853

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.52  E-value=9.8e-14  Score=93.40  Aligned_cols=42  Identities=26%  Similarity=0.406  Sum_probs=36.7

Q ss_pred             HHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhc
Q psy15246        162 REGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL  203 (213)
Q Consensus       162 ~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~  203 (213)
                      ++.+++..+.+++|++|++|+++||+|++.+++++|+|.++|
T Consensus        43 ~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l~~~~   84 (84)
T TIGR02180        43 QDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKLAELL   84 (84)
T ss_pred             HHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCChhhhC
Confidence            344555677889999999999999999999999999999876

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.51  E-value=1e-13  Score=109.96  Aligned_cols=80  Identities=20%  Similarity=0.263  Sum_probs=68.5

Q ss_pred             CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hH
Q psy15246         19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SL   97 (213)
Q Consensus        19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l   97 (213)
                      ...++.||++||++|+.+.+.+++++...+  ++.+..+|.+++++++++|+|.++||++++++|+.   +.|..+. +|
T Consensus       134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l  208 (215)
T TIGR02187       134 PVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQF  208 (215)
T ss_pred             CcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHH
Confidence            344555999999999999999999998865  79999999999999999999999999999988763   5676665 78


Q ss_pred             HHHHHH
Q psy15246         98 DKKLQN  103 (213)
Q Consensus        98 ~~~i~~  103 (213)
                      .++|.+
T Consensus       209 ~~~l~~  214 (215)
T TIGR02187       209 LEYILS  214 (215)
T ss_pred             HHHHHh
Confidence            888764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG1731|consensus

Probab=99.50  E-value=1.9e-14  Score=124.36  Aligned_cols=105  Identities=19%  Similarity=0.327  Sum_probs=79.6

Q ss_pred             ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCC--CchhHHHhCCCccccE
Q psy15246          2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAE--DLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~--~~~~l~~~~~I~~~Pt   76 (213)
                      ++++|+.+.+...+ .+.+-.+|.||++|||||++++|+|+++++.+..  .-+.++.|||-  +|..+|++|+|+++||
T Consensus        40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Pt  119 (606)
T KOG1731|consen   40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPT  119 (606)
T ss_pred             CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCce
Confidence            47788775555554 5556899999999999999999999999998764  35889999996  5889999999999999


Q ss_pred             EEEEeCCCCc----ccccCCCch-hHHHHHHHHhc
Q psy15246         77 FVILKNLKPV----DRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        77 i~~~~~g~~~----~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +.+|..+..-    ....|.... ++...+.+.+.
T Consensus       120 lryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la  154 (606)
T KOG1731|consen  120 LRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA  154 (606)
T ss_pred             eeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence            9999744211    223343433 56666665553

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.50  E-value=7.7e-14  Score=92.52  Aligned_cols=71  Identities=17%  Similarity=0.267  Sum_probs=58.0

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCc--hhHHHH
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP--ESLDKK  100 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~--~~l~~~  100 (213)
                      |.||++||++|+.+.|.++++++++.. .+.+..+|   +.+.+.+|+|.++||+++  +|+.+  ..|..+  ++|.++
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~   74 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI   74 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence            789999999999999999999999986 68888887   345588999999999998  88766  556433  356655


Q ss_pred             H
Q psy15246        101 L  101 (213)
Q Consensus       101 i  101 (213)
                      +
T Consensus        75 l   75 (76)
T TIGR00412        75 L   75 (76)
T ss_pred             h
Confidence            4

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=99.50  E-value=2.5e-14  Score=99.62  Aligned_cols=60  Identities=27%  Similarity=0.502  Sum_probs=53.5

Q ss_pred             CCceEEeccCCHH---HHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCC
Q psy15246        148 VPYDTFDILQDQE---VREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPP  207 (213)
Q Consensus       148 v~~~~~d~~~~~~---~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~  207 (213)
                      ++|..+|++.+++   .++.+.++++++|+|||||+|++|||+|++.+|+++|+|.++|+...
T Consensus        33 i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~~G~L~~~l~~~~   95 (99)
T TIGR02189        33 VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHISGSLVPMLKQAG   95 (99)
T ss_pred             CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHHcCCHHHHHHHhC
Confidence            7889999988744   56678888899999999999999999999999999999999997654

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=99.50  E-value=4.8e-14  Score=104.54  Aligned_cols=62  Identities=24%  Similarity=0.372  Sum_probs=57.6

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCC----CcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCCC
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNW----PTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSS  209 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~----pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~~  209 (213)
                      ++|.++|+..+.+.+++|+++.+.    +|+|||||+|++|||+|++.+||++|+|.++|++.|..
T Consensus        31 V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L~e~G~L~~lL~~~~~~   96 (147)
T cd03031          31 VKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRLNESGELRKLLKGIRAR   96 (147)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHHHHcCCHHHHHhhcccc
Confidence            899999999999999999988764    99999999999999999999999999999999987654

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.49  E-value=1.6e-13  Score=120.47  Aligned_cols=91  Identities=20%  Similarity=0.346  Sum_probs=75.0

Q ss_pred             hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE----------------------------eCCCchhH
Q psy15246         14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC----------------------------IAEDLPKL   65 (213)
Q Consensus        14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v----------------------------d~~~~~~l   65 (213)
                      .++++++++|+|||+||++|+++.|.+++++++++..++.++.|                            +++.+.++
T Consensus        52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l  131 (521)
T PRK14018         52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL  131 (521)
T ss_pred             eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence            35688999999999999999999999999999887435655544                            33456779


Q ss_pred             HHhCCCccccEEEEE-eCCCCcccccCCCch-hHHHHHHHH
Q psy15246         66 SLNYKVSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        66 ~~~~~I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      ++.|+|+++||++++ ++|+.+.+..|..+. +|.++|+..
T Consensus       132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            999999999999766 589999988997776 788888843

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.47  E-value=9.1e-14  Score=98.72  Aligned_cols=85  Identities=28%  Similarity=0.358  Sum_probs=63.4

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHH---HHHHcCCCcEEEEEEeCCCc--------------------hhHHHhCCCc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDE---MSKQSKYSQVVFARCIAEDL--------------------PKLSLNYKVS   72 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~---l~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~I~   72 (213)
                      .+++++++.|+++||++|+++.+.+..   +...+.+ ++.++.++++..                    .+++++++|+
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~   81 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN   81 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence            468999999999999999999998885   4445544 677888887643                    3589999999


Q ss_pred             cccEEEEEe-CCCCcccccCCCch-hHHHHH
Q psy15246         73 AVPTFVILK-NLKPVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        73 ~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i  101 (213)
                      ++||++++. +|+.+.+..|..+. +|.+++
T Consensus        82 gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   82 GTPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            999999996 89988888898776 676654

...

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.47  E-value=3e-13  Score=97.79  Aligned_cols=81  Identities=19%  Similarity=0.111  Sum_probs=64.3

Q ss_pred             hhhhhcCCCeEEEEEEcCCCHHHHhHHHH-H--HHHHHHcCCCcEEEEEEeCCCchhHHHh--------CCCccccEEEE
Q psy15246         11 DVEKYGKDKTAVVHFYADWSDECKHMNTL-F--DEMSKQSKYSQVVFARCIAEDLPKLSLN--------YKVSAVPTFVI   79 (213)
Q Consensus        11 ~~~~~~~~~~~vV~F~a~wC~~C~~~~~~-~--~~l~~~~~~~~v~~~~vd~~~~~~l~~~--------~~I~~~Pti~~   79 (213)
                      ..+..+++++++|.|+|+||+.|+.|.+. |  .++++.+.. ++.++++|.++.++++++        |++.++||+++
T Consensus         8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf   86 (124)
T cd02955           8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF   86 (124)
T ss_pred             HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            34456889999999999999999999873 4  356666544 799999999998888763        58999999999


Q ss_pred             Ee-CCCCcccccCC
Q psy15246         80 LK-NLKPVDRVEGA   92 (213)
Q Consensus        80 ~~-~g~~~~~~~g~   92 (213)
                      +. +|+++...++.
T Consensus        87 l~~~G~~~~~~~~~  100 (124)
T cd02955          87 LTPDLKPFFGGTYF  100 (124)
T ss_pred             ECCCCCEEeeeeec
Confidence            96 78877655443

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PHA03050 glutaredoxin; Provisional

Probab=99.46  E-value=7.7e-14  Score=98.52  Aligned_cols=60  Identities=22%  Similarity=0.357  Sum_probs=54.8

Q ss_pred             CceEEeccC---CHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCC
Q psy15246        149 PYDTFDILQ---DQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPS  208 (213)
Q Consensus       149 ~~~~~d~~~---~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~  208 (213)
                      .|..+|++.   +.+.++++++.+|..|+|+|||+|++|||+|++.+|+++|+|.++|+....
T Consensus        42 ~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~l~~~g~L~~~l~~~~~  104 (108)
T PHA03050         42 AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGV  104 (108)
T ss_pred             CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHHHHHcCCHHHHHHHccc
Confidence            688889986   578899999999999999999999999999999999999999999986543

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.45  E-value=2.2e-13  Score=93.19  Aligned_cols=57  Identities=23%  Similarity=0.335  Sum_probs=53.5

Q ss_pred             CCceEEeccCCHHHHHHHHhhcC----CCcccceEeCCeEeehHHHHHHHHHcCCchhhcc
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSN----WPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD  204 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~----~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~  204 (213)
                      ++|.++|++.+++.++++.+.++    .+|+|||||+|++|||+|++.+|+++|+|.++|+
T Consensus        31 I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~e~g~L~~lLk   91 (92)
T cd03030          31 IEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAKENNTLEEFLK   91 (92)
T ss_pred             CceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHHhCCCHHHHhC
Confidence            89999999999999999998865    4999999999999999999999999999999985

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.44  E-value=6.3e-13  Score=119.11  Aligned_cols=87  Identities=22%  Similarity=0.404  Sum_probs=72.9

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCC----chhHHHhCCCccccEEEEEe-CCCCc-
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAED----LPKLSLNYKVSAVPTFVILK-NLKPV-   86 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~----~~~l~~~~~I~~~Pti~~~~-~g~~~-   86 (213)
                      .++++++|+|||+||++|+.+.+..   .++.+.++  ++.++++|.++    +.+++++|+|.++||+++|+ +|+.+ 
T Consensus       472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~  549 (571)
T PRK00293        472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIP  549 (571)
T ss_pred             hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence            4578999999999999999998875   67777777  68999999985    46899999999999999997 78873 


Q ss_pred             -ccccCCCch-hHHHHHHHH
Q psy15246         87 -DRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        87 -~~~~g~~~~-~l~~~i~~~  104 (213)
                       .+..|.... ++.+++++.
T Consensus       550 ~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        550 DARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             cccccCCCCHHHHHHHHHHh
Confidence             577786554 788888875

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.43  E-value=5.3e-13  Score=86.12  Aligned_cols=59  Identities=22%  Similarity=0.293  Sum_probs=53.4

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLK   84 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~   84 (213)
                      ++.|+++||++|+++.+.++++++..+  ++.+..+|.+++++++++|++.++||+++  +|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~   61 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK   61 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence            678999999999999999999988765  79999999999999999999999999865  454

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR02740 TraF-like TraF-like protein

Probab=99.41  E-value=1.7e-12  Score=106.16  Aligned_cols=88  Identities=11%  Similarity=0.152  Sum_probs=68.2

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------chhHHHhCCCccccEEEEEeC-CCCc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------LPKLSLNYKVSAVPTFVILKN-LKPV   86 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------~~~l~~~~~I~~~Pti~~~~~-g~~~   86 (213)
                      .+++++|.|||+||++|+++.|.++++++++.- .+..+.+|.+.         +..++++++|.++||++++++ |+.+
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~-~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v  243 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI-EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF  243 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc-EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence            478999999999999999999999999999863 34444444321         457899999999999999986 6555


Q ss_pred             cc-ccCCCch-hHHHHHHHHh
Q psy15246         87 DR-VEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        87 ~~-~~g~~~~-~l~~~i~~~~  105 (213)
                      .. ..|..+. +|.+.|....
T Consensus       244 ~~v~~G~~s~~eL~~~i~~~a  264 (271)
T TIGR02740       244 TPIGFGVMSADELVDRILLAA  264 (271)
T ss_pred             EEEEeCCCCHHHHHHHHHHHh
Confidence            43 3476555 7888887765

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.40  E-value=1.6e-12  Score=95.04  Aligned_cols=71  Identities=21%  Similarity=0.359  Sum_probs=58.0

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCc------------------------hhHHHhCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDL------------------------PKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~------------------------~~l~~~~~   70 (213)
                      .+++++|+||++||++|+++.|.+.++.+++.+  .++.++.|+.+..                        ..++++|+
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK   96 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence            578999999999999999999999999888763  2566666665532                        45788999


Q ss_pred             CccccEEEEEe-CCCCcc
Q psy15246         71 VSAVPTFVILK-NLKPVD   87 (213)
Q Consensus        71 I~~~Pti~~~~-~g~~~~   87 (213)
                      |.++|++++++ +|+.+.
T Consensus        97 v~~~P~~~lid~~G~i~~  114 (131)
T cd03009          97 IEGIPTLIILDADGEVVT  114 (131)
T ss_pred             CCCCCEEEEECCCCCEEc
Confidence            99999999997 777554

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.39  E-value=4.2e-12  Score=96.94  Aligned_cols=88  Identities=20%  Similarity=0.353  Sum_probs=73.0

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------CchhHHHhCCCccc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------DLPKLSLNYKVSAV   74 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------~~~~l~~~~~I~~~   74 (213)
                      .+++++|.||++||++|++..+.+.++.+++++.++.++.|+++                      .+.+++++|+|.++
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            57899999999999999999999999999998645888888865                      34578899999999


Q ss_pred             cEEEEEe-CCCCcccccCCCch-hHHHHHHHH
Q psy15246         75 PTFVILK-NLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        75 Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      |+++++. +|+.+....|.... ++.+++++.
T Consensus       140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence            9988886 77777677776665 677777653

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.39  E-value=1.9e-12  Score=94.86  Aligned_cols=71  Identities=24%  Similarity=0.367  Sum_probs=57.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC--cEEEEEEeCCCc-------------------------hhHHHhC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS--QVVFARCIAEDL-------------------------PKLSLNY   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~--~v~~~~vd~~~~-------------------------~~l~~~~   69 (213)
                      ++++++|.||++||++|+...|.++++.+.+++.  ++.++.|+.+..                         ..+++.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            5799999999999999999999999998887752  567777766542                         2466789


Q ss_pred             CCccccEEEEEe-CCCCcc
Q psy15246         70 KVSAVPTFVILK-NLKPVD   87 (213)
Q Consensus        70 ~I~~~Pti~~~~-~g~~~~   87 (213)
                      +|.++||+++++ +|+.+.
T Consensus        96 ~v~~iPt~~lid~~G~iv~  114 (132)
T cd02964          96 KVEGIPTLVVLKPDGDVVT  114 (132)
T ss_pred             CCCCCCEEEEECCCCCEEc
Confidence            999999999997 676554

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.39  E-value=2.1e-12  Score=95.90  Aligned_cols=71  Identities=17%  Similarity=0.294  Sum_probs=57.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-------CcEEEEEEeCCCc-------------------------hh
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-------SQVVFARCIAEDL-------------------------PK   64 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-------~~v~~~~vd~~~~-------------------------~~   64 (213)
                      ++++++|+|||+||++|++..|.+.++.+++.+       .++.++.|+.+.+                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            589999999999999999999999998765542       2478888876522                         24


Q ss_pred             HHHhCCCccccEEEEEe-CCCCcc
Q psy15246         65 LSLNYKVSAVPTFVILK-NLKPVD   87 (213)
Q Consensus        65 l~~~~~I~~~Pti~~~~-~g~~~~   87 (213)
                      ++++|+|.++||.+++. +|+.+.
T Consensus       104 l~~~y~v~~iPt~vlId~~G~Vv~  127 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDVLA  127 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcEEe
Confidence            77899999999999997 777654

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.38  E-value=4.5e-12  Score=94.99  Aligned_cols=89  Identities=18%  Similarity=0.302  Sum_probs=63.3

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------chhHH-HhC---CCccccEEEEE
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------LPKLS-LNY---KVSAVPTFVIL   80 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------~~~l~-~~~---~I~~~Pti~~~   80 (213)
                      ...++..+|+|||+||++|++..|.++++++++.- .+..+.+|-..          ..+.. ..|   ++.++||.+++
T Consensus        47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~-~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI  125 (153)
T TIGR02738        47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL-PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV  125 (153)
T ss_pred             hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcCC-cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence            34567779999999999999999999999998853 34444444221          12333 345   88999999999


Q ss_pred             e-CCCC-cccccCCCch-hHHHHHHHH
Q psy15246         81 K-NLKP-VDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        81 ~-~g~~-~~~~~g~~~~-~l~~~i~~~  104 (213)
                      + +|+. .....|..+. ++.+.|++.
T Consensus       126 D~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       126 NVNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence            7 5554 4456776665 688877765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.38  E-value=3.9e-12  Score=98.54  Aligned_cols=88  Identities=16%  Similarity=0.245  Sum_probs=68.8

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-----------------------hhHHHhCCC
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-----------------------PKLSLNYKV   71 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~I   71 (213)
                      ..++++++|+|||+||++|++..|.+.++.+.    ++.++.|+.++.                       ..+++.|+|
T Consensus        65 ~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv  140 (185)
T PRK15412         65 LTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV  140 (185)
T ss_pred             hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence            34689999999999999999999999998652    466777765432                       235568999


Q ss_pred             ccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         72 SAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        72 ~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      .++|+.++++ +|+...+..|.... ++.+.|+..++
T Consensus       141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~  177 (185)
T PRK15412        141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE  177 (185)
T ss_pred             CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            9999777775 89888888887666 68888887764

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.35  E-value=4e-12  Score=92.34  Aligned_cols=76  Identities=14%  Similarity=0.266  Sum_probs=61.5

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe-----------------------CCCchhHHHhCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI-----------------------AEDLPKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~I~~   73 (213)
                      ++++++|+||++||++|+++.|.++++.+.+.   +.++.|+                       ++.+..+++.|++.+
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~---~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~  100 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR---VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG  100 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC---cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence            57899999999999999999999999988763   4455444                       345667889999999


Q ss_pred             ccEEEEE-eCCCCcccccCCCch
Q psy15246         74 VPTFVIL-KNLKPVDRVEGADPE   95 (213)
Q Consensus        74 ~Pti~~~-~~g~~~~~~~g~~~~   95 (213)
                      +|+.+++ ++|+.+.++.|..++
T Consensus       101 ~P~~~~ld~~G~v~~~~~G~~~~  123 (127)
T cd03010         101 VPETFLIDGDGIIRYKHVGPLTP  123 (127)
T ss_pred             CCeEEEECCCceEEEEEeccCCh
Confidence            9966666 589888888886655

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.34  E-value=1.2e-11  Score=85.21  Aligned_cols=67  Identities=27%  Similarity=0.482  Sum_probs=54.7

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC-CCcEEEEEEeCCCc-------------------------hhHHHhCCC
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDL-------------------------PKLSLNYKV   71 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~-~~~v~~~~vd~~~~-------------------------~~l~~~~~I   71 (213)
                      +++++|+|||+||++|++..|.+.++.+.++ +.++.++.|..++.                         ..+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            5899999999999999999999999999999 34788888887632                         347889999


Q ss_pred             ccccEEEEEe-CCC
Q psy15246         72 SAVPTFVILK-NLK   84 (213)
Q Consensus        72 ~~~Pti~~~~-~g~   84 (213)
                      .++|+++++. +|+
T Consensus        81 ~~iP~~~lld~~G~   94 (95)
T PF13905_consen   81 NGIPTLVLLDPDGK   94 (95)
T ss_dssp             TSSSEEEEEETTSB
T ss_pred             CcCCEEEEECCCCC
Confidence            9999999997 443

...

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.34  E-value=6.4e-12  Score=90.58  Aligned_cols=81  Identities=22%  Similarity=0.301  Sum_probs=63.0

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe---------------------CCCchhHHHhCCCccc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI---------------------AEDLPKLSLNYKVSAV   74 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd---------------------~~~~~~l~~~~~I~~~   74 (213)
                      ..+++++|.||++||++|+.+.|.+.++++.+.   +..+.+|                     .+.+.+++++|+|.++
T Consensus        18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~   94 (123)
T cd03011          18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT   94 (123)
T ss_pred             hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc
Confidence            456899999999999999999999999988754   2222222                     2355689999999999


Q ss_pred             cEEEEEeCCCCcccccCCCch-hHHH
Q psy15246         75 PTFVILKNLKPVDRVEGADPE-SLDK   99 (213)
Q Consensus        75 Pti~~~~~g~~~~~~~g~~~~-~l~~   99 (213)
                      |+++++.+|+......|..+. +|.+
T Consensus        95 P~~~vid~~gi~~~~~g~~~~~~~~~  120 (123)
T cd03011          95 PAIVIVDPGGIVFVTTGVTSEWGLRL  120 (123)
T ss_pred             cEEEEEcCCCeEEEEeccCCHHHHHh
Confidence            999999866666777787766 4554

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.34  E-value=3.1e-12  Score=85.30  Aligned_cols=56  Identities=27%  Similarity=0.424  Sum_probs=53.4

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhc
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL  203 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~  203 (213)
                      +.|..+|++.+++.++++.+.++++++|+|||+|+++||++++.+++++|+|.++|
T Consensus        24 i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~~l   79 (79)
T TIGR02181        24 VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDPLL   79 (79)
T ss_pred             CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhhhC
Confidence            78999999999999999998999999999999999999999999999999999876

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.34  E-value=1.3e-11  Score=89.54  Aligned_cols=96  Identities=11%  Similarity=0.064  Sum_probs=81.0

Q ss_pred             hhhhhcCCCeEEEEEEc--CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccc
Q psy15246         11 DVEKYGKDKTAVVHFYA--DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDR   88 (213)
Q Consensus        11 ~~~~~~~~~~~vV~F~a--~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~   88 (213)
                      ....++..+..+|.|-.  .-++.+....-.+++++++|++.++.+++||++++++++.+|||+++||+++|++|+.+.+
T Consensus        27 ~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~  106 (132)
T PRK11509         27 LDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGV  106 (132)
T ss_pred             HHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEE
Confidence            33445666666666654  3567888888899999999985359999999999999999999999999999999999999


Q ss_pred             ccCCCch-hHHHHHHHHhc
Q psy15246         89 VEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        89 ~~g~~~~-~l~~~i~~~~~  106 (213)
                      ..|..+. ++.++|++++.
T Consensus       107 i~G~~~k~~l~~~I~~~L~  125 (132)
T PRK11509        107 LNGIHPWAELINLMRGLVE  125 (132)
T ss_pred             EeCcCCHHHHHHHHHHHhc
Confidence            9998776 79999999875

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.34  E-value=1e-11  Score=95.25  Aligned_cols=88  Identities=16%  Similarity=0.268  Sum_probs=68.6

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-----------------------CCchhHHHhCCC
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-----------------------EDLPKLSLNYKV   71 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~I   71 (213)
                      ..++++++|+||++||++|+++.|.++++.+.    ++.++.|+.                       +.+.+++++|++
T Consensus        60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v  135 (173)
T TIGR00385        60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV  135 (173)
T ss_pred             hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence            34689999999999999999999999988763    344444443                       344567889999


Q ss_pred             ccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         72 SAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        72 ~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      .++|+.+++ ++|+.+.++.|.... ++.++++++++
T Consensus       136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence            999976666 589988888886555 78999888764

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.33  E-value=8.6e-12  Score=87.71  Aligned_cols=75  Identities=24%  Similarity=0.406  Sum_probs=65.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-----------------------hhHHHhCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-----------------------PKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~I~~   73 (213)
                      .+++++|.||++||++|+...+.+.++.+.+...++.++.|+++.+                       ..+++.|++.+
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG   97 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence            3789999999999999999999999999999643799999999886                       78999999999


Q ss_pred             ccEEEEEe-CCCCcccccC
Q psy15246         74 VPTFVILK-NLKPVDRVEG   91 (213)
Q Consensus        74 ~Pti~~~~-~g~~~~~~~g   91 (213)
                      +|+++++. +|+.+.++.|
T Consensus        98 ~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          98 LPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             cceEEEECCCCcEEEEecC
Confidence            99999996 7776665543

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK10638 glutaredoxin 3; Provisional

Probab=99.31  E-value=6.3e-12  Score=84.72  Aligned_cols=57  Identities=30%  Similarity=0.439  Sum_probs=53.8

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhcc
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD  204 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~  204 (213)
                      ++|..+|++.+++.++.+.+.+++.++|+||++|+++||+|++++|+++|+|.++|+
T Consensus        27 i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l~~~~~   83 (83)
T PRK10638         27 VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLK   83 (83)
T ss_pred             CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCHHHHhC
Confidence            789999999988888899999999999999999999999999999999999999874

>KOG1752|consensus

Probab=99.30  E-value=5.4e-12  Score=87.93  Aligned_cols=56  Identities=27%  Similarity=0.482  Sum_probs=48.8

Q ss_pred             eEEeccCC-HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCC
Q psy15246        151 DTFDILQD-QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQP  206 (213)
Q Consensus       151 ~~~d~~~~-~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~  206 (213)
                      .++|-..+ .+++..|.+.++.+|+|++||+|+||||++++.+||.+|+|.++|+..
T Consensus        44 vELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~~G~L~~~l~~~  100 (104)
T KOG1752|consen   44 VELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHKSGELVPLLKEA  100 (104)
T ss_pred             EEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHHcCCHHHHHHHh
Confidence            34444444 689999999999999999999999999999999999999999999754

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.30  E-value=1.3e-11  Score=84.17  Aligned_cols=67  Identities=7%  Similarity=0.062  Sum_probs=59.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD   87 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~   87 (213)
                      .+..-+..|+++||++|....+.++++++.++  ++.+..+|.++.++++.+|+|.++||+++  +|+.+.
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~   77 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG   77 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE
Confidence            34556888999999999999999999999887  79999999999999999999999999964  787554

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.30  E-value=1.3e-11  Score=117.46  Aligned_cols=90  Identities=20%  Similarity=0.273  Sum_probs=75.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC---------------------------CCchhHHHhC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA---------------------------EDLPKLSLNY   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~~   69 (213)
                      ++++++|+|||+||++|++..|.++++.+++++.++.++.|..                           +.+..+.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            5899999999999999999999999999999864577777732                           2244678899


Q ss_pred             CCccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         70 KVSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        70 ~I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|.++|+++++ ++|+.+.+..|.... +|.++|+..+.
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence            99999999999 599998888887665 68888887764

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.29  E-value=3.2e-11  Score=81.61  Aligned_cols=40  Identities=15%  Similarity=0.122  Sum_probs=31.8

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      -++.|+.+||++|++....++++..++.  ++.+..+|.+++
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~~   41 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHAE   41 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECCCC
Confidence            3678999999999999999999887665  577777776653

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.24  E-value=5.4e-11  Score=86.38  Aligned_cols=75  Identities=12%  Similarity=0.147  Sum_probs=62.0

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------------CchhHHHhC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------------DLPKLSLNY   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~~   69 (213)
                      ++++++|.||++||++|++..|.++++.+++++.++.++.|+.+                           ....+++.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            67899999999999999999999999999998656888877541                           233567889


Q ss_pred             CCccccEEEEEe-CCCCcccccC
Q psy15246         70 KVSAVPTFVILK-NLKPVDRVEG   91 (213)
Q Consensus        70 ~I~~~Pti~~~~-~g~~~~~~~g   91 (213)
                      ++.++|+++++. +|+.+....|
T Consensus       102 ~v~~~P~~~vid~~G~v~~~~~G  124 (126)
T cd03012         102 GNQYWPALYLIDPTGNVRHVHFG  124 (126)
T ss_pred             CCCcCCeEEEECCCCcEEEEEec
Confidence            999999999995 7877766655

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.23  E-value=6.1e-11  Score=80.43  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=25.0

Q ss_pred             CcccceEeCCeEeehHHHHHHHHHcCC
Q psy15246        172 PTYPQVYVNTELIGGLDIIKELQVANK  198 (213)
Q Consensus       172 pt~p~i~i~g~~~gg~d~~~~~~~~~~  198 (213)
                      .|+|+|||+|+++||+|++.++++++.
T Consensus        56 ~tVP~ifi~g~~igG~~dl~~~~~~~~   82 (86)
T TIGR02183        56 ETVPQIFVDEKHVGGCTDFEQLVKENF   82 (86)
T ss_pred             CCcCeEEECCEEecCHHHHHHHHHhcc
Confidence            689999999999999999999998863

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.20  E-value=1.6e-10  Score=82.48  Aligned_cols=90  Identities=16%  Similarity=0.217  Sum_probs=74.0

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHH-HH--HHHHHHcCCCcEEEEEEeCC--CchhHHHhCCCccccEEEEEe--CCCCcc
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNT-LF--DEMSKQSKYSQVVFARCIAE--DLPKLSLNYKVSAVPTFVILK--NLKPVD   87 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~-~~--~~l~~~~~~~~v~~~~vd~~--~~~~l~~~~~I~~~Pti~~~~--~g~~~~   87 (213)
                      .+++++++|+|+++||++|+.|.. .|  +++.+.+.. +..+..+|.+  +...+++.|++.++|+++++.  +|+.+.
T Consensus        14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~   92 (114)
T cd02958          14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK   92 (114)
T ss_pred             HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence            467899999999999999999976 34  445666654 6888888887  466899999999999999996  588899


Q ss_pred             cccCCCch-hHHHHHHHHh
Q psy15246         88 RVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        88 ~~~g~~~~-~l~~~i~~~~  105 (213)
                      +..|.... ++...|++..
T Consensus        93 ~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          93 VWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             EEcCCCCHHHHHHHHHHHH
Confidence            99998776 6888887764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.15  E-value=5.1e-11  Score=79.74  Aligned_cols=55  Identities=25%  Similarity=0.410  Sum_probs=47.3

Q ss_pred             CCceEEeccCC---HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhh
Q psy15246        148 VPYDTFDILQD---QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPT  202 (213)
Q Consensus       148 v~~~~~d~~~~---~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~  202 (213)
                      +.|..+++..+   .+++..++++++++++|++|++|+++||++++.++.++|+|.++
T Consensus        25 ~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~~~   82 (82)
T cd03419          25 VKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLVKL   82 (82)
T ss_pred             CCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCccCC
Confidence            56666666654   55677898999999999999999999999999999999999864

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.14  E-value=3.9e-10  Score=86.26  Aligned_cols=82  Identities=13%  Similarity=0.228  Sum_probs=62.7

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------chhHHHhCCC--ccccEEEEEe-CCCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------LPKLSLNYKV--SAVPTFVILK-NLKP   85 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------~~~l~~~~~I--~~~Pti~~~~-~g~~   85 (213)
                      +|.||++||++|++..|.+++++++++   +.++.|+.+.             ...+.+.|++  .++||.++++ +|+.
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i  149 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLE  149 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcE
Confidence            778999999999999999999999986   4444444432             2336778995  6999999995 7776


Q ss_pred             c-ccccCCCch-hHHHHHHHHhc
Q psy15246         86 V-DRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        86 ~-~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      . ....|..+. +|.+.|++.++
T Consensus       150 ~~~~~~G~~~~~~L~~~I~~ll~  172 (181)
T PRK13728        150 ALPLLQGATDAAGFMARMDTVLQ  172 (181)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHh
Confidence            4 456676665 78888888874

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.14  E-value=3.2e-10  Score=84.17  Aligned_cols=79  Identities=27%  Similarity=0.409  Sum_probs=64.7

Q ss_pred             cCCCeEEEEEEcC-CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCc-
Q psy15246         16 GKDKTAVVHFYAD-WSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVS-   72 (213)
Q Consensus        16 ~~~~~~vV~F~a~-wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~-   72 (213)
                      -++++++|.||++ ||++|+...|.+.++.+.+++.++.++.|..+                     ....+.++|++. 
T Consensus        26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  105 (146)
T PF08534_consen   26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI  105 (146)
T ss_dssp             GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred             hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence            4689999999999 99999999999999998877546777777644                     345688999998 


Q ss_pred             --------cccEEEEEe-CCCCcccccCCCc
Q psy15246         73 --------AVPTFVILK-NLKPVDRVEGADP   94 (213)
Q Consensus        73 --------~~Pti~~~~-~g~~~~~~~g~~~   94 (213)
                              ++|+++++. +|+.+.+..|...
T Consensus       106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence                    999988775 8887777777655

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.14  E-value=1.9e-10  Score=83.33  Aligned_cols=77  Identities=14%  Similarity=0.159  Sum_probs=54.0

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe-CCCCccccc
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK-NLKPVDRVE   90 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~-~g~~~~~~~   90 (213)
                      -+++++++|.|+++||++|+.|....   .++.+.... ++.++.++.+....-....+ .++||++|+. +|+.+.+..
T Consensus        20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i~   97 (130)
T cd02960          20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADIT   97 (130)
T ss_pred             HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCccccc
Confidence            47899999999999999999998864   334454533 56666777652211111234 6899999996 788887777


Q ss_pred             CCC
Q psy15246         91 GAD   93 (213)
Q Consensus        91 g~~   93 (213)
                      |..
T Consensus        98 Gy~  100 (130)
T cd02960          98 GRY  100 (130)
T ss_pred             ccc
Confidence            754

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.13  E-value=1e-10  Score=83.10  Aligned_cols=60  Identities=8%  Similarity=0.165  Sum_probs=44.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE---eCCCchhHHHhCCCccccEE
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC---IAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v---d~~~~~~l~~~~~I~~~Pti   77 (213)
                      ++++++|.||++||++|+++.|.++++.+.+.+ ++.++.+   +.++..++++++++..+|++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~   82 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYV   82 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence            478999999999999999999999999888865 5666655   22233345556666556654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.13  E-value=4.8e-11  Score=78.35  Aligned_cols=48  Identities=29%  Similarity=0.465  Sum_probs=45.3

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQV  195 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~  195 (213)
                      ++|..+|+..+++.++++++.++..++|++|+||++|||+|++++|++
T Consensus        26 i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~   73 (73)
T cd03027          26 LPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE   73 (73)
T ss_pred             CceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence            899999999999999999999999999999999999999999999864

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.11  E-value=2.1e-10  Score=75.48  Aligned_cols=50  Identities=30%  Similarity=0.435  Sum_probs=46.3

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCC-cccceEeCCeEeehHHHHHHHHHcC
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWP-TYPQVYVNTELIGGLDIIKELQVAN  197 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~p-t~p~i~i~g~~~gg~d~~~~~~~~~  197 (213)
                      ++|..+|++.+++.++.+.+..+++ ++|+||++|+++||+|++.+|+++|
T Consensus        25 i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g   75 (75)
T cd03418          25 VDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG   75 (75)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence            8999999999988888888778877 9999999999999999999999987

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.09  E-value=4.3e-10  Score=88.08  Aligned_cols=90  Identities=14%  Similarity=0.097  Sum_probs=67.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-----------CchhHHHhCCC--------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-----------DLPKLSLNYKV--------------   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~I--------------   71 (213)
                      .+++++|.|||+||++|++..|.+.++.+++++.++.++.|+++           +....++++++              
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~  117 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN  117 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence            57899999999999999999999999999998656899999763           12234444443              


Q ss_pred             ----------------------cccc---EEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         72 ----------------------SAVP---TFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        72 ----------------------~~~P---ti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                                            .++|   +..++ ++|+.+.++.|.... ++.+.|+++++
T Consensus       118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~  179 (199)
T PTZ00056        118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG  179 (199)
T ss_pred             cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                  1122   33344 688888888886665 78888888875

>KOG0914|consensus

Probab=99.08  E-value=2.3e-10  Score=88.23  Aligned_cols=85  Identities=24%  Similarity=0.529  Sum_probs=73.3

Q ss_pred             chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc------cccEEEEE
Q psy15246          9 ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS------AVPTFVIL   80 (213)
Q Consensus         9 ~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~------~~Pti~~~   80 (213)
                      +..++.+  +....|+|.|+|.|.+.|+.+.|.+.+++.+|....+.|++||+..-++.+.+|+|.      ..||+++|
T Consensus       133 q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilF  212 (265)
T KOG0914|consen  133 QLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILF  212 (265)
T ss_pred             hhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEE
Confidence            3334444  567789999999999999999999999999999768999999999999999999886      58999999


Q ss_pred             eCCCCcccccCCC
Q psy15246         81 KNLKPVDRVEGAD   93 (213)
Q Consensus        81 ~~g~~~~~~~g~~   93 (213)
                      .+|+++.|....+
T Consensus       213 q~gkE~~RrP~vd  225 (265)
T KOG0914|consen  213 QKGKEVSRRPDVD  225 (265)
T ss_pred             ccchhhhcCcccc
Confidence            9999887765443

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.07  E-value=1.1e-09  Score=85.24  Aligned_cols=86  Identities=15%  Similarity=0.255  Sum_probs=60.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC------------------CCchhHHHhCCCccccEEE
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA------------------EDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~------------------~~~~~l~~~~~I~~~Pti~   78 (213)
                      .+++++|.||++||++|++..|.+.++.+.... ++.++..|.                  ....++++.|++.++|+.+
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~-~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~  151 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET-DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV  151 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC-cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence            678999999999999999999999998876542 455444220                  1145678899999999888


Q ss_pred             EEe-CCCCcccccCCCc-hhHHHHHHHH
Q psy15246         79 ILK-NLKPVDRVEGADP-ESLDKKLQNQ  104 (213)
Q Consensus        79 ~~~-~g~~~~~~~g~~~-~~l~~~i~~~  104 (213)
                      +++ +|+...+ ..... +.+.+.++..
T Consensus       152 lID~~G~I~~~-g~~~~~~~le~ll~~l  178 (189)
T TIGR02661       152 LLDQDGKIRAK-GLTNTREHLESLLEAD  178 (189)
T ss_pred             EECCCCeEEEc-cCCCCHHHHHHHHHHH
Confidence            876 7765543 22233 3566666544

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.06  E-value=2.4e-10  Score=76.71  Aligned_cols=66  Identities=23%  Similarity=0.344  Sum_probs=50.9

Q ss_pred             hhcCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246         14 KYGKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus        14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      ..+++++++|.|+++||++|+.|...+   .++.+.+.. ++.++.+|.+......... ..++|+++++.
T Consensus        13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~~~~~~~~-~~~~P~~~~ld   81 (82)
T PF13899_consen   13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDEDPNAQFD-RQGYPTFFFLD   81 (82)
T ss_dssp             HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTHHHHHHHH-HCSSSEEEEEE
T ss_pred             HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCCChhHHhC-CccCCEEEEeC
Confidence            347899999999999999999999877   445553443 7999999998765544322 27799999985

...

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.05  E-value=3.3e-09  Score=80.96  Aligned_cols=93  Identities=18%  Similarity=0.272  Sum_probs=71.5

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-----------------------------chhH
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-----------------------------LPKL   65 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-----------------------------~~~l   65 (213)
                      +..++++||.||++||+.|.+..+.+.++.+++++.++.++.|..+.                             +..+
T Consensus        22 ~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~  101 (171)
T cd02969          22 FADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV  101 (171)
T ss_pred             HhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence            44789999999999999999999999999999985468888887643                             2346


Q ss_pred             HHhCCCccccEEEEEe-CCCCcccc------cC----CCchhHHHHHHHHhcc
Q psy15246         66 SLNYKVSAVPTFVILK-NLKPVDRV------EG----ADPESLDKKLQNQAST  107 (213)
Q Consensus        66 ~~~~~I~~~Pti~~~~-~g~~~~~~------~g----~~~~~l~~~i~~~~~~  107 (213)
                      ++.|+|...|+++++. +|+.+...      .+    .+..++.+.|+..+..
T Consensus       102 ~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  154 (171)
T cd02969         102 AKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG  154 (171)
T ss_pred             HHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence            7789999999999996 67655331      11    1224689999888753

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.03  E-value=1.7e-09  Score=86.53  Aligned_cols=90  Identities=12%  Similarity=0.089  Sum_probs=67.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--------c---hhHH-HhCC--------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--------L---PKLS-LNYK--------------   70 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--------~---~~l~-~~~~--------------   70 (213)
                      .+++++|.|||+||++|....|.++++.+++++.++.++.|+++.        .   .+.+ ++++              
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            578999999999999999999999999999986568888888631        1   1222 2221              


Q ss_pred             --------------------CccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         71 --------------------VSAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        71 --------------------I~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                                          |...|+..++. +|+.+.++.|.... +|++.|+++++
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence                                12347777774 88988888887665 78888888764

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.03  E-value=1.7e-09  Score=75.61  Aligned_cols=73  Identities=27%  Similarity=0.576  Sum_probs=65.5

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-CchhHHHhCC--CccccEEEEEeCCCCcccccC
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-DLPKLSLNYK--VSAVPTFVILKNLKPVDRVEG   91 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-~~~~l~~~~~--I~~~Pti~~~~~g~~~~~~~g   91 (213)
                      ++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. ...++...|+  +..+|++.++.+|.......+
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  107 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG  107 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence            77999999999999999999999999999986 6899999997 8899999999  999999999988876555555

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.98  E-value=1.8e-09  Score=70.22  Aligned_cols=68  Identities=28%  Similarity=0.403  Sum_probs=53.3

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCccccEEEEEeCCCCcccccCCCchhH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSAVPTFVILKNLKPVDRVEGADPESL   97 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l   97 (213)
                      +..|+++||++|+++.+.+++     .  ++.+..+|++.+++    +.+.+++.++|++++.  |+.   ..|.++++|
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-----~--~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i   69 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-----K--GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKL   69 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-----C--CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHH
Confidence            467999999999999988876     2  57788889887654    5567999999999874  543   667777777


Q ss_pred             HHHH
Q psy15246         98 DKKL  101 (213)
Q Consensus        98 ~~~i  101 (213)
                      .++|
T Consensus        70 ~~~i   73 (74)
T TIGR02196        70 DQLL   73 (74)
T ss_pred             HHHh
Confidence            7765

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.97  E-value=2.5e-09  Score=93.85  Aligned_cols=91  Identities=19%  Similarity=0.310  Sum_probs=71.8

Q ss_pred             hhhhcCCC--eEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCc----hhHHHhCCCccccEEEEEe-
Q psy15246         12 VEKYGKDK--TAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDL----PKLSLNYKVSAVPTFVILK-   81 (213)
Q Consensus        12 ~~~~~~~~--~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~----~~l~~~~~I~~~Pti~~~~-   81 (213)
                      ++.+++++  +++|+|||+||-.||.+.+..   .+...+.+  ++.+.++|.+++    .++.++|++-++|++++|. 
T Consensus       466 ~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~--~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~  543 (569)
T COG4232         466 DQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ--DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGP  543 (569)
T ss_pred             HHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC--CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence            33444454  999999999999999998854   23444555  799999998864    4688999999999999998 


Q ss_pred             CCCCcccccCCCch-hHHHHHHHH
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      +|++.....|+... .+.+++++.
T Consensus       544 ~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         544 QGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCCcCcCCcceecHHHHHHHHHHh
Confidence            77776668887777 588888765

>smart00594 UAS UAS domain

Probab=98.97  E-value=5e-09  Score=75.69  Aligned_cols=86  Identities=16%  Similarity=0.159  Sum_probs=65.6

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHH-H--HHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCccccEEEEEe-CC-----
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTL-F--DEMSKQSKYSQVVFARCIAED--LPKLSLNYKVSAVPTFVILK-NL-----   83 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~-~--~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~~~~-~g-----   83 (213)
                      .+.+|+++|+|+++||+.|+.+... |  .++.+.+.. ++.+..+|.+.  ..+++++|++.++|+++++. +|     
T Consensus        24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~  102 (122)
T smart00594       24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVI  102 (122)
T ss_pred             HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeE
Confidence            3678899999999999999999875 3  445555654 68888888764  56799999999999999996 44     


Q ss_pred             CCcccccCCCch-hHHHHH
Q psy15246         84 KPVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        84 ~~~~~~~g~~~~-~l~~~i  101 (213)
                      ..+.+..|.... +|...+
T Consensus       103 ~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      103 EWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEeccccCCCCHHHHHHhh
Confidence            246677786665 566554

>PLN02412 probable glutathione peroxidase

Probab=98.96  E-value=4.2e-09  Score=80.25  Aligned_cols=90  Identities=14%  Similarity=0.089  Sum_probs=65.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--------CchhH----HHhCC--------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE--------DLPKL----SLNYK--------------   70 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--------~~~~l----~~~~~--------------   70 (213)
                      .+++++|.||++||++|++..|.+.++.+++++.++.++.|+++        ...++    +++++              
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~  107 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK  107 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence            57899999999999999999999999999999756888888763        11122    22222              


Q ss_pred             --------------------CccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         71 --------------------VSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        71 --------------------I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                                          |...|+..++ ++|+.+.++.|.... ++...|+.+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                3335666666 477777777776655 67777777764

>KOG1672|consensus

Probab=98.96  E-value=1.4e-09  Score=82.62  Aligned_cols=91  Identities=26%  Similarity=0.359  Sum_probs=80.7

Q ss_pred             ceEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      ...++.+ ..+++...+...++++||-|.-..|+-|...++.||+.+-  ...|++||+...|=++.+++|..+|++++|
T Consensus        67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~PFlv~kL~IkVLP~v~l~  144 (211)
T KOG1672|consen   67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKAPFLVTKLNIKVLPTVALF  144 (211)
T ss_pred             eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEecccCceeeeeeeeeEeeeEEEE
Confidence            3456665 4455666788899999999999999999999999999999  699999999999999999999999999999


Q ss_pred             eCCCCcccccCCCc
Q psy15246         81 KNLKPVDRVEGADP   94 (213)
Q Consensus        81 ~~g~~~~~~~g~~~   94 (213)
                      ++|+...++.|+..
T Consensus       145 k~g~~~D~iVGF~d  158 (211)
T KOG1672|consen  145 KNGKTVDYVVGFTD  158 (211)
T ss_pred             EcCEEEEEEeeHhh
Confidence            99999988888653

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.96  E-value=2.5e-09  Score=86.97  Aligned_cols=99  Identities=25%  Similarity=0.355  Sum_probs=73.2

Q ss_pred             eEEeCC-chhhhhhc---CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          3 VVQISE-ELDVEKYG---KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         3 v~~l~~-~~~~~~~~---~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      |.+|++ +.+.+.+.   .+..|||+||.+.++.|..|...|..||..|+  .++|++|.++..+ +..+|.+..+||++
T Consensus       127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~~~-~~~~f~~~~LPtll  203 (265)
T PF02114_consen  127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--EVKFVKIRASKCP-ASENFPDKNLPTLL  203 (265)
T ss_dssp             EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred             EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhccC-cccCCcccCCCEEE
Confidence            567766 55555553   35579999999999999999999999999999  7999999998765 78899999999999


Q ss_pred             EEeCCCCcccccCCC--------chhHHHHHHHH
Q psy15246         79 ILKNLKPVDRVEGAD--------PESLDKKLQNQ  104 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~--------~~~l~~~i~~~  104 (213)
                      +|++|..+..+.|..        ..+|..+|.++
T Consensus       204 vYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  204 VYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             EEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             EEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            999997666554432        22566666654

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.7e-09  Score=72.22  Aligned_cols=52  Identities=33%  Similarity=0.532  Sum_probs=46.7

Q ss_pred             CCceEEeccCCH--HHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCc
Q psy15246        148 VPYDTFDILQDQ--EVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL  199 (213)
Q Consensus       148 v~~~~~d~~~~~--~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l  199 (213)
                      +.|..+|+..+.  +.+..+++.+|..|+|||||+|+++||++++.++++.|.|
T Consensus        26 ~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l   79 (80)
T COG0695          26 VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL   79 (80)
T ss_pred             CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence            799999999886  6667777777999999999999999999999999999876

>KOG2824|consensus

Probab=98.91  E-value=1.2e-09  Score=87.24  Aligned_cols=70  Identities=31%  Similarity=0.404  Sum_probs=60.8

Q ss_pred             hhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhcC----CCcccceEeCCeEeehHHHHHHHHHcCCchhhccCC
Q psy15246        131 VREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSN----WPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQP  206 (213)
Q Consensus       131 ~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~~----~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~  206 (213)
                      +|.++..|.        |.|.+-|+..|...+++|++..+    .+++|++||+|.+|||.+++.+|++.|+|.++|++.
T Consensus       153 VR~ilesf~--------V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~LnE~GkL~~lL~~~  224 (281)
T KOG2824|consen  153 VRAILESFR--------VKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRLNEEGKLGKLLKGI  224 (281)
T ss_pred             HHHHHHhCc--------eEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhhhhcchHHHHHhcC
Confidence            455665554        89999999999888888887654    588999999999999999999999999999999999


Q ss_pred             CC
Q psy15246        207 PS  208 (213)
Q Consensus       207 ~~  208 (213)
                      |-
T Consensus       225 p~  226 (281)
T KOG2824|consen  225 PC  226 (281)
T ss_pred             CC
Confidence            83

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.91  E-value=6.3e-09  Score=68.47  Aligned_cols=70  Identities=14%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHh-----CCCccccEEEEEeCCCCcccccCCCchh
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLN-----YKVSAVPTFVILKNLKPVDRVEGADPES   96 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~-----~~I~~~Pti~~~~~g~~~~~~~g~~~~~   96 (213)
                      ++.||++||++|+++++.++++       ++.+-.+|+++++.....     +++.++|++ ++.+|+.+.   .....+
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~   70 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQ   70 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHH
Confidence            5689999999999999998775       344556888877766655     389999997 577776433   444445


Q ss_pred             HHHHHH
Q psy15246         97 LDKKLQ  102 (213)
Q Consensus        97 l~~~i~  102 (213)
                      +.+.++
T Consensus        71 ~~~~l~   76 (77)
T TIGR02200        71 VKAKLQ   76 (77)
T ss_pred             HHHHhh
Confidence            655543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.85  E-value=1.7e-08  Score=62.68  Aligned_cols=60  Identities=28%  Similarity=0.514  Sum_probs=51.3

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHH---hCCCccccEEEEEeCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL---NYKVSAVPTFVILKNL   83 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~---~~~I~~~Pti~~~~~g   83 (213)
                      ++.||++||++|+++.+.+.++ +.... ++.+..+|++...+...   .+++.++|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNK-GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCC-CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999998 33333 79999999998877665   8999999999999877

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>KOG0913|consensus

Probab=98.85  E-value=1.2e-09  Score=85.19  Aligned_cols=99  Identities=20%  Similarity=0.203  Sum_probs=81.4

Q ss_pred             EEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC
Q psy15246          4 VQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL   83 (213)
Q Consensus         4 ~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g   83 (213)
                      +.+++++..+.+  .+-+++.|+|||||.|+...|.|+.++.--.+..|.++.||.+.++.+.-+|-|...|||.-.++|
T Consensus        27 ~~~~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG  104 (248)
T KOG0913|consen   27 TRIDEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG  104 (248)
T ss_pred             EEecccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc
Confidence            455565555543  467899999999999999999999998876666799999999999999999999999999999999


Q ss_pred             CCcccccCCCchhHHHHHHHH
Q psy15246         84 KPVDRVEGADPESLDKKLQNQ  104 (213)
Q Consensus        84 ~~~~~~~g~~~~~l~~~i~~~  104 (213)
                      ..-.+.+.++..++..|+...
T Consensus       105 eFrrysgaRdk~dfisf~~~r  125 (248)
T KOG0913|consen  105 EFRRYSGARDKNDFISFEEHR  125 (248)
T ss_pred             ccccccCcccchhHHHHHHhh
Confidence            865544445555888888754

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.83  E-value=1.2e-08  Score=78.57  Aligned_cols=83  Identities=18%  Similarity=0.154  Sum_probs=59.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHH-cCCCcE-EEEEEeCC-----------------------------CchhH
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQ-SKYSQV-VFARCIAE-----------------------------DLPKL   65 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~-~~~~~v-~~~~vd~~-----------------------------~~~~l   65 (213)
                      .++..+|+|||.||++|+.-.|.++++.++ ++-++. ....||.+                             ....+
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v  137 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV  137 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence            489999999999999999999999999653 331010 01334433                             23346


Q ss_pred             HHhCCCccccEE-EEE-eCCCCcccccCCCch-hHHH
Q psy15246         66 SLNYKVSAVPTF-VIL-KNLKPVDRVEGADPE-SLDK   99 (213)
Q Consensus        66 ~~~~~I~~~Pti-~~~-~~g~~~~~~~g~~~~-~l~~   99 (213)
                      +.+|++.++|+. +++ ++|+...+..|.... ++.+
T Consensus       138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT  174 (184)
T ss_pred             HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence            779999999876 566 488988888897655 5555

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=4.3e-08  Score=72.08  Aligned_cols=87  Identities=17%  Similarity=0.209  Sum_probs=69.4

Q ss_pred             hhcCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCC----------------CchhHHHhCCCccc
Q psy15246         14 KYGKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAE----------------DLPKLSLNYKVSAV   74 (213)
Q Consensus        14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~----------------~~~~l~~~~~I~~~   74 (213)
                      +...++..++.|.++.|+.|.+++..+   .++.+.+.+ ++.++.+++.                ...++++.|+|+++
T Consensus        38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst  116 (182)
T COG2143          38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST  116 (182)
T ss_pred             cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence            346789999999999999999998865   456666665 6778888754                23489999999999


Q ss_pred             cEEEEEe-CCCCcccccCCCch-hHHHHH
Q psy15246         75 PTFVILK-NLKPVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        75 Pti~~~~-~g~~~~~~~g~~~~-~l~~~i  101 (213)
                      ||+++|+ +|+.+....|+.+. ++...+
T Consensus       117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vl  145 (182)
T COG2143         117 PTFVFFDKTGKTILELPGYMPPEQFLAVL  145 (182)
T ss_pred             ceEEEEcCCCCEEEecCCCCCHHHHHHHH
Confidence            9999997 78999999998887 444433

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.81  E-value=2.6e-08  Score=74.74  Aligned_cols=43  Identities=12%  Similarity=0.011  Sum_probs=39.0

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA   59 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~   59 (213)
                      .+++++|.|||+||++|++..|.+.++.+++++.++.++.|++
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            5788999999999999999999999999999865799998885

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.81  E-value=1.3e-08  Score=76.24  Aligned_cols=43  Identities=12%  Similarity=0.015  Sum_probs=38.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .+++++|.|||+||+ |+...|.++++.+++++.++.++.|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            478999999999999 9999999999999998657888888753

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.79  E-value=6.6e-09  Score=67.04  Aligned_cols=48  Identities=48%  Similarity=0.902  Sum_probs=44.8

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQV  195 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~  195 (213)
                      ++|..+|+..+++.++.+++.++++++|++|++|+++||++++.+|++
T Consensus        25 i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~~   72 (72)
T cd02066          25 IEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALHE   72 (72)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhhC
Confidence            789999999998899999999999999999999999999999999863

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>KOG2501|consensus

Probab=98.77  E-value=1.3e-08  Score=75.38  Aligned_cols=71  Identities=24%  Similarity=0.451  Sum_probs=54.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC--cEEEEEEeCCC-------------------------chhHHHhC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS--QVVFARCIAED-------------------------LPKLSLNY   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~--~v~~~~vd~~~-------------------------~~~l~~~~   69 (213)
                      .++.+.++|.|.||++|+++-|.+.++.++....  .+-++-|+.|.                         ..+++++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            5699999999999999999999988887776641  24444454431                         24578899


Q ss_pred             CCccccEEEEEe-CCCCcc
Q psy15246         70 KVSAVPTFVILK-NLKPVD   87 (213)
Q Consensus        70 ~I~~~Pti~~~~-~g~~~~   87 (213)
                      +|.++|++++.+ +|..+.
T Consensus       112 ~v~~iP~l~i~~~dG~~v~  130 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGTVVT  130 (157)
T ss_pred             ccCcCceeEEecCCCCEeh
Confidence            999999999886 776554

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.75  E-value=3.3e-08  Score=72.61  Aligned_cols=83  Identities=19%  Similarity=0.236  Sum_probs=64.7

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCccc
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSAV   74 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~~   74 (213)
                      .+++++|.|| +.||+.|....+.+.++.+.+.+.++.++.|..+                     ....+++.|++...
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  101 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE  101 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            3789999999 5899999999999999998887546777777643                     33457888999988


Q ss_pred             ---------cEEEEEe-CCCCcccccCCCch-hHHH
Q psy15246         75 ---------PTFVILK-NLKPVDRVEGADPE-SLDK   99 (213)
Q Consensus        75 ---------Pti~~~~-~g~~~~~~~g~~~~-~l~~   99 (213)
                               |++++++ +|+....+.|.... ++.+
T Consensus       102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~  137 (140)
T cd03017         102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE  137 (140)
T ss_pred             cccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence                     8888886 68887777777655 3443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=98.74  E-value=2.1e-08  Score=65.41  Aligned_cols=46  Identities=28%  Similarity=0.493  Sum_probs=40.2

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQ  194 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~  194 (213)
                      ++|..+|++.+.+ ...++..++..++|+||++|+++||+|++.++.
T Consensus        26 i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029          26 ISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             CCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence            7899999998774 456777889999999999999999999999874

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.73  E-value=9.7e-08  Score=68.53  Aligned_cols=68  Identities=19%  Similarity=0.328  Sum_probs=57.4

Q ss_pred             CCCeEEEEEEcC-CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCc--
Q psy15246         17 KDKTAVVHFYAD-WSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVS--   72 (213)
Q Consensus        17 ~~~~~vV~F~a~-wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~--   72 (213)
                      .+++++|.||+. ||++|+...+.++++.++++..++.++.|..+                     .+.++++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            679999999999 99999999999999999988657899988865                     344578888888  


Q ss_pred             ----cccEEEEEeCCC
Q psy15246         73 ----AVPTFVILKNLK   84 (213)
Q Consensus        73 ----~~Pti~~~~~g~   84 (213)
                          .+|++.++..+.
T Consensus       104 ~~~~~~p~~~lid~~g  119 (124)
T PF00578_consen  104 KDTLALPAVFLIDPDG  119 (124)
T ss_dssp             TTSEESEEEEEEETTS
T ss_pred             cCCceEeEEEEECCCC
Confidence                889888887443

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=98.69  E-value=3.1e-08  Score=68.39  Aligned_cols=58  Identities=24%  Similarity=0.410  Sum_probs=45.8

Q ss_pred             CCceEEeccCCHHHHHHHHhhc---------CCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        148 VPYDTFDILQDQEVREGLKIYS---------NWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~---------~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      ++|..+|+..+++.++.+++..         +.|-.||||++++++|++|++.++.|+|.|.++|+-
T Consensus        32 I~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~f~ea~E~~~L~~fL~L   98 (99)
T PF04908_consen   32 IPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYEDFEEANENGELEEFLKL   98 (99)
T ss_dssp             --EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHHHHHHHCTT-HHHHHT-
T ss_pred             CCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHHHHHHHhhCHHHHHhCc
Confidence            7999999999999999888765         356668999999999999999999999999999863

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.67  E-value=3.4e-07  Score=82.35  Aligned_cols=159  Identities=13%  Similarity=0.215  Sum_probs=110.5

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe-CCCCc-ccccC-CC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK-NLKPV-DRVEG-AD   93 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~-~g~~~-~~~~g-~~   93 (213)
                      .+...++.|+.+.|..|..+...++++++.-+  ++.+...|..++.+++++|+|...|++.+++ +|+.. -++.| +.
T Consensus       365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~--~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~  442 (555)
T TIGR03143       365 ENPVTLLLFLDGSNEKSAELQSFLGEFASLSE--KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPS  442 (555)
T ss_pred             CCCEEEEEEECCCchhhHHHHHHHHHHHhcCC--cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCc
Confidence            34556778889999999999999999996555  8999889999999999999999999999996 55421 34455 55


Q ss_pred             chhHHHHHHHHhccCCCCCCcccccCCCcccccchhhhhhhhee-ccCC-CCCCCC-------------CCceEEeccCC
Q psy15246         94 PESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREGLKI-YSNW-PTYPQV-------------VPYDTFDILQD  158 (213)
Q Consensus        94 ~~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~-~apW-P~~~~~-------------v~~~~~d~~~~  158 (213)
                      ..++..||...++. .|.+   ..+.....+.+..-+.+.-|+. ++|| |.+|++             +....+|+...
T Consensus       443 G~Ef~s~i~~i~~~-~~~~---~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~  518 (555)
T TIGR03143       443 GHELNSFILALYNA-AGPG---QPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF  518 (555)
T ss_pred             cHhHHHHHHHHHHh-cCCC---CCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc
Confidence            56899999988752 2222   2234444443332222223444 5665 777776             55667777777


Q ss_pred             HHHHHHHHhhcCCCcccceEeCCe--Eee
Q psy15246        159 QEVREGLKIYSNWPTYPQVYVNTE--LIG  185 (213)
Q Consensus       159 ~~~~~~l~~~~~~pt~p~i~i~g~--~~g  185 (213)
                      ++..+..    ++-++|.++|||+  +.|
T Consensus       519 ~~~~~~~----~v~~vP~~~i~~~~~~~G  543 (555)
T TIGR03143       519 PDLKDEY----GIMSVPAIVVDDQQVYFG  543 (555)
T ss_pred             HHHHHhC----CceecCEEEECCEEEEee
Confidence            6665433    3457899999996  444

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.65  E-value=9.1e-08  Score=69.71  Aligned_cols=83  Identities=14%  Similarity=0.383  Sum_probs=52.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhC---CCccccEEEEEe-CCCCcccccCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNY---KVSAVPTFVILK-NLKPVDRVEGA   92 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~---~I~~~Pti~~~~-~g~~~~~~~g~   92 (213)
                      ..+..++.|..+|||.|.+..|.+.++++..+  ++.+--+.-+++.++.++|   |.+++|++++++ +|+.+.+. |.
T Consensus        40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-ge  116 (129)
T PF14595_consen   40 QKPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GE  116 (129)
T ss_dssp             -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ES
T ss_pred             CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cC
Confidence            45567888999999999999999999999987  6777777777777777665   788999999996 56776655 55


Q ss_pred             CchhHHHHHH
Q psy15246         93 DPESLDKKLQ  102 (213)
Q Consensus        93 ~~~~l~~~i~  102 (213)
                      ++..+.+++.
T Consensus       117 rP~~~~~~~~  126 (129)
T PF14595_consen  117 RPKEVQELVD  126 (129)
T ss_dssp             S-HHHH----
T ss_pred             CCHHHhhccc
Confidence            5555555543

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.60  E-value=3e-07  Score=72.84  Aligned_cols=83  Identities=12%  Similarity=0.217  Sum_probs=62.2

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------CchhHHHhCCCccccEEEEEeCCC-Cc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------DLPKLSLNYKVSAVPTFVILKNLK-PV   86 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------~~~~l~~~~~I~~~Pti~~~~~g~-~~   86 (213)
                      .++.-++.||.+.|+.|+.+.|+++.+++++.= .|..+.+|..         .+..++++++|..+|+++++..+. ..
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~-~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~  197 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGF-SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW  197 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC-EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence            477889999999999999999999999999973 4444444421         467899999999999999997443 22


Q ss_pred             -ccccCCCch-hHHHH
Q psy15246         87 -DRVEGADPE-SLDKK  100 (213)
Q Consensus        87 -~~~~g~~~~-~l~~~  100 (213)
                       .-..|..+. +|.+-
T Consensus       198 ~pv~~G~~s~~~L~~r  213 (215)
T PF13728_consen  198 YPVSQGFMSLDELEDR  213 (215)
T ss_pred             EEEeeecCCHHHHHHh
Confidence             223466655 56543

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=98.55  E-value=1.6e-07  Score=62.50  Aligned_cols=46  Identities=24%  Similarity=0.423  Sum_probs=39.4

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQ  194 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~  194 (213)
                      ++|..+|+..+.+. ..++..+++.++|++|++|+++||+|++.+..
T Consensus        33 i~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l   78 (79)
T TIGR02190        33 YDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAYL   78 (79)
T ss_pred             CCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence            89999999887554 45666789999999999999999999998753

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.55  E-value=4.6e-07  Score=70.06  Aligned_cols=44  Identities=23%  Similarity=0.046  Sum_probs=36.3

Q ss_pred             CCCeE-EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTA-VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~-vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .++++ ++.+||+||++|++..|.++++.+++++.++.++.|+++
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            46644 556699999999999999999999998656888888753

>KOG3414|consensus

Probab=98.53  E-value=7.5e-07  Score=63.11  Aligned_cols=71  Identities=20%  Similarity=0.413  Sum_probs=64.6

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD   87 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~   87 (213)
                      ...+.+++.|..+|-|.|.+|...+.++++...+ -..++-||.++.+++.+.|++...||+++|-+++.+.
T Consensus        21 t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmk   91 (142)
T KOG3414|consen   21 TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMK   91 (142)
T ss_pred             ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEE
Confidence            6788999999999999999999999999999995 5778889999999999999999999999998886544

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.53  E-value=5.2e-07  Score=66.99  Aligned_cols=78  Identities=10%  Similarity=0.072  Sum_probs=56.3

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------Cc--hhHHHhCCC
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DL--PKLSLNYKV   71 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~--~~l~~~~~I   71 (213)
                      ..+++++|.|| ++||+.|....|.++++.+++++.++.++.|..+                     ..  ..+++.|++
T Consensus        26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~  105 (149)
T cd03018          26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV  105 (149)
T ss_pred             cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence            33378888887 9999999999999999999987546777777643                     22  456777777


Q ss_pred             cc----cc--EEEEEe-CCCCcccccCCC
Q psy15246         72 SA----VP--TFVILK-NLKPVDRVEGAD   93 (213)
Q Consensus        72 ~~----~P--ti~~~~-~g~~~~~~~g~~   93 (213)
                      ..    .|  +++++. +|+......|..
T Consensus       106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~~  134 (149)
T cd03018         106 FDEDLGVAERAVFVIDRDGIIRYAWVSDD  134 (149)
T ss_pred             ccccCCCccceEEEECCCCEEEEEEecCC
Confidence            73    22  666664 677666666544

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.53  E-value=5.7e-07  Score=59.35  Aligned_cols=72  Identities=25%  Similarity=0.384  Sum_probs=52.4

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch--hHHHH
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE--SLDKK  100 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~--~l~~~  100 (213)
                      |.+++++|+.|..+...+++++..+.   +.+-.+|....+++ .+|||.++|++++  ||+..  +.|..+.  +|.++
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~   74 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG---IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKEL   74 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT---EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC---CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHH
Confidence            34478889999999999999998885   55556677666667 9999999999954  67633  5563333  68777


Q ss_pred             HH
Q psy15246        101 LQ  102 (213)
Q Consensus       101 i~  102 (213)
                      |+
T Consensus        75 l~   76 (76)
T PF13192_consen   75 LE   76 (76)
T ss_dssp             HH
T ss_pred             hC
Confidence            64

...

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.53  E-value=5.5e-07  Score=68.87  Aligned_cols=88  Identities=18%  Similarity=0.140  Sum_probs=62.9

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .++.++|.|| +.||++|....+.+.++.+++.+.++.++.|..+.                            ...+++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            4689999999 89999999999999999999875456666665432                            234667


Q ss_pred             hCCCc------cccEEEEEe-CCCCcccccCCC-----chhHHHHHHHH
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDRVEGAD-----PESLDKKLQNQ  104 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~~~g~~-----~~~l~~~i~~~  104 (213)
                      .|++.      ..|+.++++ +|+......+..     .+++.+.|+..
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            88886      567888886 776655553322     22466666554

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.53  E-value=5.8e-07  Score=66.36  Aligned_cols=74  Identities=14%  Similarity=0.145  Sum_probs=55.2

Q ss_pred             CCCeEEEEEEcCC-CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-----------------------hhHHHhCCCc
Q psy15246         17 KDKTAVVHFYADW-SDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-----------------------PKLSLNYKVS   72 (213)
Q Consensus        17 ~~~~~vV~F~a~w-C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~I~   72 (213)
                      .+++++|.||+.| |++|+...+.++++.++++  ++.++.|+.+..                       ..+++.|++.
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~  102 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVL  102 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCe
Confidence            5789999999999 6999999999999999986  677888876421                       3456677765


Q ss_pred             c------ccEEEEEe-CCCCcccccCC
Q psy15246         73 A------VPTFVILK-NLKPVDRVEGA   92 (213)
Q Consensus        73 ~------~Pti~~~~-~g~~~~~~~g~   92 (213)
                      .      .|+..++. +|+.+....|.
T Consensus       103 ~~~~~~~~~~~~iid~~G~I~~~~~~~  129 (143)
T cd03014         103 IKDLGLLARAVFVIDENGKVIYVELVP  129 (143)
T ss_pred             eccCCccceEEEEEcCCCeEEEEEECC
Confidence            3      56766665 67666555543

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.52  E-value=7.7e-07  Score=67.76  Aligned_cols=42  Identities=14%  Similarity=0.249  Sum_probs=36.7

Q ss_pred             CCCeEEEEEEcCC-CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADW-SDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~w-C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .+++++|.||+.| |++|.+..+.+.++.+++.  ++.++.|..+
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D   85 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD   85 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC
Confidence            5789999999999 9999999999999999985  6777777654

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.51  E-value=4.9e-07  Score=66.88  Aligned_cols=48  Identities=13%  Similarity=0.072  Sum_probs=37.4

Q ss_pred             CCCeE-EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh
Q psy15246         17 KDKTA-VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK   64 (213)
Q Consensus        17 ~~~~~-vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~   64 (213)
                      .++.+ ++.|++.||+.|+...+.+.++.+++...++.++.|..+....
T Consensus        22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~   70 (149)
T cd02970          22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK   70 (149)
T ss_pred             cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence            34444 5555699999999999999999999865478999998775443

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.51  E-value=6.1e-07  Score=67.16  Aligned_cols=79  Identities=11%  Similarity=0.132  Sum_probs=59.4

Q ss_pred             CCCeEEEEEEcC-CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCccc
Q psy15246         17 KDKTAVVHFYAD-WSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSAV   74 (213)
Q Consensus        17 ~~~~~vV~F~a~-wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~~   74 (213)
                      ++++++|.||+. ||+.|....+.+.++.+.+.+.++.++.|..+                     ....+++.|++...
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE  108 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence            578999999976 78889999999999988887546888888754                     23456778887654


Q ss_pred             ------------cEEEEEe-CCCCcccccCCCch
Q psy15246         75 ------------PTFVILK-NLKPVDRVEGADPE   95 (213)
Q Consensus        75 ------------Pti~~~~-~g~~~~~~~g~~~~   95 (213)
                                  |+.++++ +|+.+..+.|....
T Consensus       109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~  142 (154)
T PRK09437        109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS  142 (154)
T ss_pred             cccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence                        5556664 88877777776554

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.49  E-value=5.5e-07  Score=58.15  Aligned_cols=67  Identities=21%  Similarity=0.315  Sum_probs=48.1

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhC----CCccccEEEEEeCCCCcccccCCCchhH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNY----KVSAVPTFVILKNLKPVDRVEGADPESL   97 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~----~I~~~Pti~~~~~g~~~~~~~g~~~~~l   97 (213)
                      ++.|+++||++|+++...+++.       ++.+..+|.+.+.+..+++    ++.++|++.+  +|   ....|.+...|
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l   69 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER-------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKL   69 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC-------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHH
Confidence            5789999999999998888762       4566677777665544443    7899999965  44   34567776666


Q ss_pred             HHH
Q psy15246         98 DKK  100 (213)
Q Consensus        98 ~~~  100 (213)
                      .++
T Consensus        70 ~~~   72 (73)
T cd02976          70 RAL   72 (73)
T ss_pred             Hhh
Confidence            654

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR03137 AhpC peroxiredoxin

Probab=98.48  E-value=6.9e-07  Score=69.28  Aligned_cols=73  Identities=19%  Similarity=0.115  Sum_probs=55.6

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------------------chhHHHhCC
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------------------LPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~   70 (213)
                      .+++++|.|| +.||+.|....+.+.++.+++.+.++.++.|..+.                         ..++++.|+
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            5789999999 99999999999999999888864456666665432                         335778899


Q ss_pred             Cc------cccEEEEEe-CCCCcccc
Q psy15246         71 VS------AVPTFVILK-NLKPVDRV   89 (213)
Q Consensus        71 I~------~~Pti~~~~-~g~~~~~~   89 (213)
                      +.      ..|+.+++. +|+.....
T Consensus       110 v~~~~~g~~~p~tfiID~~G~I~~~~  135 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGVIQAVE  135 (187)
T ss_pred             CcccCCCceeeEEEEECCCCEEEEEE
Confidence            86      468888775 78655443

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.48  E-value=3.8e-07  Score=68.56  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=51.6

Q ss_pred             hhhhhcCCCeEEEEEEcCCCHHHHhHHH-HH--HHHHHHcCCCcEEEEEEeCCCchhHHHhC--------CCccccEEEE
Q psy15246         11 DVEKYGKDKTAVVHFYADWSDECKHMNT-LF--DEMSKQSKYSQVVFARCIAEDLPKLSLNY--------KVSAVPTFVI   79 (213)
Q Consensus        11 ~~~~~~~~~~~vV~F~a~wC~~C~~~~~-~~--~~l~~~~~~~~v~~~~vd~~~~~~l~~~~--------~I~~~Pti~~   79 (213)
                      ....-+.+|+++|.++++||+.|+.|.. .|  .++++.+.. ++.-++||.++.+++...|        +..|+|+.++
T Consensus        30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vf  108 (163)
T PF03190_consen   30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVF  108 (163)
T ss_dssp             HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEE
T ss_pred             HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEE
Confidence            3344578999999999999999999986 44  345666654 6788899999999999888        8899999998


Q ss_pred             Ee-CCCCcc
Q psy15246         80 LK-NLKPVD   87 (213)
Q Consensus        80 ~~-~g~~~~   87 (213)
                      +. +|+++.
T Consensus       109 ltPdg~p~~  117 (163)
T PF03190_consen  109 LTPDGKPFF  117 (163)
T ss_dssp             E-TTS-EEE
T ss_pred             ECCCCCeee
Confidence            86 777654

; PDB: 3IRA_A.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.47  E-value=1.4e-07  Score=67.18  Aligned_cols=66  Identities=14%  Similarity=0.201  Sum_probs=48.4

Q ss_pred             ccccCCCcccccchhhhhhhheeccCCCC------CCCC----------CCceEEec-----cCCHHHHHHHHhhc--CC
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNWPT------YPQV----------VPYDTFDI-----LQDQEVREGLKIYS--NW  171 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apWP~------~~~~----------v~~~~~d~-----~~~~~~~~~l~~~~--~~  171 (213)
                      +..++.++|+.........+|+||||||-      |.++          +.++.|||     +++.++++..+ ++  +|
T Consensus         3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~-I~~~gy   81 (116)
T cd03007           3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYK-LDKESY   81 (116)
T ss_pred             eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhC-CCcCCC
Confidence            35678899985555555589999995543      3333          56899999     55677887777 67  89


Q ss_pred             CcccceEeCCe
Q psy15246        172 PTYPQVYVNTE  182 (213)
Q Consensus       172 pt~p~i~i~g~  182 (213)
                      ||+ .+|.+|+
T Consensus        82 PTl-~lF~~g~   91 (116)
T cd03007          82 PVI-YLFHGGD   91 (116)
T ss_pred             CEE-EEEeCCC
Confidence            999 7899884

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.46  E-value=8.2e-07  Score=63.49  Aligned_cols=67  Identities=15%  Similarity=0.326  Sum_probs=48.2

Q ss_pred             cCCCeEEEEEEc-------CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-------hHHH--hCCCccccEEEE
Q psy15246         16 GKDKTAVVHFYA-------DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-------KLSL--NYKVSAVPTFVI   79 (213)
Q Consensus        16 ~~~~~~vV~F~a-------~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-------~l~~--~~~I~~~Pti~~   79 (213)
                      .++++++|.|++       +|||.|.+..|.+++.....+. +..++.|.+...+       ....  +++++++||++-
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~   95 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR   95 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence            567899999996       6999999999999998887765 7888888774322       3344  699999999999


Q ss_pred             EeCC
Q psy15246         80 LKNL   83 (213)
Q Consensus        80 ~~~g   83 (213)
                      +..+
T Consensus        96 ~~~~   99 (119)
T PF06110_consen   96 WETG   99 (119)
T ss_dssp             CTSS
T ss_pred             ECCC
Confidence            8766

; PDB: 1V9W_A 1WOU_A.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.38  E-value=1.6e-06  Score=63.55  Aligned_cols=77  Identities=16%  Similarity=0.142  Sum_probs=54.4

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------chhHHHhCCCcc
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------LPKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~I~~   73 (213)
                      .+++++|.|| +.||+.|....+.+.++.++++..++.++.|..+.                      ...+++.|++..
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~  100 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI  100 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence            6889999999 78999999999999999998854367777776542                      234556666665


Q ss_pred             cc---------EEEEEe-CCCCcccccCCC
Q psy15246         74 VP---------TFVILK-NLKPVDRVEGAD   93 (213)
Q Consensus        74 ~P---------ti~~~~-~g~~~~~~~g~~   93 (213)
                      .|         ++++++ +|+.+....|..
T Consensus       101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~  130 (140)
T cd02971         101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL  130 (140)
T ss_pred             ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence            54         455554 466555555544

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=3.5e-07  Score=62.22  Aligned_cols=73  Identities=33%  Similarity=0.578  Sum_probs=51.5

Q ss_pred             CccccEEEEEeCCCCcccccCCCchhHHHHHHHHhccCCCCCCcccc-cCCCcccccchhhhhhhheeccCCCCCCCC--
Q psy15246         71 VSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITH-VPYDTFDILQDQEVREGLKIYSNWPTYPQV--  147 (213)
Q Consensus        71 I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~kg~p~~~~~-~~~~~f~~l~~~~~~~~v~~~apWP~~~~~--  147 (213)
                      |..-|.+ +|-+|.+..-.+|++... .+.+..            ++ ..+..+++|.|+++|+.|+.|++|||+||+  
T Consensus        12 i~~n~Vv-LFMKGtp~~P~CGFS~~~-vqiL~~------------~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi   77 (105)
T COG0278          12 IKENPVV-LFMKGTPEFPQCGFSAQA-VQILSA------------CGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV   77 (105)
T ss_pred             hhcCceE-EEecCCCCCCCCCccHHH-HHHHHH------------cCCcceeEEeeccCHHHHhccHhhcCCCCCceeeE
Confidence            4445544 555677666788988652 222222            22 578999999999999999999999999999  


Q ss_pred             -CCc-eEEeccC
Q psy15246        148 -VPY-DTFDILQ  157 (213)
Q Consensus       148 -v~~-~~~d~~~  157 (213)
                       ..| +-.|+..
T Consensus        78 ~GEfvGG~DIv~   89 (105)
T COG0278          78 NGEFVGGCDIVR   89 (105)
T ss_pred             CCEEeccHHHHH
Confidence             333 5566643

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.37  E-value=3.2e-06  Score=68.33  Aligned_cols=89  Identities=12%  Similarity=0.160  Sum_probs=66.1

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------CchhHHHhCCCccccEEEEEeCC-CCc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------DLPKLSLNYKVSAVPTFVILKNL-KPV   86 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------~~~~l~~~~~I~~~Pti~~~~~g-~~~   86 (213)
                      .++.-++.||.+.|++|+++.|.++.+++.+.= .+..+.+|..         .+...+++++|..+|+++++..+ +..
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi-~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~  227 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI-SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM  227 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHhCC-eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence            355889999999999999999999999999983 3444444433         23568999999999999998744 322


Q ss_pred             -ccccCCCch-hHHHHHHHHhc
Q psy15246         87 -DRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        87 -~~~~g~~~~-~l~~~i~~~~~  106 (213)
                       .--.|..+. +|.+.|...+.
T Consensus       228 ~pv~~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       228 SPLAYGFISQDELKERILNVLT  249 (256)
T ss_pred             EEEeeccCCHHHHHHHHHHHHh
Confidence             223476666 68887777653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.37  E-value=2e-06  Score=66.39  Aligned_cols=43  Identities=7%  Similarity=-0.035  Sum_probs=37.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .+++++|.|||+||+.|++ .+.++++.++|++.++.++.+.|+
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            4799999999999999975 779999999998657999998874

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.35  E-value=2.6e-06  Score=70.51  Aligned_cols=106  Identities=12%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhH-----HHHHHHH-HHHcCCCcEEEEEEeCCCchhHHHhCCCcccc
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHM-----NTLFDEM-SKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP   75 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~-----~~~~~~l-~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~P   75 (213)
                      .|++|+..++..++++.+..+|+|+.|--..-...     ...+-+| |+-+...++.|+.||..++..+++++|+...+
T Consensus        35 RVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~  114 (383)
T PF01216_consen   35 RVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEG  114 (383)
T ss_dssp             -CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STT
T ss_pred             ceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccC
Confidence            37899998899999999999999999874332221     1212233 44444457999999999999999999999999


Q ss_pred             EEEEEeCCCCcccccCCCchhHHHHHHHHhcc
Q psy15246         76 TFVILKNLKPVDRVEGADPESLDKKLQNQAST  107 (213)
Q Consensus        76 ti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~  107 (213)
                      ++.+|++|+.+.+.+-+++.-|..||...+..
T Consensus       115 SiyVfkd~~~IEydG~~saDtLVeFl~dl~ed  146 (383)
T PF01216_consen  115 SIYVFKDGEVIEYDGERSADTLVEFLLDLLED  146 (383)
T ss_dssp             EEEEEETTEEEEE-S--SHHHHHHHHHHHHSS
T ss_pred             cEEEEECCcEEEecCccCHHHHHHHHHHhccc
Confidence            99999999999876334444799999998754

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=98.34  E-value=6.8e-07  Score=77.43  Aligned_cols=58  Identities=22%  Similarity=0.425  Sum_probs=47.8

Q ss_pred             CCceEEeccCCHHHHH---HHH-----hhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCC
Q psy15246        148 VPYDTFDILQDQEVRE---GLK-----IYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPP  207 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~---~l~-----~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~  207 (213)
                      ++|..+|++.++...+   .++     +.+|..|+|||||+|++|||+|++++  ..|+|.++|++-+
T Consensus        27 i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~--~~g~l~~~~~~~~   92 (410)
T PRK12759         27 IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA--RAGEVIARVKGSS   92 (410)
T ss_pred             CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--HhCCHHHHhcCCc
Confidence            8999999998764333   322     23688999999999999999999988  9999999998743

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.32  E-value=4e-06  Score=64.97  Aligned_cols=88  Identities=15%  Similarity=0.141  Sum_probs=63.4

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-------------------------CchhHHHhCC
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-------------------------DLPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~~~   70 (213)
                      .++.+++.|| +.||+.|....+.+.++.+++...++.++.|..+                         .+.+++++||
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            4678999999 9999999999999999999986545666666644                         2346789999


Q ss_pred             Cc----cc--cEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246         71 VS----AV--PTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ  104 (213)
Q Consensus        71 I~----~~--Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~  104 (213)
                      +.    ++  |+..++. +|+.....     .|++.+++.+.|+.+
T Consensus       110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            83    56  8888886 77644332     233444666666544

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.31  E-value=1e-05  Score=61.91  Aligned_cols=100  Identities=20%  Similarity=0.309  Sum_probs=79.1

Q ss_pred             eEEeCCchhhhhhcCCCe-EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc--cccEEEE
Q psy15246          3 VVQISEELDVEKYGKDKT-AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS--AVPTFVI   79 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~-~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~--~~Pti~~   79 (213)
                      +.++|.+........+.+ +++.|..........+...++.+++.+++ ++.|+.+|++..+++++.+++.  .+|++++
T Consensus        79 v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi  157 (184)
T PF13848_consen   79 VPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDFPRLLKYFGIDEDDLPALVI  157 (184)
T ss_dssp             CEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTTHHHHHHTTTTTSSSSEEEE
T ss_pred             ccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHhHHHHHHcCCCCccCCEEEE
Confidence            567888777777777765 78888878888999999999999999997 8999999999999999999999  9999999


Q ss_pred             EeC-CCCccc-ccCCCc-hhHHHHHHH
Q psy15246         80 LKN-LKPVDR-VEGADP-ESLDKKLQN  103 (213)
Q Consensus        80 ~~~-g~~~~~-~~g~~~-~~l~~~i~~  103 (213)
                      +.. +....+ ..+... ..|.+|+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  158 FDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             EETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             EECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            983 322211 234333 368888763

...

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.29  E-value=6.2e-06  Score=66.37  Aligned_cols=88  Identities=10%  Similarity=0.123  Sum_probs=66.2

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------CchhHHHhCCCccccEEEEEeCC--CCc
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------DLPKLSLNYKVSAVPTFVILKNL--KPV   86 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------~~~~l~~~~~I~~~Pti~~~~~g--~~~   86 (213)
                      ++.-++.||.+.|++|+++.|+++.+++.+.- .|..+.+|..         .+...+++++|..+|+++++..+  +..
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~-~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~  221 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL-SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR  221 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhCC-eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence            55889999999999999999999999999984 4555555542         23446789999999999999743  333


Q ss_pred             ccccCCCch-hHHHHHHHHhc
Q psy15246         87 DRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        87 ~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      .-..|..+. +|.+.|...+.
T Consensus       222 pv~~G~iS~deL~~Ri~~v~t  242 (248)
T PRK13703        222 PLSYGFITQDDLAKRFLNVST  242 (248)
T ss_pred             EEeeccCCHHHHHHHHHHHHh
Confidence            334476666 78888777653

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.28  E-value=4.5e-06  Score=65.56  Aligned_cols=89  Identities=16%  Similarity=0.131  Sum_probs=61.9

Q ss_pred             CCCeEEE-EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------------CchhHHHh
Q psy15246         17 KDKTAVV-HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------------DLPKLSLN   68 (213)
Q Consensus        17 ~~~~~vV-~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~   68 (213)
                      .++.++| .|+++||+.|....+.+.++.++++..++.++.|.++                           .+.++++.
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~  105 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE  105 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence            4565554 6899999999999999999988887445666666543                           23457788


Q ss_pred             CCCc------cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHHh
Q psy15246         69 YKVS------AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQA  105 (213)
Q Consensus        69 ~~I~------~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~~  105 (213)
                      ||+.      .+|+++++. +|+.....     .|++.+++.+.|+.+.
T Consensus       106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            8984      589998886 66543322     2455557777776653

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.27  E-value=2.9e-06  Score=62.37  Aligned_cols=44  Identities=18%  Similarity=0.136  Sum_probs=37.9

Q ss_pred             CCCeEEEEEEcCCCHH-HHhHHHHHHHHHHHcCCC---cEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSDE-CKHMNTLFDEMSKQSKYS---QVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~-C~~~~~~~~~l~~~~~~~---~v~~~~vd~~   60 (213)
                      .+++++|.||++||++ |.+..+.+.++.+++...   ++.++.|..+
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            6789999999999998 999999999999988752   3888888764

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK15000 peroxidase; Provisional

Probab=98.25  E-value=5.9e-06  Score=64.78  Aligned_cols=88  Identities=15%  Similarity=0.202  Sum_probs=63.3

Q ss_pred             CCCeEEEEEEc-CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFYA-DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~a-~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .++.++|.||+ .||+.|....+.+.++.++++..++.++.|.++.                            ..++++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            57899999999 5999999999999999999875467777776552                            224677


Q ss_pred             hCCCc------cccEEEEEe-CCCCcccccC-----CCchhHHHHHHHH
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDRVEG-----ADPESLDKKLQNQ  104 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~~~g-----~~~~~l~~~i~~~  104 (213)
                      .|++.      ++|+.+++. +|+......+     ++.+++.+.++.+
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            78887      688888887 6765443333     3334566655543

>KOG3425|consensus

Probab=98.24  E-value=6.3e-06  Score=58.02  Aligned_cols=67  Identities=22%  Similarity=0.387  Sum_probs=55.0

Q ss_pred             hcCCCeEEEEEEc--------CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------chhHHHhCCC-ccccEEE
Q psy15246         15 YGKDKTAVVHFYA--------DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------LPKLSLNYKV-SAVPTFV   78 (213)
Q Consensus        15 ~~~~~~~vV~F~a--------~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------~~~l~~~~~I-~~~Pti~   78 (213)
                      +.+++.++|.|++        +|||.|.+..|.+.+.-+..+. ++.|+.|++.+       +-.+....++ .++||++
T Consensus        22 ~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLl  100 (128)
T KOG3425|consen   22 VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLL  100 (128)
T ss_pred             HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccccCCCceeecceee
Confidence            3577779999996        7999999999999998887765 89999999764       3345666677 8999998


Q ss_pred             EEeC
Q psy15246         79 ILKN   82 (213)
Q Consensus        79 ~~~~   82 (213)
                      =+++
T Consensus       101 rw~~  104 (128)
T KOG3425|consen  101 RWKR  104 (128)
T ss_pred             EEcC
Confidence            8874

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.23  E-value=4.2e-06  Score=52.43  Aligned_cols=54  Identities=20%  Similarity=0.249  Sum_probs=41.8

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLK   84 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~   84 (213)
                      ++.|+.+||++|++.+..|++.       ++.+-.+|.+.+++.    .+..+..++|++.+  +|+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~-------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~   58 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK-------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK   58 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc-------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence            5789999999999999988653       577888888876543    33449999999875  554

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.19  E-value=8.3e-06  Score=58.30  Aligned_cols=88  Identities=16%  Similarity=0.184  Sum_probs=66.0

Q ss_pred             cCCCeEEEEEEcC----CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCccccEEEEEe--CC--CC
Q psy15246         16 GKDKTAVVHFYAD----WSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--LPKLSLNYKVSAVPTFVILK--NL--KP   85 (213)
Q Consensus        16 ~~~~~~vV~F~a~----wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~~~~--~g--~~   85 (213)
                      .+.|.++|+++++    ||..|+.... =+++.+-+.. ++.+...|++.  ..+++..++++++|++.++.  ++  +.
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~-~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~v   92 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT-RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTI   92 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc-CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence            6789999999999    8888866431 1334444444 68888888874  45799999999999999883  33  35


Q ss_pred             cccccCCCch-hHHHHHHHHh
Q psy15246         86 VDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        86 ~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      +.+..|..+. +|...++...
T Consensus        93 v~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          93 VGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH
Confidence            7788897776 7888887764

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=98.19  E-value=9.6e-06  Score=65.02  Aligned_cols=81  Identities=16%  Similarity=0.228  Sum_probs=59.0

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE--------------------------------------
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC--------------------------------------   57 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v--------------------------------------   57 (213)
                      .+++..++.|.-+.||+|+++.+.+.++.+.    ++.+..+                                      
T Consensus       105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~  180 (232)
T PRK10877        105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS  180 (232)
T ss_pred             CCCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence            3567889999999999999999988876431    2222211                                      


Q ss_pred             ------eCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHH
Q psy15246         58 ------IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        58 ------d~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                            +++++.++++++||+++||++ +.+|+.+   .|..+. +|.++|++.
T Consensus       181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence                  112456689999999999998 7788754   577654 788888764

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=98.18  E-value=7.6e-06  Score=53.27  Aligned_cols=66  Identities=17%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhC---CCccccEEEEEeCCCCcccccCCCchhHHH
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNY---KVSAVPTFVILKNLKPVDRVEGADPESLDK   99 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~---~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~   99 (213)
                      ..|..++|++|++.+..|++.       ++.+-.+|++++++..+++   |..++|++++  +|.  ....|+++..|.+
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~   70 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH-------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKA   70 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHh
Confidence            468899999999999988762       5778888888877665554   8889999744  453  2467888876654

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG0911|consensus

Probab=98.17  E-value=1.9e-06  Score=67.20  Aligned_cols=74  Identities=38%  Similarity=0.688  Sum_probs=54.6

Q ss_pred             CCccccEEEEEeCCCCcccccCCCchhHHHHHHHHhccCCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCC--
Q psy15246         70 KVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQV--  147 (213)
Q Consensus        70 ~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~--  147 (213)
                      -++.-|.. +|.+|.+..-.+|++.. +...|+.+            .+++..||++.|+++|+.++.|++||||||+  
T Consensus       135 lv~a~~v~-lFmKG~p~~P~CGFS~~-~v~iL~~~------------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI  200 (227)
T KOG0911|consen  135 LVKAKPVM-LFMKGTPEEPKCGFSRQ-LVGILQSH------------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYV  200 (227)
T ss_pred             hcccCeEE-EEecCCCCcccccccHH-HHHHHHHc------------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeE
Confidence            45566654 56677776667788754 33444443            4569999999999999999999999999999  


Q ss_pred             -CCc-eEEeccC
Q psy15246        148 -VPY-DTFDILQ  157 (213)
Q Consensus       148 -v~~-~~~d~~~  157 (213)
                       ..| +-.|+..
T Consensus       201 ~GEFiGGlDIl~  212 (227)
T KOG0911|consen  201 KGEFIGGLDILK  212 (227)
T ss_pred             CCEeccCcHHHH
Confidence             555 5577754

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.15  E-value=8.3e-05  Score=54.24  Aligned_cols=104  Identities=12%  Similarity=0.217  Sum_probs=75.1

Q ss_pred             ceEEeCCchhhh-hhcCCCeEEEEEEcC--CC-HHH-HhHHHHHHHHHHHcCCCc-EEEEEEeCCCchhHHHhCCCc--c
Q psy15246          2 SVVQISEELDVE-KYGKDKTAVVHFYAD--WS-DEC-KHMNTLFDEMSKQSKYSQ-VVFARCIAEDLPKLSLNYKVS--A   73 (213)
Q Consensus         2 ~v~~l~~~~~~~-~~~~~~~~vV~F~a~--wC-~~C-~~~~~~~~~l~~~~~~~~-v~~~~vd~~~~~~l~~~~~I~--~   73 (213)
                      .+++|+++...+ .-.+++..+|-|.-.  .| +.+ ..+...+.++|+.+++ + +.|+.+|.+....+.+.||+.  +
T Consensus         3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg-k~i~Fv~vd~~~~~~~~~~fgl~~~~   81 (130)
T cd02983           3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK-KPWGWLWTEAGAQLDLEEALNIGGFG   81 (130)
T ss_pred             ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC-CcEEEEEEeCcccHHHHHHcCCCccC
Confidence            378888854433 334456667766432  12 223 4678899999999998 6 999999999999999999996  4


Q ss_pred             ccEEEEEeCCC-CcccccC-CCchhHHHHHHHHhc
Q psy15246         74 VPTFVILKNLK-PVDRVEG-ADPESLDKKLQNQAS  106 (213)
Q Consensus        74 ~Pti~~~~~g~-~~~~~~g-~~~~~l~~~i~~~~~  106 (213)
                      +|+++++...+ ....+.| .+.++|.+|+++.+.
T Consensus        82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~  116 (130)
T cd02983          82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY  116 (130)
T ss_pred             CCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence            99999997543 2221334 444589999999975

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.13  E-value=5.6e-07  Score=64.05  Aligned_cols=67  Identities=15%  Similarity=0.253  Sum_probs=49.5

Q ss_pred             ccccCCCccccc---chhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccc
Q psy15246        115 ITHVPYDTFDIL---QDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQ  176 (213)
Q Consensus       115 ~~~~~~~~f~~l---~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~  176 (213)
                      +..++.++|+.+   .+.+..++|.|||||        |.++++       +.|+.+||+.+.+++..-.++.++||+ .
T Consensus        11 v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl-~   89 (113)
T cd03006          11 VLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI-H   89 (113)
T ss_pred             eEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE-E
Confidence            456777888743   344555899999999        656555       678999999988887432236788999 7


Q ss_pred             eEeCCe
Q psy15246        177 VYVNTE  182 (213)
Q Consensus       177 i~i~g~  182 (213)
                      +|.+|+
T Consensus        90 lf~~g~   95 (113)
T cd03006          90 LYYRSR   95 (113)
T ss_pred             EEECCc
Confidence            888876

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=98.13  E-value=2.5e-05  Score=52.19  Aligned_cols=72  Identities=8%  Similarity=0.180  Sum_probs=55.0

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH---HhCCCccccEEEEEeCCCCcccccCCCchhHH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS---LNYKVSAVPTFVILKNLKPVDRVEGADPESLD   98 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~---~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~   98 (213)
                      +..|..+||++|++.+..|++     .  ++.|-.+|++++++..   +..+...+|++++  ++   ....|++.++|.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-----~--gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~~~l~   70 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-----R--GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRPDMIN   70 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-----C--CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCHHHHH
Confidence            567889999999999988866     2  5788888998877643   3457789999864  44   235699999888


Q ss_pred             HHHHHHh
Q psy15246         99 KKLQNQA  105 (213)
Q Consensus        99 ~~i~~~~  105 (213)
                      +.+....
T Consensus        71 ~~~~~~~   77 (81)
T PRK10329         71 RLHPAPH   77 (81)
T ss_pred             HHHHhhh
Confidence            8877653

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.08  E-value=9.8e-06  Score=53.79  Aligned_cols=58  Identities=19%  Similarity=0.197  Sum_probs=43.1

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-----hHHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-----KLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-----~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|+++|||+|+.+.+.++++...     +.+..++.+.+.     .+.+..++.++|++  |.+|+.+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i   64 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK-----PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI   64 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC-----cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence            5779999999999999999997653     446667766542     35566788999996  5566543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.07  E-value=5.6e-06  Score=51.82  Aligned_cols=37  Identities=41%  Similarity=0.716  Sum_probs=35.2

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ++|..+|++.+++.++.+++.++..|+|++|++|++|
T Consensus        24 i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I   60 (60)
T PF00462_consen   24 IPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI   60 (60)
T ss_dssp             BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred             CeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence            7899999999999999999999999999999999987

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.07  E-value=1.9e-05  Score=70.62  Aligned_cols=81  Identities=12%  Similarity=0.094  Sum_probs=66.1

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-h
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-S   96 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~   96 (213)
                      ...-+-.|+++.||+|......+++++...+  +|.+-.+|..+.++++++|+|.++|++++  +|+.+  +.|..+. +
T Consensus       116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~  189 (517)
T PRK15317        116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEE  189 (517)
T ss_pred             CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHH
Confidence            3455889999999999999999999999877  79999999999999999999999999965  56533  3455554 6


Q ss_pred             HHHHHHHH
Q psy15246         97 LDKKLQNQ  104 (213)
Q Consensus        97 l~~~i~~~  104 (213)
                      +.+.+.+.
T Consensus       190 ~~~~~~~~  197 (517)
T PRK15317        190 ILAKLDTG  197 (517)
T ss_pred             HHHHHhcc
Confidence            66666643

>KOG3171|consensus

Probab=98.06  E-value=2.6e-05  Score=60.44  Aligned_cols=85  Identities=20%  Similarity=0.336  Sum_probs=70.8

Q ss_pred             eEEeCC-chhhhhhc---CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          3 VVQISE-ELDVEKYG---KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         3 v~~l~~-~~~~~~~~---~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      |+++++ ..+.+.+.   +.-+++|+.|-+.-+-|..+...+.-||++++  .+.|+++-.+. ....++|..+++||++
T Consensus       140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP--~vKFckikss~-~gas~~F~~n~lP~Ll  216 (273)
T KOG3171|consen  140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP--IVKFCKIKSSN-TGASDRFSLNVLPTLL  216 (273)
T ss_pred             EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC--ceeEEEeeecc-ccchhhhcccCCceEE
Confidence            678877 44555553   34578899999999999999999999999999  89999987654 4678899999999999


Q ss_pred             EEeCCCCccccc
Q psy15246         79 ILKNLKPVDRVE   90 (213)
Q Consensus        79 ~~~~g~~~~~~~   90 (213)
                      +|++|..+..+.
T Consensus       217 iYkgGeLIgNFv  228 (273)
T KOG3171|consen  217 IYKGGELIGNFV  228 (273)
T ss_pred             EeeCCchhHHHH
Confidence            999998876544

>PRK13189 peroxiredoxin; Provisional

Probab=98.04  E-value=2.3e-05  Score=62.40  Aligned_cols=88  Identities=10%  Similarity=0.097  Sum_probs=60.1

Q ss_pred             CCC-eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------------------------chhHHHh
Q psy15246         17 KDK-TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------------------------LPKLSLN   68 (213)
Q Consensus        17 ~~~-~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~   68 (213)
                      .++ .+++.|+++||+.|....+.+.++.++++..++.++.|.++.                           ..++++.
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~  113 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK  113 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence            456 445678899999999999999999998875456666665442                           2356788


Q ss_pred             CCCc-------cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246         69 YKVS-------AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ  104 (213)
Q Consensus        69 ~~I~-------~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~  104 (213)
                      ||+.       .+|+.+++. +|+.....     .|++.+++.+.|+.+
T Consensus       114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8875       468788886 66543322     244444666666554

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.03  E-value=3.1e-05  Score=62.95  Aligned_cols=88  Identities=15%  Similarity=0.123  Sum_probs=61.9

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .++.+++.|| +.||+.|....+.+.++.+++...++.++.|.++.                            +.++++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak  176 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK  176 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence            5677888888 89999999999999999988875356666665442                            245788


Q ss_pred             hCCCc-----cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246         68 NYKVS-----AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ  104 (213)
Q Consensus        68 ~~~I~-----~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~  104 (213)
                      .||+.     ..|+.++++ +|+.....     .|.+.+++.+.|+.+
T Consensus       177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            99985     589988887 77654432     234444566655544

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.03  E-value=2.3e-05  Score=70.63  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=63.0

Q ss_pred             CCeE-EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-
Q psy15246         18 DKTA-VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-   95 (213)
Q Consensus        18 ~~~~-vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-   95 (213)
                      ++++ +-.|.+++|++|.+....+++++.+.+  +|..-.+|.+..++++++|+|.++|++++  ||+.+  +.|..+. 
T Consensus       475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~  548 (555)
T TIGR03143       475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIE  548 (555)
T ss_pred             CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHH
Confidence            4555 445689999999999999999999988  79999999999999999999999999876  56533  3464444 


Q ss_pred             hHHHHH
Q psy15246         96 SLDKKL  101 (213)
Q Consensus        96 ~l~~~i  101 (213)
                      ++.++|
T Consensus       549 ~~~~~~  554 (555)
T TIGR03143       549 EMLELI  554 (555)
T ss_pred             HHHHhh
Confidence            566654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.02  E-value=0.00011  Score=52.10  Aligned_cols=101  Identities=16%  Similarity=0.136  Sum_probs=76.1

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHH---cCCCcEEEEEEeCCCchhHHHhCCCcc--ccEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQ---SKYSQVVFARCIAEDLPKLSLNYKVSA--VPTF   77 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~---~~~~~v~~~~vd~~~~~~l~~~~~I~~--~Pti   77 (213)
                      |-++|.+.......++.+..+.|+  .-..-..+.+.+.++|++   +++ ++.|+.+|.+......+.+|+..  +|.+
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~~~~~~~fgl~~~~~P~i   77 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKG-AINFLTADGDKFRHPLLHLGKTPADLPVI   77 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence            346677767777777777777777  223347788999999999   998 89999999999888999999997  9999


Q ss_pred             EEEeCCC--CcccccC-CCchhHHHHHHHHhc
Q psy15246         78 VILKNLK--PVDRVEG-ADPESLDKKLQNQAS  106 (213)
Q Consensus        78 ~~~~~g~--~~~~~~g-~~~~~l~~~i~~~~~  106 (213)
                      .+.....  ......+ .+.+.|.+|+++.+.
T Consensus        78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            9987432  2221333 444589999998863

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.01  E-value=3e-05  Score=61.49  Aligned_cols=88  Identities=15%  Similarity=0.115  Sum_probs=61.1

Q ss_pred             CCCe-EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------------------------chhHHHh
Q psy15246         17 KDKT-AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------------------------LPKLSLN   68 (213)
Q Consensus        17 ~~~~-~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~   68 (213)
                      .++. +++.|+++||+.|....+.+.++.+++...++.++.|.++.                           +.++++.
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            3555 56799999999999999999999999865467777776553                           2356788


Q ss_pred             CCCc-------cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246         69 YKVS-------AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ  104 (213)
Q Consensus        69 ~~I~-------~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~  104 (213)
                      ||+.       .+|++.++. +|+.....     .|.+.+++.+.|+.+
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8873       679888886 66543322     233334566666543

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.00  E-value=5.6e-05  Score=54.36  Aligned_cols=69  Identities=20%  Similarity=0.426  Sum_probs=58.4

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcccc-EEEEEeCCCCc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP-TFVILKNLKPV   86 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~P-ti~~~~~g~~~   86 (213)
                      ..++.+++.|..+|-+.|.++...+.+++...++ -..++.||.++-+++.+.|.+. -| |++||-+++.+
T Consensus        18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm   87 (133)
T PF02966_consen   18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHM   87 (133)
T ss_dssp             -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEE
T ss_pred             cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEE
Confidence            6789999999999999999999999999999996 6888999999999999999999 67 56677566543

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.00  E-value=0.00011  Score=50.40  Aligned_cols=92  Identities=18%  Similarity=0.278  Sum_probs=67.0

Q ss_pred             EEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          4 VQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         4 ~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      .++++....+ .+..+..++|-|+.++|+   .....|.++|+.+++ .+.|+.+.   +.++++++++.. |++++|+.
T Consensus         2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~   73 (97)
T cd02981           2 KELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---DKEVAKKLKVKP-GSVVLFKP   73 (97)
T ss_pred             eecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---hHHHHHHcCCCC-CceEEeCC
Confidence            4566643333 578899999999999987   466789999999986 68888766   567888887754 89999976


Q ss_pred             C-CCcccccC-CCchhHHHHHHH
Q psy15246         83 L-KPVDRVEG-ADPESLDKKLQN  103 (213)
Q Consensus        83 g-~~~~~~~g-~~~~~l~~~i~~  103 (213)
                      . .....+.| ....+|.+||..
T Consensus        74 ~~~~~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          74 FEEEPVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             cccCCccCCCCCCHHHHHHHHHh
Confidence            4 33333455 444589999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.97  E-value=3.6e-05  Score=60.10  Aligned_cols=75  Identities=21%  Similarity=0.220  Sum_probs=51.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE---------------------------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC---------------------------------------   57 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v---------------------------------------   57 (213)
                      +.+..++.|+.+.|++|+++.+.+.+.    .+ ++.+..+                                       
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~  150 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKPN----AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP  150 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhc----cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence            467899999999999999999888751    11 2222221                                       


Q ss_pred             ------eCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHH
Q psy15246         58 ------IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKK  100 (213)
Q Consensus        58 ------d~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~  100 (213)
                            +.+++..+++++||+++||++ +.+|+.   ..|..+. +|.++
T Consensus       151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~  196 (197)
T cd03020         151 AASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEAL  196 (197)
T ss_pred             ccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhh
Confidence                  122345688999999999997 778865   3466554 45554

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.96  E-value=0.00013  Score=51.71  Aligned_cols=97  Identities=14%  Similarity=0.139  Sum_probs=67.4

Q ss_pred             EeCCchhhhhhcCCCeEEEEE---EcCCCHHHHhHHHHHHHHHHHcC-CCcEEEEEEeCCCchhHHHhCCCcc----ccE
Q psy15246          5 QISEELDVEKYGKDKTAVVHF---YADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDLPKLSLNYKVSA----VPT   76 (213)
Q Consensus         5 ~l~~~~~~~~~~~~~~~vV~F---~a~wC~~C~~~~~~~~~l~~~~~-~~~v~~~~vd~~~~~~l~~~~~I~~----~Pt   76 (213)
                      ++|.++..... ..+..++++   |+..-..-..++..+.++|+.++ + ++.|+.+|.++.....+.||+..    +|+
T Consensus         3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~   80 (111)
T cd03073           3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDFSHELEEFGLDFSGGEKPV   80 (111)
T ss_pred             eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHHHHHHHHcCCCcccCCCCE
Confidence            45565444443 344444443   23344555778999999999999 7 89999999999888999999985    999


Q ss_pred             EEEEeCCCCccc-ccC-C-CchhHHHHHHHH
Q psy15246         77 FVILKNLKPVDR-VEG-A-DPESLDKKLQNQ  104 (213)
Q Consensus        77 i~~~~~g~~~~~-~~g-~-~~~~l~~~i~~~  104 (213)
                      +.+..... .++ ..+ . +.++|.+|+++.
T Consensus        81 ~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          81 VAIRTAKG-KKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             EEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence            99987322 222 222 3 445799998765

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.91  E-value=1.9e-06  Score=60.03  Aligned_cols=63  Identities=14%  Similarity=0.322  Sum_probs=45.6

Q ss_pred             ccCCCcccc-cchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        117 HVPYDTFDI-LQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       117 ~~~~~~f~~-l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      .++..+|+. +.+....++|.||+||        |.|.++       +.|+.+|++.++++++.+. ..++||+ .+|.+
T Consensus         5 ~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-i~~~Pt~-~~~~~   82 (104)
T cd03004           5 TLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQAN-IRAYPTI-RLYPG   82 (104)
T ss_pred             EcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcC-CCcccEE-EEEcC
Confidence            445666763 3343445899999999        444333       7789999999999887775 6778888 67777


Q ss_pred             C
Q psy15246        181 T  181 (213)
Q Consensus       181 g  181 (213)
                      |
T Consensus        83 g   83 (104)
T cd03004          83 N   83 (104)
T ss_pred             C
Confidence            7

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.91  E-value=4.6e-05  Score=59.83  Aligned_cols=85  Identities=12%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------------------------chhHHHhCCCc
Q psy15246         20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------------------------LPKLSLNYKVS   72 (213)
Q Consensus        20 ~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~I~   72 (213)
                      .+++.|+++||+.|....+.+.++.++++..++.++.|.++.                           +..+++.||+.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~  107 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI  107 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence            456689999999999999999999999875467777776552                           23578889886


Q ss_pred             ----c----ccEEEEEe-CCCCccccc-----CCCchhHHHHHHHH
Q psy15246         73 ----A----VPTFVILK-NLKPVDRVE-----GADPESLDKKLQNQ  104 (213)
Q Consensus        73 ----~----~Pti~~~~-~g~~~~~~~-----g~~~~~l~~~i~~~  104 (213)
                          +    .|+.+++. +|+......     |++.+++.+.|+.+
T Consensus       108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                2    34566665 676543332     44444676666654

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.89  E-value=4.5e-05  Score=50.54  Aligned_cols=60  Identities=17%  Similarity=0.112  Sum_probs=43.7

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc---hhHHHhCCCccccEEEEEeCCCCc
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL---PKLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~---~~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      .+.-++.|+.+||++|++.+..|++.       ++.+-.+|++++   .++....+..++|.+.  .+|+.+
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~i   68 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLI   68 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEE
Confidence            34446789999999999999999753       455666777655   3455667899999984  467543

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.89  E-value=6.7e-05  Score=58.71  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=54.0

Q ss_pred             CCCeEEEEEEc-CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFYA-DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~a-~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .++.++|.||+ .||+.|....+.+.++.+++...++.++.|+++.                            ..++++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            46789999995 8899999988999999999886567777776542                            235778


Q ss_pred             hCCCc------cccEEEEEe-CCCCcc
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVD   87 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~   87 (213)
                      .||+.      .+|+..+++ +|+...
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~G~i~~  141 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPKGMLRQ  141 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCCCEEEE
Confidence            88986      468888887 665443

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.87  E-value=2e-06  Score=59.62  Aligned_cols=65  Identities=14%  Similarity=0.206  Sum_probs=46.8

Q ss_pred             cccCCCcccccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        116 THVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       116 ~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      ..++..+|+........++|.||+||        |.+.++       +.|+.+||+.++++++.+. ..++||+ .+|-+
T Consensus         4 ~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~   81 (101)
T cd03003           4 VTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQG-VNSYPSL-YVFPS   81 (101)
T ss_pred             EEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcC-CCccCEE-EEEcC
Confidence            34566677744333455899999999        444333       6789999999998887776 6677887 67777


Q ss_pred             Ce
Q psy15246        181 TE  182 (213)
Q Consensus       181 g~  182 (213)
                      |+
T Consensus        82 g~   83 (101)
T cd03003          82 GM   83 (101)
T ss_pred             CC
Confidence            76

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.86  E-value=7.9e-05  Score=59.05  Aligned_cols=88  Identities=10%  Similarity=0.087  Sum_probs=60.2

Q ss_pred             CCCeEE-EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------------------------chhHHHh
Q psy15246         17 KDKTAV-VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------------------------LPKLSLN   68 (213)
Q Consensus        17 ~~~~~v-V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~   68 (213)
                      .++.++ +.|+++||+.|....+.|.++++++...++.++.|.++.                           +.+++++
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~  111 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR  111 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence            455554 488999999999999999999999864457777776552                           2356778


Q ss_pred             CCCc-------cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246         69 YKVS-------AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ  104 (213)
Q Consensus        69 ~~I~-------~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~  104 (213)
                      ||+.       ..|+.+++. +|+.....     .|++.+++.+.|+.+
T Consensus       112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8863       368787886 66544322     244444666666554

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.85  E-value=1.5e-05  Score=57.30  Aligned_cols=68  Identities=15%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             ccccCCCccccc-chhhhhhhheeccCC---C-CCCCC------------------CCceEEeccCCHHHHHHHHhhcCC
Q psy15246        115 ITHVPYDTFDIL-QDQEVREGLKIYSNW---P-TYPQV------------------VPYDTFDILQDQEVREGLKIYSNW  171 (213)
Q Consensus       115 ~~~~~~~~f~~l-~~~~~~~~v~~~apW---P-~~~~~------------------v~~~~~d~~~~~~~~~~l~~~~~~  171 (213)
                      +..++.++|+.. .+... -+|.||+||   | .+.++                  +.|+++|+++++++++.++ +.++
T Consensus        11 v~~lt~~nF~~~v~~~~~-~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~-I~~i   88 (120)
T cd03065          11 VIDLNEKNYKQVLKKYDV-LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLG-LDEE   88 (120)
T ss_pred             eeeCChhhHHHHHHhCCc-eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcC-Cccc
Confidence            355677888833 33333 455556554   3 24321                  7899999999999999888 7899


Q ss_pred             CcccceEeCCeEee
Q psy15246        172 PTYPQVYVNTELIG  185 (213)
Q Consensus       172 pt~p~i~i~g~~~g  185 (213)
                      ||+ .+|.||+.+.
T Consensus        89 PTl-~lfk~G~~v~  101 (120)
T cd03065          89 DSI-YVFKDDEVIE  101 (120)
T ss_pred             cEE-EEEECCEEEE
Confidence            999 8999998664

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>KOG2603|consensus

Probab=97.83  E-value=0.00018  Score=58.90  Aligned_cols=105  Identities=13%  Similarity=0.288  Sum_probs=78.1

Q ss_pred             ceEEeCCchhhhhhc---CCCeEEEEEEc----CCCHHHHhHHHHHHHHHHHcCC-------CcEEEEEEeCCCchhHHH
Q psy15246          2 SVVQISEELDVEKYG---KDKTAVVHFYA----DWSDECKHMNTLFDEMSKQSKY-------SQVVFARCIAEDLPKLSL   67 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~---~~~~~vV~F~a----~wC~~C~~~~~~~~~l~~~~~~-------~~v~~~~vd~~~~~~l~~   67 (213)
                      +|+.++++.....+.   .+=..+|.|.|    ..|.-|++...++.-++..+..       .++-|+.||.++.+++.+
T Consensus        41 ~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq  120 (331)
T KOG2603|consen   41 GVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQ  120 (331)
T ss_pred             CeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHH
Confidence            377788866655552   22346778887    5799999999999999887652       258899999999999999


Q ss_pred             hCCCccccEEEEEeCC--CC------cccccCCCchhHHHHHHHHhc
Q psy15246         68 NYKVSAVPTFVILKNL--KP------VDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        68 ~~~I~~~Pti~~~~~g--~~------~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      +++++++|++.+|...  ..      .....|..++++.+|+++..+
T Consensus       121 ~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk  167 (331)
T KOG2603|consen  121 QLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK  167 (331)
T ss_pred             HhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence            9999999999999522  11      112224455679999988753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.82  E-value=9.7e-05  Score=66.03  Aligned_cols=81  Identities=11%  Similarity=0.117  Sum_probs=65.6

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-h
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-S   96 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~   96 (213)
                      +..-+-.|+++.||+|......+++++...+  +|..-.+|..+.++++++|+|.++|++++  +|+.+  ..|..+. +
T Consensus       117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~  190 (515)
T TIGR03140       117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAE  190 (515)
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHH
Confidence            4455888999999999999999999999988  78888899999999999999999999965  55533  3455544 5


Q ss_pred             HHHHHHHH
Q psy15246         97 LDKKLQNQ  104 (213)
Q Consensus        97 l~~~i~~~  104 (213)
                      +.+.+...
T Consensus       191 ~~~~l~~~  198 (515)
T TIGR03140       191 LLEKLEET  198 (515)
T ss_pred             HHHHHhhc
Confidence            66666544

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.82  E-value=5.1e-05  Score=53.13  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=65.4

Q ss_pred             EeCCchhhhhhcCCCeEEEEEEcC--CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          5 QISEELDVEKYGKDKTAVVHFYAD--WSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         5 ~l~~~~~~~~~~~~~~~vV~F~a~--wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      .++.+.....++.++..++.|..+  -++.+....-.+-++.+.+++ .+..+.+......++..+|++..+|++++|++
T Consensus        13 ~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~   91 (107)
T PF07449_consen   13 RVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAERALAARFGVRRWPALVFFRD   91 (107)
T ss_dssp             EE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHHHHHHHHHT-TSSSEEEEEET
T ss_pred             eechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhHHHHHHHhCCccCCeEEEEEC
Confidence            445554555666777766655542  234555566688999999997 78888888778889999999999999999999


Q ss_pred             CCCcccccCCCc
Q psy15246         83 LKPVDRVEGADP   94 (213)
Q Consensus        83 g~~~~~~~g~~~   94 (213)
                      |+.+....|...
T Consensus        92 g~~lG~i~gi~d  103 (107)
T PF07449_consen   92 GRYLGAIEGIRD  103 (107)
T ss_dssp             TEEEEEEESSST
T ss_pred             CEEEEEecCeec
Confidence            998877777553

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.80  E-value=0.00021  Score=57.97  Aligned_cols=82  Identities=16%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-------------------------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-------------------------------------   59 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-------------------------------------   59 (213)
                      +.+.+++.|.-+.||+|+++.+.+..+.+.  + +|.+..+-.                                     
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~  192 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK  192 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence            456789999999999999999888776543  1 233322210                                     


Q ss_pred             -------------CCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHH
Q psy15246         60 -------------EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        60 -------------~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i  101 (213)
                                   .++..+++++||+++|++++-++...+....|..+. +|.+.+
T Consensus       193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l  248 (251)
T PRK11657        193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIM  248 (251)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHh
Confidence                         012346788999999999887632233446787765 576655

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.79  E-value=9.7e-05  Score=47.11  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=41.0

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|+++||++|++++..+++..       +.+..+|.+.+.+.    .+..+..++|++  |.+|+.+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~i   61 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFI   61 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence            56799999999999999988763       55667787776543    344577788877  4466544

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.78  E-value=0.00013  Score=55.53  Aligned_cols=40  Identities=18%  Similarity=0.397  Sum_probs=33.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC   57 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v   57 (213)
                      ..++.++.|+...||+|+.+.+.+..+.+++++ ++.+..+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~   53 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKV   53 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEc
Confidence            678899999999999999999999999988875 5555433

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.75  E-value=0.00016  Score=46.91  Aligned_cols=56  Identities=13%  Similarity=0.085  Sum_probs=40.6

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh---HHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK---LSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~---l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|..+||+.|.+.+..+++.       ++.+-.+|.+++.+   +....+..++|.+  |.+|+.+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i   61 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI   61 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence            5679999999999999888863       45566667665542   3344688999997  4567643

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=97.75  E-value=2.4e-05  Score=55.23  Aligned_cols=70  Identities=13%  Similarity=0.090  Sum_probs=52.8

Q ss_pred             cccCCCcccccchhhhhhhheeccCC----------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246        116 THVPYDTFDILQDQEVREGLKIYSNW----------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       116 ~~~~~~~f~~l~~~~~~~~v~~~apW----------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      +.++..+|+.+...+-...|.||++|          |.++++       +.|..+|+.+++++...++ +.+.||+ .+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~-V~sIPTl-i~f   90 (111)
T cd02965          13 PRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFG-VLRTPAL-LFF   90 (111)
T ss_pred             cccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcC-CCcCCEE-EEE
Confidence            44577888855555556888999997          444333       5688999999998887776 7789999 789


Q ss_pred             eCCeEeehH
Q psy15246        179 VNTELIGGL  187 (213)
Q Consensus       179 i~g~~~gg~  187 (213)
                      .+|+.++..
T Consensus        91 kdGk~v~~~   99 (111)
T cd02965          91 RDGRYVGVL   99 (111)
T ss_pred             ECCEEEEEE
Confidence            999877643

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.73  E-value=7.1e-05  Score=49.42  Aligned_cols=55  Identities=16%  Similarity=0.229  Sum_probs=39.6

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLKP   85 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~~   85 (213)
                      ++.|+.+||++|.+.+..+++.       ++.+-.+|++.+++.    .+..+..++|++  |.+|+.
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~   59 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVH   59 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence            3568899999999999999874       345566666666544    444578899997  446653

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.73  E-value=0.0012  Score=47.07  Aligned_cols=101  Identities=16%  Similarity=0.229  Sum_probs=69.8

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHH-HHcCC-CcEEEEEEeCC-----CchhHHHhCCC--cc
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMS-KQSKY-SQVVFARCIAE-----DLPKLSLNYKV--SA   73 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~-~~~~~-~~v~~~~vd~~-----~~~~l~~~~~I--~~   73 (213)
                      .+.|++-.+..++.+.+.++|.|=...  +--.-...|.+++ +.... .++-++.|-+.     +|.+|+++|+|  ..
T Consensus         6 ~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~   83 (126)
T PF07912_consen    6 CVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED   83 (126)
T ss_dssp             SEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred             eeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence            577888778888899999999997654  2233345677777 44332 37888888764     58899999999  57


Q ss_pred             ccEEEEEeCC-CCcccc--cC-CCchhHHHHHHHHh
Q psy15246         74 VPTFVILKNL-KPVDRV--EG-ADPESLDKKLQNQA  105 (213)
Q Consensus        74 ~Pti~~~~~g-~~~~~~--~g-~~~~~l~~~i~~~~  105 (213)
                      +|.+.+|..| ...-++  .| .+.++|++|+++..
T Consensus        84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t  119 (126)
T PF07912_consen   84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT  119 (126)
T ss_dssp             -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred             CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence            9999999955 332233  33 45558999998874

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>KOG4277|consensus

Probab=97.73  E-value=9.7e-06  Score=66.02  Aligned_cols=57  Identities=18%  Similarity=0.452  Sum_probs=45.7

Q ss_pred             hhhhhhhheeccCC--------CCCCCC----------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe---Eeeh
Q psy15246        128 DQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE---LIGG  186 (213)
Q Consensus       128 ~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~---~~gg  186 (213)
                      +... |+|.|||||        |.|.++          ++++++|++.-+.+..++. +.||||+ .+|.+|-   .-||
T Consensus        42 dddi-W~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefg-iqGYPTI-k~~kgd~a~dYRG~  118 (468)
T KOG4277|consen   42 DDDI-WFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFG-IQGYPTI-KFFKGDHAIDYRGG  118 (468)
T ss_pred             cCCe-EEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhc-cCCCceE-EEecCCeeeecCCC
Confidence            3444 999999999        888887          8899999999999999888 8899999 4554442   3466


Q ss_pred             H
Q psy15246        187 L  187 (213)
Q Consensus       187 ~  187 (213)
                      .
T Consensus       119 R  119 (468)
T KOG4277|consen  119 R  119 (468)
T ss_pred             c
Confidence            5

>PHA03050 glutaredoxin; Provisional

Probab=97.72  E-value=0.00015  Score=51.09  Aligned_cols=66  Identities=11%  Similarity=0.135  Sum_probs=44.2

Q ss_pred             hhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---c----hhHHHhCCCccccEEEEEeCCCC
Q psy15246         13 EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---L----PKLSLNYKVSAVPTFVILKNLKP   85 (213)
Q Consensus        13 ~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---~----~~l~~~~~I~~~Pti~~~~~g~~   85 (213)
                      +.+++++  ++.|..+|||+|++.+..|+++.-..+  .  +-.+|+++   .    .++.+..|.+++|++  |-+|+.
T Consensus         8 ~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~--~--~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~   79 (108)
T PHA03050          8 QRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG--A--YEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTS   79 (108)
T ss_pred             HHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC--C--cEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEE
Confidence            3444444  567999999999999999988754433  2  34445443   2    245566788999998  446654


Q ss_pred             c
Q psy15246         86 V   86 (213)
Q Consensus        86 ~   86 (213)
                      +
T Consensus        80 i   80 (108)
T PHA03050         80 I   80 (108)
T ss_pred             E
Confidence            4

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.71  E-value=5.1e-05  Score=48.78  Aligned_cols=42  Identities=19%  Similarity=0.373  Sum_probs=36.5

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDI  189 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~  189 (213)
                      +.|..+|+..+++..+.+.+..+..++|+++++|+.++|++.
T Consensus        25 i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~   66 (74)
T TIGR02196        25 IAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP   66 (74)
T ss_pred             CeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence            788999999988877777777889999999999999999753

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.70  E-value=0.00044  Score=51.67  Aligned_cols=43  Identities=14%  Similarity=0.196  Sum_probs=35.8

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHc--CCCcEEEEEEeC
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQS--KYSQVVFARCIA   59 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~--~~~~v~~~~vd~   59 (213)
                      ...+..|+.|+...||+|.++.+.+.++.+.+  ++ ++.+...+.
T Consensus        10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~   54 (162)
T PF13462_consen   10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV   54 (162)
T ss_dssp             TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred             CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence            35678899999999999999999999998888  55 788887764

...

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.70  E-value=0.00011  Score=51.05  Aligned_cols=56  Identities=27%  Similarity=0.157  Sum_probs=38.6

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh-------HHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK-------LSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~-------l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|..+|||+|++.+..|+++       ++.+..+|++.+++       +.+..|..++|.+  |-+|+.+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i   72 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV   72 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence            5669999999999999988775       24444556554432       3444578899997  5567544

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=97.69  E-value=1.9e-05  Score=54.58  Aligned_cols=63  Identities=13%  Similarity=0.295  Sum_probs=44.1

Q ss_pred             cccCCCcccccchhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        116 THVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       116 ~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ..++.++|+.+....  ++|.|||||        |.|.++        +.++.+|+..++.+++.+. ..++||+ .++.
T Consensus         4 ~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~-i~~~Pt~-~~~~   79 (101)
T cd02994           4 VELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFF-VTALPTI-YHAK   79 (101)
T ss_pred             EEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcC-CcccCEE-EEeC
Confidence            445667777443322  789999999        554333        6779999999888877665 6677777 5667


Q ss_pred             CCe
Q psy15246        180 NTE  182 (213)
Q Consensus       180 ~g~  182 (213)
                      +|+
T Consensus        80 ~g~   82 (101)
T cd02994          80 DGV   82 (101)
T ss_pred             CCC
Confidence            775

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.69  E-value=0.0005  Score=61.52  Aligned_cols=149  Identities=15%  Similarity=0.160  Sum_probs=93.2

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCc-ccccC-CCc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPV-DRVEG-ADP   94 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~-~~~~g-~~~   94 (213)
                      -.+++-+.++.+.|+.|..+...++++++.-+  ++.+-..+..           ...|++.+.++|+.. -++.| +..
T Consensus        17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g   83 (517)
T PRK15317         17 LERPIELVASLDDSEKSAELKELLEEIASLSD--KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMG   83 (517)
T ss_pred             CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCcc
Confidence            34556565666689999999999999998776  6776442211           347999998876432 34455 555


Q ss_pred             hhHHHHHHHHhccCCCCCCcccccCCCcccccchhh-hhhhheeccC-CCCCCCC-------------CCceEEeccCCH
Q psy15246         95 ESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQE-VREGLKIYSN-WPTYPQV-------------VPYDTFDILQDQ  159 (213)
Q Consensus        95 ~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~-~~~~v~~~ap-WP~~~~~-------------v~~~~~d~~~~~  159 (213)
                      .++..||...++- .|.+   ..++....+.+..-. ...+..|++| ||-+|++             +.+..+|....+
T Consensus        84 ~Ef~s~i~~i~~~-~~~~---~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~  159 (517)
T PRK15317         84 HEFTSLVLALLQV-GGHP---PKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQ  159 (517)
T ss_pred             HHHHHHHHHHHHh-cCCC---CCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCH
Confidence            6899999888752 1111   223333333333211 1123345555 4667665             667778888888


Q ss_pred             HHHHHHHhhcCCCcccceEeCCeEeeh
Q psy15246        160 EVREGLKIYSNWPTYPQVYVNTELIGG  186 (213)
Q Consensus       160 ~~~~~l~~~~~~pt~p~i~i~g~~~gg  186 (213)
                      ++.+.+.    +-++|++|+||+++..
T Consensus       160 ~~~~~~~----v~~VP~~~i~~~~~~~  182 (517)
T PRK15317        160 DEVEARN----IMAVPTVFLNGEEFGQ  182 (517)
T ss_pred             hHHHhcC----CcccCEEEECCcEEEe
Confidence            8766443    3489999999975543

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.66  E-value=0.00017  Score=46.90  Aligned_cols=55  Identities=16%  Similarity=0.141  Sum_probs=40.2

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH----HhCCCc-cccEEEEEeCCCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS----LNYKVS-AVPTFVILKNLKP   85 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~----~~~~I~-~~Pti~~~~~g~~   85 (213)
                      ++.|+.+||++|.+.+..|++.       ++.+-.+|++.+++..    +..+.. ++|++  |.+|+.
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~   61 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVH   61 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEE
Confidence            5678999999999999988873       4667777887765443    345766 89987  456653

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=97.64  E-value=2.1e-05  Score=55.85  Aligned_cols=52  Identities=10%  Similarity=0.162  Sum_probs=42.3

Q ss_pred             hhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        132 REGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ..+|.|||+|        |.++++       +.|.++|+++++++.+.+. +.+.||+ .+|-+|+.++
T Consensus        16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~-V~~iPTf-~~fk~G~~v~   82 (114)
T cd02954          16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYE-LYDPPTV-MFFFRNKHMK   82 (114)
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcC-CCCCCEE-EEEECCEEEE
Confidence            3788999999        545444       5789999999999987776 7789999 8999999774

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.60  E-value=0.00032  Score=47.25  Aligned_cols=59  Identities=17%  Similarity=0.205  Sum_probs=44.3

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--C------------------------------chhHHHhC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE--D------------------------------LPKLSLNY   69 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--~------------------------------~~~l~~~~   69 (213)
                      +..|+.+.|++|..+.+.++++....++ ++.+......  .                              +...++++
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL   79 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999998866665 5666555432  1                              12456788


Q ss_pred             CCccccEEEEEe
Q psy15246         70 KVSAVPTFVILK   81 (213)
Q Consensus        70 ~I~~~Pti~~~~   81 (213)
                      |+.++||+++..
T Consensus        80 g~~g~Pt~v~~~   91 (98)
T cd02972          80 GVTGTPTFVVNG   91 (98)
T ss_pred             CCCCCCEEEECC
Confidence            999999998754

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.60  E-value=0.00033  Score=46.63  Aligned_cols=77  Identities=16%  Similarity=0.215  Sum_probs=54.5

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC--CCcccccC-CCchhHH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL--KPVDRVEG-ADPESLD   98 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g--~~~~~~~g-~~~~~l~   98 (213)
                      ++.|..+.|+-|..+...++++....+   +.+-.||+++++++..+|+. .+|.+.+-..+  .......+ .+.+.|.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~~---~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~   77 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEFP---FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLR   77 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTST---CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhcC---ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHH
Confidence            678999999999999999998766554   78899999999999999995 79996653211  11122223 3334677


Q ss_pred             HHHH
Q psy15246         99 KKLQ  102 (213)
Q Consensus        99 ~~i~  102 (213)
                      ++|+
T Consensus        78 ~~L~   81 (81)
T PF05768_consen   78 AWLE   81 (81)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            7764

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.60  E-value=0.00026  Score=46.02  Aligned_cols=56  Identities=20%  Similarity=0.265  Sum_probs=42.3

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|+.+||++|++.+..|++.       ++.+..+|++++++    +.+..+-..+|++  |.+|+.+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~-------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~i   62 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK-------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLV   62 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC-------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence            5678999999999999988873       56777788887664    5555677889998  4466543

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.57  E-value=1.6e-05  Score=55.77  Aligned_cols=65  Identities=14%  Similarity=0.403  Sum_probs=45.5

Q ss_pred             cccCCCcccccchhhhhhhheeccCC--------CCCCCC-------------CCceEEeccCCHHHHHHHHhhcCCCcc
Q psy15246        116 THVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------------VPYDTFDILQDQEVREGLKIYSNWPTY  174 (213)
Q Consensus       116 ~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------------v~~~~~d~~~~~~~~~~l~~~~~~pt~  174 (213)
                      ..++.++|+...+.....+|.|||||        |.|.++             +.|+.+||+.++++++.++ ..++||+
T Consensus         4 ~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~-v~~~Ptl   82 (108)
T cd02996           4 VSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYR-INKYPTL   82 (108)
T ss_pred             EEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCC-CCcCCEE
Confidence            34566777744344445789999999        555322             4678999999988887775 6677777


Q ss_pred             cceEeCCe
Q psy15246        175 PQVYVNTE  182 (213)
Q Consensus       175 p~i~i~g~  182 (213)
                       .+|-+|+
T Consensus        83 -~~~~~g~   89 (108)
T cd02996          83 -KLFRNGM   89 (108)
T ss_pred             -EEEeCCc
Confidence             5677776

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG0910|consensus

Probab=97.55  E-value=8.3e-06  Score=60.09  Aligned_cols=70  Identities=21%  Similarity=0.351  Sum_probs=52.5

Q ss_pred             cCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        118 VPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       118 ~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      .+.+.|+ .+.+.+...+|+|||+|        |..+++       +++.++|++++.++..... ++-.||+ .+|.||
T Consensus        48 ~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~-I~avPtv-lvfknG  125 (150)
T KOG0910|consen   48 QSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYE-ISAVPTV-LVFKNG  125 (150)
T ss_pred             cCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcc-eeeeeEE-EEEECC
Confidence            3455565 34456667899999999        544444       7899999999999988777 6777888 789999


Q ss_pred             e----EeehHHH
Q psy15246        182 E----LIGGLDI  189 (213)
Q Consensus       182 ~----~~gg~d~  189 (213)
                      +    ++|+.|.
T Consensus       126 e~~d~~vG~~~~  137 (150)
T KOG0910|consen  126 EKVDRFVGAVPK  137 (150)
T ss_pred             EEeeeecccCCH
Confidence            7    5566653

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.54  E-value=0.00011  Score=47.71  Aligned_cols=40  Identities=13%  Similarity=0.334  Sum_probs=35.7

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe-EeehHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE-LIGGLD  188 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~-~~gg~d  188 (213)
                      +.|..+|+..+++....+++ .|+.++|+++++|+ ++||++
T Consensus        24 i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~   64 (72)
T TIGR02194        24 IAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGDLSWSGFR   64 (72)
T ss_pred             CceEEEECCCCHHHHHHHHH-cCCcccCEEEECCCcEEeccC
Confidence            89999999999988888886 48899999999875 999987

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.53  E-value=0.0011  Score=59.28  Aligned_cols=149  Identities=16%  Similarity=0.183  Sum_probs=90.7

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCC-cccccC-CCch
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKP-VDRVEG-ADPE   95 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~-~~~~~g-~~~~   95 (213)
                      .+++-+.++.+.|+.|..+...++++++.-+  ++.+...+.+.          ...|++.++.+|+. --++.| +...
T Consensus        18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~   85 (515)
T TIGR03140        18 ENPVTLVLSAGSHEKSKELLELLDEIASLSD--KISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGH   85 (515)
T ss_pred             CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC--CeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcH
Confidence            4455455555579999999999999988776  77775434222          34699999877752 234455 5556


Q ss_pred             hHHHHHHHHhccCCCCCCcccccCCCcccccchhhhh-hhheecc-CCCCCCCC-------------CCceEEeccCCHH
Q psy15246         96 SLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVR-EGLKIYS-NWPTYPQV-------------VPYDTFDILQDQE  160 (213)
Q Consensus        96 ~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~~~-~~v~~~a-pWP~~~~~-------------v~~~~~d~~~~~~  160 (213)
                      ++..||...++- .+.+   ..++....+.+..-... .+..|++ .||-+|++             +....+|....++
T Consensus        86 Ef~s~i~~i~~~-~~~~---~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~  161 (515)
T TIGR03140        86 EFTSLVLAILQV-GGHG---PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD  161 (515)
T ss_pred             HHHHHHHHHHHh-cCCC---CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH
Confidence            899999887752 2222   22334443333321111 2233444 35666665             5566677777777


Q ss_pred             HHHHHHhhcCCCcccceEeCCeEeeh
Q psy15246        161 VREGLKIYSNWPTYPQVYVNTELIGG  186 (213)
Q Consensus       161 ~~~~l~~~~~~pt~p~i~i~g~~~gg  186 (213)
                      +.+.   |. +-++|++|+||++++.
T Consensus       162 ~~~~---~~-v~~VP~~~i~~~~~~~  183 (515)
T TIGR03140       162 EVEA---LG-IQGVPAVFLNGEEFHN  183 (515)
T ss_pred             HHHh---cC-CcccCEEEECCcEEEe
Confidence            6543   33 3489999999976554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=97.52  E-value=0.0014  Score=49.94  Aligned_cols=131  Identities=15%  Similarity=0.249  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC-CCcccccC--CCchhHHHHHHHHhccCCCC
Q psy15246         35 HMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL-KPVDRVEG--ADPESLDKKLQNQASTMKNQ  111 (213)
Q Consensus        35 ~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g-~~~~~~~g--~~~~~l~~~i~~~~~~~kg~  111 (213)
                      .....|.++|+.+.+ .+.|+.+.   +.++++++++.. |++++|+++ +....+.|  .+.++|.+||....-     
T Consensus         7 ~~~~~f~~~A~~~~~-~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~-----   76 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKG-DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF-----   76 (184)
T ss_dssp             HHHHHHHHHHHHHTT-TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS-----
T ss_pred             HHHHHHHHHHHhCcC-CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc-----
Confidence            356688999999997 78999887   678999999999 999999974 33334555  455689999999853     


Q ss_pred             CCcccccCCCcccccchhhhh-hhheeccC-------C--------CCCCCCCCceEEeccCCHHHHHHHHhhcCCCccc
Q psy15246        112 PSNITHVPYDTFDILQDQEVR-EGLKIYSN-------W--------PTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYP  175 (213)
Q Consensus       112 p~~~~~~~~~~f~~l~~~~~~-~~v~~~ap-------W--------P~~~~~v~~~~~d~~~~~~~~~~l~~~~~~pt~p  175 (213)
                      |. +..++..++..+-+.... .++-++..       |        ..+..-+.|+.+|+...++..+.+. ... ..+|
T Consensus        77 P~-v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~-i~~-~~~P  153 (184)
T PF13848_consen   77 PL-VPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFG-IDE-DDLP  153 (184)
T ss_dssp             TS-CEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTT-TTT-SSSS
T ss_pred             cc-ccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcC-CCC-ccCC
Confidence            22 233444444433222211 11111110       0        1111126789999997777665553 331 3556


Q ss_pred             ceE
Q psy15246        176 QVY  178 (213)
Q Consensus       176 ~i~  178 (213)
                      ++.
T Consensus       154 ~~v  156 (184)
T PF13848_consen  154 ALV  156 (184)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            555

...

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=97.50  E-value=0.00055  Score=47.72  Aligned_cols=86  Identities=14%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             EEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCc-ccc
Q psy15246          4 VQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVS-AVP   75 (213)
Q Consensus         4 ~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~-~~P   75 (213)
                      ..|++ +...+++  +.++++++.=.++.||-+......|++.....++ .+.++.+|+-++++    ++.+|||. .-|
T Consensus         2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP   80 (105)
T PF11009_consen    2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEYRPVSNAIAEDFGVKHESP   80 (105)
T ss_dssp             -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHHT----SS
T ss_pred             CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeCchhHHHHHHHhCCCcCCC
Confidence            35666 3333444  4588999988999999999999999999998885 59999999987664    67899998 679


Q ss_pred             EEEEEeCCCCccccc
Q psy15246         76 TFVILKNLKPVDRVE   90 (213)
Q Consensus        76 ti~~~~~g~~~~~~~   90 (213)
                      -++++++|+.+....
T Consensus        81 Q~ili~~g~~v~~aS   95 (105)
T PF11009_consen   81 QVILIKNGKVVWHAS   95 (105)
T ss_dssp             EEEEEETTEEEEEEE
T ss_pred             cEEEEECCEEEEECc
Confidence            999999999876443

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PHA02278 thioredoxin-like protein

Probab=97.48  E-value=4.6e-05  Score=53.26  Aligned_cols=53  Identities=13%  Similarity=0.151  Sum_probs=40.0

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCC----HHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQD----QEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~----~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ....+|.|||||        |.++++       ++|..+|++.+    +++.+.++ ..+.||+ .+|-+|+.+
T Consensus        14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~-I~~iPT~-i~fk~G~~v   85 (103)
T PHA02278         14 KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD-IMSTPVL-IGYKDGQLV   85 (103)
T ss_pred             CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC-CccccEE-EEEECCEEE
Confidence            344789999999        666554       46889999986    56666555 7788999 788999855

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=97.47  E-value=3.4e-05  Score=57.74  Aligned_cols=69  Identities=20%  Similarity=0.422  Sum_probs=49.0

Q ss_pred             ccccCCCcccc-cc-hhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcC------
Q psy15246        115 ITHVPYDTFDI-LQ-DQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSN------  170 (213)
Q Consensus       115 ~~~~~~~~f~~-l~-~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~------  170 (213)
                      +..++.++|+. +. +....++|.||+||        |.++++        +.|+.+|+++++++++.++ ...      
T Consensus        30 v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~-V~~~~~v~~  108 (152)
T cd02962          30 IKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFR-VSTSPLSKQ  108 (152)
T ss_pred             cEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcC-ceecCCcCC
Confidence            34455566663 32 22345799999999        544333        6689999999999988877 444      


Q ss_pred             CCcccceEeCCeEee
Q psy15246        171 WPTYPQVYVNTELIG  185 (213)
Q Consensus       171 ~pt~p~i~i~g~~~g  185 (213)
                      +||+ .+|.+|+.++
T Consensus       109 ~PT~-ilf~~Gk~v~  122 (152)
T cd02962         109 LPTI-ILFQGGKEVA  122 (152)
T ss_pred             CCEE-EEEECCEEEE
Confidence            8998 7899998664

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00043  Score=46.04  Aligned_cols=51  Identities=20%  Similarity=0.231  Sum_probs=37.7

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-----hHHHhC-CCccccEEEE
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-----KLSLNY-KVSAVPTFVI   79 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~I~~~Pti~~   79 (213)
                      ++.|..++||+|++.+..|.+.       ++.+..+|.+.+.     +..++. |.+++|.|++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~-------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK-------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc-------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            5678999999999999988853       4666666666544     334444 7899999855

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=97.43  E-value=4e-05  Score=61.00  Aligned_cols=82  Identities=15%  Similarity=0.369  Sum_probs=57.6

Q ss_pred             cccccCCCcccccc-hh----hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCc
Q psy15246        114 NITHVPYDTFDILQ-DQ----EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPT  173 (213)
Q Consensus       114 ~~~~~~~~~f~~l~-~~----~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt  173 (213)
                      .+..++.++|+.+. .+    +..++|.||+||        |.|+++       +.++.+|++.++++++.+. +.++||
T Consensus        31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~-I~~~PT  109 (224)
T PTZ00443         31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFA-IKGYPT  109 (224)
T ss_pred             CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcC-CCcCCE
Confidence            35667778887443 21    345899999999        555554       6788999999999888776 778899


Q ss_pred             ccceEeCCeEe---eh---HHHHHHHHHcC
Q psy15246        174 YPQVYVNTELI---GG---LDIIKELQVAN  197 (213)
Q Consensus       174 ~p~i~i~g~~~---gg---~d~~~~~~~~~  197 (213)
                      + .+|.+|+.+   +|   .+.+.+..+.+
T Consensus       110 l-~~f~~G~~v~~~~G~~s~e~L~~fi~~~  138 (224)
T PTZ00443        110 L-LLFDKGKMYQYEGGDRSTEKLAAFALGD  138 (224)
T ss_pred             E-EEEECCEEEEeeCCCCCHHHHHHHHHHH
Confidence            8 678889865   34   45555554433

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=97.41  E-value=0.00061  Score=53.61  Aligned_cols=41  Identities=12%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEe
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCI   58 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd   58 (213)
                      .+++-||+|+.-.||||..+.+.+   +.+.+.+++ ++.+..+.
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~   79 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYH   79 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEec
Confidence            357789999999999999999876   778888876 55555443

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.29  E-value=8.3e-05  Score=51.10  Aligned_cols=66  Identities=15%  Similarity=0.348  Sum_probs=49.1

Q ss_pred             ccCCCccccc-chhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        117 HVPYDTFDIL-QDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       117 ~~~~~~f~~l-~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      .++..+|+.. .+.....+|.||++|        |.+.++       +.|+.+|+.++.++++.+. ..++||+ .+|.+
T Consensus         3 ~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~   80 (103)
T PF00085_consen    3 VLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYG-VKSVPTI-IFFKN   80 (103)
T ss_dssp             EESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTT-CSSSSEE-EEEET
T ss_pred             ECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccC-CCCCCEE-EEEEC
Confidence            3456677633 333556889999999        444333       7889999999988888777 7789998 78888


Q ss_pred             CeEe
Q psy15246        181 TELI  184 (213)
Q Consensus       181 g~~~  184 (213)
                      |+.+
T Consensus        81 g~~~   84 (103)
T PF00085_consen   81 GKEV   84 (103)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            8755

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PRK10638 glutaredoxin 3; Provisional

Probab=97.22  E-value=0.0013  Score=43.92  Aligned_cols=56  Identities=13%  Similarity=0.179  Sum_probs=40.6

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|..+||++|++.+..+++.       ++.+..+|++.+++    +.+..+...+|++  +.+|+.+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i   63 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHI   63 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence            5578889999999999988874       45566677776553    4455688899987  4466543

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=97.22  E-value=0.0016  Score=45.00  Aligned_cols=50  Identities=12%  Similarity=0.063  Sum_probs=36.3

Q ss_pred             CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCCCc
Q psy15246         28 DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        28 ~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ||||+|++.+..|.++       ++.+..+|+++++++    .+..|..++|.+  |.+|+.+
T Consensus        25 ~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~~i   78 (97)
T TIGR00365        25 PQCGFSARAVQILKAC-------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGEFV   78 (97)
T ss_pred             CCCchHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence            9999999999988875       355667788766543    345577789987  4566543

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>KOG0912|consensus

Probab=97.19  E-value=9.5e-05  Score=60.41  Aligned_cols=64  Identities=19%  Similarity=0.496  Sum_probs=46.8

Q ss_pred             CCcccccchhhhhhhheeccCC--------CCCCCC------------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        120 YDTFDILQDQEVREGLKIYSNW--------PTYPQV------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       120 ~~~f~~l~~~~~~~~v~~~apW--------P~~~~~------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ..+++.+-+.....+|.|||.|        |.|++.            +-.|.|||+.+..+..... ++.|||+ .+|.
T Consensus         3 ~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~-I~KyPTl-Kvfr   80 (375)
T KOG0912|consen    3 SENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYH-INKYPTL-KVFR   80 (375)
T ss_pred             cccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhc-cccCcee-eeee
Confidence            3455533333334899999999        444333            6679999999888877776 7899999 7999


Q ss_pred             CCeEee
Q psy15246        180 NTELIG  185 (213)
Q Consensus       180 ~g~~~g  185 (213)
                      ||...-
T Consensus        81 nG~~~~   86 (375)
T KOG0912|consen   81 NGEMMK   86 (375)
T ss_pred             ccchhh
Confidence            998554

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=97.17  E-value=0.0012  Score=44.79  Aligned_cols=49  Identities=8%  Similarity=0.054  Sum_probs=35.8

Q ss_pred             CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCCC
Q psy15246         28 DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLKP   85 (213)
Q Consensus        28 ~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~~   85 (213)
                      |||++|++.+..|++.       ++.+..+|++.++++    .+..|-.++|.+  |.+|+.
T Consensus        21 ~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~   73 (90)
T cd03028          21 PRCGFSRKVVQILNQL-------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGEL   73 (90)
T ss_pred             CCCcHHHHHHHHHHHc-------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence            7999999999988885       355666676665544    445688899997  456754

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>KOG3170|consensus

Probab=97.15  E-value=0.0024  Score=49.28  Aligned_cols=97  Identities=20%  Similarity=0.258  Sum_probs=69.5

Q ss_pred             eEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      |..|+. ++..++.  +.+-.|+|+.|...-+.|.-+...++.++..|+  .++|+++=.+..   ...|-=...||+++
T Consensus        93 V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp--~iKFVki~at~c---IpNYPe~nlPTl~V  167 (240)
T KOG3170|consen   93 VFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP--QIKFVKIPATTC---IPNYPESNLPTLLV  167 (240)
T ss_pred             eeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC--cceEEecccccc---cCCCcccCCCeEEE
Confidence            667766 4555553  556677889999999999999999999999999  799998865543   22344567899999


Q ss_pred             EeCCCCccc------ccCCCch--hHHHHHHHH
Q psy15246         80 LKNLKPVDR------VEGADPE--SLDKKLQNQ  104 (213)
Q Consensus        80 ~~~g~~~~~------~~g~~~~--~l~~~i~~~  104 (213)
                      |..|.....      ++|.+..  ++..++-+.
T Consensus       168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa  200 (240)
T KOG3170|consen  168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA  200 (240)
T ss_pred             eecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence            999865443      3344332  566555443

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=97.14  E-value=0.00015  Score=49.46  Aligned_cols=53  Identities=8%  Similarity=0.186  Sum_probs=39.8

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      +...+|.||+||        |.++++       +.++.+|++.++++++.++ ..++||+ .+|-+|+.+
T Consensus        12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~-i~~~Pt~-~~~~~g~~~   79 (96)
T cd02956          12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFG-VQALPTV-YLFAAGQPV   79 (96)
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcC-CCCCCEE-EEEeCCEEe
Confidence            445889999999        444333       5679999999999988776 6678888 566788654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=97.12  E-value=0.00019  Score=50.75  Aligned_cols=53  Identities=21%  Similarity=0.320  Sum_probs=39.4

Q ss_pred             hhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      +..++|.||+||        |.+.++        +.++.+|+..++++++.+. ..++||+ .+|.+|+.+
T Consensus        24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~-V~~~Pt~-~i~~~g~~~   92 (111)
T cd02963          24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLG-AHSVPAI-VGIINGQVT   92 (111)
T ss_pred             CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcC-CccCCEE-EEEECCEEE
Confidence            445899999999        444333        5679999999888876665 6677887 677888755

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.10  E-value=0.0049  Score=42.34  Aligned_cols=97  Identities=16%  Similarity=0.054  Sum_probs=67.8

Q ss_pred             EeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCc----cccE-
Q psy15246          5 QISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--LPKLSLNYKVS----AVPT-   76 (213)
Q Consensus         5 ~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~----~~Pt-   76 (213)
                      .|++ ..+...+.....++|.|..+--..-.. ...+.++|+..+| .-.++.|||..  ...+|+++.|.    --|. 
T Consensus         5 ~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~   82 (112)
T cd03067           5 DISDHKDFKKLLRTRNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKG-QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVE   82 (112)
T ss_pred             cccchHHHHHHHhhcCcEEEEEecchhhHHHH-HHHHHHHHHHhcC-ceeEEEEecCChHHHHHHHHHccCCCCCCCcch
Confidence            4566 445555667777888777666554444 4489999999998 78899999987  77899999998    5553 


Q ss_pred             EEEEeCCCCcccccCCCch-hHHHHHHH
Q psy15246         77 FVILKNLKPVDRVEGADPE-SLDKKLQN  103 (213)
Q Consensus        77 i~~~~~g~~~~~~~g~~~~-~l~~~i~~  103 (213)
                      +.-|++|.-...+...... ++..|++.
T Consensus        83 LkHYKdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          83 LKHYKDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             hhcccCCCccccccchhhHHHHHHHhhC
Confidence            5567888755544443333 67777653

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=97.09  E-value=0.00016  Score=50.47  Aligned_cols=64  Identities=17%  Similarity=0.438  Sum_probs=42.7

Q ss_pred             ccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccC--CHHHHHHHHhhcCCCcccceE
Q psy15246        117 HVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQ--DQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       117 ~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~--~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      .++.++|+ .+.+.+...+|.||+||        |.+.++       +.++.+|+..  +.++++.+. ..++||+ .+|
T Consensus         4 ~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~-i~~~Pt~-~~~   81 (109)
T cd03002           4 ELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYG-VQGFPTL-KVF   81 (109)
T ss_pred             EcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcC-CCcCCEE-EEE
Confidence            34556666 33344444889999999        444333       5778899998  677777665 6667777 566


Q ss_pred             eCCe
Q psy15246        179 VNTE  182 (213)
Q Consensus       179 i~g~  182 (213)
                      -+|+
T Consensus        82 ~~~~   85 (109)
T cd03002          82 RPPK   85 (109)
T ss_pred             eCCC
Confidence            6664

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=9.8e-05  Score=60.29  Aligned_cols=69  Identities=17%  Similarity=0.364  Sum_probs=51.0

Q ss_pred             cccCCCccc--ccch-hhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccce
Q psy15246        116 THVPYDTFD--ILQD-QEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQV  177 (213)
Q Consensus       116 ~~~~~~~f~--~l~~-~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i  177 (213)
                      ..++..+|.  ++.. .....+|.||+||        |+.+++       ..++++||+.++.+...+. +...||+ .+
T Consensus        26 ~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfg-iqsIPtV-~a  103 (304)
T COG3118          26 KDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFG-VQSIPTV-YA  103 (304)
T ss_pred             eechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhC-cCcCCeE-EE
Confidence            455667776  3332 3446889999999        444444       6779999999999988887 6778888 78


Q ss_pred             EeCCeEeeh
Q psy15246        178 YVNTELIGG  186 (213)
Q Consensus       178 ~i~g~~~gg  186 (213)
                      |++|+-|-|
T Consensus       104 f~dGqpVdg  112 (304)
T COG3118         104 FKDGQPVDG  112 (304)
T ss_pred             eeCCcCccc
Confidence            899985544

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.04  E-value=0.00056  Score=43.69  Aligned_cols=42  Identities=26%  Similarity=0.519  Sum_probs=36.9

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDI  189 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~  189 (213)
                      ++|..+|+..+.+..+.+.+.++..++|+++++|+.++|.+.
T Consensus        25 i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976          25 IPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence            788999998888888888877788899999999999999874

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=97.01  E-value=0.00014  Score=51.57  Aligned_cols=58  Identities=19%  Similarity=0.208  Sum_probs=41.3

Q ss_pred             hhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHH
Q psy15246        131 VREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIK  191 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~  191 (213)
                      ...+|.||+||        |.++++      +.|..+|+..+ ++.+.+. ..+.||+ .+|.+|+.++-.....
T Consensus        25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~-i~~~Pt~-~~f~~G~~v~~~~G~~   96 (113)
T cd02957          25 TRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLD-IKVLPTL-LVYKNGELIDNIVGFE   96 (113)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcC-CCcCCEE-EEEECCEEEEEEecHH
Confidence            44778999999        333333      67889999877 7766665 6778888 7889998776444333

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=96.98  E-value=0.00019  Score=49.36  Aligned_cols=64  Identities=23%  Similarity=0.443  Sum_probs=43.1

Q ss_pred             ccCCCcccccchhhhhhhheeccCC--------CCCCCC----------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246        117 HVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       117 ~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      .++.++|+...... ..+|.||++|        |.+.++          +.++.+|++.+..+++.+. ..++||+ .+|
T Consensus         4 ~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~   80 (102)
T cd03005           4 ELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQ-VRGYPTL-LLF   80 (102)
T ss_pred             ECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcC-CCcCCEE-EEE
Confidence            34556666333333 3889999999        444333          5679999999888877765 6677777 566


Q ss_pred             eCCeE
Q psy15246        179 VNTEL  183 (213)
Q Consensus       179 i~g~~  183 (213)
                      .+|+.
T Consensus        81 ~~g~~   85 (102)
T cd03005          81 KDGEK   85 (102)
T ss_pred             eCCCe
Confidence            77763

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=96.96  E-value=0.00089  Score=42.49  Aligned_cols=35  Identities=9%  Similarity=0.105  Sum_probs=27.1

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeeh
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG  186 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg  186 (213)
                      +.|..+|+.+++++.+.    .+..++|+++++|++++-
T Consensus        31 i~~~~id~~~~~~l~~~----~~i~~vPti~i~~~~~~~   65 (67)
T cd02973          31 ISAEMIDAAEFPDLADE----YGVMSVPAIVINGKVEFV   65 (67)
T ss_pred             eEEEEEEcccCHhHHHH----cCCcccCEEEECCEEEEe
Confidence            67888999888765443    456789999999998763

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PRK09381 trxA thioredoxin; Provisional

Probab=96.95  E-value=0.00029  Score=49.33  Aligned_cols=67  Identities=18%  Similarity=0.353  Sum_probs=43.5

Q ss_pred             ccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        117 HVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       117 ~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      .++..+|. .+.+....++|.||+||        |.+.++       +.++.+|++.++.+.+.+. ..++||+ .+|-+
T Consensus         7 ~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~   84 (109)
T PRK09381          7 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTL-LLFKN   84 (109)
T ss_pred             eeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCC-CCcCCEE-EEEeC
Confidence            34445555 22333445899999999        333332       6789999999888766554 5556665 45678


Q ss_pred             CeEee
Q psy15246        181 TELIG  185 (213)
Q Consensus       181 g~~~g  185 (213)
                      |+.++
T Consensus        85 G~~~~   89 (109)
T PRK09381         85 GEVAA   89 (109)
T ss_pred             CeEEE
Confidence            88663

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=96.95  E-value=0.00019  Score=49.42  Aligned_cols=61  Identities=18%  Similarity=0.334  Sum_probs=40.2

Q ss_pred             CCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        119 PYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       119 ~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      +..+|+ .+.+.....+|.||+||        |.|.++       +.++.+|+..++++++.+. ..++||+ .+|.+|
T Consensus         6 ~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~-i~~~P~~-~~~~~~   82 (103)
T cd03001           6 TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYG-VRGFPTI-KVFGAG   82 (103)
T ss_pred             CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCC-CCccCEE-EEECCC
Confidence            445555 22333334788999999        333332       6789999999888887765 5667776 456666

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PTZ00051 thioredoxin; Provisional

Probab=96.93  E-value=0.00014  Score=49.86  Aligned_cols=56  Identities=23%  Similarity=0.465  Sum_probs=40.6

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehH
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL  187 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~  187 (213)
                      +...+|.||++|        |.+.++      +.|..+|+....++++.+. +.+.||+ .+|.+|+.++.+
T Consensus        18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~~~~   87 (98)
T PTZ00051         18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKEN-ITSMPTF-KVFKNGSVVDTL   87 (98)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCC-CceeeEE-EEEeCCeEEEEE
Confidence            345788999999        333332      6788999988888877766 6788888 688889766443

>PRK10329 glutaredoxin-like protein; Provisional

Probab=96.90  E-value=0.0025  Score=42.42  Aligned_cols=40  Identities=15%  Similarity=0.280  Sum_probs=36.2

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLD  188 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d  188 (213)
                      +.|..+|++.+++..+.++. .++.++|+++++|+.++|++
T Consensus        26 I~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~   65 (81)
T PRK10329         26 FDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFR   65 (81)
T ss_pred             CceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence            89999999999888888875 58899999999999999987

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=96.87  E-value=0.0034  Score=46.22  Aligned_cols=40  Identities=15%  Similarity=0.269  Sum_probs=32.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI   58 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd   58 (213)
                      ..+..++.|+.++||+|+++.+.+.++...++  ++.+...+
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~   43 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVFKE   43 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEEe
Confidence            46788999999999999999999999887775  55555444

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>KOG0907|consensus

Probab=96.82  E-value=0.00052  Score=48.19  Aligned_cols=55  Identities=22%  Similarity=0.477  Sum_probs=41.5

Q ss_pred             hhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe----EeehH
Q psy15246        131 VREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE----LIGGL  187 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~----~~gg~  187 (213)
                      ....|.|||+|        |.+.++      +.|.++|+++..++++.+. ....||| +++.+|+    ++|+-
T Consensus        22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~-V~~~PTf-~f~k~g~~~~~~vGa~   94 (106)
T KOG0907|consen   22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFN-VKAMPTF-VFYKGGEEVDEVVGAN   94 (106)
T ss_pred             CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcC-ceEeeEE-EEEECCEEEEEEecCC
Confidence            34578899999        555444      8899999999777777776 6678999 7888886    55543

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=96.82  E-value=0.00053  Score=47.73  Aligned_cols=52  Identities=19%  Similarity=0.171  Sum_probs=36.0

Q ss_pred             hhhhheeccCC--------CCCCCC------CCceEEeccCCH---HHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        131 VREGLKIYSNW--------PTYPQV------VPYDTFDILQDQ---EVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~---~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ...+|.|||+|        |.+.++      +.|..+|+++++   ++.+.++ ..+.||+ .+|.+|+.+
T Consensus        16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~-V~~~Pt~-~~~~~G~~v   84 (103)
T cd02985          16 RLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREK-IIEVPHF-LFYKDGEKI   84 (103)
T ss_pred             CEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcC-CCcCCEE-EEEeCCeEE
Confidence            34788999999        444433      678999988875   3444443 5678887 677889754

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PRK10996 thioredoxin 2; Provisional

Probab=96.80  E-value=0.00036  Score=51.42  Aligned_cols=53  Identities=15%  Similarity=0.480  Sum_probs=39.7

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      +..++|.||++|        |.+.++       +.|..+|+..++++.+.++ ..++||+ .+|.+|+.+
T Consensus        52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~-V~~~Ptl-ii~~~G~~v  119 (139)
T PRK10996         52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFR-IRSIPTI-MIFKNGQVV  119 (139)
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcC-CCccCEE-EEEECCEEE
Confidence            344788999999        333333       6778899999998877776 6788888 678889844

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=96.77  E-value=0.00055  Score=48.60  Aligned_cols=52  Identities=13%  Similarity=0.123  Sum_probs=40.6

Q ss_pred             hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ..+|.||+||        |.++++      ++|.++|+...+++.+.+. ..+.||+ .+|.+|+.++
T Consensus        24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~-v~~vPt~-l~fk~G~~v~   89 (113)
T cd02989          24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLN-IKVLPTV-ILFKNGKTVD   89 (113)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCC-CccCCEE-EEEECCEEEE
Confidence            4788999999        333332      7899999999998887776 6788999 7888998554

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=96.76  E-value=0.00068  Score=46.40  Aligned_cols=56  Identities=18%  Similarity=0.475  Sum_probs=36.2

Q ss_pred             hhhhhhheeccCC--------CCCCCC---------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe----Eeeh
Q psy15246        129 QEVREGLKIYSNW--------PTYPQV---------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE----LIGG  186 (213)
Q Consensus       129 ~~~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~----~~gg  186 (213)
                      .....+|.||++|        |.++++         +.++.+|++.+.++++.+. +.++|++ .+|-+|+    +.|.
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-i~~~P~~-~~~~~~~~~~~~~g~   88 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFG-VSGFPTI-KFFPKGKKPVDYEGG   88 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCC-CCcCCEE-EEecCCCcceeecCC
Confidence            3445788999999        333222         5578889999888887765 5555655 3444455    6663

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=96.72  E-value=0.00036  Score=48.43  Aligned_cols=51  Identities=18%  Similarity=0.356  Sum_probs=34.9

Q ss_pred             hhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeE
Q psy15246        130 EVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTEL  183 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~  183 (213)
                      +...+|.|||+|        |.+.++        +.|..+|++ +++..+.+. ..+.||+ .+|-+|+.
T Consensus        17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~-v~~~Pt~-~~~~~g~~   83 (102)
T cd02948          17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYR-GKCEPTF-LFYKNGEL   83 (102)
T ss_pred             CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcC-CCcCcEE-EEEECCEE
Confidence            334788999999        333222        457888888 566655554 5678888 78888974

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.54  E-value=0.00064  Score=46.84  Aligned_cols=65  Identities=15%  Similarity=0.423  Sum_probs=41.4

Q ss_pred             cCCCcccccchhhhhhhheeccCC--------CCCCCC---------CCceEEeccC--CHHHHHHHHhhcCCCcccceE
Q psy15246        118 VPYDTFDILQDQEVREGLKIYSNW--------PTYPQV---------VPYDTFDILQ--DQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       118 ~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~--~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      ++..+|+.+.......+|.||++|        |.+.++         +.++.+|+..  ++.+++.+. +.++||+ .+|
T Consensus         5 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~-i~~~Pt~-~~~   82 (104)
T cd02997           5 LTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYN-VKGFPTF-KYF   82 (104)
T ss_pred             echHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCC-CccccEE-EEE
Confidence            344555533233335789999999        333222         4578889988  677777665 5677776 567


Q ss_pred             eCCeEe
Q psy15246        179 VNTELI  184 (213)
Q Consensus       179 i~g~~~  184 (213)
                      -+|+.+
T Consensus        83 ~~g~~~   88 (104)
T cd02997          83 ENGKFV   88 (104)
T ss_pred             eCCCee
Confidence            777744

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=96.52  E-value=0.0064  Score=52.87  Aligned_cols=61  Identities=16%  Similarity=0.226  Sum_probs=43.6

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH---Hh---------CCCccccEEEEEeCCCCcccc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS---LN---------YKVSAVPTFVILKNLKPVDRV   89 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~---~~---------~~I~~~Pti~~~~~g~~~~~~   89 (213)
                      ++.|..+|||+|++.+..+++.       ++.+-.+|++++++..   ++         .|.+++|++.+  +|+.   .
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~---i   71 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVH---I   71 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEE---E
Confidence            6779999999999999888874       5777788888766322   22         47789999855  5543   3


Q ss_pred             cCCCc
Q psy15246         90 EGADP   94 (213)
Q Consensus        90 ~g~~~   94 (213)
                      +|.+.
T Consensus        72 gGf~~   76 (410)
T PRK12759         72 GGYDN   76 (410)
T ss_pred             eCchH
Confidence            45543

>PRK10824 glutaredoxin-4; Provisional

Probab=96.46  E-value=0.0076  Score=42.89  Aligned_cols=50  Identities=10%  Similarity=-0.018  Sum_probs=33.1

Q ss_pred             CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH----HhCCCccccEEEEEeCCCCc
Q psy15246         28 DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS----LNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        28 ~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~----~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ||||+|++....|..+.       +.+..+|.+.++++.    +.-|-..+|.+  |-+|+.+
T Consensus        28 p~Cpyc~~ak~lL~~~~-------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI--FI~G~~I   81 (115)
T PRK10824         28 PSCGFSAQAVQALSACG-------ERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDGELV   81 (115)
T ss_pred             CCCchHHHHHHHHHHcC-------CCceEEEecCCHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence            69999999999888863       333445665555443    33466677775  5577655

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.44  E-value=0.089  Score=36.35  Aligned_cols=95  Identities=11%  Similarity=0.128  Sum_probs=62.7

Q ss_pred             ceEEeCCch-hhhhhc-CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          2 SVVQISEEL-DVEKYG-KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         2 ~v~~l~~~~-~~~~~~-~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      ++.+|++.. ....+. .+..++|-|+..--+   .....|.++|..+++ .+.|+...   +.++...+++. .|++++
T Consensus         1 ~v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~~~~~~~~~~~-~~~i~l   72 (102)
T cd03066           1 PVEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATF---DSKVAKKLGLK-MNEVDF   72 (102)
T ss_pred             CceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEEC---cHHHHHHcCCC-CCcEEE
Confidence            456777744 444456 677777777766444   355688999999975 67886533   45677888775 688999


Q ss_pred             EeC-CCCcccc-cCC-CchhHHHHHHHH
Q psy15246         80 LKN-LKPVDRV-EGA-DPESLDKKLQNQ  104 (213)
Q Consensus        80 ~~~-g~~~~~~-~g~-~~~~l~~~i~~~  104 (213)
                      +++ ......+ .|. +.+.|.+||...
T Consensus        73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          73 YEPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            975 3332334 554 444799998764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>KOG1752|consensus

Probab=96.35  E-value=0.019  Score=40.13  Aligned_cols=58  Identities=16%  Similarity=0.112  Sum_probs=39.1

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-h----HHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-K----LSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-~----l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      +|.|..+||+.|++++..|.+    +.. ...++.+|-+.+. +    +.+.-+-+.+|.+  |-+|+.+
T Consensus        16 VVifSKs~C~~c~~~k~ll~~----~~v-~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk~i   78 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSD----LGV-NPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGKFI   78 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHh----CCC-CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCEEE
Confidence            345999999999998888888    332 4566777766543 2    3333456788986  4477655

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=96.33  E-value=0.0006  Score=48.43  Aligned_cols=64  Identities=16%  Similarity=0.345  Sum_probs=39.2

Q ss_pred             ccCCCccc-ccchhhhhhhheeccCC--------CCCCCC----------CCceEEeccC--CHHHHHHHHhhcCCCccc
Q psy15246        117 HVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQ--DQEVREGLKIYSNWPTYP  175 (213)
Q Consensus       117 ~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~--~~~~~~~l~~~~~~pt~p  175 (213)
                      .++..+|+ .+.+....++|.||+||        |.|.++          +.++.+||..  +.++++.++ ..++||+ 
T Consensus         5 ~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~-i~~~Pt~-   82 (114)
T cd02992           5 VLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFG-VTGYPTL-   82 (114)
T ss_pred             ECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCC-CCCCCEE-
Confidence            34556666 33333345899999999        444333          5668889865  355666554 5566776 


Q ss_pred             ceEeCCe
Q psy15246        176 QVYVNTE  182 (213)
Q Consensus       176 ~i~i~g~  182 (213)
                      .+|-+|+
T Consensus        83 ~lf~~~~   89 (114)
T cd02992          83 RYFPPFS   89 (114)
T ss_pred             EEECCCC
Confidence            4555554

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=96.20  E-value=0.00099  Score=46.79  Aligned_cols=65  Identities=14%  Similarity=0.315  Sum_probs=39.4

Q ss_pred             cccCCCcccccc---hhhhhhhheeccCC--------CCCCCC--------CCceEEeccC-CHHHHHHHHhhcCCCccc
Q psy15246        116 THVPYDTFDILQ---DQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQ-DQEVREGLKIYSNWPTYP  175 (213)
Q Consensus       116 ~~~~~~~f~~l~---~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~-~~~~~~~l~~~~~~pt~p  175 (213)
                      ..++..+|+.+.   +....++|.||+||        |.|.++        +.++.+|++. +..++....+..++||+ 
T Consensus         4 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti-   82 (109)
T cd02993           4 VTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTI-   82 (109)
T ss_pred             eeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEE-
Confidence            344556666333   23456899999999        444333        4578899987 45555443335566776 


Q ss_pred             ceEeCC
Q psy15246        176 QVYVNT  181 (213)
Q Consensus       176 ~i~i~g  181 (213)
                      .+|.+|
T Consensus        83 ~~f~~~   88 (109)
T cd02993          83 LFFPKN   88 (109)
T ss_pred             EEEcCC
Confidence            455555

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.17  E-value=0.083  Score=36.69  Aligned_cols=93  Identities=17%  Similarity=0.243  Sum_probs=60.4

Q ss_pred             eEEeCCch-hhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEEL-DVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~-~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +.++++.. ....+...+.++|-|+..--.   .....|.++|..+++ ++.|+...   +.+++..+++  .|++++|+
T Consensus         2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~~~~~~~~~~--~~~ivl~~   72 (104)
T cd03069           2 SVELRTEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---DKQLLEKYGY--GEGVVLFR   72 (104)
T ss_pred             ccccCCHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---hHHHHHhcCC--CCceEEEe
Confidence            45666633 344466777778777766444   456788899999976 68886544   4577888988  68888883


Q ss_pred             C------C-CCcccccC-CCchhHHHHHHHH
Q psy15246         82 N------L-KPVDRVEG-ADPESLDKKLQNQ  104 (213)
Q Consensus        82 ~------g-~~~~~~~g-~~~~~l~~~i~~~  104 (213)
                      .      - .....+.| .+.++|.+||...
T Consensus        73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             chhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence            2      1 11122455 3444799998764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=96.16  E-value=0.0014  Score=44.66  Aligned_cols=52  Identities=15%  Similarity=0.378  Sum_probs=38.1

Q ss_pred             hhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        131 VREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ...+|.||++|        |.++++       +.+..+|+...+++.+.+. ..+.||+ .+|.+|+.+
T Consensus        15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~-i~~~Pt~-~~~~~g~~~   81 (97)
T cd02984          15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFE-ITAVPTF-VFFRNGTIV   81 (97)
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcC-CccccEE-EEEECCEEE
Confidence            44778899999        333322       6778889888888877776 6778887 677888743

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=96.15  E-value=0.0015  Score=57.38  Aligned_cols=66  Identities=18%  Similarity=0.360  Sum_probs=45.8

Q ss_pred             ccccCCCcccccc---hhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCH-HHH-HHHHhhcCCCc
Q psy15246        115 ITHVPYDTFDILQ---DQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQ-EVR-EGLKIYSNWPT  173 (213)
Q Consensus       115 ~~~~~~~~f~~l~---~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~-~~~-~~l~~~~~~pt  173 (213)
                      +..++.++|+.+.   +....++|.||+||        |.|+++        +.|+.+|++.++ +.. +.++ +.++||
T Consensus       353 Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~-I~~~PT  431 (463)
T TIGR00424       353 VVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQ-LGSFPT  431 (463)
T ss_pred             eEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcC-CCccce
Confidence            5667788888332   34555899999999        666555        457889999763 333 3444 678898


Q ss_pred             ccceEeCCe
Q psy15246        174 YPQVYVNTE  182 (213)
Q Consensus       174 ~p~i~i~g~  182 (213)
                      + .+|.+|.
T Consensus       432 i-i~Fk~g~  439 (463)
T TIGR00424       432 I-LFFPKHS  439 (463)
T ss_pred             E-EEEECCC
Confidence            8 7788774

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=96.14  E-value=0.0018  Score=44.86  Aligned_cols=50  Identities=14%  Similarity=0.313  Sum_probs=34.4

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEecc-CCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDIL-QDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~-~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      +...+|.|||||        |.++++      +.+..+|+. .++++++.++ ..++||+ .+|-+|
T Consensus        18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~-V~~~PT~-~lf~~g   82 (100)
T cd02999          18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYG-VVGFPTI-LLFNST   82 (100)
T ss_pred             CCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcC-CeecCEE-EEEcCC
Confidence            334789999999        444444      677888988 6777776665 5667777 455555

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.045  Score=41.05  Aligned_cols=58  Identities=17%  Similarity=0.261  Sum_probs=44.8

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCcc
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSA   73 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~   73 (213)
                      -.++.+|++|| ..++|-|-...-.|++...++...++.++.|..+                     .+.++++.|||..
T Consensus        28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~  107 (157)
T COG1225          28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG  107 (157)
T ss_pred             hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence            35678999999 7899999999999999888887556677767643                     4566788888754

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=96.11  E-value=0.0012  Score=45.30  Aligned_cols=63  Identities=21%  Similarity=0.438  Sum_probs=37.9

Q ss_pred             ccCCCccc-ccchhhhhhhheeccCC--------CCCCCC---------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246        117 HVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV---------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       117 ~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      .++.++|+ .+.+.....+|.||+||        |.+.++         +.++.+|++.+ +.+..+. ..++||+ .+|
T Consensus         4 ~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~-~~~~Pt~-~~~   80 (104)
T cd02995           4 VVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFV-VDGFPTI-LFF   80 (104)
T ss_pred             EEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhcc-CCCCCEE-EEE
Confidence            34566676 33444455788999999        444333         56688999886 3444333 3556666 455


Q ss_pred             eCCe
Q psy15246        179 VNTE  182 (213)
Q Consensus       179 i~g~  182 (213)
                      .+|+
T Consensus        81 ~~~~   84 (104)
T cd02995          81 PAGD   84 (104)
T ss_pred             cCCC
Confidence            5554

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=96.11  E-value=0.0033  Score=43.58  Aligned_cols=52  Identities=21%  Similarity=0.410  Sum_probs=33.3

Q ss_pred             CcccccchhhhhhhheeccCC--------CCCCCC----------CCceEEeccCCHHHHHHHHhhcCCCcc
Q psy15246        121 DTFDILQDQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQDQEVREGLKIYSNWPTY  174 (213)
Q Consensus       121 ~~f~~l~~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~~~~~~~~l~~~~~~pt~  174 (213)
                      ++|+.+.. ...++|.||++|        |.+.++          +.++.+|+...+++++.+. ..++||+
T Consensus         7 ~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-I~~~Pt~   76 (104)
T cd03000           7 DSFKDVRK-EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFG-VRGYPTI   76 (104)
T ss_pred             hhhhhhcc-CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcC-CccccEE
Confidence            34443333 335889999999        444333          4457789988887776555 5566666

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PTZ00062 glutaredoxin; Provisional

Probab=96.07  E-value=0.021  Score=44.91  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=35.4

Q ss_pred             cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHH----hCCCccccEEEEEeCCCCc
Q psy15246         27 ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL----NYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        27 a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~----~~~I~~~Pti~~~~~g~~~   86 (213)
                      +|+|+.|++....|++.       ++.+..+|++++.++.+    ..+-..+|.+.  -+|+.+
T Consensus       125 ~p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~~I  179 (204)
T PTZ00062        125 FPFCRFSNAVVNMLNSS-------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGELI  179 (204)
T ss_pred             CCCChhHHHHHHHHHHc-------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence            37999999999888864       46677788877665433    34666778764  467543

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=95.99  E-value=0.0022  Score=44.03  Aligned_cols=61  Identities=20%  Similarity=0.468  Sum_probs=38.8

Q ss_pred             CCCccc-ccchhhhhhhheeccCC--------CCCCCC---------CCceEEeccC-CHHHHHHHHhhcCCCcccceEe
Q psy15246        119 PYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV---------VPYDTFDILQ-DQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       119 ~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~-~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      +..+|+ .+.+.....+|.||++|        |.+..+         +.++.+|+.. ++++++.++ ..++|++ .+|.
T Consensus         6 ~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~-i~~~P~~-~~~~   83 (105)
T cd02998           6 TDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYG-VSGFPTL-KFFP   83 (105)
T ss_pred             chhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCC-CCCcCEE-EEEe
Confidence            444554 33333434788999999        333221         4578899999 888888876 5667766 4555


Q ss_pred             CC
Q psy15246        180 NT  181 (213)
Q Consensus       180 ~g  181 (213)
                      +|
T Consensus        84 ~~   85 (105)
T cd02998          84 KG   85 (105)
T ss_pred             CC
Confidence            55

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=95.98  E-value=0.0027  Score=44.97  Aligned_cols=52  Identities=10%  Similarity=0.010  Sum_probs=40.3

Q ss_pred             hhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        131 VREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ....|.|+++|        |.++++       +.|..+|+++.+++.+.+. +...||+ .+|-+|+++
T Consensus        15 klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~-I~amPtf-vffkngkh~   81 (114)
T cd02986          15 KVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD-ISYIPST-IFFFNGQHM   81 (114)
T ss_pred             CEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC-ceeCcEE-EEEECCcEE
Confidence            34678899999        444333       6689999999999988777 6668999 488889876

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=95.96  E-value=0.0073  Score=39.03  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             CCceEEeccCCHHHHHHHHhhc-CCCcccceEe-CCeEeehHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYS-NWPTYPQVYV-NTELIGGLD  188 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~-~~pt~p~i~i-~g~~~gg~d  188 (213)
                      +.|..+|+..+++....+..++ +..++|++++ +|+++....
T Consensus        25 ~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~   67 (77)
T TIGR02200        25 AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS   67 (77)
T ss_pred             CceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence            7888999999888888887776 7889999976 567665443

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>TIGR01068 thioredoxin thioredoxin

Probab=95.95  E-value=0.0041  Score=42.25  Aligned_cols=51  Identities=12%  Similarity=0.366  Sum_probs=33.3

Q ss_pred             hhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        132 REGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ..+|.||++|        |.+.++       +.|..+|++.++++++.+. +.++||+ .+|-+|+.+
T Consensus        16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~P~~-~~~~~g~~~   81 (101)
T TIGR01068        16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYG-IRSIPTL-LLFKNGKEV   81 (101)
T ss_pred             cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcC-CCcCCEE-EEEeCCcEe
Confidence            4677888988        222222       7889999999888776664 4455555 344567644

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>KOG4023|consensus

Probab=95.81  E-value=0.011  Score=40.38  Aligned_cols=62  Identities=23%  Similarity=0.340  Sum_probs=50.6

Q ss_pred             CCceEEeccCCHHHHHH--------HHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCCC
Q psy15246        148 VPYDTFDILQDQEVREG--------LKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSS  209 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~--------l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~~  209 (213)
                      +.|..+|++...+.+++        .+-..|.|.-||||-..+.-|++|...+..+++-|.++|.-.|-.
T Consensus        33 i~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~F~ea~E~ntl~eFL~lap~~  102 (108)
T KOG4023|consen   33 IGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYELFFEAVEQNTLQEFLGLAPPP  102 (108)
T ss_pred             CCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHHHHHHHHHHHHHHHHccCCCc
Confidence            67788888877665554        344568899999999999999999999999999999999877643

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=95.73  E-value=0.065  Score=34.69  Aligned_cols=58  Identities=14%  Similarity=0.113  Sum_probs=48.8

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      .+..|-+...+.+++....+.++.+++-+..+.+-.||..++++++..++|-.+||++
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv   60 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLV   60 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence            3455666666889998889999888765437999999999999999999999999975

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=95.72  E-value=0.0036  Score=48.02  Aligned_cols=51  Identities=20%  Similarity=0.264  Sum_probs=36.9

Q ss_pred             hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ..+|.||+||        |.+.++      ++|..+|+... ++...+. ....||+ .+|.+|+.++
T Consensus        85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~-v~~vPTl-llyk~G~~v~  149 (175)
T cd02987          85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFD-TDALPAL-LVYKGGELIG  149 (175)
T ss_pred             EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCC-CCCCCEE-EEEECCEEEE
Confidence            5788999999        333333      78899999875 5555544 5578888 7889998775

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PLN02309 5'-adenylylsulfate reductase

Probab=95.65  E-value=0.0021  Score=56.37  Aligned_cols=67  Identities=13%  Similarity=0.291  Sum_probs=45.3

Q ss_pred             ccccCCCcccccc---hhhhhhhheeccCC--------CCCCCC--------CCceEEecc-CCHHHHHHHHhhcCCCcc
Q psy15246        115 ITHVPYDTFDILQ---DQEVREGLKIYSNW--------PTYPQV--------VPYDTFDIL-QDQEVREGLKIYSNWPTY  174 (213)
Q Consensus       115 ~~~~~~~~f~~l~---~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~-~~~~~~~~l~~~~~~pt~  174 (213)
                      +..++..+|+.+.   +....++|.||+||        |.|.++        +.|+.+|++ .+.+++..-.++.++||+
T Consensus       347 Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTi  426 (457)
T PLN02309        347 VVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI  426 (457)
T ss_pred             cEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEE
Confidence            4556777776332   34455899999999        555444        678999999 666666532236778888


Q ss_pred             cceEeCCe
Q psy15246        175 PQVYVNTE  182 (213)
Q Consensus       175 p~i~i~g~  182 (213)
                       .+|.+|.
T Consensus       427 -l~f~~g~  433 (457)
T PLN02309        427 -LLFPKNS  433 (457)
T ss_pred             -EEEeCCC
Confidence             6777664

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=95.32  E-value=0.0062  Score=41.65  Aligned_cols=53  Identities=28%  Similarity=0.300  Sum_probs=36.4

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ....++.|+++|        |.+.++       +.+..+|+++++++.+.++ ..+.||+ .+|-+|+.+
T Consensus        13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~-v~~vPt~-~i~~~g~~v   80 (97)
T cd02949          13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAG-IMGTPTV-QFFKDKELV   80 (97)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCC-CeeccEE-EEEECCeEE
Confidence            334678888998        222221       5678999999888877666 5667777 566778755

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=95.23  E-value=0.027  Score=36.81  Aligned_cols=31  Identities=10%  Similarity=0.256  Sum_probs=23.1

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE  182 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~  182 (213)
                      +.+..+|+.++++..+.    .+.+++|+++++|+
T Consensus        32 ~~~~~vd~~~~~~~~~~----~~v~~vPt~~~~g~   62 (82)
T TIGR00411        32 VEVEYINVMENPQKAME----YGIMAVPAIVINGD   62 (82)
T ss_pred             eEEEEEeCccCHHHHHH----cCCccCCEEEECCE
Confidence            56788999888766543    35667888889986

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>KOG2640|consensus

Probab=95.20  E-value=0.0072  Score=49.74  Aligned_cols=89  Identities=19%  Similarity=0.272  Sum_probs=68.0

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe-CCCchhHHHhCCCccccEEEEEeCCCCcccccCCCc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI-AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP   94 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd-~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~   94 (213)
                      ++...+-+.||+.||+..+..+|.+.-....++  .++...++ ...-+++..+|++.+.|++++...--+..+....+-
T Consensus        74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~--~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l  151 (319)
T KOG2640|consen   74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS--SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDL  151 (319)
T ss_pred             ccCCcccccchhcccCcccccCcccchhhhhcc--ccccccHHHHhhcccchhccccccCCcceeeccccchhhcccccH
Confidence            346678889999999999999999998888887  45444443 334678899999999999998766555544444555


Q ss_pred             hhHHHHHHHHhc
Q psy15246         95 ESLDKKLQNQAS  106 (213)
Q Consensus        95 ~~l~~~i~~~~~  106 (213)
                      .+|+++..+.+.
T Consensus       152 ~sLv~fy~~i~~  163 (319)
T KOG2640|consen  152 ASLVNFYTEITP  163 (319)
T ss_pred             HHHHHHHHhhcc
Confidence            689999888864

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=95.19  E-value=0.0099  Score=43.91  Aligned_cols=50  Identities=12%  Similarity=0.076  Sum_probs=37.2

Q ss_pred             hhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe
Q psy15246        132 REGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE  182 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~  182 (213)
                      ..+|.|||+|        |.++++       +.|..+|+++.+++.+.+. +.+.||+-.+|-+|+
T Consensus        25 lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~-I~~~~t~~~ffk~g~   89 (142)
T PLN00410         25 LVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYE-LYDPCTVMFFFRNKH   89 (142)
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcC-ccCCCcEEEEEECCe
Confidence            3778999999        444443       6678999999999988877 445555546778887

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=94.95  E-value=0.48  Score=32.37  Aligned_cols=73  Identities=14%  Similarity=0.193  Sum_probs=48.0

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCC-cccccC-CCch
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKP-VDRVEG-ADPE   95 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~-~~~~~g-~~~~   95 (213)
                      +...++.|..+. ..|..+...++++++.-+  ++.+-..+..+           ..|++.+..+|+. --++.| +...
T Consensus        19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh   84 (94)
T cd02974          19 NPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH   84 (94)
T ss_pred             CCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence            344455565555 999999999999988766  67665433221           4799999887743 123444 4555


Q ss_pred             hHHHHHHHH
Q psy15246         96 SLDKKLQNQ  104 (213)
Q Consensus        96 ~l~~~i~~~  104 (213)
                      ++..+|...
T Consensus        85 Ef~Slilai   93 (94)
T cd02974          85 EFTSLVLAL   93 (94)
T ss_pred             hHHHHHHHh
Confidence            788877654

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=94.64  E-value=0.033  Score=36.51  Aligned_cols=49  Identities=16%  Similarity=0.369  Sum_probs=33.9

Q ss_pred             hhhheeccCC-CCCCCC-------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe
Q psy15246        132 REGLKIYSNW-PTYPQV-------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE  182 (213)
Q Consensus       132 ~~~v~~~apW-P~~~~~-------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~  182 (213)
                      ..+|.|+++| |.+.++             +.|..+|+..+.++.+.++ ..+.||+ .+|-+|+
T Consensus        12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~P~~-~~~~~g~   74 (93)
T cd02947          12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYG-VRSIPTF-LFFKNGK   74 (93)
T ss_pred             cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcC-cccccEE-EEEECCE
Confidence            3567788887 222111             7889999999888877776 5667776 4666787

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=94.62  E-value=0.026  Score=39.87  Aligned_cols=43  Identities=12%  Similarity=0.048  Sum_probs=27.1

Q ss_pred             hhheeccCC-CCCCCC-------------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        133 EGLKIYSNW-PTYPQV-------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       133 ~~v~~~apW-P~~~~~-------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ..|.|+++| |.+..+             +.|..+|+..++++.+.++ +   .++|++++
T Consensus        25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~-v---~~vPt~~i   81 (113)
T cd02975          25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYG-V---ERVPTTIF   81 (113)
T ss_pred             EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcC-C---CcCCEEEE
Confidence            345567888 444333             5788999998887765544 3   45555555

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>KOG0914|consensus

Probab=94.51  E-value=0.017  Score=45.39  Aligned_cols=57  Identities=14%  Similarity=0.364  Sum_probs=41.3

Q ss_pred             hhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhc---CCCcccceEeCCeEeehHH
Q psy15246        128 DQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYS---NWPTYPQVYVNTELIGGLD  188 (213)
Q Consensus       128 ~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~---~~pt~p~i~i~g~~~gg~d  188 (213)
                      |...-|+|.||+.|        |.|+.+        .+||++|+...+++.+..+ +|   +-...|++-+   |.+|-+
T Consensus       142 nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfr-is~s~~srQLPT~il---Fq~gkE  217 (265)
T KOG0914|consen  142 NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFR-ISLSPGSRQLPTYIL---FQKGKE  217 (265)
T ss_pred             CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhee-eccCcccccCCeEEE---Eccchh
Confidence            44456999999999        666666        8999999999988877776 33   3456666655   445544

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.093  Score=47.84  Aligned_cols=76  Identities=20%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             hhhhhhcCCCeEEEEEEcCCCHHHHhHHHH-H--HHHHHHcCCCcEEEEEEeCCCchhHHHhCC--------CccccEEE
Q psy15246         10 LDVEKYGKDKTAVVHFYADWSDECKHMNTL-F--DEMSKQSKYSQVVFARCIAEDLPKLSLNYK--------VSAVPTFV   78 (213)
Q Consensus        10 ~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~-~--~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~--------I~~~Pti~   78 (213)
                      .+...-..++|++|-...+||.-|+-|... |  .++|+.+.. +++-++||-++-|++-+.|.        --+.|..+
T Consensus        35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtV  113 (667)
T COG1331          35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTV  113 (667)
T ss_pred             HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhccCHHHHHHHHHHHhccCCCCceeE
Confidence            344455789999999999999999998763 3  456666665 78889999999888776663        55899666


Q ss_pred             EE-eCCCCc
Q psy15246         79 IL-KNLKPV   86 (213)
Q Consensus        79 ~~-~~g~~~   86 (213)
                      |+ .+|+++
T Consensus       114 fLTPd~kPF  122 (667)
T COG1331         114 FLTPDGKPF  122 (667)
T ss_pred             EECCCCcee
Confidence            66 477765

>PRK09301 circadian clock protein KaiB; Provisional

Probab=94.46  E-value=0.19  Score=34.80  Aligned_cols=75  Identities=13%  Similarity=0.100  Sum_probs=56.9

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCC
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGAD   93 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~   93 (213)
                      ...++=.|.|..-+..++....+.++.+.+-...+.+-.||..++++++..++|-.+||++=.. -.+..+..|--
T Consensus         5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDl   79 (103)
T PRK09301          5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDL   79 (103)
T ss_pred             ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeeccc
Confidence            3456667888999999999999999877654326888899999999999999999999965332 23444555533

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=94.40  E-value=0.048  Score=39.76  Aligned_cols=38  Identities=16%  Similarity=0.225  Sum_probs=32.8

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL  187 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~  187 (213)
                      ++++.+|++++++++..++ ..++||+ .+|-||+.+|-.
T Consensus        70 v~~akVDiD~~~~LA~~fg-V~siPTL-l~FkdGk~v~~i  107 (132)
T PRK11509         70 WQVAIADLEQSEAIGDRFG-VFRFPAT-LVFTGGNYRGVL  107 (132)
T ss_pred             eEEEEEECCCCHHHHHHcC-CccCCEE-EEEECCEEEEEE
Confidence            5789999999999988888 7889999 799999977644

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=94.17  E-value=0.25  Score=33.17  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=53.9

Q ss_pred             eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCC
Q psy15246         20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA   92 (213)
Q Consensus        20 ~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~   92 (213)
                      .++=.|.|..-+.+++....+.++.+.+-...+.+--||..++++++..++|-++||++=... .+..+..|-
T Consensus         4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P-~P~rriiGd   75 (87)
T TIGR02654         4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILP-PPVRKIIGD   75 (87)
T ss_pred             EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCC-CCcceeecc
Confidence            344567788888999988899998776543268888999999999999999999999653322 334444453

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=94.04  E-value=0.13  Score=38.51  Aligned_cols=54  Identities=11%  Similarity=0.095  Sum_probs=39.0

Q ss_pred             CCeEEEEEEcCCCHHHHhH-HHHHHHHHHHcCCCcE-EEEEEeCCC---chhHHHhCCC
Q psy15246         18 DKTAVVHFYADWSDECKHM-NTLFDEMSKQSKYSQV-VFARCIAED---LPKLSLNYKV   71 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~-~~~~~~l~~~~~~~~v-~~~~vd~~~---~~~l~~~~~I   71 (213)
                      +..+++.|.+.||+.|... .+.|.+..+++...++ .++.|..+.   +.+.++++++
T Consensus        30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~   88 (155)
T cd03013          30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA   88 (155)
T ss_pred             CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence            3444555558999999998 9999999888874455 477777664   4456677776

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=94.03  E-value=0.21  Score=37.10  Aligned_cols=56  Identities=11%  Similarity=0.195  Sum_probs=38.6

Q ss_pred             EEEEEcC------CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCC----ccccEEEEEeCCCCc
Q psy15246         22 VVHFYAD------WSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKV----SAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~------wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I----~~~Pti~~~~~g~~~   86 (213)
                      +|.|+++      +|++|++.+..|+.+       +|.+-.+|++.+++.    .+..+-    ..+|.+.  -+|+.+
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~I   71 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRYL   71 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC-------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEEE
Confidence            4556666      999999999988875       477788888876544    344444    5778764  456533

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=93.68  E-value=0.08  Score=34.53  Aligned_cols=44  Identities=18%  Similarity=0.197  Sum_probs=25.7

Q ss_pred             heeccCC-CCCCCC------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeE
Q psy15246        135 LKIYSNW-PTYPQV------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTEL  183 (213)
Q Consensus       135 v~~~apW-P~~~~~------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~  183 (213)
                      |.||++| |.+..+            .++..++++..++    ..+| +..++|.+.+||+.
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~~~-~v~~vPti~i~G~~   59 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----ILEA-GVTATPGVAVDGEL   59 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HHHc-CCCcCCEEEECCEE
Confidence            5678888 333322            3444555553222    2223 67889999999953

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=93.64  E-value=0.024  Score=41.83  Aligned_cols=53  Identities=9%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCC--HHHHHHHHhhcCCCcccceE-eCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQD--QEVREGLKIYSNWPTYPQVY-VNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~--~~~~~~l~~~~~~pt~p~i~-i~g~~~  184 (213)
                      ....+|.||++|        |.+.++       +.|..+|++.+  .++...+. ..++||+ .+| -+|+.+
T Consensus        20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~-V~~iPt~-v~~~~~G~~v   90 (142)
T cd02950          20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYR-VDGIPHF-VFLDREGNEE   90 (142)
T ss_pred             CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcC-CCCCCEE-EEECCCCCEE
Confidence            445788999999        444333       56777887754  34443333 4566766 333 257643

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=93.53  E-value=0.084  Score=35.67  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=25.4

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      +++..+|+++.++..+++.    ...+|.+++||+.++
T Consensus        44 i~~~~vd~~~~~e~a~~~~----V~~vPt~vidG~~~~   77 (89)
T cd03026          44 IEHEMIDGALFQDEVEERG----IMSVPAIFLNGELFG   77 (89)
T ss_pred             ceEEEEEhHhCHHHHHHcC----CccCCEEEECCEEEE
Confidence            7888999888876665444    446778889998766

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG1731|consensus

Probab=93.46  E-value=0.011  Score=52.43  Aligned_cols=73  Identities=22%  Similarity=0.399  Sum_probs=49.7

Q ss_pred             ccccCCCccc-ccchhhhhhhheeccCC--------CCCCCC----------CCceEEeccCC--HHHHHHHHhhcCCCc
Q psy15246        115 ITHVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQD--QEVREGLKIYSNWPT  173 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~~--~~~~~~l~~~~~~pt  173 (213)
                      +..+..++|. .+-++..-++|.||+.|        |+|.++          +.++.|||...  ..+|.+.. ++++||
T Consensus        41 ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~-V~~~Pt  119 (606)
T KOG1731|consen   41 IIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFS-VSGYPT  119 (606)
T ss_pred             eEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcC-CCCCce
Confidence            4556667776 33333345899999999        887766          78899999874  55676665 566776


Q ss_pred             c---cceEeC---CeEeehHH
Q psy15246        174 Y---PQVYVN---TELIGGLD  188 (213)
Q Consensus       174 ~---p~i~i~---g~~~gg~d  188 (213)
                      +   |.-+-+   |+.+.|..
T Consensus       120 lryf~~~~~~~~~G~~~~~~~  140 (606)
T KOG1731|consen  120 LRYFPPDSQNKTDGSDVSGPV  140 (606)
T ss_pred             eeecCCccccCcCCCcccCCc
Confidence            5   333444   78888843

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=93.34  E-value=0.29  Score=31.59  Aligned_cols=73  Identities=8%  Similarity=0.062  Sum_probs=42.0

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe--CCCCcccccCCCchhHHH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK--NLKPVDRVEGADPESLDK   99 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~--~g~~~~~~~g~~~~~l~~   99 (213)
                      +..|+.+.|+.|++.+-.+.+..-.+     .+..+|.....++ +.-+...+|++..=.  +|..+     ..+..|.+
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~gi~y-----~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l-----~eS~~I~~   70 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYHGIPY-----EVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL-----VDSSVIIS   70 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCce-----EEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE-----EcHHHHHH
Confidence            34678899999999997777653322     2333333222333 335567899886432  12211     13346777


Q ss_pred             HHHHHh
Q psy15246        100 KLQNQA  105 (213)
Q Consensus       100 ~i~~~~  105 (213)
                      ++++.+
T Consensus        71 yL~~~~   76 (77)
T cd03040          71 TLKTYL   76 (77)
T ss_pred             HHHHHc
Confidence            777764

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=93.09  E-value=1.7  Score=30.29  Aligned_cols=94  Identities=14%  Similarity=0.167  Sum_probs=57.6

Q ss_pred             ceEEeCCchhh-hhhcCC-CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          2 SVVQISEELDV-EKYGKD-KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         2 ~v~~l~~~~~~-~~~~~~-~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      ++.++++.... ..+... ..++|-|+..--+   .....|.++|..+++ .+.|+...   +.++..++++. .|.+++
T Consensus         1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~---~~~~~~~~~~~-~~~vvl   72 (107)
T cd03068           1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTF---DSEIFKSLKVS-PGQLVV   72 (107)
T ss_pred             CceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEC---hHHHHHhcCCC-CCceEE
Confidence            45677774333 334555 6777767666433   456688899999976 78886544   35777888876 467777


Q ss_pred             EeCCCCc-------ccccCC--Cchh-HHHHHHH
Q psy15246         80 LKNLKPV-------DRVEGA--DPES-LDKKLQN  103 (213)
Q Consensus        80 ~~~g~~~-------~~~~g~--~~~~-l~~~i~~  103 (213)
                      |+.-...       ..+.|.  ...+ |.+||++
T Consensus        73 ~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          73 FQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             ECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence            7433211       112333  3334 8888865

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=92.85  E-value=0.27  Score=31.22  Aligned_cols=50  Identities=8%  Similarity=-0.031  Sum_probs=30.5

Q ss_pred             EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246         24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus        24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      .++.++|++|++.+-.+....-.+     ....++........+..+-..+|++.
T Consensus         3 Ly~~~~~p~~~rvr~~L~~~gl~~-----~~~~~~~~~~~~~~~~~~~~~vP~L~   52 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGLKNIPV-----EQIILQNDDEATPIRMIGAKQVPILE   52 (71)
T ss_pred             eEecCCCcHhHHHHHHHHHcCCCe-----EEEECCCCchHHHHHhcCCCccCEEE
Confidence            477899999999888777653322     23344443333333444456788874

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>PHA02125 thioredoxin-like protein

Probab=92.71  E-value=0.048  Score=35.45  Aligned_cols=45  Identities=20%  Similarity=0.333  Sum_probs=24.9

Q ss_pred             heeccCC--------CCCCCC-CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        135 LKIYSNW--------PTYPQV-VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       135 v~~~apW--------P~~~~~-v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      +.|++||        |.+.++ ..+..+|+..++++...++    ...+|++. +|+.+
T Consensus         3 v~f~a~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~~l~~~~~----v~~~PT~~-~g~~~   56 (75)
T PHA02125          3 YLFGAEWCANCKMVKPMLANVEYTYVDVDTDEGVELTAKHH----IRSLPTLV-NTSTL   56 (75)
T ss_pred             EEEECCCCHhHHHHHHHHHHHhheEEeeeCCCCHHHHHHcC----CceeCeEE-CCEEE
Confidence            5688888        333322 4456666666666655443    34555544 77643

>KOG0908|consensus

Probab=92.63  E-value=0.042  Score=44.04  Aligned_cols=50  Identities=14%  Similarity=0.282  Sum_probs=39.4

Q ss_pred             hhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        133 EGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       133 ~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      .+|+|+|.|        |.|..+      .-|.+||+++-.....+.. .+-.||| ..|.||+.|
T Consensus        24 v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~g-V~amPTF-iff~ng~ki   87 (288)
T KOG0908|consen   24 VVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNG-VNAMPTF-IFFRNGVKI   87 (288)
T ss_pred             EEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcC-cccCceE-EEEecCeEe
Confidence            678999999        888887      6689999988655655555 6678999 789999754

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=92.62  E-value=0.036  Score=43.15  Aligned_cols=66  Identities=12%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             ccccCCCccc-ccchh--hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccce
Q psy15246        115 ITHVPYDTFD-ILQDQ--EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQV  177 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~~--~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i  177 (213)
                      +..++...|. .+...  ....+|.||++|        |.+.++      ++|..+|+...   ...+ ...+.||+ .+
T Consensus        84 v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~-~i~~lPTl-li  158 (192)
T cd02988          84 VYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNY-PDKNLPTI-LV  158 (192)
T ss_pred             EEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhC-CCCCCCEE-EE
Confidence            3444555554 22222  234678999999        334333      67888887642   2222 24577888 78


Q ss_pred             EeCCeEee
Q psy15246        178 YVNTELIG  185 (213)
Q Consensus       178 ~i~g~~~g  185 (213)
                      |.+|+.++
T Consensus       159 yk~G~~v~  166 (192)
T cd02988         159 YRNGDIVK  166 (192)
T ss_pred             EECCEEEE
Confidence            89998554

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=92.46  E-value=0.88  Score=29.41  Aligned_cols=69  Identities=13%  Similarity=0.016  Sum_probs=39.8

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc----hhHHHhCCCccccEEEEEeCCCCcccccCCCchhHH
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL----PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLD   98 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~----~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~   98 (213)
                      ..++.++|+.|.+.+-.+++..       +.+-.+++...    .++.+...-..+|+++.-.+|..     -..+..|.
T Consensus         3 ~Ly~~~~sp~~~kv~~~L~~~g-------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~~I~   70 (77)
T cd03041           3 ELYEFEGSPFCRLVREVLTELE-------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESADIV   70 (77)
T ss_pred             eEecCCCCchHHHHHHHHHHcC-------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHHHHH
Confidence            4567789999999888777753       32333444332    34444445578998753222321     23444666


Q ss_pred             HHHHH
Q psy15246         99 KKLQN  103 (213)
Q Consensus        99 ~~i~~  103 (213)
                      +++.+
T Consensus        71 ~yL~~   75 (77)
T cd03041          71 KYLFK   75 (77)
T ss_pred             HHHHH
Confidence            66654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=92.45  E-value=0.47  Score=30.12  Aligned_cols=51  Identities=8%  Similarity=0.013  Sum_probs=35.0

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHHhCCCccccEEE
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSLNYKVSAVPTFV   78 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~~~~I~~~Pti~   78 (213)
                      +.|+.+||+.|.+.+-.+++..-.     +.+..+|... .+++.+......+|++.
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl~-----~e~~~v~~~~~~~~~~~~np~~~vP~L~   53 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGIT-----VELREVELKNKPAEMLAASPKGTVPVLV   53 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCCC-----cEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence            357889999999988777765333     3445555443 34566666777899985

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>PHA03075 glutaredoxin-like protein; Provisional

Probab=92.35  E-value=0.28  Score=34.61  Aligned_cols=36  Identities=14%  Similarity=0.300  Sum_probs=29.8

Q ss_pred             CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC
Q psy15246         19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA   59 (213)
Q Consensus        19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~   59 (213)
                      +.+++.|..|.|+-|+.....+.++..+|.     +.+||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~-----ilrVNI   37 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEYD-----ILRVNI   37 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhcccc-----EEEEEe
Confidence            567899999999999999999988777666     666664

>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria

Probab=92.13  E-value=0.11  Score=34.66  Aligned_cols=54  Identities=11%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             EEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246         25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus        25 F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      |-+..-+.+.+....++.+.+.+-+..+.+-.||..++++++..++|-.+||++
T Consensus         3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi   56 (82)
T PF07689_consen    3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI   56 (82)
T ss_dssp             EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred             EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence            555666777888888999888755447999999999999999999999999975

Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=92.08  E-value=0.051  Score=39.05  Aligned_cols=54  Identities=13%  Similarity=0.055  Sum_probs=32.8

Q ss_pred             hhheeccCC--------CCCCCC-----CCceEEeccCCH--------HHHHHHHhh------cCCCcccceEeCCeEee
Q psy15246        133 EGLKIYSNW--------PTYPQV-----VPYDTFDILQDQ--------EVREGLKIY------SNWPTYPQVYVNTELIG  185 (213)
Q Consensus       133 ~~v~~~apW--------P~~~~~-----v~~~~~d~~~~~--------~~~~~l~~~------~~~pt~p~i~i~g~~~g  185 (213)
                      .+|.|+++|        |.+.++     +++.++|++.+.        ++.+-..++      .+.||+ .+|.+|+.++
T Consensus        26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~-v~~k~Gk~v~  104 (122)
T TIGR01295        26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF-VHITDGKQVS  104 (122)
T ss_pred             EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE-EEEeCCeEEE
Confidence            577888999        333333     678999998643        222222222      236777 5778897655


Q ss_pred             hH
Q psy15246        186 GL  187 (213)
Q Consensus       186 g~  187 (213)
                      ..
T Consensus       105 ~~  106 (122)
T TIGR01295       105 VR  106 (122)
T ss_pred             EE
Confidence            43

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=92.05  E-value=0.05  Score=37.48  Aligned_cols=49  Identities=14%  Similarity=0.061  Sum_probs=26.8

Q ss_pred             hhhhheeccCC--------CCC---CCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        131 VREGLKIYSNW--------PTY---PQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~---~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ...+|.||++|        |.+   +++       +.+..+|+++++.....+.+.-+..++|++++
T Consensus        12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953          12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            34678899999        333   112       45677888775333233333334455555554

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=91.63  E-value=0.037  Score=37.12  Aligned_cols=42  Identities=19%  Similarity=0.400  Sum_probs=28.6

Q ss_pred             hhhheeccCC--------CCCC---------CCCCceEEeccCCHHHHHHHHhhcCCCcc
Q psy15246        132 REGLKIYSNW--------PTYP---------QVVPYDTFDILQDQEVREGLKIYSNWPTY  174 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~---------~~v~~~~~d~~~~~~~~~~l~~~~~~pt~  174 (213)
                      .++|.||++|        |.+.         ..+.|+.+|+..+..+++.+. ..+.||+
T Consensus        17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-i~~~Pt~   75 (101)
T cd02961          17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYG-VRGYPTI   75 (101)
T ss_pred             cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCC-CCCCCEE
Confidence            5788888988        2221         226778899998888877665 4555655

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=91.20  E-value=0.23  Score=34.44  Aligned_cols=32  Identities=3%  Similarity=-0.059  Sum_probs=23.9

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED   61 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~   61 (213)
                      ..|+.++|+.|++....+++.       ++.+-.+|..+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~   33 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLK   33 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc-------CCCcEEEeecc
Confidence            468999999999998877773       45555666544

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=90.99  E-value=0.32  Score=38.91  Aligned_cols=59  Identities=12%  Similarity=0.061  Sum_probs=47.1

Q ss_pred             ceEEeCCch---hhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC
Q psy15246          2 SVVQISEEL---DVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED   61 (213)
Q Consensus         2 ~v~~l~~~~---~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~   61 (213)
                      +|++++...   ..+..+.++|.||.|.+-.||+-..-...++++++++.+ .+.|..|-+.+
T Consensus        83 ~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~VYI~E  144 (237)
T PF00837_consen   83 PVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIVYIEE  144 (237)
T ss_pred             ceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehhhHhh
Confidence            467776644   233358899999999999999999999999999999996 56677776654

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=90.88  E-value=1.5  Score=28.04  Aligned_cols=69  Identities=13%  Similarity=0.120  Sum_probs=47.5

Q ss_pred             EEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHHH
Q psy15246         25 FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN  103 (213)
Q Consensus        25 F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~  103 (213)
                      ++.++|+.|++.+-.++...-     .+.+..++..+ ..++.+...-..+|++.  .+|..+.     .+..|.++|++
T Consensus         2 y~~~~Sp~~~kv~~~l~~~~i-----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~   69 (75)
T PF13417_consen    2 YGFPGSPYSQKVRLALEEKGI-----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEE   69 (75)
T ss_dssp             EEETTSHHHHHHHHHHHHHTE-----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHH
T ss_pred             CCcCCChHHHHHHHHHHHcCC-----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHH
Confidence            678999999998877766532     24455666554 45677777788999996  5565332     44578888877


Q ss_pred             Hh
Q psy15246        104 QA  105 (213)
Q Consensus       104 ~~  105 (213)
                      ..
T Consensus        70 ~~   71 (75)
T PF13417_consen   70 RY   71 (75)
T ss_dssp             HS
T ss_pred             Hc
Confidence            64

...

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=90.54  E-value=0.06  Score=38.54  Aligned_cols=56  Identities=14%  Similarity=0.206  Sum_probs=34.6

Q ss_pred             hhhhheecc-------CC--------CCCCCC-------CCceEEeccCC-------HHHHHHHHhhc-CCCcccceEeC
Q psy15246        131 VREGLKIYS-------NW--------PTYPQV-------VPYDTFDILQD-------QEVREGLKIYS-NWPTYPQVYVN  180 (213)
Q Consensus       131 ~~~~v~~~a-------pW--------P~~~~~-------v~~~~~d~~~~-------~~~~~~l~~~~-~~pt~p~i~i~  180 (213)
                      ...+|.|||       +|        |.++++       +.|..+|+...       .+++...+ +. +.||+ .+|-.
T Consensus        22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~-I~~~iPT~-~~~~~   99 (119)
T cd02952          22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK-LTTGVPTL-LRWKT   99 (119)
T ss_pred             CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC-cccCCCEE-EEEcC
Confidence            347889999       99        444333       67888998763       35554444 44 66777 45555


Q ss_pred             CeEeehHH
Q psy15246        181 TELIGGLD  188 (213)
Q Consensus       181 g~~~gg~d  188 (213)
                      |+.+-|.+
T Consensus       100 ~~~l~~~~  107 (119)
T cd02952         100 PQRLVEDE  107 (119)
T ss_pred             Cceecchh
Confidence            55555544

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=88.87  E-value=1.4  Score=27.72  Aligned_cols=52  Identities=8%  Similarity=0.116  Sum_probs=34.5

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----CchhHHHhCCCccccEEEE
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----DLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----~~~~l~~~~~I~~~Pti~~   79 (213)
                      ..|+.++|+.|++.+-.+....-.+.     ...++..    ..+++.+...-..+|++..
T Consensus         2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~-----~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~   57 (74)
T cd03051           2 KLYDSPTAPNPRRVRIFLAEKGIDVP-----LVTVDLAAGEQRSPEFLAKNPAGTVPVLEL   57 (74)
T ss_pred             EEEeCCCCcchHHHHHHHHHcCCCce-----EEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence            35778999999999988777643333     3444432    2345666666778999864

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=88.77  E-value=1  Score=27.45  Aligned_cols=51  Identities=10%  Similarity=0.023  Sum_probs=33.1

Q ss_pred             EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch--hHHHhCCCccccEEEE
Q psy15246         24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP--KLSLNYKVSAVPTFVI   79 (213)
Q Consensus        24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~--~l~~~~~I~~~Pti~~   79 (213)
                      .|+.++|+.|.+.+..++...-.     +....++.....  ++.+...-..+|++..
T Consensus         3 ly~~~~~~~~~~~~~~l~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~   55 (71)
T cd00570           3 LYYFPGSPRSLRVRLALEEKGLP-----YELVPVDLGEGEQEEFLALNPLGKVPVLED   55 (71)
T ss_pred             EEeCCCCccHHHHHHHHHHcCCC-----cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence            57889999999988877776333     334444443322  2455567778998754

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=88.01  E-value=0.89  Score=33.01  Aligned_cols=35  Identities=17%  Similarity=0.309  Sum_probs=25.2

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP   63 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~   63 (213)
                      +..|+.++|+.|++....+++.       ++.+-.+|..+++
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~~   36 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSSP   36 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCCh
Confidence            4568899999999988777663       4556666665543

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=87.47  E-value=0.78  Score=32.23  Aligned_cols=33  Identities=12%  Similarity=0.153  Sum_probs=24.6

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      ..|+.++|+.|++....+++.       ++.|-.+|..++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~   34 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIVEE   34 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc-------CCceEEecccCC
Confidence            468899999999988877773       456666666543

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=87.39  E-value=1  Score=31.94  Aligned_cols=34  Identities=6%  Similarity=0.034  Sum_probs=25.6

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP   63 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~   63 (213)
                      ..|+.++|+.|++....+++.       ++.+-.+|..+++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~   35 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEAN-------GIEYQFIDIGEDG   35 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc-------CCceEEEecCCCh
Confidence            358899999999998877772       4666677766543

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=86.39  E-value=1  Score=31.37  Aligned_cols=33  Identities=9%  Similarity=0.007  Sum_probs=23.7

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      ..|+.|+|+.|++....+++.       ++.+-.+|..++
T Consensus         2 ~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~   34 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKD   34 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccC
Confidence            468899999999988877763       355555565443

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>KOG2507|consensus

Probab=85.89  E-value=5.8  Score=34.49  Aligned_cols=90  Identities=16%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHH-HHHHH-HHHHcCCCcEEEEEEeCCC--chhHHHhCCCccccEEEEEe-CCCCccccc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMN-TLFDE-MSKQSKYSQVVFARCIAED--LPKLSLNYKVSAVPTFVILK-NLKPVDRVE   90 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~-~~~~~-l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~~~~-~g~~~~~~~   90 (213)
                      ...+.++|.|-+-......+|. -.|.. .....-...+..++|+...  ...++.-|-+..+|++.++. .|.++....
T Consensus        16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit   95 (506)
T KOG2507|consen   16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT   95 (506)
T ss_pred             hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence            4567777778887778888777 34433 3222221146666676543  45677788899999998885 899999999


Q ss_pred             CCCch-hHHHHHHHHh
Q psy15246         91 GADPE-SLDKKLQNQA  105 (213)
Q Consensus        91 g~~~~-~l~~~i~~~~  105 (213)
                      |.... +|...|.+..
T Consensus        96 g~v~adeL~~~i~Kv~  111 (506)
T KOG2507|consen   96 GFVTADELASSIEKVW  111 (506)
T ss_pred             ccccHHHHHHHHHHHH
Confidence            98775 6777777653

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=85.71  E-value=1.6  Score=26.57  Aligned_cols=45  Identities=13%  Similarity=0.112  Sum_probs=31.6

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKE  192 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~  192 (213)
                      ++|...++........++++.++..++|.+..+|+.+++...+.+
T Consensus        24 i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~   68 (71)
T cd00570          24 LPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILE   68 (71)
T ss_pred             CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHH
Confidence            566666665432221256667888999999999999998876654

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=85.60  E-value=2  Score=26.97  Aligned_cols=51  Identities=12%  Similarity=0.069  Sum_probs=33.0

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHHhCCCccccEEE
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSLNYKVSAVPTFV   78 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~~~~I~~~Pti~   78 (213)
                      ..|+.++|+.|++.+-.+++..-.+     ....+|... .+++.+......+|++.
T Consensus         2 ~ly~~~~~~~~~~v~~~l~~~gi~~-----~~~~v~~~~~~~~~~~~~p~~~vP~l~   53 (73)
T cd03059           2 TLYSGPDDVYSHRVRIVLAEKGVSV-----EIIDVDPDNPPEDLAELNPYGTVPTLV   53 (73)
T ss_pred             EEEECCCChhHHHHHHHHHHcCCcc-----EEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence            4578899999999888776654333     333455443 23555555667899774

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=84.94  E-value=2.4  Score=26.75  Aligned_cols=51  Identities=16%  Similarity=0.172  Sum_probs=34.3

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----chhHHHhCCCccccEEE
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----LPKLSLNYKVSAVPTFV   78 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----~~~l~~~~~I~~~Pti~   78 (213)
                      ..|+.++|+.|++.+-.+++..-.+.     ...+|..+    .+++.+......+|++.
T Consensus         2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e-----~~~i~~~~~~~~~~~~~~~~p~~~vP~l~   56 (74)
T cd03045           2 DLYYLPGSPPCRAVLLTAKALGLELN-----LKEVNLMKGEHLKPEFLKLNPQHTVPTLV   56 (74)
T ss_pred             EEEeCCCCCcHHHHHHHHHHcCCCCE-----EEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence            35889999999988877777544333     44455322    35666666667899985

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=84.77  E-value=2.4  Score=31.09  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=50.7

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc----cccEEEEEeCCCCcccccCCC
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS----AVPTFVILKNLKPVDRVEGAD   93 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~----~~Pti~~~~~g~~~~~~~g~~   93 (213)
                      ...-++.|++|.|+=|......++.     .  ++.+-.+..+.-..+-++++|.    +-=|.+  -+|+   +..|..
T Consensus        24 ~~~~~~vyksPnCGCC~~w~~~mk~-----~--Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V--I~Gy---~vEGHV   91 (149)
T COG3019          24 QATEMVVYKSPNCGCCDEWAQHMKA-----N--GFEVKVVETDDFLALKRRLGIPYEMQSCHTAV--INGY---YVEGHV   91 (149)
T ss_pred             ceeeEEEEeCCCCccHHHHHHHHHh-----C--CcEEEEeecCcHHHHHHhcCCChhhccccEEE--EcCE---EEeccC
Confidence            4456788999999999988777763     2  5667777777777788888875    222332  3564   345766


Q ss_pred             ch-hHHHHHHHH
Q psy15246         94 PE-SLDKKLQNQ  104 (213)
Q Consensus        94 ~~-~l~~~i~~~  104 (213)
                      +. +|..++.+.
T Consensus        92 Pa~aI~~ll~~~  103 (149)
T COG3019          92 PAEAIARLLAEK  103 (149)
T ss_pred             CHHHHHHHHhCC
Confidence            66 577766554

>KOG0913|consensus

Probab=84.58  E-value=0.27  Score=39.15  Aligned_cols=52  Identities=17%  Similarity=0.341  Sum_probs=35.5

Q ss_pred             hhheeccCC-CCC-------CCC--------CCceEEeccCCHHHHHHHHhhcCCCcccceE--eCCe---EeehHH
Q psy15246        133 EGLKIYSNW-PTY-------PQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY--VNTE---LIGGLD  188 (213)
Q Consensus       133 ~~v~~~apW-P~~-------~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~--i~g~---~~gg~d  188 (213)
                      |++.|++|| |++       .+.        +..+++|++.++-+.-.+-    ..-.|+||  .+|+   +.|-.|
T Consensus        42 wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~----vtaLptIYHvkDGeFrrysgaRd  114 (248)
T KOG0913|consen   42 WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFL----VTALPTIYHVKDGEFRRYSGARD  114 (248)
T ss_pred             HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeE----EEecceEEEeeccccccccCccc
Confidence            899999999 444       333        8889999999876643322    24457777  6675   455555

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=84.57  E-value=1.3  Score=33.73  Aligned_cols=34  Identities=6%  Similarity=0.136  Sum_probs=25.7

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEE
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFA   55 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~   55 (213)
                      |..|+..-||.|-...+.+.++.+.+++-.+.+.
T Consensus         2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~   35 (193)
T PF01323_consen    2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWR   35 (193)
T ss_dssp             EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence            6778889999999999999888888843234443

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=84.00  E-value=4  Score=33.10  Aligned_cols=58  Identities=10%  Similarity=0.082  Sum_probs=38.8

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCC-CccccEEEEEe
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYK-VSAVPTFVILK   81 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~-I~~~Pti~~~~   81 (213)
                      ...+|+.++...+.|||.|-..+=.+-.+-..|.  ++.+.....+.       .+ --.+||++|..
T Consensus        55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG--n~~l~~~~S~~-------~d~~pn~Ptl~F~~  113 (249)
T PF06053_consen   55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG--NFSLEYHYSDP-------YDNYPNTPTLIFNN  113 (249)
T ss_pred             CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC--CeeeEEeecCc-------ccCCCCCCeEEEec
Confidence            4678999999999999999987766666666666  44333222111       22 24788887764

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=83.22  E-value=3  Score=31.83  Aligned_cols=33  Identities=9%  Similarity=0.145  Sum_probs=25.3

Q ss_pred             EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE
Q psy15246         24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC   57 (213)
Q Consensus        24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v   57 (213)
                      +|..|.|+.|-.+.|.|.++..+++. .+.+-.|
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~~i   34 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFRFI   34 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEEEE
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEEEE
Confidence            58999999999999999999999997 5554444

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=82.94  E-value=7.7  Score=30.44  Aligned_cols=80  Identities=15%  Similarity=0.234  Sum_probs=50.5

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC------------------CchhHHHhCCCccccEEEEEeCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE------------------DLPKLSLNYKVSAVPTFVILKNL   83 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~------------------~~~~l~~~~~I~~~Pti~~~~~g   83 (213)
                      +=.|.+..|+.|-.....+.+++.. +  +|......+|                  .....+++++.+++-|=-++-||
T Consensus         2 VELFTSQGCsSCPpAD~~L~~l~~~-~--~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG   78 (202)
T PF06764_consen    2 VELFTSQGCSSCPPADRLLSELAAR-P--DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNG   78 (202)
T ss_dssp             EEEEE-TT-TT-HHHHHHHHHHHHH-T--SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETT
T ss_pred             eeEecCCCCCCCcHHHHHHHHhhcC-C--CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECC
Confidence            4579999999999999999999998 3  4444444433                  12345667777766555566688


Q ss_pred             CCcccccCCCchhHHHHHHHHhc
Q psy15246         84 KPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        84 ~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      +.  ...|.+..++...|.+...
T Consensus        79 ~~--~~~g~~~~~~~~ai~~~~~   99 (202)
T PF06764_consen   79 RE--HRVGSDRAAVEAAIQAARA   99 (202)
T ss_dssp             TE--EEETT-HHHHHHHHHHHHH
T ss_pred             ee--eeeccCHHHHHHHHHHhhc
Confidence            74  3567887788888888764

The function of this family is unknown.; PDB: 2AXO_A.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=82.87  E-value=3  Score=29.36  Aligned_cols=33  Identities=12%  Similarity=0.193  Sum_probs=24.0

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      ..|+.++|+.|++....+++.       ++.+-.+|..++
T Consensus         3 ~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~   35 (115)
T cd03032           3 KLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQ   35 (115)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCC
Confidence            467889999999988877773       455556665543

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PRK12559 transcriptional regulator Spx; Provisional

Probab=82.44  E-value=2.1  Score=31.09  Aligned_cols=33  Identities=15%  Similarity=0.276  Sum_probs=23.3

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED   61 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~   61 (213)
                      +..|+.++|+.|++....+++.       ++.+-.+|..+
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~-------gi~~~~~di~~   34 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEEN-------QIDYTEKNIVS   34 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------CCCeEEEEeeC
Confidence            4578899999999988777663       34455555543

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=81.90  E-value=0.35  Score=34.34  Aligned_cols=53  Identities=15%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHH-HHHHHHhhcC--CCcccceEe--CCeEee
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQE-VREGLKIYSN--WPTYPQVYV--NTELIG  185 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~-~~~~l~~~~~--~pt~p~i~i--~g~~~g  185 (213)
                      +...+|.|||+|        |.+.+.       .+|..+|++.+++ ..+.+. ..+  .||+  +|+  +|+.++
T Consensus        19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~-~~g~~vPt~--~f~~~~Gk~~~   91 (117)
T cd02959          19 GKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFS-PDGGYIPRI--LFLDPSGDVHP   91 (117)
T ss_pred             CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcc-cCCCccceE--EEECCCCCCch
Confidence            345788999999        444332       4678888887643 223333 333  5666  333  566544

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins

Probab=81.75  E-value=25  Score=28.59  Aligned_cols=57  Identities=18%  Similarity=0.237  Sum_probs=37.1

Q ss_pred             cCCCeEEEEEEcCC------CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHh----CCCcc
Q psy15246         16 GKDKTAVVHFYADW------SDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLN----YKVSA   73 (213)
Q Consensus        16 ~~~~~~vV~F~a~w------C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~----~~I~~   73 (213)
                      +-++++-|.+|.+-      -..=+.+...+++++..-++ ++.+-.+|.+.+++.+++    +||..
T Consensus        22 ~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g-~i~v~~iDp~~~~~~~~~~~~~~Gi~~   88 (271)
T PF09822_consen   22 SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPG-KIKVEFIDPDENPSEAEEKAKEYGIQP   88 (271)
T ss_pred             hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCC-ceEEEEECCCCChHHHHHHHHhcCCCc
Confidence            44556766666554      34444455555555555554 799999999877776665    88877

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=81.56  E-value=5.5  Score=26.42  Aligned_cols=53  Identities=8%  Similarity=0.025  Sum_probs=34.6

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-hhHHHhCCCccccEEEE
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-PKLSLNYKVSAVPTFVI   79 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-~~l~~~~~I~~~Pti~~   79 (213)
                      +..|+.+.|+.|++.+-.++...-.     +.+..++.... .++.+......+|++..
T Consensus        19 ~~Ly~~~~sp~~~kv~~~L~~~gl~-----~~~~~v~~~~~~~~~~~~np~~~vPvL~~   72 (89)
T cd03055          19 IRLYSMRFCPYAQRARLVLAAKNIP-----HEVININLKDKPDWFLEKNPQGKVPALEI   72 (89)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCC-----CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence            4456788899999988777665333     33455554433 34556566778999863

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=81.42  E-value=2.8  Score=27.27  Aligned_cols=56  Identities=11%  Similarity=0.159  Sum_probs=36.9

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--------------ch--hHHHhCCCccccEEEEEeCCCCc
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--------------LP--KLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--------------~~--~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      +.|+|.-||.|..+...++++.-.|       -.|++.+              .+  +=++..|--++|.++. .+|+.+
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~v~y-------d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV   76 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLNVDY-------DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV   76 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcCCCc-------eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence            6799999999999888888764333       3344332              11  2345677788998764 555543

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=81.29  E-value=2.7  Score=30.58  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.4

Q ss_pred             CchhHHHhCCCccccEEEEEeCCC
Q psy15246         61 DLPKLSLNYKVSAVPTFVILKNLK   84 (213)
Q Consensus        61 ~~~~l~~~~~I~~~Pti~~~~~g~   84 (213)
                      -+|.+.++|+|+.+|++++.+++.
T Consensus        59 IdP~lF~~f~I~~VPa~V~~~~~~   82 (130)
T TIGR02742        59 IDPQWFKQFDITAVPAFVVVKDGL   82 (130)
T ss_pred             EChHHHhhcCceEcCEEEEECCCC
Confidence            369999999999999999998774

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=80.88  E-value=4.5  Score=28.52  Aligned_cols=44  Identities=20%  Similarity=0.339  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHHHcCCC-cEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246         35 HMNTLFDEMSKQSKYS-QVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus        35 ~~~~~~~~l~~~~~~~-~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      .+.++...+.+..... ..    .+..-+|.+.++|+|+.+||+++-++
T Consensus        36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence            5555555555444321 11    23334699999999999999999887

The N-terminal portion of these proteins is heterogeneous.

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=80.61  E-value=3  Score=33.25  Aligned_cols=39  Identities=31%  Similarity=0.446  Sum_probs=29.2

Q ss_pred             hHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         64 KLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        64 ~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ..+++.||+++|||++  +|+  ....|..+. .+.+.|++.++
T Consensus       175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~  214 (225)
T COG2761         175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLA  214 (225)
T ss_pred             HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHh
Confidence            4678999999999998  333  224576666 58888888875

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=80.03  E-value=22  Score=26.67  Aligned_cols=44  Identities=11%  Similarity=-0.048  Sum_probs=32.5

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      -.++.++|.=.|+-|+.-.++. .++.|.+.|++.++.+...=|.
T Consensus        23 ~~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcN   66 (162)
T COG0386          23 YKGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCN   66 (162)
T ss_pred             hCCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEecccc
Confidence            4688999999999999877654 6777888887655666655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	213
2yan_A	105	Crystal Structure Of The Second Glutaredoxin Domain		2e-18
1wik_A	109	Solution Structure Of The Picot Homology 2 Domain O		6e-18
3zyw_A	111	Crystal Structure Of The First Glutaredoxin Domain		1e-15
2wz9_A	153	Crystal Structure Of The Thioredoxin Domain Of Huma		1e-15
2diy_A	130	The Solution Structure Of The Thioredoxin Domain Of		3e-15
3gx8_A	121	Structural And Biochemical Characterization Of Yeas		2e-10
2wul_A	118	Crystal Structure Of The Human Glutaredoxin 5 With		3e-10
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		8e-10
3ipz_A	109	Crystal Structure Of Arabidopsis Monothiol Glutared		8e-10
2lku_A	109	Solution Structure Of Reduced Poplar Apo Grxs14 Len		4e-09
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		1e-08
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		1e-08
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		1e-08
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		5e-08
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		6e-08
1yka_A	115	Solution Structure Of Grx4, A Monothiol Glutaredoxi		7e-08
2wci_A	135	Structure Of E. Coli Monothiol Glutaredoxin Grx4 Ho		8e-08
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		9e-08
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		9e-08
3d6i_A	112	Structure Of The Thioredoxin-Like Domain Of Yeast G		1e-07
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		1e-07
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		2e-07
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		2e-07
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		2e-07
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		2e-07
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		2e-07
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		5e-07
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		7e-07
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		7e-07
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		2e-06
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		2e-06
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		2e-06
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		3e-06
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		3e-06
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		4e-06
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		4e-06
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		4e-06
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		4e-06
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		5e-06
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		5e-06
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		5e-06
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		5e-06
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		6e-06
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		6e-06
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		6e-06
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		7e-06
2o7k_A	107	S. Aureus Thioredoxin Length = 107		8e-06
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		8e-06
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		8e-06
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		1e-05
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		1e-05
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		1e-05
3d21_A	139	Crystal Structure Of A Poplar Wild-Type Thioredoxin		1e-05
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		1e-05
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		2e-05
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		2e-05
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		3e-05
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		3e-05
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		3e-05
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		3e-05
1erw_A	105	Human Thioredoxin Double Mutant With Cys 32 Replace		3e-05
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		3e-05
2hxk_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		4e-05
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		4e-05
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		4e-05
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		6e-05
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		8e-05
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		1e-04
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		1e-04
1gh2_A	107	Crystal Structure Of The Catalytic Domain Of A New		1e-04
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		1e-04
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		2e-04
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		2e-04
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		2e-04
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		2e-04
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		2e-04
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		3e-04
3d22_A	139	Crystal Structure Of A Poplar Thioredoxin H Mutant,		4e-04
3qou_A	287	Crystal Structure Of E. Coli Ybbn Length = 287		6e-04
1r26_A	125	Crystal Structure Of Thioredoxin From Trypanosoma B		8e-04
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		9e-04

>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of Human Txnl2 Length = 105

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 48/56 (85%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
           V Y+TFDIL+D+EVR+GLK YSNWPTYPQ+YV  EL+GGLDI+KEL+   +L+P L
Sbjct: 47  VEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPIL 102

>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The Mouse Pkc-Interacting Cousin Of Thioredoxin Protein Length = 109

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 52/65 (80%), Gaps = 2/65 (3%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL--DQ 205
           V Y+TFDIL+D+EVR+GLK +SNWPTYPQ+YV  +L+GGLDI+KEL+   +L+P L  + 
Sbjct: 45  VEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKGES 104
Query: 206 PPSSD 210
            PSS 
Sbjct: 105 GPSSG 109

>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of Human Glutaredoxin 3 (Glrx3) Length = 111

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 44/52 (84%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
           + + +FDI  D+EVR+GLK YS+WPTYPQ+YV+ ELIGGLDIIKEL+ + +L
Sbjct: 46  IQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEEL 97

>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2 Length = 153

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+    QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 36  VVHFWAPWAPQCAQMNEVMAELAKE--LPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 93
Query: 82  NLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYD 121
           N + +DR++GA    L KK+Q  AS+    PS    V  D
Sbjct: 94  NSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKVDTD 133

>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Like Protein 2 Length = 130

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VVHF+A W+ +C  MN +  E++K+    QV F +  AE +P++S  Y++S+VPTF+  K
Sbjct: 42  VVHFWAPWAPQCAQMNEVMAELAKE--LPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 99
Query: 82  NLKPVDRVEGADPESLDKKLQNQAST 107
           N + +DR++GA    L KK+Q  AS+
Sbjct: 100 NSQKIDRLDGAHAPELTKKVQRHASS 125

>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast Monothiol Glutaredoxin Grx5 Length = 121

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 39/56 (69%)
Query: 150 YDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
           +  +++L+D E+REG+K +S WPT PQ+YVN E IGG D+I  +  + +L   L++
Sbjct: 51  FAAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEE 106

>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound Glutathione In An Fes Cluster Length = 118

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 150 YDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
           Y  +++L D E+R+G+K YSNWPT PQVY+N E +GG DI+ ++     L+  L
Sbjct: 53  YAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEEL 106

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 16  GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
           G DK  V+ F+A W   CK +  +F+++S      +V F +   ++  +++    + A+P
Sbjct: 31  GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMP 90
Query: 76  TFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           TFV  KN + +D V GADP  L   +   ++
Sbjct: 91  TFVFFKNGQKIDTVVGADPSKLQAAITQHSA 121

>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin Atgr Length = 109

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKE 192
           VP++  +IL+++ +R+GLK YSNWPT+PQ+Y+  E  GG DI  E
Sbjct: 48  VPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLE 92

>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14 Length = 109

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 38/52 (73%)
Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
            P+++ +IL+++ +R+GLK YS+WPT+PQ+Y++ E  GG DI  E   + +L
Sbjct: 48  APFESVNILENELLRQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGEL 99

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 16  GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
           G  K  VV F A W   CK +  +F E++K  K+  V F +   ++L  ++  + V A+P
Sbjct: 24  GSQKLIVVDFTASWCPPCKMIAPIFAELAK--KFPNVTFLKVDVDELKAVAEEWNVEAMP 81
Query: 76  TFVILKNLKPVDRVEGADPESLDKKLQNQAST 107
           TF+ LK+ K VD+  GAD + L   +   A+ 
Sbjct: 82  TFIFLKDGKLVDKTVGADKDGLPTLVAKHATA 113

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 16  GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
            +DK  VV FYA W   CK +  + ++ S+Q  Y Q  F +   ++L  ++   +VSA+P
Sbjct: 16  AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQ--YPQADFYKLDVDELGDVAQKNEVSAMP 73
Query: 76  TFVILKNLKPVDRVEGADPESLDKKLQNQA 105
           T ++ KN K V +V GA+P ++ + +   A
Sbjct: 74  TLLLFKNGKEVAKVVGANPAAIKQAIAANA 103

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 16  GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
            +DK  VV FYA W   CK +  + ++ S+Q  Y Q  F +   ++L  ++   +VSA+P
Sbjct: 22  AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQ--YPQADFYKLDVDELGDVAQKNEVSAMP 79
Query: 76  TFVILKNLKPVDRVEGADPESLDKKLQNQA 105
           T ++ KN K V +V GA+P ++ + +   A
Sbjct: 80  TLLLFKNGKEVAKVVGANPAAIKQAIAANA 109

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           V+ FYA W   CK M     ++ +   Y  V F +C  ++ P ++   +V+A+PTFV+ K
Sbjct: 34  VIDFYATWCGPCKMMQPHLTKLIQA--YPDVRFVKCDVDESPDIAKECEVTAMPTFVLGK 91
Query: 82  NLKPVDRVEGADPESLDKKLQN 103
           + + + ++ GA+P +L+K +++
Sbjct: 92  DGQLIGKIIGANPTALEKGIKD 113

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 1   MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
           MSV+++++E  + E    DK  +V F+A W   C+ +  + +E++K+ +    V    + 
Sbjct: 1   MSVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVD 60
Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKL 101
           E+ P  +  Y + ++PT ++ KN + VDR+ GA P     E +DK L
Sbjct: 61  EN-PNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106

>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From E. Coli Length = 115

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 154 DILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193
           DILQ+ ++R  L  Y+NWPT+PQ++V+ EL+GG DI+ E+
Sbjct: 51  DILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90

>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer Length = 135

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 150 YDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKEL 193
           +   DILQ+ ++R  L  Y+NWPT+PQ++V+ EL+GG DI+ E+
Sbjct: 67  FAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 110

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 13  EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS 72
           E  G+    +V F+A+W   C+ +  + +E++K+ +  +++ A+   ++ PK +  Y+V 
Sbjct: 14  ETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYE-GKLLVAKLDVDENPKTAXRYRVX 72
Query: 73  AVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSN 114
           ++PT ++ K+ +PV+ + GA P     K   QA   K+ P+ 
Sbjct: 73  SIPTVILFKDGQPVEVLVGAQP-----KRNYQAKIEKHLPAT 109

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 13  EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS 72
           E  G+    +V F+A+W   C+ +  + +E++K+ +  +++ A+   ++ PK +  Y+V 
Sbjct: 13  ETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYE-GKLLVAKLDVDENPKTAXRYRVX 71
Query: 73  AVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSN 114
           ++PT ++ K+ +PV+ + GA P     K   QA   K+ P+ 
Sbjct: 72  SIPTVILFKDGQPVEVLVGAQP-----KRNYQAKIEKHLPAT 108

>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast Glutaredoxin 3 Length = 112

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
            DK  V++F+  W++ CK +  +F+ +S +   S V F    A++  ++S  +++SAVP
Sbjct: 19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVP 78
Query: 76 TFVILKNLKPVDRVEGADPE 95
           F+I+     +  + GADP+
Sbjct: 79 YFIIIHKGTILKELSGADPK 98

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 19  KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
           + AVV F+A+W   C  +  + +E+++   Y QV F +  +++ P ++  Y V ++PT +
Sbjct: 17  EIAVVDFWAEWCAPCLILAPIIEELAED--YPQVGFGKLNSDENPDIAARYGVMSLPTVI 74
Query: 79  ILKNLKPVDRVEGADP-ESLDKKLQN 103
             K+ +PVD + GA P E ++ +++N
Sbjct: 75  FFKDGEPVDEIIGAVPREEIEIRIKN 100

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
           K+K  VV F+A W   CK +  LF E+S+  KY   +F +   + L + +  Y +SA+PT
Sbjct: 32  KNKLVVVDFFATWCGPCKTIAPLFKELSE--KY-DAIFVKVDVDKLEETARKYNISAMPT 88
Query: 77  FVILKNLKPVDRVEGA 92
           F+ +KN + V  V GA
Sbjct: 89  FIAIKNGEKVGDVVGA 104

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 7   SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
           + E D      DK  VV F+A W   CK +  + ++ ++Q  YS   F +   +++  ++
Sbjct: 15  ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQ--YSDAAFYKLDVDEVSDVA 72
Query: 67  LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
              +VS++PT +  K  K V RV GA+P ++ + + +
Sbjct: 73  QKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIAS 109

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 7   SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
           + E D      DK  VV F+A W   CK +  + ++ ++Q  YS   F +   +++  ++
Sbjct: 8   ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQ--YSDAAFYKLDVDEVSDVA 65
Query: 67  LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
              +VS++PT +  K  K V RV GA+P ++ + + +
Sbjct: 66  QKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIAS 102

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
          K+K  VV F+A W   CK +  LF E+S+  KY   +F +   + L + +  Y +SA+PT
Sbjct: 23 KNKLVVVDFFATWCGPCKTIAPLFKELSE--KY-DAIFVKVDVDKLEETARKYNISAMPT 79
Query: 77 FVILKNLKPVDRVEGA 92
          F+ +KN + V  V GA
Sbjct: 80 FIAIKNGEKVGDVVGA 95

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 16  GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
            +DK  VV FYA W    K +  + ++ S+Q  Y Q  F +   ++L  ++   +VSA+P
Sbjct: 22  AQDKLVVVDFYATWCGPSKMIAPMIEKFSEQ--YPQADFYKLDVDELGDVAQKNEVSAMP 79
Query: 76  TFVILKNLKPVDRVEGADPESLDKKLQNQA 105
           T ++ KN K V +V GA+P ++ + +   A
Sbjct: 80  TLLLFKNGKEVAKVVGANPAAIKQAIAANA 109

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
           K+K  VV F+A+W   C  +  + +E++  + Y QV F +   E+   +++ Y + ++PT
Sbjct: 22  KNKIVVVDFWAEWCAPCLILAPVIEELA--NDYPQVAFGKLNTEESQDIAMRYGIMSLPT 79
Query: 77  FVILKNLKPVDRVEGADP-ESLDKKLQN 103
            +  KN + VD++ GA P E ++ +L++
Sbjct: 80  IMFFKNGELVDQILGAVPREEIEVRLKS 107

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 19  KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
           K  V+ F A W   C+ M  +F +++K  K+   VF +   ++L  ++  + V A+PTF+
Sbjct: 35  KLVVIDFTASWCGPCRIMAPVFADLAK--KFPNAVFLKVDVDELKPIAEQFSVEAMPTFL 92
Query: 79  ILKNLKPVDRVEGADPESLDKKLQNQAST 107
            +K     DRV GA  E L  K+   A+ 
Sbjct: 93  FMKEGDVKDRVVGAIKEELTAKVGLHAAA 121

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 16  GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP 75
            +++  +V F+A+W   CK +   ++E SK   Y+++VF +   +++ +++    ++++P
Sbjct: 24  SQNELVIVDFFAEWCGPCKRIAPFYEECSKT--YTKMVFIKVDVDEVSEVTEKENITSMP 81
Query: 76  TFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           TF + KN   VD + GA+  +L + ++  A+
Sbjct: 82  TFKVYKNGSSVDTLLGANDSALKQLIEKYAA 112

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 6  ISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
          ++   D+EK     K +  VV F+A W   C+++    + ++K+    +V FA+   +  
Sbjct: 4  LATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKE--IPEVEFAKVDVDQN 61
Query: 63 PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESL 97
           + +  Y V+A+PTFV +K+ K VDR  GA+   L
Sbjct: 62 EEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKL 96

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 14  KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
           KY  DK A+V FYADW   CK +  + DE++K+    Q+V  +   E   +L+  + + +
Sbjct: 34  KYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYD-GQIVIYKVDTEKEQELAGAFGIRS 92
Query: 74  VPTFVILKNLKPVDRVEGADPESLDKK 100
           +P+ + +      +  +GA P++  KK
Sbjct: 93  IPSILFIPMEGKPEMAQGAMPKASFKK 119

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W   CK +   F  +S+  KYS V+F     +D   ++   +V A PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDAQDVASEAEVKATPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 7   SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
           + E D      DK  VV F+A W    K +  + ++ ++Q  YS   F +   +++  ++
Sbjct: 16  ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQ--YSDAAFYKLDVDEVSDVA 73
Query: 67  LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
              +VS++PT +  K  K V RV GA+P ++ + + +
Sbjct: 74  QKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIAS 110

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           VV F+A W   CK +    ++M  + ++ +VV A+   +D   L++ Y+VSAVPT + +K
Sbjct: 35  VVDFHAQWCGPCKILGPRLEKMVAK-QHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 82  NLKPVDRVEGADPE 95
           N   VD+  G   E
Sbjct: 94  NGDVVDKFVGIKDE 107

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 7   SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS 66
           + E D      DK  VV F+A W    K +  + ++ ++Q  YS   F +   +++  ++
Sbjct: 8   ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQ--YSDAAFYKLDVDEVSDVA 65
Query: 67  LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
              +VS++PT +  K  K V RV GA+P ++ + + +
Sbjct: 66  QKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIAS 102

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W   CK +   F  +S+  KYS V+F     +D   ++   +V ++PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASESEVKSMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W   CK +   F  +S+  KYS V+F     +D   ++   +V ++PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKSMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 3  VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
          V Q+ ++ D  K      +K  V+ FYA W   CK +    +E+S+    S VVF +   
Sbjct: 2  VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQS--MSDVVFLKVDV 59
Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESL 97
          ++   ++ + +++ +PTF+ +KN + +D + GA+ + L
Sbjct: 60 DECEDIAQDNQIACMPTFLFMKNGQKLDSLSGANYDKL 97

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W   CK +   F  +S+  KYS V+F     +D   ++   +V  +PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASEXEVKCMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 12  VEKYGKDKT-AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYK 70
           ++K  + KT  VV F A W   C+ +   F +++K  K   V+F +   ++L  ++ ++ 
Sbjct: 31  LQKANESKTLVVVDFTASWCGPCRFIAPFFADLAK--KLPNVLFLKVDTDELKSVASDWA 88
Query: 71  VSAVPTFVILKNLKPVDRVEGADPESL 97
           + A+PTF+ LK  K +D+V GA  + L
Sbjct: 89  IQAMPTFMFLKEGKILDKVVGAKKDEL 115

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W   CK +   F  +S+  KYS V+F     +D   ++   +V  +PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 16  GKD--KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
           GKD  K  ++ F A W   C+ +  +F E +K  K+   +F +   ++L  ++  Y V A
Sbjct: 24  GKDTGKLVIIDFTASWCGPCRVIAPVFAEYAK--KFPGAIFLKVDVDELKDVAEAYNVEA 81
Query: 74  VPTFVILKNLKPVDRVEGADPESLDKK---LQNQAST 107
           +PTF+ +K+ + VD V G   + +  K   L   AST
Sbjct: 82  MPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGSAST 118

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 19  KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
           K  ++ F A W   C+ +  +F E +K  K+   VF +   ++L +++  Y V A+PTF+
Sbjct: 37  KVVIIDFTASWCGPCRFIAPVFAEYAK--KFPGAVFLKVDVDELKEVAEKYNVEAMPTFL 94
Query: 79  ILKNLKPVDRVEGADPESL 97
            +K+    D+V GA  + L
Sbjct: 95  FIKDGAEADKVVGARKDDL 113

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
           M++V++++  D +   +    +V F+A W   CK +  + +E++   +    +    + E
Sbjct: 4   MAIVKVTDA-DFDSKVESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDE 62
Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKL 101
           + P  +  Y+V ++PT ++ K+ +PVD+V G  P     E LDK L
Sbjct: 63  N-PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W   CK +   F  +S+  KYS V+F     +D   ++   +V   PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKCTPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W   CK +   F  +S+  KYS V+F      D   ++   +V  +PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVNDCQDVASECEVKCMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
           M++V++++  D +   +    +V F+A W   CK +  + +E++   +    +    + E
Sbjct: 4   MAIVKVTDA-DFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDE 62
Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKL 101
           + P  +  Y+V ++PT ++ K+ +PVD+V G  P     E LDK L
Sbjct: 63  N-PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           +K  +V F+A W   CK +  + +E++ + + + +  A+   +  P+ + N++V ++PT 
Sbjct: 30  NKPVLVDFWATWCGPCKMVAPVLEEIATE-RATDLTVAKLDVDTNPETARNFQVVSIPTL 88
Query: 78  VILKNLKPVDRVEGA 92
           ++ K+ +PV R+ GA
Sbjct: 89  ILFKDGQPVKRIVGA 103

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          +K  +V F+A W   CK +  + +E++ + + + +  A+   +  P+ + N++V ++PT 
Sbjct: 25 NKPVLVDFWATWCGPCKMVAPVLEEIATE-RATDLTVAKLDVDTNPETARNFQVVSIPTL 83
Query: 78 VILKNLKPVDRVEGA 92
          ++ K+ +PV R+ GA
Sbjct: 84 ILFKDGQPVKRIVGA 98

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
          K  V+ F+A W   CK ++    E+S Q     VV  +   ++   +++ Y +S++PTFV
Sbjct: 21 KLVVLDFFATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDECEDIAMEYNISSMPTFV 79
Query: 79 ILKNLKPVDRVEGADPESLD 98
           LKN   V+   GA+ + L+
Sbjct: 80 FLKNGVKVEEFAGANAKRLE 99

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           DK  +V F+A W   C+ M  + +E + ++   +V  A+   ++ P+ +  + + ++PT 
Sbjct: 17  DKPVLVDFWAAWCGPCRMMAPVLEEFA-EAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 78  VILKNLKPVDRVEGADP-ESLDKKLQN 103
           ++ K  +PV ++ G  P E L+ +L +
Sbjct: 76  ILFKGGRPVKQLIGYQPKEQLEAQLAD 102

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 19  KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
           K  V+ F A W    + M  +F +++K  K+   VF +   ++L  ++  + V A+PTF+
Sbjct: 38  KLVVIDFTASWCGPSRIMAPVFADLAK--KFPNAVFLKVDVDELKPIAEQFSVEAMPTFL 95
Query: 79  ILKNLKPVDRVEGADPESLDKKLQNQAST 107
            +K     DRV GA  E L  K+   A+ 
Sbjct: 96  FMKEGDVKDRVVGAIKEELTAKVGLHAAA 124

>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 19  KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
           K  + +F A W   CK +   + E+S+   Y  ++F     ++L   S ++++ A PTF 
Sbjct: 47  KIVLANFSARWCGPCKQIAPYYIELSEN--YPSLMFLVIDVDELSDFSASWEIKATPTFF 104
Query: 79  ILKNLKPVDRVEGADPESLDKKL 101
            L++ + VD++ GA+   L KK+
Sbjct: 105 FLRDGQQVDKLVGANKPELHKKI 127

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 19  KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
           K  V+ F+A W   CK ++    E+S Q     VV  +   ++   +++ Y +S++PTFV
Sbjct: 26  KLVVLDFFATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDECEDIAMEYNISSMPTFV 84
Query: 79  ILKNLKPVDRVEGADPESLD 98
            LKN   V+   GA+ + L+
Sbjct: 85  FLKNGVKVEEFAGANAKRLE 104

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           DK  +V F+A W   C+ M  + +E + ++   +V  A+   ++ P+ +  + + ++PT 
Sbjct: 17  DKPVLVDFWAAWCGPCRMMAPVLEEFA-EAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 78  VILKNLKPVDRVEGADP-ESLDKKLQN 103
           ++ K  +PV ++ G  P E L+ +L +
Sbjct: 76  ILFKGGEPVKQLIGYQPKEQLEAQLAD 102

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           +V F+A W   CK +  + +E++   +    +    + E+ P  +  Y+V ++PT ++ K
Sbjct: 23  LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDEN-PSTAAKYEVMSIPTLIVFK 81
Query: 82  NLKPVDRVEGADP-----ESLDKKL 101
           + +PVD+V G  P     E LDK L
Sbjct: 82  DGQPVDKVVGFQPKENLAEVLDKHL 106

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 14  KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
           KY  DK A+V FYADW   CK +  + +E+SK+    ++   +   +  P+L+ ++ +  
Sbjct: 47  KYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA-GKIYIYKVNVDKEPELARDFGIQG 105
Query: 74  VPT--FVILKN 82
           +PT  FV +K 
Sbjct: 106 IPTIWFVPMKG 116

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
          +V F+A+W   CK +     E+ K+    +V  A+   +D P+    Y+V ++PT ++++
Sbjct: 24 LVDFWAEWCGPCKMIGPALGEIGKEFA-GKVTVAKVNIDDNPETPNAYQVRSIPTLMLVR 82
Query: 82 NLKPVDRVEGADPES 96
          + K +D+  GA P+S
Sbjct: 83 DGKVIDKKVGALPKS 97

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
           VV+  E+   ++       +V F+A W   C+ ++ + +E+++     ++   +   ++ 
Sbjct: 35  VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHA-GRLKVVKVNVDEH 93
Query: 63  PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-LDKKLQ 102
           P L+  Y V +VPT V+ +   PV    GA P   L+++L+
Sbjct: 94  PGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLR 134

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 14  KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
           KY  DK A+V FYADW   CK +  + +E+SK+    ++   +   +  P+L+ ++ + +
Sbjct: 47  KYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA-GKIYIYKVNVDKEPELARDFGIQS 105
Query: 74  VPT--FVILKN 82
           +PT  FV +K 
Sbjct: 106 IPTIWFVPMKG 116

>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A WS   K +   F  +S+  KYS V+F     +D   ++   +V  +PTF
Sbjct: 20 DKLVVVDFSATWSGPSKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W    K +   F  +S+  KYS V+F     +D   ++   +V A PTF
Sbjct: 20 DKLVVVDFSATWCGPAKMIKPFFHSLSE--KYSNVIFLEVDVDDAQDVASEAEVKATPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W   CK +   F  +S+  KYS V+F     +D   ++   +V  +PTF
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDXQDVASEXEVKCMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W   CK +   F  +S+  KYS V+F     +D   ++  Y +  +PT 
Sbjct: 20 DKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDVDDAQDVAPKYGIRGIPTL 77
Query: 78 VILKN 82
          ++ KN
Sbjct: 78 LLFKN 82

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           D   +V F+A W   C+ M  + +E + ++   +V  A+   ++ P+ +  + + ++PT 
Sbjct: 17  DGPVLVDFWAAWCGPCRMMAPVLEEFA-EAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 78  VILKNLKPVDRVEGADP-ESLDKKLQN 103
           ++ K  +PV ++ G  P E L+ +L +
Sbjct: 76  ILFKGGRPVKQLIGYQPKEQLEAQLAD 102

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           D   +V F+A W   C+ M  + +E + ++   +V  A+   ++ P+ +  + + ++PT 
Sbjct: 17  DGPVLVDFWAAWCGPCRMMAPVLEEFA-EAHADKVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 78  VILKNLKPVDRVEGADP-ESLDKKLQN 103
           ++ K  +PV ++ G  P E L+ +L +
Sbjct: 76  ILFKGGEPVKQLIGYQPKEQLEAQLAD 102

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           DK  VV F A W    K +   F  +S+  KYS V+F     +D   ++   +V ++PTF
Sbjct: 31  DKLVVVDFSATWCGPSKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKSMPTF 88
Query: 78  VILKNLKPVDRVEGADPESLD 98
              K  + V    GA+ E L+
Sbjct: 89  QFFKKGQKVGEFSGANKEKLE 109

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W    K +   F  +S+  KYS V+F     +D   ++   +V ++PTF
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLSE--KYSNVIFLEVDVDDSQDVASESEVKSMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
           M++V++++  D +   +    +V F+A W    K +  + +E++   +    +    + E
Sbjct: 4   MAIVKVTDA-DFDSKVESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDE 62
Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKL 101
           + P  +  Y+V ++PT ++ K+ +PVD+V G  P     E LDK L
Sbjct: 63  N-PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107

>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human Thioredoxin-Like Protein Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 19  KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
           + AVV F       C  +   F  MS  +KY Q VF           +    +SA PTF 
Sbjct: 22  RLAVVKFTMRGCGPCLRIAPAFSSMS--NKYPQAVFLEVDVHQCQGTAATNNISATPTFQ 79
Query: 79  ILKNLKPVDRVEGADPESLDKKLQ 102
             +N   +D+ +GAD   L++K++
Sbjct: 80  FFRNKVRIDQYQGADAVGLEEKIK 103

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           +K  +V F+A W    K +  + +E++ + + + +  A+   +  P+ + N++V ++PT 
Sbjct: 27  NKPVLVDFWATWCGPSKMVAPVLEEIATE-RATDLTVAKLDVDTNPETARNFQVVSIPTL 85
Query: 78  VILKNLKPVDRVEGA 92
           ++ K+ +PV R+ GA
Sbjct: 86  ILFKDGQPVKRIVGA 100

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          DK  VV F A W    K +   F  +S+  KYS V+F     +D   ++   +V  +PTF
Sbjct: 20 DKLVVVDFSATWCGPSKMIKPFFHSLSE--KYSNVIFLEVDVDDCQDVASECEVKRMPTF 77
Query: 78 VILKNLKPVDRVEGADPESLD 98
             K  + V    GA+ E L+
Sbjct: 78 QFFKKGQKVGEFSGANKEKLE 98

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
          +V F+A W   CK +  + DE++K+    ++   +   ++ P ++  Y + ++PT +  K
Sbjct: 21 MVDFWAPWCGPCKLIAPVIDELAKEYS-GKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79
Query: 82 NLKPVDRVEGADPES 96
          N +  + + GA P+S
Sbjct: 80 NGERKESIIGAVPKS 94

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
          +V F+A W   CK +  + DE++K+    ++   +   ++ P ++  Y + ++PT +  K
Sbjct: 22 MVDFWAPWCGPCKLIAPVIDELAKEYS-GKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 82 NLKPVDRVEGADPES 96
          N +  + + GA P+S
Sbjct: 81 NGERKESIIGAVPKS 95

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           +V F+A W   C+ M   F + +  +   QV  A+   +  P ++  +++  +P F++  
Sbjct: 68  LVDFWAPWCGPCRQMAPQF-QAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFH 126
Query: 82  NLKPVDRVEGADPES 96
             + + R  GA P S
Sbjct: 127 KGRELARAAGARPAS 141

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 21 AVVHFYADWSDECKHMNTLFDEMSKQSK-----YSQVVFARCIAEDLPKLSLNYKVSAVP 75
          A+V+FYADW    + ++ +F+E S   K      +QVVFAR   +    ++  Y++S  P
Sbjct: 25 ALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYP 84
Query: 76 TFVILKN 82
          T  + +N
Sbjct: 85 TLKLFRN 91

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
           M++V++++  D +   +    +V F+A     CK +  + +E++   +    +    + E
Sbjct: 3   MAIVKVTDA-DFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE 61
Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKL 101
           + P  +  Y+V ++PT ++ K+ +PVD+V G  P     E LDK L
Sbjct: 62  N-PSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 106

>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant, Pttrxh4c61s Length = 139

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 19  KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
           K  + +F A W    + +   + E+S+   Y  ++F     ++L   S ++++ A PTF 
Sbjct: 47  KIVLANFSARWCGPSRQIAPYYIELSEN--YPSLMFLVIDVDELSDFSASWEIKATPTFF 104
Query: 79  ILKNLKPVDRVEGADPESLDKKL 101
            L++ + VD++ GA+   L KK+
Sbjct: 105 FLRDGQQVDKLVGANKPELHKKI 127

>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR--CIAEDLPKLSLNYKVSAVPTFVI 79
           + +F+++ S  C  +  + + ++ Q    Q + A+  C AE +  ++  + + A+PT  +
Sbjct: 30  LFYFWSERSQHCLQLTPILESLAAQYN-GQFILAKLDCDAEQM--IAAQFGLRAIPTVYL 86
Query: 80  LKNLKPVDRVEGADPESLDKKL 101
            +N +PVD  +G  PE   + L
Sbjct: 87  FQNGQPVDGFQGPQPEEAIRAL 108

>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei Brucei Length = 125

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
           +D   V  F A W   CK +    ++++ +  +  V FA+  A++  ++    +V  +PT
Sbjct: 36  EDILTVAWFTAVWCGPCKTIERPMEKIAYE--FPTVKFAKVDADNNSEIVSKCRVLQLPT 93
Query: 77  FVILKNLKPVDRVEGADPESLDKKLQN 103
           F+I ++ K +  V GA+P  L +KL++
Sbjct: 94  FIIARSGKMLGHVIGANPGMLRQKLRD 120

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR--CIAEDLPKLSLNYKVSAVPTFVI 79
           + +F+++ S  C  +  + + ++ Q  + Q + A+  C AE    ++  + + A+PT  +
Sbjct: 30  LFYFWSERSQHCLQLTPVLESLAAQY-HGQFILAKLDCDAEQ--XIAAQFGLRAIPTVYL 86
Query: 80  LKNLKPVDRVEGADPESLDKKL 101
            +N +PVD  +G  PE   + L
Sbjct: 87  FQNGQPVDGFQGPQPEEAIRAL 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	213
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	7e-26
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	2e-25
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	3e-25
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	4e-25
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	6e-25
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	2e-24
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	4e-24
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	5e-24
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	4e-23
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	5e-23
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	2e-22
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	2e-22
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	2e-22
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	4e-22
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	4e-22
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	5e-22
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	2e-21
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	3e-21
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	6e-21
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	6e-21
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	3e-20
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	4e-20
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	6e-20
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	1e-19
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	3e-19
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	2e-18
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	6e-18
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	1e-17
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	1e-17
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	5e-17
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	6e-17
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	1e-16
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	6e-14
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	6e-14
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-13
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	3e-13
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	4e-13
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	2e-12
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	2e-11
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	1e-10
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	2e-10
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	8e-10
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	2e-09
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	2e-09
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	3e-09
2l57_A	126	Uncharacterized protein; structural genomics, unkn	3e-09
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	6e-09
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	6e-09
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	2e-08
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	9e-09
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	2e-08
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	2e-08
2kuc_A	130	Putative disulphide-isomerase; structural genomics	3e-08
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	5e-08
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	6e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	9e-07
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-05
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-05
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	7e-08
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	1e-07
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	1e-07
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	1e-07
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	2e-07
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	3e-07
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	5e-07
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	7e-07
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	8e-07
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	2e-06
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	2e-06
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	2e-06
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	2e-06
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	2e-06
1kte_A	105	Thioltransferase; redox-active center, electron tr	2e-06
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	3e-06
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	3e-06
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	3e-06
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	4e-06
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-04
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	4e-06
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	4e-06
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	4e-06
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	5e-06
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	6e-06
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	8e-06
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	9e-06
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	1e-05
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	1e-05
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-05
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	9e-05
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	2e-05
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	3e-05
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-05
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	7e-05
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	7e-05
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	8e-05
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	9e-05
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	1e-04
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	1e-04
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	1e-04
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	1e-04
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	2e-04
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	2e-04
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	2e-04
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	2e-04
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	2e-04
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	2e-04
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	2e-04
1mek_A	120	Protein disulfide isomerase; electron transport, r	3e-04
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	3e-04
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	3e-04
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	3e-04
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	4e-04
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	4e-04
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	5e-04
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	6e-04
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	7e-04

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Length = 109

 Score = 95.8 bits (239), Expect = 7e-26
 Identities = 36/58 (62%), Positives = 48/58 (82%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
           V Y+TFDIL+D+EVR+GLK +SNWPTYPQ+YV  +L+GGLDI+KEL+   +L+P L  
Sbjct: 45  VEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 95.7 bits (238), Expect = 2e-25
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 2   SVVQIS--EELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
           +V ++    + +   +       VVHF+A W+ +C  MN +  E++K  +  QV F +  
Sbjct: 13  AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAK--ELPQVSFVKLE 70

Query: 59  AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHV 118
           AE +P++S  Y++S+VPTF+  KN + +DR++GA    L KK+Q  AS+    PS    V
Sbjct: 71  AEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKV 130

Query: 119 PYDTFDILQDQ 129
             D      D+
Sbjct: 131 DTDPNSSSVDK 141

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} Length = 111

 Score = 93.9 bits (234), Expect = 3e-25
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
           + + +FDI  D+EVR+GLK YS+WPTYPQ+YV+ ELIGGLDIIKEL+ + +L     +
Sbjct: 46  IQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPK 103

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} Length = 105

 Score = 93.4 bits (233), Expect = 4e-25
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
           V Y+TFDIL+D+EVR+GLK YSNWPTYPQ+YV  EL+GGLDI+KEL+   +L+P L 
Sbjct: 47  VEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILR 103

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 93.1 bits (232), Expect = 6e-25
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 1   MSVVQIS--EELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
           + V  +    +   E      + AVV F       C  +   F  MS   KY Q VF   
Sbjct: 1   VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSN--KYPQAVFLEV 58

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
                   +    +SA PTF   +N   +D+ +GAD   L++K++
Sbjct: 59  DVHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIK 103

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} Length = 109

 Score = 91.9 bits (229), Expect = 2e-24
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPP 207
           VP++  +IL+++ +R+GLK YSNWPT+PQ+Y+  E  GG DI  E     +L   +++  
Sbjct: 48  VPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKAM 107

Query: 208 SS 209
            S
Sbjct: 108 CS 109

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 91.8 bits (228), Expect = 5e-24
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 2   SVVQIS--EELD---VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR 56
           +V  I+  E  D    E     K  + +F A W    + +   + E+S+   Y  ++F  
Sbjct: 25  NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSE--NYPSLMFLV 82

Query: 57  CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMK 109
              ++L   S ++++ A PTF  L++ + VD++ GA+   L KK+     ++ 
Sbjct: 83  IDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAILDSLP 135

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 88.6 bits (220), Expect = 4e-23
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 3   VVQIS--EELD---VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
           V+ +   E+      E     K  V+ F A W   C+ M  +F +++K  K+   VF + 
Sbjct: 14  VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAK--KFPNAVFLKV 71

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAST 107
             ++L  ++  + V A+PTF+ +K     DRV GA  E L  K+   A+ 
Sbjct: 72  DVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLHAAA 121

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 88.2 bits (219), Expect = 5e-23
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 1   MSVVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
            SV QI  +   ++      DK  VV F A W    K +   F  +S+  KYS V+F   
Sbjct: 11  GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSE--KYSNVIFLEV 68

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
             +D   ++   +V ++PTF   K  + V    GA+ E L+  + 
Sbjct: 69  DVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATIN 113

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae} Length = 121

 Score = 87.4 bits (217), Expect = 2e-22
 Identities = 24/57 (42%), Positives = 39/57 (68%)

Query: 149 PYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
            +  +++L+D E+REG+K +S WPT PQ+YVN E IGG D+I  +  + +L   L++
Sbjct: 50  KFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEE 106

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 86.6 bits (215), Expect = 2e-22
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
             K  VV F A W   CK +  +F E++K  K+  V F +   ++L  ++  + V A+PT
Sbjct: 25  SQKLIVVDFTASWCPPCKMIAPIFAELAK--KFPNVTFLKVDVDELKAVAEEWNVEAMPT 82

Query: 77  FVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           F+ LK+ K VD+  GAD + L   +   A+
Sbjct: 83  FIFLKDGKLVDKTVGADKDGLPTLVAKHAT 112

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 86.6 bits (215), Expect = 2e-22
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 3   VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
           V QI  +   ++      DK  VV F A W   CK +   F  +S+  KYS V+F     
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSE--KYSNVIFLEVDV 59

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
           +D   ++   +V ++PTF   K  + V    GA+ E L+  + 
Sbjct: 60  DDCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATIN 102

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 86.2 bits (214), Expect = 4e-22
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 2   SVVQIS--EELD---VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR 56
           +V+     +E D          K  ++ F A W   C+ +  +F E +K  K+   +F +
Sbjct: 7   AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAK--KFPGAIFLK 64

Query: 57  CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAST 107
              ++L  ++  Y V A+PTF+ +K+ + VD V G   + +  K+     +
Sbjct: 65  VDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGS 115

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A Length = 135

 Score = 86.7 bits (215), Expect = 4e-22
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ 205
             +   DILQ+ ++R  L  Y+NWPT+PQ++V+ EL+GG DI+ E+    +L   + +
Sbjct: 65  ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 122

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 85.5 bits (212), Expect = 5e-22
 Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 3   VVQISEELD----VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
           V++I+++            DK  V++F+  W++ CK +  +F+ +S +   S V F    
Sbjct: 2   VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61

Query: 59  AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           A++  ++S  +++SAVP F+I+     +  + GADP+     L++  +
Sbjct: 62  ADENSEISELFEISAVPYFIIIHKGTILKELSGADPKEYVSLLEDCKN 109

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 84.8 bits (210), Expect = 2e-21
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 1   MSVVQI-SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
            SVV + S E       +D   V  F A W   CK +    ++++   ++  V FA+  A
Sbjct: 19  PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAY--EFPTVKFAKVDA 76

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
           ++  ++    +V  +PTF+I ++ K +  V GA+P  L +KL+
Sbjct: 77  DNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLR 119

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 83.5 bits (207), Expect = 3e-21
 Identities = 26/104 (25%), Positives = 56/104 (53%), Gaps = 3/104 (2%)

Query: 1   MSVVQI-SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
            S+ ++ +         ++   V+ FYA W   CK M     ++ +   Y  V F +C  
Sbjct: 12  TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQ--AYPDVRFVKCDV 69

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
           ++ P ++   +V+A+PTFV+ K+ + + ++ GA+P +L+K +++
Sbjct: 70  DESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIKD 113

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 83.6 bits (207), Expect = 6e-21
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 3   VVQIS--EELD---VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
           V+     +E D    +     K  ++ F A W   C+ +  +F E +K  K+   VF + 
Sbjct: 16  VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK--KFPGAVFLKV 73

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPS 113
             ++L +++  Y V A+PTF+ +K+    D+V GA  + L   +           S
Sbjct: 74  DVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASAS 129

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 83.2 bits (206), Expect = 6e-21
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
                VV F A W   C+ +   F +++K  K   V+F +   ++L  ++ ++ + A+PT
Sbjct: 37  SKTLVVVDFTASWCGPCRFIAPFFADLAK--KLPNVLFLKVDTDELKSVASDWAIQAMPT 94

Query: 77  FVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           F+ LK  K +D+V GA  + L   +    +
Sbjct: 95  FMFLKEGKILDKVVGAKKDELQSTIAKHLA 124

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 81.1 bits (201), Expect = 3e-20
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 1   MSVVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
           M V+  + +L+      K +  VV F+A W   C+++    + ++K  +  +V FA+   
Sbjct: 1   MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAK--EIPEVEFAKVDV 58

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
           +   + +  Y V+A+PTFV +K+ K VDR  GA+   L + + 
Sbjct: 59  DQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRETIT 101

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 80.8 bits (200), Expect = 4e-20
 Identities = 25/106 (23%), Positives = 58/106 (54%), Gaps = 2/106 (1%)

Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
           M  +  S+        +++  +V F+A+W   CK +   ++E SK   Y+++VF +   +
Sbjct: 9   MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSK--TYTKMVFIKVDVD 66

Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           ++ +++    ++++PTF + KN   VD + GA+  +L + ++  A+
Sbjct: 67  EVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 112

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 80.5 bits (199), Expect = 6e-20
 Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 7/106 (6%)

Query: 1   MS-VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR 56
           MS ++++ ++ D+E      K+K  VV F+A W   CK +  LF E+S++      +F +
Sbjct: 12  MSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD---AIFVK 68

Query: 57  CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
              + L + +  Y +SA+PTF+ +KN + V  V GA    ++  ++
Sbjct: 69  VDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIK 114

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 79.3 bits (196), Expect = 1e-19
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
           M     +         +DK  VV FYA W   CK +  + ++ S+  +Y Q  F +   +
Sbjct: 7   MVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSE--QYPQADFYKLDVD 64

Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQA 105
           +L  ++   +VSA+PT ++ KN K V +V GA+P ++ + +   A
Sbjct: 65  ELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAANA 109

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 78.9 bits (195), Expect = 3e-19
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 1   MSVVQI-SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
            SV  I S +   +  G DK  V+ F+A W   CK +  +F+++S      +V F +   
Sbjct: 15  GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDV 74

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           ++  +++    + A+PTFV  KN + +D V GADP  L   +   ++
Sbjct: 75  DEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA 121

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 77.1 bits (190), Expect = 2e-18
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 3   VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
            +++     + +     ++ + V+ F A W   C  +   F        Y  V       
Sbjct: 22  YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN---YYYVTLVDIDV 78

Query: 60  EDLPKLSLNYKVSAVPTFVILKN----LKPVDRVEGADPESLDKKLQNQAST 107
           +  PKL+  + + A+PTF    N       V  VEGA+   ++K  Q     
Sbjct: 79  DIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCLE 130

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 75.1 bits (185), Expect = 6e-18
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 2   SVVQIS--EELD---VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFA 55
           SV+ I      D    +   + K  VV F A W   CK +  LF+ +S    Y+ +V+F 
Sbjct: 3   SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSN--DYAGKVIFL 60

Query: 56  RCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           +   + +  ++    ++A+PTF + K+    D + GA  + L   +   A+
Sbjct: 61  KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 74.2 bits (183), Expect = 1e-17
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 3   VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
           V Q+ ++ D++        K  V+ F+A W   CK ++    E+S Q     VV  +   
Sbjct: 2   VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA-DNVVVLKVDV 60

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
           ++   +++ Y +S++PTFV LKN   V+   GA+ + L+  ++
Sbjct: 61  DECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 103

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 74.3 bits (183), Expect = 1e-17
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC-IAEDLPKLSLNYKVSAVP 75
            DK  V+  +  W    K M   ++++++  +Y  V+F +    ++   L+    +  VP
Sbjct: 23  GDKPVVLDMFTQWCGPSKAMAPKYEKLAE--EYLDVIFLKLDCNQENKTLAKELGIRVVP 80

Query: 76  TFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           TF ILK    V  V GA  + L + +Q   S
Sbjct: 81  TFKILKENSVVGEVTGAKYDKLLEAIQAARS 111

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 72.8 bits (179), Expect = 5e-17
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC-IAEDLPKLSLNYKVSAVP 75
            DK  V+  +  W   CK M   ++++++  +Y  V+F +    ++   L+    +  VP
Sbjct: 36  GDKPVVLDMFTQWCGPCKAMAPKYEKLAE--EYLDVIFLKLDCNQENKTLAKELGIRVVP 93

Query: 76  TFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           TF ILK    V  V GA  + L + +Q   S
Sbjct: 94  TFKILKENSVVGEVTGAKYDKLLEAIQAARS 124

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 73.0 bits (179), Expect = 6e-17
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 2   SVVQISEE---LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
            + +IS      +V    KD   V+H Y      C  +N     +++  K+ +  F + I
Sbjct: 11  ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLAR--KFPETKFVKAI 68

Query: 59  AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
                +   +Y  + +PT  + KN +   +  G        
Sbjct: 69  VNSCIE---HYHDNCLPTIFVYKNGQIEGKFIGIIECGGIN 106

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 71.7 bits (176), Expect = 1e-16
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 2  SVVQISEE---LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
           + +IS      +V    +D   ++H Y      C  +N     +++  K+ +  F + I
Sbjct: 4  ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLAR--KFPETKFVKAI 61

Query: 59 AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
               +   +Y  + +PT  + KN +   +  G        
Sbjct: 62 VNSCIQ---HYHDNCLPTIFVYKNGQIEAKFIGIIECGGIN 99

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 64.7 bits (158), Expect = 6e-14
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 1   MS--VVQIS---EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFA 55
           MS  +V  +   E L           +V F+A W   C+ +  +   +++      V F 
Sbjct: 1   MSDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAE--ANKDVTFI 58

Query: 56  RCIAEDLPKLSLNYKVSAVPTFVILKN----LKPVDRVEGADPESLDKKLQ 102
           +   +     +  Y VS++P    +K     +K +D+  GAD   +   ++
Sbjct: 59  KVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIE 109

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 64.3 bits (157), Expect = 6e-14
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 1  MS-VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
          MS +  I+ E  +  +     A+V F+ +    CK+M  + D+     +  QV  +   +
Sbjct: 1  MSAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGA--RAPQVAISSVDS 58

Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
          E  P+L        VPT V +++ K      G     
Sbjct: 59 EARPELMKELGFERVPTLVFIRDGKVAKVFSGIMNPR 95

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 66.6 bits (162), Expect = 1e-13
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 2   SVVQISEELD----VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
            V ++         +EK  K  T VVH Y D    C  +N+    ++   +Y  V F + 
Sbjct: 113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAA--EYPMVKFCKI 170

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE 95
            A +       +    +PT ++ K  + +        +
Sbjct: 171 KASNTG-AGDRFSSDVLPTLLVYKGGELLSNFISVTEQ 207

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 148 VPYDTFDILQ---DQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
             Y   ++ +     +++  L  ++   T P V++  + IGG D + E    N+L+P L 
Sbjct: 45  ASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104

Query: 205 Q 205
            
Sbjct: 105 D 105

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 64.7 bits (157), Expect = 4e-13
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 15/113 (13%)

Query: 2   SVVQISEELD----VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
            V ++         +EK  K  T VV+ Y D    C  +N+  + ++   +Y  V F + 
Sbjct: 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAA--EYPMVKFCKI 157

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGAD--------PESLDKKLQ 102
            A +       +    +PT ++ K  + +                  ++  L 
Sbjct: 158 RASNTG-AGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLN 209

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
           M+  +  EEL      + +  ++    +    C  M    + + +   Y+ V     + +
Sbjct: 2   MNTFKTIEELA-TYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLE--NYNYVEKIEILLQ 58

Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA-DPESLDKKLQ 102
           D+ +++  Y V   PT ++  N K + R       E+L++ +Q
Sbjct: 59  DMQEIAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQ 101

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 58.7 bits (142), Expect = 2e-11
 Identities = 14/96 (14%), Positives = 29/96 (30%)

Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
              V+ S   D  K   D   ++      + E      +  E+ ++        A    E
Sbjct: 19  WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE 78

Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
               +   + V   P  ++  + K    + G  P +
Sbjct: 79  QSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWA 114

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 14  KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
           K   +K  V+ F  D    C  ++ +  + S               +     +  + +S 
Sbjct: 19  KSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS-KMAAIYLVDVDQTAVYTQYFDISY 77

Query: 74  VPTFVILKNLKPVDRVEGADPES 96
           +P+ V   N + +    G+   +
Sbjct: 78  IPSTVFFFNGQHMKVDYGSPDHT 100

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 9   ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLN 68
           + ++E+  K  T +V F+A+WS++C+    ++ ++S +   + + F +        +S  
Sbjct: 18  DEELER-DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTR 76

Query: 69  YKVSA------VPTFVILKNLKPVDRVEGADPES 96
           YKVS       +PT ++ +  K   R    D + 
Sbjct: 77  YKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKG 110

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 15/115 (13%)

Query: 2   SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
            V++ S    V         + +F+++ S  C  +  + + ++ Q    Q + A+   + 
Sbjct: 19  QVLEQSMTTPV---------LFYFWSERSQHCLQLTPILESLAAQYN-GQFILAKLDCDA 68

Query: 62  LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-----ESLDKKLQNQASTMKNQ 111
              ++  + + A+PT  + +N +PVD  +G  P       LD  L  +      Q
Sbjct: 69  EQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPREEELXAQQ 123

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 11/117 (9%)

Query: 1   MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
            S+++  +      VE     K  VV FY+     CK M   F+E +K+   S  VF R 
Sbjct: 6   SSIIEFEDMTWSQQVED--SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYG-SSAVFGRI 62

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQASTMK 109
                P  +  Y V   PTF    + +PV    G    S     +   LQ+    ++
Sbjct: 63  NIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEECIR 119

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
           V+ +  +         + AVV F+A+W   C  +  + +E+++   Y QV F +  +++ 
Sbjct: 1   VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAED--YPQVGFGKLNSDEN 58

Query: 63  PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-LDKKLQ 102
           P ++  Y V ++PT +  K+ +PVD + GA P   ++ +++
Sbjct: 59  PDIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIK 99

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 1   MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
              V   +       E+   D   +V F+A W   C+ M   F   +      QV  A+ 
Sbjct: 46  TGKVAGIDPAILARAERD--DLPLLVDFWAPWCGPCRQMAPQFQAAAATLA-GQVRLAKI 102

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQA 105
             +  P ++  +++  +P F++    + + R  GA P S     +  KL  +A
Sbjct: 103 DTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRGKLGARA 155

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFARCIA 59
           ++   I+   ++E+  +    ++ F  D    C  M      +SK+ +    + +AR   
Sbjct: 9   INFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEE 68

Query: 60  EDLPKLSLNYKVSAVPTFVIL-KNLKPVDRVEGADPES-LDKKLQN 103
           E    L+  Y  + VPT V L K        +G   ++ ++  L +
Sbjct: 69  EKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNS 114

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           D   V+ F+A W   C+    +F E + +    +V F +   E  P LS  +++ ++PT 
Sbjct: 55  DLPMVIDFWAPWCGPCRSFAPIFAETAAERA-GKVRFVKVNTEAEPALSTRFRIRSIPTI 113

Query: 78  VILKNLKPVDRVEGADPES-----LDKKLQNQAST 107
           ++ +N K +D + GA P++     LD++L    ++
Sbjct: 114 MLYRNGKMIDMLNGAVPKAPFDNWLDEQLSRDPNS 148

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 2   SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQ--SKYSQVVFARCIA 59
             + +++E   E        +V FYA W   CK +   +++ +K+   +   +  A+  A
Sbjct: 131 VTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 190

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQA 105
                L+  + VS  PT  I +  +P D     +   +   +  Q+
Sbjct: 191 TAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQS 236

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 3/126 (2%)

Query: 2   SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQ--SKYSQVVFARCIA 59
            V+ +++           T ++ FYA W   CK     +++++     K   +  A+  A
Sbjct: 16  GVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA 75

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS-TMKNQPSNITHV 118
                L+  + VS  PT  ILK  + VD       E +  K++  +       P     +
Sbjct: 76  TSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVL 135

Query: 119 PYDTFD 124
             + FD
Sbjct: 136 TKENFD 141

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 50.4 bits (121), Expect = 9e-09
 Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 1   MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
           MS+ ++     +   Y + K  +V F       C+ +  + +E+    +     F     
Sbjct: 4   MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYE-ESFGFYYVDV 62

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQN 103
           E+   L   + +  VP  +  K+ +   ++ G   +      +   L++
Sbjct: 63  EEEKTLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVLED 111

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFARCIAED 61
           V    +  +  KY  DK A+V FYADW   CK +  + DE++K+  Y  Q+V  +   E 
Sbjct: 23  VYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKE--YDGQIVIYKVDTEK 80

Query: 62  LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQAS 106
             +L+  + + ++P+ + +      +  +GA P++     +D+ L  +  
Sbjct: 81  EQELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLKKEG 130

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
           +          KY  DK A+V FYADW   CK +  + +E+SK+    ++   +   +  
Sbjct: 36  IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA-GKIYIYKVNVDKE 94

Query: 63  PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQ 104
           P+L+ ++ + ++PT   +          GA  +      +DK L  Q
Sbjct: 95  PELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVLLKQ 141

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 17  KDKTAVVHFYADWSDECKHM--NTLFDEMSKQSKYSQVVFARCIAE--DLPKLSLNYKVS 72
           +DK   V  +  W   CK +      D +         V  +   E  +  +L   Y V 
Sbjct: 26  EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVH 85

Query: 73  AVPTFVILK-NLKPVDRVEGA-DPESLDKKLQN 103
           A PT + +  + + V R+ GA D   L KK++ 
Sbjct: 86  AYPTLLFINSSGEVVYRLVGAEDAPELLKKVKL 118

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 17  KDKTAVVHFYADWSDECKHM-NTLFDEMSKQSKYSQVVFARCIA----EDLPKLSLNYKV 71
           K K  ++  YADW   CK      F +   Q   +  V  +            L  +  V
Sbjct: 30  KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV 89

Query: 72  SAVPTFVILK---NLKPVDRVEGA-DPESLDKKLQNQAST 107
             +PT +         P  RV G  D E+    L+++   
Sbjct: 90  LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPH 129

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA------EDLPKLSLNYKV 71
              A++  Y+     C        + SK+     V+F                      V
Sbjct: 31  QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGV 90

Query: 72  SAVPTFVILKNLKPVDRVEGADPES-LDKKLQ 102
              PT V  K  + VD++ GA P S   +K +
Sbjct: 91  EGTPTLVFYKEGRIVDKLVGATPWSLKVEKAR 122

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 10/128 (7%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
             +  +V F+A WS   + +     + S      Q+            L   Y + A PT
Sbjct: 454 DKEPWLVDFFAPWSPPSRALLPELRKASTLLY-GQLKVGTLDCTIHEGLCNMYNIQAYPT 512

Query: 77  FVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVREG-- 134
            V+       +       E + + ++        +  ++  +   TF+ L  Q   +   
Sbjct: 513 TVVFNQSSIHEYEGHHSAEQILEFIE------DLRNPSVVSLTPSTFNELVKQRKHDEVW 566

Query: 135 -LKIYSNW 141
            +  YS W
Sbjct: 567 MVDFYSPW 574

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 47.8 bits (113), Expect = 9e-07
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 8/130 (6%)

Query: 13  EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS 72
                 +   V+FY+  S     +   + E +K+     +        D   L     V+
Sbjct: 128 AAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVD-GLLRIGAVNCGDDRMLCRMKGVN 186

Query: 73  AVPTFVILKNLKPVDRVEGA-DPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEV 131
           + P+  I ++     +  G    ESL               S +T +    F    +   
Sbjct: 187 SYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHV------RSTVTELSTGNFVNAIETAF 240

Query: 132 REGLKIYSNW 141
             G+     +
Sbjct: 241 AAGVGWLITF 250

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 8/128 (6%)

Query: 2   SVVQISEE---LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
           SVV ++       V++   D+  +V FY+ WS   + +   +  M++      +      
Sbjct: 544 SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT-GLINVGSVD 602

Query: 59  AEDLPKLSLNYKVSAVPTFVILKN--LKPVDRVEGADPESLDKKLQNQASTMKNQPSNIT 116
                       V   P          K                L++        P    
Sbjct: 603 CGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGL--GFLPQASI 660

Query: 117 HVPYDTFD 124
            +   TF+
Sbjct: 661 DLTPQTFN 668

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 18/115 (15%), Positives = 46/115 (40%), Gaps = 6/115 (5%)

Query: 2   SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
           S+    +  + +        VV FYA WS   ++    F+ +++  K  +V   +   + 
Sbjct: 659 SIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIK-GKVRAGKVDCQA 717

Query: 62  LPKLSLNYKVSAVPTFVIL-----KNLKPVDRVEGADPESLDKKLQNQASTMKNQ 111
            P+      + A P+  +      K     +++   D +++   +  +  T+++Q
Sbjct: 718 YPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQ 772

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 1   MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
           +  +Q +       V    K+   V++F+A W   C   +T  D++ K     ++   + 
Sbjct: 24  VPRLQQNGSNIINGVNM--KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG-KRIYLLKV 80

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
             +    L+  + V ++PT ++LKN   + R +     +
Sbjct: 81  DLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVSSN 119

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
                +V F+A W   C+ ++ + +E+++     ++   +   ++ P L+  Y V +VPT
Sbjct: 49  GAPLTLVDFFAPWCGPCRLVSPILEELARDHA-GRLKVVKVNVDEHPGLAARYGVRSVPT 107

Query: 77  FVILKNLKPVDRVEGADPES-----LDKKLQNQ 104
            V+ +   PV    GA P       L   L+ +
Sbjct: 108 LVLFRRGAPVATWVGASPRRVLEERLRPYLEGR 140

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
              + ++EE   E    +K  +V  +A+W   C     ++ +++++ K  + VF R   +
Sbjct: 4   DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK-GKAVFGRLNVD 62

Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQ 102
           +  K++  Y V  +PT +I  N + VD + GA  E      ++K L+
Sbjct: 63  ENQKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYLK 109

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 1   MSVVQISEELDVEK--YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI 58
            +   I +  D +      +   VV F+A W   CK +    ++M  +    +VV A+  
Sbjct: 12  STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQH-GKVVMAKVD 70

Query: 59  AEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
            +D   L++ Y+VSAVPT + +KN   VD+  G   E 
Sbjct: 71  IDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDED 108

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 1  MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
          MSV+++++E  + E    DK  +V F+A W   C+ +  + +E++K+ +  +V   +   
Sbjct: 1  MSVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE-GKVKVVKVNV 59

Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
          ++ P  +  Y + ++PT ++ KN + VDR+ GA P+ 
Sbjct: 60 DENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKE 96

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 25/108 (23%), Positives = 63/108 (58%), Gaps = 6/108 (5%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
            ++++++   E  G+    +V F+A+W   C+ +  + +E++K+ +  +++ A+   ++ 
Sbjct: 3   PIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE-GKLLVAKLDVDEN 61

Query: 63  PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQA 105
           PK ++ Y+V ++PT ++ K+ +PV+ + GA P+      ++K L   A
Sbjct: 62  PKTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPATA 109

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 18/114 (15%), Positives = 50/114 (43%), Gaps = 13/114 (11%)

Query: 1   MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
           M++V+ ++     +      +   +  F+A W    K +  + +E+ ++    ++   + 
Sbjct: 1   MAIVKATDQSFSAET----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG-DKLKIVKI 55

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQNQAS 106
             ++  + +  Y V ++PT ++LK+ + V+   G  P+      ++K L     
Sbjct: 56  DVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHLLEHHH 109

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 142 PTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIP 201
            +   V+  +     +  +++  L   +   T P +Y+N + IGG D ++EL+   +L  
Sbjct: 53  RSKVLVLQLNDMK--EGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEE 110

Query: 202 TLDQ 205
            L+ 
Sbjct: 111 LLEP 114

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 44.9 bits (107), Expect = 8e-07
 Identities = 19/99 (19%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 1  MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
          M    +++   +  V +       +V F+A W   C+ +  + DE++ + K  ++   + 
Sbjct: 1  MEAGAVNDDTFKNVVLE--SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK-DKLKCVKL 57

Query: 58 IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
            ++ P ++  Y + ++PT ++ K  K  + + GA P++
Sbjct: 58 NTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKA 96

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           ++  +V+F+A W   C+ M+ L +  +      ++   +   +  P     YKV  VP  
Sbjct: 25  EQPVLVYFWASWCGPCQLMSPLINLAANTYS-DRLKVVKLEIDPNPTTVKKYKVEGVPAL 83

Query: 78  VILKNLKPVDRVEGADPES-----LDKKLQN 103
            ++K  + +D  EG   +      LD  L N
Sbjct: 84  RLVKGEQILDSTEGVISKDKLLSFLDTHLNN 114

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 24/111 (21%), Positives = 57/111 (51%), Gaps = 11/111 (9%)

Query: 1   MSVVQISE---ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
            + +++++     DV     +K  +V F+A W   CK +  + +E++ +   + +  A+ 
Sbjct: 12  SATIKVTDASFATDVLS--SNKPVLVDFWATWCGPCKMVAPVLEEIATERA-TDLTVAKL 68

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQN 103
             +  P+ + N++V ++PT ++ K+ +PV R+ GA  ++     L   + N
Sbjct: 69  DVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPN 119

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 21/96 (21%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 1  MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
          M++V++++  D +   +    +V F+A     CK +  + +E++   +  +    +   +
Sbjct: 3  MAIVKVTDA-DFDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYE-GKADILKLDVD 60

Query: 61 DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
          + P  +  Y+V ++PT ++ K+ +PVD+V G  P+ 
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKE 96

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           D   +V F+A W   C+ M  + +E ++     +V  A+   ++ P+ +  + + ++PT 
Sbjct: 17  DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA-DKVTVAKLNVDENPETTSQFGIMSIPTL 75

Query: 78  VILKNLKPVDRVEGADPES-----LDKKLQ 102
           ++ K  +PV ++ G  P+      L   LQ
Sbjct: 76  ILFKGGRPVKQLIGYQPKEQLEAQLADVLQ 105

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 8   EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMS---KQSKYSQVVFARCIAEDLPK 64
           E     +       ++ F       C     +  + +    ++   +++     A + P+
Sbjct: 124 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE 183

Query: 65  LSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKL 101
            +  Y V AVP  VI  N +     EGA PE      L   L
Sbjct: 184 WADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 145 PQVVPYDTFDILQD-QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
             ++ +       D  E+++ L+  +   T P+V++  E IGG   ++ +    +L+  L
Sbjct: 39  EGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRL 98

Query: 204 DQ 205
            Q
Sbjct: 99  QQ 100

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 14/70 (20%), Positives = 34/70 (48%)

Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          +   ++ FYA W   C+++   ++  ++  +  +V  A+    + P LS  + ++A+PT 
Sbjct: 22 EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTI 81

Query: 78 VILKNLKPVD 87
             K+ +   
Sbjct: 82 YHCKDGEFRR 91

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 7  SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI---AEDLP 63
                +   K +  ++ F       C   +         +   +    + +       P
Sbjct: 7  HHHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPP 66

Query: 64 KLSLNYKVSAVPTFVILKNLKPVDRVEG 91
           L L   V+  PTFV++       R+EG
Sbjct: 67 GLELARPVTFTPTFVLMAGDVESGRLEG 94

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 16/91 (17%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           DK  +V F+A W   C+ +    + ++ +    ++   +   ++ P  +  Y V ++PT 
Sbjct: 23  DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG-DKIEIVKLNIDENPGTAAKYGVMSIPTL 81

Query: 78  VILKNLKPVDRVEGADPES-----LDKKLQN 103
            + +  +    + GA P++     L+  + +
Sbjct: 82  NVYQGGEVAKTIVGAKPKAAIVRDLEDFIAD 112

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 16/115 (13%), Positives = 41/115 (35%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
                +  F+A W   CK+M   + + ++      +  A+    +   L + + +   P+
Sbjct: 30  SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS 89

Query: 77  FVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEV 131
             I KN    + ++   P + +  +Q      +   + +  +P    +      V
Sbjct: 90  LKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPV 144

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSK--QSKYSQVVFAR--CIAEDLPKLSLNYKVS 72
             K  +V +YA W   CK +   + E++    +  S V+ A+      D+        + 
Sbjct: 375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRG----VVIE 430

Query: 73  AVPTFVILKNLKPVDRVE 90
             PT V+    K  + V 
Sbjct: 431 GYPTIVLYPGGKKSESVV 448

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 2   SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK--YSQVVFARCIA 59
           +V+ ++E  + +    +    + FYA W   CK +   ++E+SK+     + V  A    
Sbjct: 6   TVLALTEN-NFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 64

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA-DPESLDKKLQNQA 105
                +   Y V   PT ++ +  K V    G  D +SL + + +QA
Sbjct: 65  TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQA 111

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
             ++  D     E+R  ++  S   T+PQ+++ +  +GG D +  L+   KL   L
Sbjct: 31  AEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDEGKLDSLL 86

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
              +V F+A+W   CK +     E+ K+    +V  A+   +D P+    Y+V ++PT 
Sbjct: 20 SGLVLVDFWAEWCGPCKMIGPALGEIGKEFA-GKVTVAKVNIDDNPETPNAYQVRSIPTL 78

Query: 78 VILKNLKPVDRVEGADPES 96
          +++++ K +D+  GA P+S
Sbjct: 79 MLVRDGKVIDKKVGALPKS 97

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
           V +    I  +   RE +   S   T PQ++++ + IGG D +  L     L P L
Sbjct: 26  VSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLL 81

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 145 PQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
             V+  D  D      V+E L   +N  T P ++VN   +GG D   +   +  L   L 
Sbjct: 44  CNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101

Query: 205 QPPSSDLEN 213
           +  + D EN
Sbjct: 102 EDLAYDAEN 110

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           D   +V F+A+W    K +  + DE++ + +  ++  A+   +  P  +  Y +  +PT 
Sbjct: 40  DGAILVDFWAEWCGPAKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTL 98

Query: 78  VILKNLKPVDRVEGADPES 96
           ++ KN +      GA  + 
Sbjct: 99  LLFKNGEVAATKVGALSKG 117

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          +   +V F+A W   CK +  + DE++K+    ++   +   ++ P ++  Y + ++PT 
Sbjct: 18 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYS-GKIAVYKLNTDEAPGIATQYNIRSIPTV 76

Query: 78 VILKNLKPVDRVEGADPES 96
          +  KN +  + + GA P+S
Sbjct: 77 LFFKNGERKESIIGAVPKS 95

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 23/188 (12%), Positives = 56/188 (29%), Gaps = 28/188 (14%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ----VVFARCIAEDLPKLSLNYKVS 72
           +  +  +   A   + C+    L  E  +    +     +           + +  Y V 
Sbjct: 21  EPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVD 80

Query: 73  AVPTFVILKNLKPVDRVEGA-DPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEV 131
            VPT VI  +     R  G          +      + +       +   T ++LQ  ++
Sbjct: 81  RVPTIVIEGDKDYGIRYIGLPAGLEFTTLIN----GIFHVSQRKPQLSEKTLELLQVVDI 136

Query: 132 REGLKIY-SNWPTY-PQVVPY-------------DTFDILQDQEVREGLKIYSNWPTYPQ 176
              + ++ +    Y P                     D  ++Q++ E  ++       P+
Sbjct: 137 PIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVG----VPK 192

Query: 177 VYVNTELI 184
           + +N  + 
Sbjct: 193 IVINKGVA 200

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWP--TYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
           + Y   DI QD  +R+ ++  +  P  T PQ+       G  ++  E    + L   L
Sbjct: 33  IQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 12 VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKV 71
          +   G     +V F+A W    K +   ++  + + K   V  A+            Y V
Sbjct: 15 ISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK-GIVPLAKVDCTANTNTCNKYGV 73

Query: 72 SAVPTFVILKNLKPVDRVEG 91
          S  PT  I ++ +     +G
Sbjct: 74 SGYPTLKIFRDGEEAGAYDG 93

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 41.8 bits (97), Expect = 9e-05
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFAR--CIAEDLPKLSLNYKVSA 73
           ++K  ++ FYA W   CK++   + E+ ++      +V A+    A D+P     Y+V  
Sbjct: 369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPS---PYEVRG 425

Query: 74  VPTFVILKNLKPVDRVE 90
            PT       K ++  +
Sbjct: 426 FPTIYFSPANKKLNPKK 442

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
          D   +V F+A+W   CK +  + DE++ + +  ++  A+   +  P  +  Y +  +PT 
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTL 78

Query: 78 VILKNLKPVDRVEGADPES 96
          ++ KN +      GA  + 
Sbjct: 79 LLFKNGEVAATKVGALSKG 97

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQ--SKYSQVVFARCIAEDLPKLSLNYKVSAV 74
              T ++ FYA W   CK     +++++         +  A+  A     L+  + VS  
Sbjct: 33  DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGY 92

Query: 75  PTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVP 119
           PT  ILK  + VD       E +  K++  +      P  +T  P
Sbjct: 93  PTIKILKKGQAVDYDGSRTQEEIVAKVREVSQPDWTPPPEVTSGP 137

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 1   MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
            + + ++ +  + +        VV FYA W   C++    F+ +++  K  +V   +   
Sbjct: 3   QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK-GKVRAGKVDC 61

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKK 100
           +  P+      + A P+  + +  +    +      S D K
Sbjct: 62  QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAK 102

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 3/85 (3%)

Query: 18  DKTAVVHFYADWSDECKHM-NTLFDEMSKQSKYSQVVFARCIAEDLPKLS-LNYKVSAVP 75
               +V  +  W   CK +     +           V      E+ PK    +     +P
Sbjct: 46  GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIP 105

Query: 76  TFVIL-KNLKPVDRVEGADPESLDK 99
             + L  + K    +   +     K
Sbjct: 106 RILFLDPSGKVHPEIINENGNPSYK 130

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 42.0 bits (98), Expect = 7e-05
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 138 YSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVAN 197
                +   V+  +     +  +++  L   +   T P +Y+N + IGG D ++EL+   
Sbjct: 285 LKVPRSKVLVLQLNDMK--EGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETG 342

Query: 198 KLIPTLDQ 205
           +L   L+ 
Sbjct: 343 ELEELLEP 350

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           D   +V F+A+W   CK +  + DE++ + +  ++  A+   +  P  +  Y +  +PT 
Sbjct: 30  DGAILVDFWAEWCGPCKMIAPILDEIADEYQ-GKLTVAKLNIDQNPGTAPKYGIRGIPTL 88

Query: 78  VILKNLKPVDRVEGADPES-LDKKLQNQASTMKNQ 111
           ++ KN +      GA  +  L + L    +    +
Sbjct: 89  LLFKNGEVAATKVGALSKGQLKEFLDANLAGSAME 123

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 8/97 (8%), Positives = 31/97 (31%), Gaps = 6/97 (6%)

Query: 17  KDKTAVVHFYADWSDECKHMNTL------FDEMSKQSKYSQVVFARCIAEDLPKLSLNYK 70
           K +   + ++    D+              +  ++  +   V F    +E    ++    
Sbjct: 29  KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLG 88

Query: 71  VSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAST 107
           ++   +  + K  + ++       ++L + L +    
Sbjct: 89  LTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVLED 125

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 10/72 (13%)

Query: 148 VPYDTFDILQDQEVREGL--------KIYSNWPTYPQVYVNTELIGGLDIIKELQVANKL 199
           + ++  DI   +E R+ +        K     P  PQ++      G  D   E + +N +
Sbjct: 39  IEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDYDSFFESKESNTV 98

Query: 200 IPTL--DQPPSS 209
              L     PSS
Sbjct: 99  FSFLGLKSGPSS 110

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 135 LKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQ 194
            +  +   +   V+  D        E+++ L+  S   T P VY+N + IGG   ++ L+
Sbjct: 58  FQELNVPKSKALVLELDEMS--NGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLK 115

Query: 195 VANKLIPTL 203
              KL   L
Sbjct: 116 KNGKLAEIL 124

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 17/135 (12%), Positives = 35/135 (25%), Gaps = 7/135 (5%)

Query: 16  GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK-------YSQVVFARCIAEDLPKLSLN 68
                 +V FY D    C+   + F + +   K             A         L   
Sbjct: 40  APLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRK 99

Query: 69  YKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQD 128
           Y ++ VP              E     SL+      +    ++  +      +   ++ D
Sbjct: 100 YDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKHMVVDD 159

Query: 129 QEVREGLKIYSNWPT 143
                 + ++    T
Sbjct: 160 SLKERCIDMHFKLYT 174

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 4/107 (3%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY---SQVVFARCIAEDLPKLSLNYKVSA 73
            +   +V FYA W   CK++   +   + + K     +V  A   A     L+  Y +  
Sbjct: 24  SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRG 83

Query: 74  VPTFVILKNLKPVDRVEGA-DPESLDKKLQNQASTMKNQPSNITHVP 119
            PT  I +  +     +G      +  +  +  S     P  +   P
Sbjct: 84  FPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLESGP 130

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 17  KDKTAVVHFYADWSDECKHM--NTLFDEMSKQSKYSQVVFARCIAEDL--PKLSLNYKVS 72
             +  +V+F+++    C+ M    L D    +   ++ V A    +     +L+  Y+V 
Sbjct: 18  HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVP 77

Query: 73  AVPTFVIL----KNLKPVDRVEGA-DPESLDKKLQ 102
             PTFV L       + V R+ G+       K+L+
Sbjct: 78  GTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELR 112

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 148 VPYDTFDILQDQEVR-EGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
           V +  + I  D E R       +   + PQ++++ + IGG D I  L  A KL P L
Sbjct: 41  VEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIYALDGAGKLDPLL 97

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 13/129 (10%)

Query: 15  YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK--YSQVVFAR--CIAEDLPKLSLNYK 70
            G      V F+A W          + E++   K     +  A   C  E    +   + 
Sbjct: 27  LGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFN 86

Query: 71  VSAVPTFVILKN-----LKPVDRVEGADPESLD----KKLQNQASTMKNQPSNITHVPYD 121
           ++  PT    +              GA+ ++L       L++   T       +     +
Sbjct: 87  IAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLN 146

Query: 122 TFDILQDQE 130
             D    + 
Sbjct: 147 DIDGFFTRN 155

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 19  KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
           K  +  F +     C     + +E++ +     V        + P+ ++ Y + AVPT V
Sbjct: 3   KVKIELFTSPMCPHCPAAKRVVEEVANEMP-DAVEVEYINVMENPQKAMEYGIMAVPTIV 61

Query: 79  ILKNLKPVDRVEGADPES-----LDKKL 101
           I  +++ +    GA  +      + K+L
Sbjct: 62  INGDVEFI----GAPTKEALVEAIKKRL 85

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 145 PQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD 204
            +VV  D  +     + ++ L   +   T P+++VN   IGG      L    KL+P + 
Sbjct: 76  YKVVELDLLE--YGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133

Query: 205 Q 205
           Q
Sbjct: 134 Q 134

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ-VVFARCIAEDLPKLSLNYKVSAVP 75
             K  ++ FYA W   CK +  ++  + K+ K  + +V A+  A      +  YKV   P
Sbjct: 24  PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFP 83

Query: 76  TFVILKN---LKPVDRVEGA-DPESLDKKLQNQAST 107
           T     +     P+    G  D E L K +   A+ 
Sbjct: 84  TIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATK 119

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 159 QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
           +E++E +K+ +   T P + VN    GG + IK+L    KL+ +L
Sbjct: 56  EELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESL 100

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQ--SKYSQVVFARCIAEDLPKLSLNYKVSAV 74
            K  +V FYA W   CK +   + + + +  ++ S++  A+  A +   L+  Y V   
Sbjct: 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 82

Query: 75 PTFVILKNLKPVDRVE 90
          PT    +N       E
Sbjct: 83 PTIKFFRNGDTASPKE 98

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Length = 160

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 18  DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF 77
           ++   + F  D+  +C  M+ L  +++   K +  V       ++P  +  Y++    + 
Sbjct: 41  ERLVCIRFGHDYDPDCMKMDELLYKVADDIK-NFCVIYLVDITEVPDFNTMYELYDPVSV 99

Query: 78  VILKNLKPVDRVEGADPE 95
           +     K +    G    
Sbjct: 100 MFFYRNKHMMIDLGTGNN 117

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ----VVFAR--CIAEDLPKLSLNYK 70
             K  ++ FYA W   CK +   ++E+      S+    VV A+    A D+P      +
Sbjct: 24  DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVP-----DE 78

Query: 71  VSAVPTFVILKN---LKPVDRVEGADPESLDKKLQNQAS 106
           +   PT  +       +PV        E L K +     
Sbjct: 79  IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDE----MSKQSKYSQVVFARCIAEDLPKLSLNYKVS 72
            +K   V +Y  WS        L+D+     S++  +   V AR   E  P +    +VS
Sbjct: 32  PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVS 91

Query: 73  AVPTFVILKNLKPVDRVE 90
             PT      +   +  E
Sbjct: 92  GFPTMRYYTRIDKQEPFE 109

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 14/110 (12%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHM-------NTLFDEMSKQSKYSQVVFA 55
           VV ++E+ + ++  K    +  +Y +     K           + + +++  ++  + F 
Sbjct: 13  VVSLTEK-NFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFV 71

Query: 56  RCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQA 105
              A+   KL+         +  +LK  + ++       + L + L +  
Sbjct: 72  MVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGEFAADVLVEFLLDLI 121

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 3  VVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
          V++++    + E    D   +V FYA W   C+ +   + + +   K   V      A+ 
Sbjct: 19 VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK-DVVKVGAVNADK 77

Query: 62 LPKLSLNYKVSAVPTFVILKN 82
             L   Y V   PT  I   
Sbjct: 78 HQSLGGQYGVQGFPTIKIFGA 98

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 13/128 (10%)

Query: 15  YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK--YSQVVFAR--CIAEDLPKLSLNYK 70
            G      V F+A W   C      +  +++  K     +  A   C  E    +  ++ 
Sbjct: 27  LGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFN 86

Query: 71  VSAVPT--FVILKNLKPVDRVEGADPESLD-------KKLQNQASTMKNQPSNITHVPYD 121
           +   PT  F           V       +          L++   T       +     +
Sbjct: 87  IPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAXLE 146

Query: 122 TFDILQDQ 129
             D    +
Sbjct: 147 EIDGFFAR 154

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 145 PQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
           P VV  D     Q  ++++ L+  +   T P V+V  + IGG     +L     L   L
Sbjct: 46  PLVVELDQLG-PQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELML 103

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Length = 75

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG--LDIIKELQVA 196
           + Y+T DI  D E R+ +     +   P V V+ E   G   + IK+LQ A
Sbjct: 26  LAYNTVDISLDDEARDYVMAL-GYVQAPVVEVDGEHWSGFRPERIKQLQAA 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.96
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.94
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.92
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.91
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.91
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.9
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.9
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.9
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.9
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.9
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.9
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.89
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.89
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.89
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.89
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.89
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.89
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.89
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.89
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.89
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.89
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.88
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.88
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.88
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.88
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.88
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.88
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.88
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.88
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.88
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.88
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.87
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.87
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.87
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.87
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.87
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.87
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.87
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.87
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.87
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.87
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.87
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.86
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.86
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.86
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.86
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.86
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.86
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.86
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.86
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.86
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.86
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.86
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.86
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.86
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.86
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.86
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.86
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.86
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.86
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.85
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.85
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.85
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.85
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.85
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.85
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.85
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.85
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.85
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.84
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.84
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.84
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.84
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.84
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.84
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.84
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.84
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.83
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.83
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.83
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.83
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.83
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.72
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	99.83
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.83
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.82
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.82
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.82
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.82
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.81
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.8
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.8
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.79
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.78
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.78
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.78
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.77
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.77
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.76
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.76
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.76
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.76
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.75
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.75
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.74
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.74
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.74
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.74
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.73
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.72
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	99.72
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.72
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.55
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.71
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.71
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.71
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.71
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.7
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	99.69
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.68
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.68
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.67
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.67
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.66
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.65
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.65
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.65
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.65
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	99.65
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.64
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.64
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.64
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.64
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.64
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	99.63
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.63
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.63
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.63
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.63
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	99.62
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.62
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.61
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.61
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.59
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.59
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.58
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.58
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.58
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.58
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.58
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.57
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.55
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.55
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.55
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	99.54
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.54
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.53
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.53
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.53
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.52
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.52
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	99.52
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.52
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.52
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.51
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.51
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.5
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.5
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.5
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	99.48
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.48
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	99.47
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.47
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.46
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.46
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	99.46
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	99.45
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	99.45
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.44
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.43
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.14
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.42
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.42
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.41
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	99.4
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.07
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.36
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.35
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.34
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.33
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.33
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.33
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.33
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.31
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.29
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.29
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.29
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.28
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.26
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.26
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.24
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.23
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.23
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	99.22
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.19
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.18
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.18
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.17
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.15
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.15
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.15
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	99.13
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	99.12
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.12
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.11
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.11
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	99.11
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	99.1
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.1
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.1
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.1
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.09
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.09
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.09
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.08
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.07
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.06
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.04
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	99.03
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.03
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.02
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.02
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.0
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.96
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.95
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.94
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	98.94
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.91
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.91
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.87
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.87
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.87
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.84
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.84
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.82
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.8
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.79
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.79
3me7_A	170	Putative uncharacterized protein; electron transfe	98.77
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.76
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.75
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.75
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.74
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.74
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.73
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.73
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.72
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.71
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.66
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.66
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.65
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.64
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.62
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.61
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.6
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.6
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.59
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.59
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.59
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.58
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.58
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.57
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.57
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.57
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.54
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.54
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.53
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.53
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.52
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.51
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.5
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.49
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.48
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.46
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.45
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.44
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.43
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.37
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.36
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.36
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.35
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	98.33
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.31
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	98.3
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.27
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.26
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.2
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.19
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	98.18
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	98.17
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.17
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.15
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	98.15
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	98.03
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.97
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	97.94
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.88
2qsi_A	137	Putative hydrogenase expression/formation protein;	97.82
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.8
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	97.78
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	97.74
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.72
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	97.69
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	97.68
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.68
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	97.65
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	97.63
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	97.57
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.55
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	97.45
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	97.44
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	97.41
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	97.41
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	97.38
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	97.38
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	97.38
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	97.37
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.37
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	97.35
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	97.35
1mek_A	120	Protein disulfide isomerase; electron transport, r	97.34
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	97.31
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	97.3
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	97.3
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	97.29
1ttz_A	87	Conserved hypothetical protein; structural genomic	97.29
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	97.28
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	97.28
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	97.26
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	97.23
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.22
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	97.21
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.19
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	97.18
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	97.18
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.17
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	97.16
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.15
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.15
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	97.13
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.12
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	97.11
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	97.09
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	97.07
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	97.05
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.02
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	97.02
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	97.01
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	97.01
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	97.0
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	97.0
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.97
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	96.97
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	96.96
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	96.96
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	96.96
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	96.95
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	96.94
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	96.91
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	96.9
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.9
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	96.88
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	96.87
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.86
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	96.83
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	96.78
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.77
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.76
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	96.74
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.73
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.72
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.7
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	96.7
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	96.65
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.64
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.62
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	95.63
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.57
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	96.52
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.51
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	96.48
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.47
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	96.47
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	96.47
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	96.46
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	96.42
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	96.41
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	96.38
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	96.35
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	96.35
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.31
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	96.29
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	96.26
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.23
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.22
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	96.19
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	96.19
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	96.09
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.08
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	96.05
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	95.97
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	95.92
2l57_A	126	Uncharacterized protein; structural genomics, unkn	95.86
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	95.83
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	95.76
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	95.73
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	95.72
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	95.7
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	95.68
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	95.63
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	95.62
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	95.61
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	95.57
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	95.5
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	95.36
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	95.32
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	95.05
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	95.02
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	95.01
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	94.99
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	94.81
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	94.8
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	94.75
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	94.74
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	94.69
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	94.69
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	94.5
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	94.35
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	94.26
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	94.02
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	94.01
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	93.6
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	93.59
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	93.33
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	93.18
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	92.28
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	92.05
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	91.95
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	91.9
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	91.37
2kuc_A	130	Putative disulphide-isomerase; structural genomics	91.1
1wwj_A	105	Circadian clock protein KAIB; 1.90A {Synechocystis	90.71
3ira_A	173	Conserved protein; methanosarcina mazei,structural	90.51
3l78_A	120	Regulatory protein SPX; transcription, transcripti	90.24
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	89.74
3fz4_A	120	Putative arsenate reductase; APC61768, structural	88.48
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	87.77
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	87.52
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	87.5
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	86.66
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	85.67
3gkx_A	120	Putative ARSC family related protein; ARSC family	84.78
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	84.1
3ktb_A	106	Arsenical resistance operon trans-acting represso;	83.27
3kgk_A	110	Arsenical resistance operon trans-acting represso;	81.47
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	80.38

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.96  E-value=1.3e-28  Score=195.99  Aligned_cols=181  Identities=18%  Similarity=0.334  Sum_probs=145.6

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC--cEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS--QVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~--~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |++++++.+...+.++++++|+|||+||++|+++.|.|+++++.+++.  ++.++.||++++++++++|+|+++||+++|
T Consensus        17 v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   96 (241)
T 3idv_A           17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKIL   96 (241)
T ss_dssp             EEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEEE
Confidence            778898878888889999999999999999999999999999988752  399999999999999999999999999999


Q ss_pred             eCCCCcccccCCCchhHHHHHHHHhcc-CCCCCCcccccCCCcccccchhhhhhhheeccCC-CCCCCC-----------
Q psy15246         81 KNLKPVDRVEGADPESLDKKLQNQAST-MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNW-PTYPQV-----------  147 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~~l~~~i~~~~~~-~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apW-P~~~~~-----------  147 (213)
                      ++|+.+.+.++.+..+|.+++++.+.. ....++....++..+|+.+.......+|.||++| |.+.++           
T Consensus        97 ~~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~  176 (241)
T 3idv_A           97 KKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKEL  176 (241)
T ss_dssp             ETTEEEECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHH
T ss_pred             cCCCcccccCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHH
Confidence            999877544445555899999998764 3333444556777888755444445889999999 333322           


Q ss_pred             ------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        148 ------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       148 ------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                            +.|+.+|++.++++++.+. ..++||+ .+|.+|+.+.
T Consensus       177 ~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~g~~~~  218 (241)
T 3idv_A          177 SKRSPPIPLAKVDATAETDLAKRFD-VSGYPTL-KIFRKGRPYD  218 (241)
T ss_dssp             HTSSSCCCEEEEETTTCHHHHHHTT-CCSSSEE-EEEETTEEEE
T ss_pred             hccCCcEEEEEEECCCCHHHHHHcC-CcccCEE-EEEECCeEEE
Confidence                  6789999999999888776 6778887 5777888653

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.94  E-value=1.7e-26  Score=162.08  Aligned_cols=100  Identities=25%  Similarity=0.515  Sum_probs=90.0

Q ss_pred             eEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      |.++++ +.+...+  +++++++|+|||+||++|+.+.|.++++++.++  ++.|++||++++++++++|+|+++||+++
T Consensus         2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~V~~~PT~~~   79 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVDECEDIAQDNQIACMPTFLF   79 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC--CeEEEEEecccCHHHHHHcCCCeecEEEE
Confidence            667877 4444445  457899999999999999999999999999998  79999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCchhHHHHHHHH
Q psy15246         80 LKNLKPVDRVEGADPESLDKKLQNQ  104 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~~l~~~i~~~  104 (213)
                      |++|+.+.++.|.+.++|.++|+++
T Consensus        80 ~~~G~~v~~~~G~~~~~l~~~i~k~  104 (105)
T 3zzx_A           80 MKNGQKLDSLSGANYDKLLELVEKN  104 (105)
T ss_dssp             EETTEEEEEEESCCHHHHHHHHHHH
T ss_pred             EECCEEEEEEeCcCHHHHHHHHHhc
Confidence            9999999999998877899999875

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.92  E-value=4.7e-25  Score=163.25  Aligned_cols=106  Identities=10%  Similarity=0.175  Sum_probs=90.5

Q ss_pred             CceEEeCC-chhhh-hh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          1 MSVVQISE-ELDVE-KY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         1 M~v~~l~~-~~~~~-~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      |.+.++++ +.+.+ ++ .++++++|.|||+||++|+.+.|.++++++++++ .+.|++||+|++++++.+|+|+++||+
T Consensus        21 ~mv~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe~~e~a~~y~V~siPT~   99 (160)
T 2av4_A           21 FMLQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITEVPDFNTMYELYDPVSV   99 (160)
T ss_dssp             -CCEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTTTTCCSSEEE
T ss_pred             hhhhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHcCCCCCCEE
Confidence            34678887 33333 34 4789999999999999999999999999999986 799999999999999999999999999


Q ss_pred             EEEeCCCCc--c-------cccCCCc--hhHHHHHHHHhcc
Q psy15246         78 VILKNLKPV--D-------RVEGADP--ESLDKKLQNQAST  107 (213)
Q Consensus        78 ~~~~~g~~~--~-------~~~g~~~--~~l~~~i~~~~~~  107 (213)
                      ++|++|+.+  .       +..|..+  ++|.++|+.++..
T Consensus       100 ~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~  140 (160)
T 2av4_A          100 MFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRG  140 (160)
T ss_dssp             EEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHH
Confidence            999999987  4       7888755  4799999887643

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.91  E-value=3e-24  Score=156.33  Aligned_cols=102  Identities=15%  Similarity=0.157  Sum_probs=91.7

Q ss_pred             EEeCCchhhhhh-cCCCeEEEEEEcCCC--HHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          4 VQISEELDVEKY-GKDKTAVVHFYADWS--DECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         4 ~~l~~~~~~~~~-~~~~~~vV~F~a~wC--~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      .++|++++.+.+ +++++++|.|||+||  ++|+.+.|.+++++++|.+ ++.|++||.+++++++.+|+|+++||+++|
T Consensus        18 ~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe~~~la~~ygV~siPTlilF   96 (137)
T 2qsi_A           18 TLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEAERGLMARFGVAVCPSLAVV   96 (137)
T ss_dssp             EEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGGHHHHHHHHTCCSSSEEEEE
T ss_pred             cccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence            467775555555 444599999999999  9999999999999999987 899999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ++|+.+.+..|..+. +|.++|++++.
T Consensus        97 kdG~~v~~~vG~~~k~~l~~~l~~~l~  123 (137)
T 2qsi_A           97 QPERTLGVIAKIQDWSSYLAQIGAMLA  123 (137)
T ss_dssp             ECCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            999999999998887 79999998873

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.91  E-value=6.7e-24  Score=149.00  Aligned_cols=105  Identities=13%  Similarity=0.233  Sum_probs=96.3

Q ss_pred             CceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          1 MSVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         1 M~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      |++++++.+.+...+ .++++++|.||++||++|+++.|.++++++.+++ ++.|+.+|++++++++++|+|.++||+++
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   82 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEEEKTLFQRFSLKGVPQILY   82 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHTTCCSSCEEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCcChhHHHhcCCCcCCEEEE
Confidence            789999997677766 8899999999999999999999999999999996 79999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         80 LKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |++|+.+.++.|.... +|.++|+++++
T Consensus        83 ~~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           83 FKDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            9999998888887665 89999998864

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.90  E-value=9.3e-24  Score=149.20  Aligned_cols=104  Identities=16%  Similarity=0.367  Sum_probs=95.3

Q ss_pred             CceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         1 M~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |++++++++.+.+.+ ++++++|.||++||++|+++.|.++++++.+++ ++.++.||++++++++++|+|.++||+++|
T Consensus         1 M~v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (112)
T 2voc_A            1 MAIVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETAGKYGVMSIPTLLVL   78 (112)
T ss_dssp             -CCEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTTCCSHHHHTTCCSBSEEEEE
T ss_pred             CCeEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            899999997777777 899999999999999999999999999999986 799999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ++|+.+.++.|..+. +|.+++++++.
T Consensus        79 ~~G~~~~~~~G~~~~~~l~~~l~~~~~  105 (112)
T 2voc_A           79 KDGEVVETSVGFKPKEALQELVNKHLL  105 (112)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHTTSC
T ss_pred             eCCEEEEEEeCCCCHHHHHHHHHHHHH
Confidence            999988888898776 79999998864

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.90  E-value=1.6e-24  Score=158.39  Aligned_cols=103  Identities=13%  Similarity=0.059  Sum_probs=94.3

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCC--CHHHHhHHHHHHHHHHHcCCCc-EEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADW--SDECKHMNTLFDEMSKQSKYSQ-VVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~w--C~~C~~~~~~~~~l~~~~~~~~-v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +.++|++++.+.+.++++++|.|||+|  |++|+.+.|.+++++++|.+ + +.|++||+|++++++.+|+|+++||+++
T Consensus        19 ~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g-~~v~~~KVdvDe~~~lA~~ygV~sIPTlil   97 (140)
T 2qgv_A           19 WTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD-YTWQVAIADLEQSEAIGDRFGAFRFPATLV   97 (140)
T ss_dssp             CEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT-SCCEEEECCHHHHHHHHHHHTCCSSSEEEE
T ss_pred             CccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC-CeEEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence            457788666666678889999999999  99999999999999999987 7 9999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         80 LKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |++|+.+.+..|..+. +|.++|+++++
T Consensus        98 Fk~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           98 FTGGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence            9999999999998886 79999999874

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.90  E-value=2.3e-23  Score=144.97  Aligned_cols=102  Identities=23%  Similarity=0.462  Sum_probs=94.2

Q ss_pred             CceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          1 MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         1 M~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |++++++++.+.+.+ ++++++|.||++||++|+++.|.++++++.+++ ++.++.+|++++++++++|+|+++||+++|
T Consensus         3 ~~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 3die_A            3 MAIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEG-KADILKLDVDENPSTAAKYEVMSIPTLIVF   80 (106)
T ss_dssp             CCCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSBSEEEEE
T ss_pred             cceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CcEEEEEECCcCHHHHHhCCCcccCEEEEE
Confidence            789999997777777 899999999999999999999999999999996 699999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHH
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      ++|+.+.++.|.... +|.++|+++
T Consensus        81 ~~G~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           81 KDGQPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             eCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            999998888887765 799998875

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.90  E-value=5.4e-24  Score=167.95  Aligned_cols=175  Identities=14%  Similarity=0.177  Sum_probs=126.2

Q ss_pred             CceEEeCC-chhhhhh---cCCCeEEEEEEcC-CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCcc
Q psy15246          1 MSVVQISE-ELDVEKY---GKDKTAVVHFYAD-WSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--LPKLSLNYKVSA   73 (213)
Q Consensus         1 M~v~~l~~-~~~~~~~---~~~~~~vV~F~a~-wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~   73 (213)
                      |+++..++ +...+.+   .++..+++.||++ ||++|+++.|.++++++..+  ++.|+.||+++  +++++++|+|++
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~--~v~~~~vd~~~~~~~~~~~~~~v~~   78 (226)
T 1a8l_A            1 MGLISDADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTD--KLSYEIVDFDTPEGKELAKRYRIDR   78 (226)
T ss_dssp             CCSSCHHHHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCT--TEEEEEEETTSHHHHHHHHHTTCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCC--ceEEEEEeCCCcccHHHHHHcCCCc
Confidence            55554444 2333344   3456778999999 99999999999999997643  79999999999  999999999999


Q ss_pred             ccEEEEEeCCCCc-ccccCCCch-hHHHHHHHHhccCCCCCCcccccCCCcccccchhhhhh-hheeccCC--------C
Q psy15246         74 VPTFVILKNLKPV-DRVEGADPE-SLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVRE-GLKIYSNW--------P  142 (213)
Q Consensus        74 ~Pti~~~~~g~~~-~~~~g~~~~-~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~~~~-~v~~~apW--------P  142 (213)
                      +||+++|++|+.. .++.|.... ++.+++...+.. .+.   ...++..+++.+.+..... +|.||+||        |
T Consensus        79 ~Pt~~~~~~g~~~~~~~~G~~~~~~l~~~l~~~l~~-~~~---~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p  154 (226)
T 1a8l_A           79 APATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDV-SRE---ETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVR  154 (226)
T ss_dssp             SSEEEEEETTBCCSEEEESCCCTTHHHHHHHHHHHH-HHT---CCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHH
T ss_pred             CceEEEEcCCceeeEEEeccCcHHHHHHHHHHHHhh-cCC---CCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHH
Confidence            9999999999764 566676554 788888887531 111   1234555565444333334 88999999        4


Q ss_pred             CCCC-----------CCCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeE
Q psy15246        143 TYPQ-----------VVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTEL  183 (213)
Q Consensus       143 ~~~~-----------~v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~  183 (213)
                      .+.+           -+.++.+|++.++++++.+. ..++||+ .+|-+|+.
T Consensus       155 ~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~G~~  204 (226)
T 1a8l_A          155 MAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYN-VMAVPKI-VIQVNGED  204 (226)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTT-CCSSCEE-EEEETTEE
T ss_pred             HHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCC-CcccCeE-EEEeCCce
Confidence            3433           25678899999988877665 6677776 56667753

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.90  E-value=4.8e-23  Score=144.06  Aligned_cols=102  Identities=24%  Similarity=0.342  Sum_probs=91.6

Q ss_pred             ceEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          2 SVVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      +++++++ +.+.+.+  +++++++|.|||+||++|+++.|.++++++.++  ++.|+.+|++++++++++|+|.++||++
T Consensus         2 ~v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 1gh2_A            2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             ceEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--CcEEEEEECccCHHHHHhcCCCcccEEE
Confidence            4677866 5555556  579999999999999999999999999999996  7999999999999999999999999999


Q ss_pred             EEeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         79 ILKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      +|++|+.+.++.|....+|.++|++++
T Consensus        80 ~~~~G~~~~~~~G~~~~~l~~~l~~~l  106 (107)
T 1gh2_A           80 FFRNKVRIDQYQGADAVGLEEKIKQHL  106 (107)
T ss_dssp             EEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEECCeEEEEEeCCCHHHHHHHHHHhc
Confidence            999999998899988778999998875

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.90  E-value=4.1e-23  Score=144.13  Aligned_cols=104  Identities=17%  Similarity=0.414  Sum_probs=94.5

Q ss_pred             CceEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          1 MSVVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         1 M~v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      |+|++++++.+.+. ..++++++|.||++||++|+++.|.++++++.+++ ++.++.+|++.+++++++|+|.++||+++
T Consensus         1 m~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (107)
T 1dby_A            1 MEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESPNVASEYGIRSIPTIMV   79 (107)
T ss_dssp             CCCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHHTCCSSCEEEE
T ss_pred             CccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCCcCCEEEE
Confidence            89999999666654 47789999999999999999999999999999986 79999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         80 LKNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      +++|+.+.++.|..+. +|.++|++++
T Consensus        80 ~~~G~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           80 FKGGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             ESSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            9999988888887765 7999998875

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.89  E-value=7.2e-23  Score=152.68  Aligned_cols=123  Identities=31%  Similarity=0.497  Sum_probs=97.5

Q ss_pred             ceEEeCC-chhhhhhcC--CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          2 SVVQISE-ELDVEKYGK--DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~--~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      .++++++ +.+...+.+  +++++|.||++||++|+++.|.|+++++.++  ++.|+.||++++++++++|+|.++||++
T Consensus        13 ~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   90 (153)
T 2wz9_A           13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPEVSEKYEISSVPTFL   90 (153)
T ss_dssp             CSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             CeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            4678876 555556655  8999999999999999999999999999986  7999999999999999999999999999


Q ss_pred             EEeCCCCcccccCCCchhHHHHHHHHhcc-CCCCCCcccccCCCccccc
Q psy15246         79 ILKNLKPVDRVEGADPESLDKKLQNQAST-MKNQPSNITHVPYDTFDIL  126 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~~~l~~~i~~~~~~-~kg~p~~~~~~~~~~f~~l  126 (213)
                      +|++|+.+.++.|....+|.++|+++++. ....|..+..++..+|+.+
T Consensus        91 ~~~~G~~~~~~~G~~~~~l~~~i~~~l~~~~~~~~~~~~~l~~~~f~~~  139 (153)
T 2wz9_A           91 FFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSAKVKVDTDPNSSSV  139 (153)
T ss_dssp             EEETTEEEEEEESSCHHHHHHHHHHHSCTTSSCSCCCCCCC--------
T ss_pred             EEECCEEEEEEeCCCHHHHHHHHHHHhccccCCCccccccCCCCChhhH
Confidence            99999999889998777899999999864 2222333445556666544

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.89  E-value=2.1e-23  Score=145.61  Aligned_cols=100  Identities=14%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             EEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          4 VQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         4 ~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      .++++ +...+.++++++++|+|||+||++|+++.|.++++++.++  ++.++.||++++++++++|+|.++||+++|++
T Consensus         3 ~~i~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   80 (105)
T 4euy_A            3 NTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYN   80 (105)
T ss_dssp             -------CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECCC---------CCCCEEEEEET
T ss_pred             cccCCHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--CceEEEEECCCCHHHHHhcCCCCCCEEEEEeC
Confidence            45554 4455566889999999999999999999999999999996  79999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHh
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      |+.+.+..|..+. +|.++|++++
T Consensus        81 G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           81 GKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             TEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             CeEEEEEeCCcCHHHHHHHHHHhh
Confidence            9999888887665 7999998764

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.89  E-value=6.1e-23  Score=148.20  Aligned_cols=102  Identities=26%  Similarity=0.414  Sum_probs=93.7

Q ss_pred             eEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      ++++++ +.+.+.++++++++|.|||+||++|+++.|.++++++.++  ++.|+.||++++++++++|+|.++||+++|+
T Consensus        21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~   98 (125)
T 1r26_A           21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQLPTFIIAR   98 (125)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHcCCCcccEEEEEe
Confidence            788998 7777777889999999999999999999999999999996  7999999999999999999999999999999


Q ss_pred             CCCCcccccCCCchhHHHHHHHHhc
Q psy15246         82 NLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        82 ~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      +|+.+.++.|.+.++|.++|+++++
T Consensus        99 ~G~~~~~~~G~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           99 SGKMLGHVIGANPGMLRQKLRDIIK  123 (125)
T ss_dssp             TTEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCHHHHHHHHHHHhc
Confidence            9998888889766689999998864

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.89  E-value=1.2e-22  Score=143.05  Aligned_cols=103  Identities=16%  Similarity=0.405  Sum_probs=92.4

Q ss_pred             eEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      |++++++.+.. +++++++++|.||++||++|+++.|.++++++.+++ ++.++.+|++.+++++++|+|.++||+++++
T Consensus         7 v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   85 (112)
T 1t00_A            7 LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDENPGTAAKYGVMSIPTLNVYQ   85 (112)
T ss_dssp             CEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             EEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCCCHHHHHhCCCCcccEEEEEe
Confidence            78888855544 457789999999999999999999999999999986 7999999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|+.+.++.|..+. +|.++|+++++
T Consensus        86 ~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           86 GGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             TTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             CCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            99988888888765 79999988764

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.89  E-value=1.7e-22  Score=140.52  Aligned_cols=102  Identities=26%  Similarity=0.466  Sum_probs=91.7

Q ss_pred             ceEEeCC-chhhhhhc--CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          2 SVVQISE-ELDVEKYG--KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~--~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      +|+++++ +...+.++  ++++++|.||++||++|+++.|.++++++.+++ ++.++.+|++++++++++|+|.++||++
T Consensus         1 mv~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (106)
T 1xwb_A            1 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDECEDIAMEYNISSMPTFV   79 (106)
T ss_dssp             CEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC-CeEEEEEeccchHHHHHHcCCCcccEEE
Confidence            1788999 66666665  799999999999999999999999999999965 8999999999999999999999999999


Q ss_pred             EEeCCCCcccccCCCchhHHHHHHHH
Q psy15246         79 ILKNLKPVDRVEGADPESLDKKLQNQ  104 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~~~l~~~i~~~  104 (213)
                      ++++|+.+.++.|.+.++|.++|+++
T Consensus        80 ~~~~G~~~~~~~g~~~~~l~~~i~~~  105 (106)
T 1xwb_A           80 FLKNGVKVEEFAGANAKRLEDVIKAN  105 (106)
T ss_dssp             EEETTEEEEEEESCCHHHHHHHHHHT
T ss_pred             EEcCCcEEEEEcCCCHHHHHHHHHHh
Confidence            99999988888897666899988875

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.1e-23  Score=144.26  Aligned_cols=105  Identities=27%  Similarity=0.471  Sum_probs=91.0

Q ss_pred             ceEEeCC-chhhhhhcC---CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          2 SVVQISE-ELDVEKYGK---DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~---~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      +|+++++ +.+.+.+.+   +++++|.|||+||++|+++.|.++++++.+...++.|+.||++++++++++|+|.++||+
T Consensus         1 ~v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            1 PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             CEEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            4788888 666666765   899999999999999999999999999985322799999999999999999999999999


Q ss_pred             EEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         78 VILKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      ++|++|+.+.++.|....+|.++|+++++
T Consensus        81 ~~~~~G~~~~~~~G~~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           81 IIIHKGTILKELSGADPKEYVSLLEDCKN  109 (112)
T ss_dssp             EEEETTEEEEEECSCCHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEecCCCHHHHHHHHHHHHh
Confidence            99999999999999887789999988764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.89  E-value=1.4e-22  Score=140.91  Aligned_cols=103  Identities=19%  Similarity=0.481  Sum_probs=92.7

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      .|++++++.+...+.++++++|.||++||++|+++.|.++++++.+++ ++.++.+|++++++++++|+|.++||+++|+
T Consensus         1 av~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   79 (105)
T 1nsw_A            1 ATMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             CCEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             CceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcCCHHHHHHcCCccccEEEEEe
Confidence            367888876667788899999999999999999999999999999986 6999999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHHHh
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      +|+.+.++.|..+. +|.++|++++
T Consensus        80 ~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           80 GGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             TTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             CCeEEEEEecCCCHHHHHHHHHHHh
Confidence            99988888887765 6888887664

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.89  E-value=3.2e-22  Score=139.76  Aligned_cols=103  Identities=19%  Similarity=0.417  Sum_probs=92.1

Q ss_pred             ceEEeCCchhh-hhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISEELDV-EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~~~~~-~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      .|++++++.+. .+..++++++|.||++||++|+.+.|.++++++.+++ ++.++.+|++++++++++|+|.++||+++|
T Consensus         3 ~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (108)
T 2trx_A            3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             cceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCCCHHHHHHcCCcccCEEEEE
Confidence            36788886555 4457889999999999999999999999999999987 799999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      ++|+.+.++.|..+. +|.++|++.+
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           82 KNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            999988888887665 7999998875

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.89  E-value=2.1e-22  Score=141.75  Aligned_cols=102  Identities=23%  Similarity=0.379  Sum_probs=91.9

Q ss_pred             ceEEeCCchhhhhhc--CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-CchhHHHhCCCccccEEE
Q psy15246          2 SVVQISEELDVEKYG--KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-DLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~--~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-~~~~l~~~~~I~~~Pti~   78 (213)
                      .|++++++.+.+.+.  ++++++|.||++||++|+++.|.++++++.++  ++.|+.||++ .+++++++|+|+++||++
T Consensus         6 ~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~   83 (111)
T 2pu9_C            6 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLAKELGIRVVPTFK   83 (111)
T ss_dssp             SEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSTTHHHHHHHCCSBSSEEE
T ss_pred             ccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCcchHHHHHHcCCCeeeEEE
Confidence            578899876666664  68999999999999999999999999999998  6999999998 789999999999999999


Q ss_pred             EEeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         79 ILKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      ++++|+.+.+..|.+.++|.++|++++
T Consensus        84 ~~~~G~~~~~~~G~~~~~l~~~l~~~~  110 (111)
T 2pu9_C           84 ILKENSVVGEVTGAKYDKLLEAIQAAR  110 (111)
T ss_dssp             EESSSSEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEeCCcEEEEEcCCCHHHHHHHHHHhh
Confidence            999999988889987668999998765

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.89  E-value=1.3e-22  Score=142.65  Aligned_cols=96  Identities=30%  Similarity=0.514  Sum_probs=88.2

Q ss_pred             CchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcc
Q psy15246          8 EELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVD   87 (213)
Q Consensus         8 ~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~   87 (213)
                      .+.+.+.++++++++|.|||+||++|+++.|.++++++.++  ++.|+.||++++++++++|+|.++||+++|++|+.+.
T Consensus        14 ~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~   91 (109)
T 3f3q_A           14 ASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVA   91 (109)
T ss_dssp             HHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             HHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHcCCCccCEEEEEECCEEEE
Confidence            35566677889999999999999999999999999999998  6999999999999999999999999999999999999


Q ss_pred             cccCCCchhHHHHHHHHh
Q psy15246         88 RVEGADPESLDKKLQNQA  105 (213)
Q Consensus        88 ~~~g~~~~~l~~~i~~~~  105 (213)
                      ++.|.+.++|.++|++++
T Consensus        92 ~~~G~~~~~l~~~i~~~l  109 (109)
T 3f3q_A           92 KVVGANPAAIKQAIAANA  109 (109)
T ss_dssp             EEESSCHHHHHHHHHHHC
T ss_pred             EEeCCCHHHHHHHHHhhC
Confidence            999997778999998763

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.88  E-value=1.7e-22  Score=141.01  Aligned_cols=102  Identities=25%  Similarity=0.415  Sum_probs=93.7

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +++++++...+.+.++++++|.||++||++|+++.|.++++++.+++ ++.++.+|++++++++++|+|.++||+++|++
T Consensus         6 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~   84 (109)
T 3tco_A            6 TLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDENQKIADKYSVLNIPTTLIFVN   84 (109)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             EEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccccCHHHHHhcCcccCCEEEEEcC
Confidence            56788877778888899999999999999999999999999999997 79999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHh
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      |+.+.++.|.... +|.++|++++
T Consensus        85 g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           85 GQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             CcEEEeeeccCCHHHHHHHHHHHh
Confidence            9999888887665 7999998875

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.88  E-value=1.5e-22  Score=146.61  Aligned_cols=104  Identities=19%  Similarity=0.380  Sum_probs=92.7

Q ss_pred             Cc--eEEeCCchhh-hhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          1 MS--VVQISEELDV-EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         1 M~--v~~l~~~~~~-~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      |+  +++++.+.+. .+++++++++|.||++||++|+++.|.++++++.+++ ++.|+.||++++++++++|+|.++||+
T Consensus        20 m~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~   98 (128)
T 2o8v_B           20 HSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTL   98 (128)
T ss_dssp             -CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTCCTTSGGGTCCSSSEE
T ss_pred             cccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCccCEE
Confidence            55  7888886555 4457899999999999999999999999999999986 799999999999999999999999999


Q ss_pred             EEEeCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         78 VILKNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      ++|++|+.+.++.|.... +|.++|++.+
T Consensus        99 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           99 LLFKNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            999999988888887665 7999998875

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.88  E-value=3.5e-22  Score=144.14  Aligned_cols=102  Identities=22%  Similarity=0.271  Sum_probs=86.2

Q ss_pred             eEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC----CCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          3 VVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK----YSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         3 v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~----~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      |++++++.+.+.+ .++++++|.|||+||++|+++.|.|+++++.+.    ..++.++.||++++++++++|+|+++||+
T Consensus        17 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   96 (127)
T 3h79_A           17 VVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTM   96 (127)
T ss_dssp             CEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             eEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEE
Confidence            6788886666665 569999999999999999999999999988653    12699999999999999999999999999


Q ss_pred             EEEeCCCCc--ccccCCCch-hHHHHHHHH
Q psy15246         78 VILKNLKPV--DRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        78 ~~~~~g~~~--~~~~g~~~~-~l~~~i~~~  104 (213)
                      ++|++|+..  ..+.|.... +|.+||+++
T Consensus        97 ~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           97 RYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             EEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             EEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            999988654  355665554 799999875

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.88  E-value=2.3e-22  Score=142.94  Aligned_cols=102  Identities=28%  Similarity=0.529  Sum_probs=91.1

Q ss_pred             Cc-eEEeCC-chhhhhhc--CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccE
Q psy15246          1 MS-VVQISE-ELDVEKYG--KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT   76 (213)
Q Consensus         1 M~-v~~l~~-~~~~~~~~--~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pt   76 (213)
                      |+ ++++++ +...+.++  ++++++|.|||+||++|+++.|.++++++.+   ++.++.||++++++++++|+|.++||
T Consensus        12 m~~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt   88 (117)
T 2xc2_A           12 MSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDKLEETARKYNISAMPT   88 (117)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             hheeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCccHHHHHHcCCCccce
Confidence            55 888988 66666665  7999999999999999999999999999887   48999999999999999999999999


Q ss_pred             EEEEeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         77 FVILKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        77 i~~~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      ++++++|+.+.+..|.+.++|.++|++++
T Consensus        89 ~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           89 FIAIKNGEKVGDVVGASIAKVEDMIKKFI  117 (117)
T ss_dssp             EEEEETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             EEEEeCCcEEEEEeCCCHHHHHHHHHHhC
Confidence            99999999988889977668999988763

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.88  E-value=1.2e-22  Score=144.46  Aligned_cols=97  Identities=26%  Similarity=0.434  Sum_probs=87.1

Q ss_pred             CCchhhhhhc--CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCC
Q psy15246          7 SEELDVEKYG--KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLK   84 (213)
Q Consensus         7 ~~~~~~~~~~--~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~   84 (213)
                      +.+.+.+.++  ++++++|+|||+||++|+++.|.++++++.++  ++.|+.||++++++++++|+|.++||+++|++|+
T Consensus        18 t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~   95 (116)
T 3qfa_C           18 SKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQ   95 (116)
T ss_dssp             CHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT--TSEEEEEETTTTHHHHHHTTCCSSSEEEEESSSS
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHcCCccccEEEEEeCCe
Confidence            3355566666  89999999999999999999999999999998  5999999999999999999999999999999999


Q ss_pred             CcccccCCCchhHHHHHHHHh
Q psy15246         85 PVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        85 ~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      .+.++.|.+.++|.++|++++
T Consensus        96 ~~~~~~G~~~~~l~~~l~~~l  116 (116)
T 3qfa_C           96 KVGEFSGANKEKLEATINELV  116 (116)
T ss_dssp             EEEEEESCCHHHHHHHHHHHC
T ss_pred             EEEEEcCCCHHHHHHHHHHhC
Confidence            999999995558999998763

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.88  E-value=3e-22  Score=139.14  Aligned_cols=101  Identities=28%  Similarity=0.467  Sum_probs=89.9

Q ss_pred             eEEeCC-chhhhhhc--CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISE-ELDVEKYG--KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~-~~~~~~~~--~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +.++++ +...+.++  ++++++|.||++||++|+++.|.++++++.++  ++.++.+|++++++++++|+|.++||+++
T Consensus         2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   79 (105)
T 3m9j_A            2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVASESEVKSMPTFQF   79 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST--TSEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhhhhHHHHHHcCCCcCcEEEE
Confidence            466766 55555565  79999999999999999999999999999998  69999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         80 LKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      |++|+.+.++.|.+.++|.++|++++
T Consensus        80 ~~~g~~~~~~~g~~~~~l~~~l~~~l  105 (105)
T 3m9j_A           80 FKKGQKVGEFSGANKEKLEATINELV  105 (105)
T ss_dssp             EETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             EECCeEEEEEeCCCHHHHHHHHHHhC
Confidence            99999999999996568999998763

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.88  E-value=2.3e-22  Score=141.44  Aligned_cols=105  Identities=26%  Similarity=0.414  Sum_probs=93.1

Q ss_pred             CceEEeCC-chhhhhhcC----CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcccc
Q psy15246          1 MSVVQISE-ELDVEKYGK----DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP   75 (213)
Q Consensus         1 M~v~~l~~-~~~~~~~~~----~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~P   75 (213)
                      |.++++++ +.+.+.+..    +++++|.||++||++|+.+.|.++++++.+++ ++.|+.+|++.+++++++|+|.++|
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P   80 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCchHHHHHHcCCCccc
Confidence            46888866 555555644    89999999999999999999999999999987 7999999999999999999999999


Q ss_pred             EEEEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         76 TFVILKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        76 ti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      |++++++|+.+.++.|.+.++|.++|+++++
T Consensus        81 t~~~~~~G~~~~~~~G~~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           81 TFHVYKDGVKADDLVGASQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred             EEEEEECCeEEEEEcCCCHHHHHHHHHHHhc
Confidence            9999999998888889855689999998864

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.88  E-value=6.7e-23  Score=162.18  Aligned_cols=158  Identities=11%  Similarity=0.112  Sum_probs=119.0

Q ss_pred             cCCCeEEEEEE-----cCCCHHHHhHHHHHHHHHHHc--CCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCccc
Q psy15246         16 GKDKTAVVHFY-----ADWSDECKHMNTLFDEMSKQS--KYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDR   88 (213)
Q Consensus        16 ~~~~~~vV~F~-----a~wC~~C~~~~~~~~~l~~~~--~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~   88 (213)
                      ...++++|.||     +|||++|+++.|.|+++++.+  .+ ++.+++||+++++++|++|+|+++||+++|++|+...+
T Consensus        18 ~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~~~~~~~   96 (229)
T 2ywm_A           18 EFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQD-KIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIR   96 (229)
T ss_dssp             HCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTT-TEEEEEECTTTCHHHHHHTTCCBSSEEEEESSSCCCEE
T ss_pred             hccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCC-ceEEEEecCcccHHHHHHcCCCcCcEEEEECCCcccce
Confidence            44566766666     899999999999999998887  54 79999999999999999999999999999998777777


Q ss_pred             ccCCCch-hHHHHHHHHhccCCCCCCcccccCCCcccccchhhhhh-hheeccCC--------CCCCCC------CCceE
Q psy15246         89 VEGADPE-SLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQEVRE-GLKIYSNW--------PTYPQV------VPYDT  152 (213)
Q Consensus        89 ~~g~~~~-~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~~~~-~v~~~apW--------P~~~~~------v~~~~  152 (213)
                      +.|.... ++..++...+.. .+.   ...++..+|+.+.+..... ++.||+||        |.+.++      +.++.
T Consensus        97 ~~G~~~~~~l~~~~~~~~~~-~~~---~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~  172 (229)
T 2ywm_A           97 YIGLPAGLEFTTLINGIFHV-SQR---KPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKV  172 (229)
T ss_dssp             EESCCCTTHHHHHHHHHHHH-HTT---CCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             ecCCccHHHHHHHHHHHHhc-cCC---ccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEE
Confidence            7776554 799999887631 111   2345566676443322233 67899999        333332      67899


Q ss_pred             EeccCCHHHHHHHHhhcCCCcccceEeCCe
Q psy15246        153 FDILQDQEVREGLKIYSNWPTYPQVYVNTE  182 (213)
Q Consensus       153 ~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~  182 (213)
                      +|++.++++++.+.    ...+|+++++|+
T Consensus       173 vd~~~~~~l~~~~~----v~~~Pt~~~~G~  198 (229)
T 2ywm_A          173 IDASENQDLAEQFQ----VVGVPKIVINKG  198 (229)
T ss_dssp             EEGGGCHHHHHHTT----CCSSSEEEEGGG
T ss_pred             EECCCCHHHHHHcC----CcccCEEEECCE
Confidence            99999988877654    345667777987

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.88  E-value=6.4e-22  Score=139.53  Aligned_cols=103  Identities=20%  Similarity=0.355  Sum_probs=92.6

Q ss_pred             eEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +++++++.+... +.++++++|.||++||++|+++.|.++++++.+++ ++.++.+|++.+++++++|+|.++||+++|+
T Consensus         9 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   87 (115)
T 1thx_A            9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPNPTTVKKYKVEGVPALRLVK   87 (115)
T ss_dssp             EEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             eEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCCCHHHHHHcCCCceeEEEEEc
Confidence            788888655554 47899999999999999999999999999999987 6999999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|+.+.++.|.... +|.++|+++++
T Consensus        88 ~G~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           88 GEQILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CCEEEEEecCCCCHHHHHHHHHHHhc
Confidence            99988888887655 79999998864

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.88  E-value=1e-21  Score=143.44  Aligned_cols=105  Identities=26%  Similarity=0.441  Sum_probs=90.9

Q ss_pred             CceEEeCCchhhhhhc------------CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHh
Q psy15246          1 MSVVQISEELDVEKYG------------KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLN   68 (213)
Q Consensus         1 M~v~~l~~~~~~~~~~------------~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~   68 (213)
                      |.+++++++.+.+.+.            ++++++|.||++||++|+++.|.++++++.+++ ++.|+.||++++++++++
T Consensus         9 ~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~   87 (136)
T 2l5l_A            9 GKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEKEQELAGA   87 (136)
T ss_dssp             TSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHH
T ss_pred             CceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCCCHHHHHH
Confidence            4688888866666553            578999999999999999999999999999986 799999999999999999


Q ss_pred             CCCccccEEEEE-eCCCCcccccCCC-chhHHHHHHHHhcc
Q psy15246         69 YKVSAVPTFVIL-KNLKPVDRVEGAD-PESLDKKLQNQAST  107 (213)
Q Consensus        69 ~~I~~~Pti~~~-~~g~~~~~~~g~~-~~~l~~~i~~~~~~  107 (213)
                      |+|.++||+++| ++|+.+ ++.|.. .++|.++|++.+..
T Consensus        88 ~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           88 FGIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             TTCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTS
T ss_pred             cCCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhc
Confidence            999999999999 788877 455544 45899999999864

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.87  E-value=5.6e-22  Score=148.37  Aligned_cols=103  Identities=20%  Similarity=0.394  Sum_probs=93.2

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      ++++++..+.+.+.++++++|+||++||++|+.+.|.|+++++.+++ ++.|+.||++++++++++|+|+++||+++|++
T Consensus        49 ~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  127 (155)
T 2ppt_A           49 VAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQAHPAVAGRHRIQGIPAFILFHK  127 (155)
T ss_dssp             EEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTSTHHHHHTTCCSSSEEEEEET
T ss_pred             CccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCccHHHHHHcCCCcCCEEEEEeC
Confidence            56777766666667899999999999999999999999999999987 79999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHhc
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+.+.++.|.... +|.++|+++++
T Consensus       128 G~~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          128 GRELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHhc
Confidence            9998888887665 79999999874

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.87  E-value=4.1e-22  Score=146.35  Aligned_cols=104  Identities=24%  Similarity=0.314  Sum_probs=94.3

Q ss_pred             ceEEeCCchhh-hhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISEELDV-EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~~~~~-~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      .+++++++.+. .++.++++++|.||++||++|+++.|.|+++++.+++ ++.|+.||++++++++++|+|.++||+++|
T Consensus         7 ~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   85 (140)
T 3hz4_A            7 SIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIATNPWTAEKYGVQGTPTFKFF   85 (140)
T ss_dssp             TEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTTCHHHHHHHTCCEESEEEEE
T ss_pred             ceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCcCHhHHHHCCCCcCCEEEEE
Confidence            37788886555 5678899999999999999999999999999999996 699999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ++|+.+.++.|.... +|.++|++++.
T Consensus        86 ~~G~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           86 CHGRPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             eCCcEEEEEcCCCCHHHHHHHHHHHhc
Confidence            999998888887665 79999998875

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.87  E-value=1.2e-21  Score=136.46  Aligned_cols=102  Identities=23%  Similarity=0.440  Sum_probs=90.9

Q ss_pred             ceEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      .+++++++.+... ..++++++|.||++||++|+.+.|.++++++.+++ ++.++.+|++++++++++|+|.++||+++|
T Consensus         3 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 2i4a_A            3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDDNPETPNAYQVRSIPTLMLV   81 (107)
T ss_dssp             CEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred             ceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCCCHHHHHhcCCCccCEEEEE
Confidence            4678888655544 47899999999999999999999999999999986 799999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHH
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      ++|+.+.++.|.... +|.++|+++
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           82 RDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             eCCEEEEEecCCCCHHHHHHHHHhc
Confidence            999988888887665 799998875

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.87  E-value=8e-22  Score=136.21  Aligned_cols=102  Identities=25%  Similarity=0.521  Sum_probs=92.7

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      |++++.+...+.++++++++|.||++||++|+.+.|.++++++.++  ++.++.+|++.+++++++|+|.++||+++|++
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   78 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP--QVGFGKLNSDENPDIAARYGVMSLPTVIFFKD   78 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSCEEEEEET
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcC--CceEEEEECCCCHHHHHhCCccccCEEEEEEC
Confidence            5678887777777889999999999999999999999999999998  49999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHhc
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+.+.++.|.... +|.++++++++
T Consensus        79 g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           79 GEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             CeEhhhccCCCCHHHHHHHHHHHhc
Confidence            9988888887665 79999998864

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.87  E-value=9.5e-22  Score=145.50  Aligned_cols=103  Identities=27%  Similarity=0.511  Sum_probs=94.6

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +++++.+.+...+.++++++|+||++||++|+++.|.|+++++.+.+ ++.|+.||++++++++++|+|.++||+++|++
T Consensus        40 v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~  118 (148)
T 3p2a_A           40 VINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAEPALSTRFRIRSIPTIMLYRN  118 (148)
T ss_dssp             CEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcCCHHHHHHCCCCccCEEEEEEC
Confidence            67788876777778999999999999999999999999999999986 79999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHhc
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+.+.++.|.... +|.++|+++++
T Consensus       119 G~~~~~~~G~~~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          119 GKMIDMLNGAVPKAPFDNWLDEQLS  143 (148)
T ss_dssp             TEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHHhc
Confidence            9998888887765 79999999875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.87  E-value=7.3e-22  Score=137.70  Aligned_cols=103  Identities=22%  Similarity=0.572  Sum_probs=93.1

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +++++++.+...++++++++|.||++||++|+.+.|.++++++.+++ ++.++.+|++.+++++++|+|.++||+++|++
T Consensus         3 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   81 (109)
T 2yzu_A            3 PIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDENPKTAMRYRVMSIPTVILFKD   81 (109)
T ss_dssp             CEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCCCHhHHHhCCCCcCCEEEEEeC
Confidence            67888866667778899999999999999999999999999999986 79999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHhc
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+.+.++.|.... +|.++|+++++
T Consensus        82 g~~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           82 GQPVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred             CcEeeeEeCCCCHHHHHHHHHHHhh
Confidence            9988888887665 79999988763

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.87  E-value=9.5e-22  Score=141.59  Aligned_cols=102  Identities=25%  Similarity=0.509  Sum_probs=90.3

Q ss_pred             ceEEeCC-chhhhhhc----CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccE
Q psy15246          2 SVVQISE-ELDVEKYG----KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~----~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pt   76 (213)
                      +|+++++ +.+.+.+.    ++++++|.||++||++|+++.|.++++++.++  ++.|+.||++++++++++|+|.++||
T Consensus        17 ~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~~Pt   94 (124)
T 1xfl_A           17 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDELKSVASDWAIQAMPT   94 (124)
T ss_dssp             CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             cEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECccCHHHHHHcCCCccCE
Confidence            4788866 44444443    58999999999999999999999999999998  79999999999999999999999999


Q ss_pred             EEEEeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         77 FVILKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        77 i~~~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      ++++++|+.+.+..|.+.++|.++|++++
T Consensus        95 ~~~~~~G~~~~~~~G~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           95 FMFLKEGKILDKVVGAKKDELQSTIAKHL  123 (124)
T ss_dssp             EEEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred             EEEEECCEEEEEEeCCCHHHHHHHHHHhc
Confidence            99999999998888986668999998875

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.87  E-value=2.4e-22  Score=184.68  Aligned_cols=183  Identities=16%  Similarity=0.243  Sum_probs=140.6

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      |++++.+.....  .+++++|.|||+||++|+++.|.|+++++.+++ ++.|+.||++++++++++|+|+++||++++++
T Consensus       442 v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  518 (780)
T 3apo_A          442 VTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQ  518 (780)
T ss_dssp             EEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             CEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCCCHHHHHHcCCCcCCeEEEEcC
Confidence            667777654444  789999999999999999999999999999987 89999999999999999999999999999998


Q ss_pred             CCCcccccCCCc-hhHHHHHHHHhccCCCCCCcccccCCCcccccc-h--hhhhhhheeccCC--------CCCCCC---
Q psy15246         83 LKPVDRVEGADP-ESLDKKLQNQASTMKNQPSNITHVPYDTFDILQ-D--QEVREGLKIYSNW--------PTYPQV---  147 (213)
Q Consensus        83 g~~~~~~~g~~~-~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~-~--~~~~~~v~~~apW--------P~~~~~---  147 (213)
                      |+. ..+.|... ++|.+|+++.++     | .+..++..+|+.+. +  ....++|.||+||        |.|.++   
T Consensus       519 g~~-~~~~g~~~~~~l~~fi~~~~~-----~-~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~  591 (780)
T 3apo_A          519 SSI-HEYEGHHSAEQILEFIEDLRN-----P-SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMART  591 (780)
T ss_dssp             TEE-EEECSCSCHHHHHHHHHHHHS-----C-SEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             Cce-eeecCcccHHHHHHHHHhhcc-----c-ceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHH
Confidence            876 44556544 489999999975     2 23455667777433 2  2344799999999        555544   


Q ss_pred             ----CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe--------Eee---hHHHHHHHHHcC
Q psy15246        148 ----VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE--------LIG---GLDIIKELQVAN  197 (213)
Q Consensus       148 ----v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~--------~~g---g~d~~~~~~~~~  197 (213)
                          +.|+.+|++.+..+++.+. ..++||+ .+|-.|+        +-|   ..+.+.+..++-
T Consensus       592 ~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pti-~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~  654 (780)
T 3apo_A          592 LTGLINVGSVDCGQYHSFCTQEN-VQRYPEI-RFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGF  654 (780)
T ss_dssp             HTTTSEEEEEETTTTHHHHHHTT-CCSSSEE-EEECCCSSSCCSCEECCCSCCSHHHHHHHHHTT
T ss_pred             hhCCeEEEEEECcchHHHHHHcC-CCCCCeE-EEEcCCCcCccchhhcCCCCCCHHHHHHHHhhh
Confidence                7899999999988877665 5667776 4554442        235   356666666553

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.87  E-value=1.4e-21  Score=136.99  Aligned_cols=101  Identities=23%  Similarity=0.392  Sum_probs=90.1

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      +++++++.+.+.+. +++++|.||++||++|+++.|.++++++.+..  .++.++.+|++++++++++|+|.++||+++|
T Consensus         7 v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   85 (111)
T 3uvt_A            7 VLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLF   85 (111)
T ss_dssp             SEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEE
Confidence            67888877777766 88999999999999999999999999998753  2699999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHH
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      ++|+.+.++.|.... +|.++|+++
T Consensus        86 ~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           86 RGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             ETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             eCCcEEEeccCCcCHHHHHHHHHhc
Confidence            999988888887655 799999875

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.87  E-value=1.2e-21  Score=135.72  Aligned_cols=101  Identities=26%  Similarity=0.482  Sum_probs=90.0

Q ss_pred             eEEeCC-chhhhhhc--CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISE-ELDVEKYG--KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~-~~~~~~~~--~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      |.++++ +...+.++  ++++++|.||++||++|+.+.|.++++++.++  ++.|+.+|++++++++++|+|.++||+++
T Consensus         1 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (104)
T 2vim_A            1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQNEEAAAKYSVTAMPTFVF   78 (104)
T ss_dssp             CEECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CeecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccCCHHHHHHcCCccccEEEE
Confidence            467777 55566665  78999999999999999999999999999998  79999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         80 LKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      +++|+.+.+..|.+.++|.++|++++
T Consensus        79 ~~~g~~~~~~~G~~~~~l~~~l~~~l  104 (104)
T 2vim_A           79 IKDGKEVDRFSGANETKLRETITRHK  104 (104)
T ss_dssp             EETTEEEEEEESSCHHHHHHHHHHHC
T ss_pred             EeCCcEEEEEeCCCHHHHHHHHHhhC
Confidence            99999988889976668999988763

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.87  E-value=1.4e-21  Score=140.06  Aligned_cols=101  Identities=24%  Similarity=0.420  Sum_probs=90.4

Q ss_pred             eEEeCCchhhhhhc--CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-CchhHHHhCCCccccEEEE
Q psy15246          3 VVQISEELDVEKYG--KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-DLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~~~~~~~~~--~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-~~~~l~~~~~I~~~Pti~~   79 (213)
                      +++++++.+.+.+.  ++++++|.||++||++|+++.|.++++++.++  ++.++.+|++ ++++++++|+|+++||+++
T Consensus        20 v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~   97 (124)
T 1faa_A           20 VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLAKELGIRVVPTFKI   97 (124)
T ss_dssp             EEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSTTHHHHHHHCCSSSSEEEE
T ss_pred             eEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCcchHHHHHHcCCCeeeEEEE
Confidence            67888866666654  78999999999999999999999999999998  6999999998 6899999999999999999


Q ss_pred             EeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         80 LKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      +++|+.+.+..|...++|.++|++++
T Consensus        98 ~~~G~~~~~~~G~~~~~l~~~i~~~~  123 (124)
T 1faa_A           98 LKENSVVGEVTGAKYDKLLEAIQAAR  123 (124)
T ss_dssp             EETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred             EeCCcEEEEEcCCCHHHHHHHHHHhh
Confidence            99999998889988668999998764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.86  E-value=1.5e-21  Score=139.31  Aligned_cols=102  Identities=26%  Similarity=0.400  Sum_probs=89.3

Q ss_pred             eEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      ++.++++.+.+ +.+++++++|.||++||++|+++.|.++++++.+.+ ++.++.||++++++++++|+|.++||+++|+
T Consensus        15 ~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~   93 (119)
T 1w4v_A           15 FNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK   93 (119)
T ss_dssp             EECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTTTHHHHHHTTCCSSSEEEEEE
T ss_pred             EEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCHHHHHHcCCCcccEEEEEe
Confidence            45566654444 457889999999999999999999999999999986 7999999999999999999999999999999


Q ss_pred             CCCCcccccCCCc-hhHHHHHHHHh
Q psy15246         82 NLKPVDRVEGADP-ESLDKKLQNQA  105 (213)
Q Consensus        82 ~g~~~~~~~g~~~-~~l~~~i~~~~  105 (213)
                      +|+.+.++.|... ++|.++|++++
T Consensus        94 ~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           94 NGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            9998888888755 47999998875

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.4e-21  Score=141.50  Aligned_cols=104  Identities=18%  Similarity=0.315  Sum_probs=92.2

Q ss_pred             ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC----CCcEEEEEEeCCCchhHHHhCCCccccE
Q psy15246          2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK----YSQVVFARCIAEDLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~----~~~v~~~~vd~~~~~~l~~~~~I~~~Pt   76 (213)
                      .+++++++.+.+.+ .++++++|+||++||++|+++.|.|+++++.++    + ++.|+.||++.+++++++|+|.++||
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt   86 (133)
T 1x5d_A            8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG-KVKLAAVDATVNQVLASRYGIRGFPT   86 (133)
T ss_dssp             SCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTT-SEEEEEEETTTCCHHHHHHTCCSSSE
T ss_pred             cCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCC-cEEEEEEECCCCHHHHHhCCCCeeCe
Confidence            36788886666554 778999999999999999999999999999886    4 79999999999999999999999999


Q ss_pred             EEEEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         77 FVILKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        77 i~~~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +++|++|+.+.++.|.... +|.++|++++.
T Consensus        87 ~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           87 IKIFQKGESPVDYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             EEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence            9999999888888887555 79999999875

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.86  E-value=2.3e-21  Score=134.45  Aligned_cols=102  Identities=21%  Similarity=0.447  Sum_probs=90.4

Q ss_pred             eEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      |.+++++.+... ..++++++|.||++||++|+.+.|.++++++.+++ ++.++.+|++.+++++++|+|.++||+++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRSIPTVLFFK   80 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcchHHHHHhCCCCcccEEEEEe
Confidence            567888655554 46789999999999999999999999999999986 7999999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHHHh
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      +|+.+.+..|..+. ++.++|++++
T Consensus        81 ~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           81 NGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             TTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             CCeEEEEEecCCCHHHHHHHHHhhC
Confidence            99988888887765 7999988763

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.86  E-value=1.2e-21  Score=138.27  Aligned_cols=101  Identities=23%  Similarity=0.475  Sum_probs=90.3

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      ...++.+.+.+.++++++++|.||++||++|+++.|.++++++.++  ++.|+.||++++++++++|+|.++||++++++
T Consensus        11 ~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   88 (112)
T 1syr_A           11 KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEVSEVTEKENITSMPTFKVYKN   88 (112)
T ss_dssp             EEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTTHHHHHHTTCCSSSEEEEEET
T ss_pred             EEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCCCHHHHHHcCCCcccEEEEEEC
Confidence            3455666677777889999999999999999999999999999998  69999999999999999999999999999999


Q ss_pred             CCCcccccCCCchhHHHHHHHHh
Q psy15246         83 LKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        83 g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      |+.+.++.|.+.++|.++|++++
T Consensus        89 G~~~~~~~G~~~~~l~~~l~~~l  111 (112)
T 1syr_A           89 GSSVDTLLGANDSALKQLIEKYA  111 (112)
T ss_dssp             TEEEEEEESCCHHHHHHHHHTTC
T ss_pred             CcEEEEEeCCCHHHHHHHHHHhh
Confidence            99888888985558999998764

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.86  E-value=2.7e-22  Score=168.55  Aligned_cols=181  Identities=11%  Similarity=0.106  Sum_probs=127.6

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHH-------HHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcccc
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTL-------FDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP   75 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~-------~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~P   75 (213)
                      |++++++.+.+.++++++++|.||||||+ |+++.|.       |+++++.+++.++.+++|||++++++|++|+|+++|
T Consensus        13 v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~P   91 (350)
T 1sji_A           13 VVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEG   91 (350)
T ss_dssp             CEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTT
T ss_pred             cEECCHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccc
Confidence            77899877778888899999999999999 9999888       999999987535999999999999999999999999


Q ss_pred             EEEEEeCCCCcccccCCCch-hHHHHHHHHhccCCCCCCcccccC-CCcccccch-hhhhhhheeccCC-----CCCCCC
Q psy15246         76 TFVILKNLKPVDRVEGADPE-SLDKKLQNQASTMKNQPSNITHVP-YDTFDILQD-QEVREGLKIYSNW-----PTYPQV  147 (213)
Q Consensus        76 ti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~~~~kg~p~~~~~~~-~~~f~~l~~-~~~~~~v~~~apW-----P~~~~~  147 (213)
                      |+++|++|+.. .+.|.... +|.+|+++.+.     |. +..++ ...++.+.+ ....++|.||++|     +.|.++
T Consensus        92 t~~~~~~g~~~-~~~G~~~~~~l~~~i~~~~~-----~~-~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~~~~~  164 (350)
T 1sji_A           92 SLYVLKGDRTI-EFDGEFAADVLVEFLLDLIE-----DP-VEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEA  164 (350)
T ss_dssp             EEEEEETTEEE-EECSCCCHHHHHHHHHTTSS-----CS-EEECCSHHHHHHHHHCCSSCEEEEECSCTTSHHHHHHHHH
T ss_pred             eEEEEECCcEE-EecCCCCHHHHHHHHHHhcC-----Cc-ceeccchHHHHHHhccCCCcEEEEEECCCCcHHHHHHHHH
Confidence            99999999844 56665554 89999998864     21 12222 234443322 2223688899987     233222


Q ss_pred             -------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC-----eEeeh---HHHHHHHHHcC
Q psy15246        148 -------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT-----ELIGG---LDIIKELQVAN  197 (213)
Q Consensus       148 -------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g-----~~~gg---~d~~~~~~~~~  197 (213)
                             +.|+.+   .++++++.+. .+ +|++ .+|-.+     .+-|+   .+++.++....
T Consensus       165 A~~~~~~~~f~~~---~~~~~~~~~~-v~-~p~i-~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~  223 (350)
T 1sji_A          165 AEHFQPYIKFFAT---FDKGVAKKLS-LK-MNEV-DFYEPFMDEPIAIPDKPYTEEELVEFVKEH  223 (350)
T ss_dssp             HHHTTTTSEEEEE---CCHHHHHHHT-CC-TTCE-EEECTTCSSCEECSSSSCCHHHHHHHHHHH
T ss_pred             HHhhccCcEEEEE---CCHHHHHHcC-CC-CCcE-EEEeCCCCCceecCCCCCCHHHHHHHHHHc
Confidence                   444443   4566766655 33 5555 344331     13354   56777766653

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.86  E-value=2.1e-22  Score=144.98  Aligned_cols=104  Identities=21%  Similarity=0.433  Sum_probs=86.7

Q ss_pred             Cc--eEEeCCchhh-hhhcCCCeEEEEEEcCCCH--------------HHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch
Q psy15246          1 MS--VVQISEELDV-EKYGKDKTAVVHFYADWSD--------------ECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP   63 (213)
Q Consensus         1 M~--v~~l~~~~~~-~~~~~~~~~vV~F~a~wC~--------------~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~   63 (213)
                      |+  +++++++.+. .+++++++++|.|||+||+              +|+++.|.++++++.+++ ++.++.||+++++
T Consensus         1 m~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~~~   79 (123)
T 1oaz_A            1 MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNP   79 (123)
T ss_dssp             -CCSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTSCT
T ss_pred             CCCccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCCCH
Confidence            66  8899886555 4568899999999999999              999999999999999986 7999999999999


Q ss_pred             hHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         64 KLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        64 ~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      +++++|+|+++||+++|++|+.+.++.|..+. +|.++|++++
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           80 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TTGGGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            99999999999999999999998888887665 7999988765

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=1.7e-21  Score=142.51  Aligned_cols=105  Identities=20%  Similarity=0.348  Sum_probs=92.3

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC--cEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS--QVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~--~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      .+++++.+.+...+.++++++|+||++||++|+++.|.|+++++.+++.  ++.|+.||++++.+++++|+|.++||+++
T Consensus        18 ~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~   97 (140)
T 2dj1_A           18 GVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKI   97 (140)
T ss_dssp             TEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEE
Confidence            3678888777777888999999999999999999999999999988752  39999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCch-hHHHHHHHHhcc
Q psy15246         80 LKNLKPVDRVEGADPE-SLDKKLQNQAST  107 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~-~l~~~i~~~~~~  107 (213)
                      |++|+ +.++.|.... +|.++|+++++.
T Consensus        98 ~~~G~-~~~~~g~~~~~~l~~~l~~~~~~  125 (140)
T 2dj1_A           98 LKKGQ-AVDYDGSRTQEEIVAKVREVSQP  125 (140)
T ss_dssp             EETTE-EEECCSCCCHHHHHHHHHHHHSS
T ss_pred             EECCc-EEEcCCCCCHHHHHHHHHHhcCC
Confidence            99998 6666776555 899999999863

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.86  E-value=1e-21  Score=140.35  Aligned_cols=103  Identities=14%  Similarity=0.268  Sum_probs=90.9

Q ss_pred             eEEeCCchh-hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELD-VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~-~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +++++++.+ ..++.++++++|.||++||++|+++.|.++++++.+++ ++.|+.||++++++++++|+|.++||+++|+
T Consensus         5 v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   83 (122)
T 3aps_A            5 SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQ   83 (122)
T ss_dssp             SEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             hhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcCCHHHHHHcCCCccceEEEEe
Confidence            678888555 44668899999999999999999999999999999987 7999999999999999999999999999998


Q ss_pred             CCCCcccccCC-----CchhHHHHHHHHhc
Q psy15246         82 NLKPVDRVEGA-----DPESLDKKLQNQAS  106 (213)
Q Consensus        82 ~g~~~~~~~g~-----~~~~l~~~i~~~~~  106 (213)
                      +|..+.++.|.     +.++|.++|++.++
T Consensus        84 ~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           84 YERAKKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEGGGTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCCccceeeccccCcCCHHHHHHHHHHHHH
Confidence            77667777775     55589999999875

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.86  E-value=2.2e-21  Score=144.20  Aligned_cols=103  Identities=11%  Similarity=0.152  Sum_probs=88.9

Q ss_pred             eEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +..+.+ +.....+  +++++++|+|||+||++|+++.|.++++++++++ .+.|+.||++++++++++|+|.++||+++
T Consensus         5 l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~   83 (149)
T 3gix_A            5 LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK-MAAIYLVDVDQTAVYTQYFDISYIPSTVF   83 (149)
T ss_dssp             CCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT-TEEEEEEETTTCCHHHHHTTCCSSSEEEE
T ss_pred             eeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCcCHHHHHHcCCCccCeEEE
Confidence            345544 4444444  6799999999999999999999999999999986 69999999999999999999999999999


Q ss_pred             EeCCCCc---------ccccC-CCch-hHHHHHHHHhc
Q psy15246         80 LKNLKPV---------DRVEG-ADPE-SLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~---------~~~~g-~~~~-~l~~~i~~~~~  106 (213)
                      +++|+.+         .+..| ..+. +|.++|+..+.
T Consensus        84 ~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~  121 (149)
T 3gix_A           84 FFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR  121 (149)
T ss_dssp             EETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred             EECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence            9999988         88888 6665 79999988764

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=140.24  Aligned_cols=97  Identities=20%  Similarity=0.307  Sum_probs=81.6

Q ss_pred             ceEEeCCchhhhhh-cCCC--eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          2 SVVQISEELDVEKY-GKDK--TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~~~~~~~~-~~~~--~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      .+++++++.+.+.+ ++++  +++|+|||+||++|+.+.|.+++++++++  ++.|++||+++.   +++|+|+++||++
T Consensus         4 ~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~~---~~~~~v~~~PT~~   78 (118)
T 3evi_A            4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNSC---IQHYHDNCLPTIF   78 (118)
T ss_dssp             SCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGGT---STTCCGGGCSEEE
T ss_pred             ceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHHh---HHHCCCCCCCEEE
Confidence            47888886555544 4444  99999999999999999999999999998  799999999986   5899999999999


Q ss_pred             EEeCCCCcccccCCCc--------hhHHHHHHH
Q psy15246         79 ILKNLKPVDRVEGADP--------ESLDKKLQN  103 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~--------~~l~~~i~~  103 (213)
                      +|++|+.+.+..|...        ++|+.+|.+
T Consensus        79 ~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           79 VYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             EEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             EEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            9999999998888653        356666654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.86  E-value=2.6e-21  Score=141.72  Aligned_cols=104  Identities=22%  Similarity=0.425  Sum_probs=88.9

Q ss_pred             CceEEeCCchhhhhhc------------CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHh
Q psy15246          1 MSVVQISEELDVEKYG------------KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLN   68 (213)
Q Consensus         1 M~v~~l~~~~~~~~~~------------~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~   68 (213)
                      |.+++++.+.+...+.            ++++++|+||++||++|+++.|.++++++.+++ ++.++.||++++++++++
T Consensus        22 ~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~  100 (141)
T 3hxs_A           22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKEPELARD  100 (141)
T ss_dssp             -CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHH
T ss_pred             CCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCCCHHHHHH
Confidence            3577888866655553            489999999999999999999999999999997 799999999999999999


Q ss_pred             CCCccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         69 YKVSAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        69 ~~I~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+|.++||+++|+ +|+.+ ++.|.... +|.++|++++.
T Consensus       101 ~~v~~~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A          101 FGIQSIPTIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             TTCCSSSEEEEECSSSCCE-EEESCCCHHHHHHHHHHTTC
T ss_pred             cCCCCcCEEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHc
Confidence            9999999999995 56655 66776554 89999998864

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.86  E-value=8.3e-22  Score=139.85  Aligned_cols=99  Identities=24%  Similarity=0.547  Sum_probs=87.7

Q ss_pred             eEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +.++++ ++..+.++++++++|.||++||++|+++.|.+++++++++  ++.|+.||++++++++++|+|.++||+++++
T Consensus        14 ~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   91 (114)
T 2oe3_A           14 ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP--DVRFVKCDVDESPDIAKECEVTAMPTFVLGK   91 (114)
T ss_dssp             SCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSBSEEEEEE
T ss_pred             eeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHCCCCcccEEEEEe
Confidence            455666 5555667889999999999999999999999999999998  5999999999999999999999999999999


Q ss_pred             CCCCcccccCCCchhHHHHHHH
Q psy15246         82 NLKPVDRVEGADPESLDKKLQN  103 (213)
Q Consensus        82 ~g~~~~~~~g~~~~~l~~~i~~  103 (213)
                      +|+.+.++.|...++|.++|++
T Consensus        92 ~G~~~~~~~G~~~~~l~~~l~~  113 (114)
T 2oe3_A           92 DGQLIGKIIGANPTALEKGIKD  113 (114)
T ss_dssp             TTEEEEEEESSCHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCHHHHHHHHHh
Confidence            9999888889884478888764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.86  E-value=1e-21  Score=180.53  Aligned_cols=185  Identities=16%  Similarity=0.219  Sum_probs=138.8

Q ss_pred             ceEEeCCchhhhhhcC---CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          2 SVVQISEELDVEKYGK---DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~---~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      +|.+++.+...+.+..   +..++|.||+|||++|+++.|.|+++++.+++ ++.|+.+||+.+..+|++|+|+++||++
T Consensus       544 ~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pti~  622 (780)
T 3apo_A          544 SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG-LINVGSVDCGQYHSFCTQENVQRYPEIR  622 (780)
T ss_dssp             SEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             ceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC-CeEEEEEECcchHHHHHHcCCCCCCeEE
Confidence            3677877655555533   57899999999999999999999999999997 8999999999999999999999999999


Q ss_pred             EEeCCCC----cccccC-C-CchhHHHHHHHHhccCCCCCCcccccCCCccc-ccchhhhhhhheeccCC--------CC
Q psy15246         79 ILKNLKP----VDRVEG-A-DPESLDKKLQNQASTMKNQPSNITHVPYDTFD-ILQDQEVREGLKIYSNW--------PT  143 (213)
Q Consensus        79 ~~~~g~~----~~~~~g-~-~~~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~  143 (213)
                      +|+.|..    ...+.| . +.++|.+||.+.+      +..+..++..+|+ .+.+.....+|.||+||        |.
T Consensus       623 ~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~------~~~v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~  696 (780)
T 3apo_A          623 FYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFL------PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPE  696 (780)
T ss_dssp             EECCCSSSCCSCEECCCSCCSHHHHHHHHHTTS------CCCSEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHH
T ss_pred             EEcCCCcCccchhhcCCCCCCHHHHHHHHhhhc------ccccccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHH
Confidence            9987743    233455 3 4458999999885      2234556677775 34444455889999999        44


Q ss_pred             CCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe----Eee------hHHHHHHHHH
Q psy15246        144 YPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE----LIG------GLDIIKELQV  195 (213)
Q Consensus       144 ~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~----~~g------g~d~~~~~~~  195 (213)
                      +.++       +.|+.+|++.++++++.+. ..++||+ .+|-+|+    ++|      ..+.+.++.+
T Consensus       697 ~~~la~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~~~~~G~~~g~~~~~~l~~~l~  763 (780)
T 3apo_A          697 FELLARMIKGKVRAGKVDCQAYPQTCQKAG-IKAYPSV-KLYQYERAKKSIWEEQINSRDAKTIAALIY  763 (780)
T ss_dssp             HHHHHHHHTTTCEEEEEETTTCHHHHHHTT-CCSSSEE-EEEEEETTTTEEEEEEECCCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCceEEEEECCCCHHHHHhcC-CCcCCEE-EEEcCCCccccccCcccCCcCHHHHHHHHH
Confidence            4444       6789999999988877765 5666666 3455664    566      3455555443

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.86  E-value=2.2e-21  Score=137.44  Aligned_cols=104  Identities=22%  Similarity=0.435  Sum_probs=91.9

Q ss_pred             CceEEeCC-chhhhhhc----CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcccc
Q psy15246          1 MSVVQISE-ELDVEKYG----KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP   75 (213)
Q Consensus         1 M~v~~l~~-~~~~~~~~----~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~P   75 (213)
                      +.++++++ +...+.+.    ++++++|.||++||++|+++.|.++++++.++  ++.|+.+|++++++++++|+|.++|
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~P   83 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDELKDVAEAYNVEAMP   83 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSBS
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEcccCHHHHHHcCCCcCc
Confidence            35788876 44444553    38999999999999999999999999999998  7999999999999999999999999


Q ss_pred             EEEEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         76 TFVILKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        76 ti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      |++++++|+.+.+..|.+.++|.++|+++++
T Consensus        84 t~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           84 TFLFIKDGEKVDSVVGGRKDDIHTKIVALMG  114 (118)
T ss_dssp             EEEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred             EEEEEeCCeEEEEecCCCHHHHHHHHHHHhc
Confidence            9999999999888899776789999999874

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.86  E-value=1.8e-21  Score=136.87  Aligned_cols=104  Identities=30%  Similarity=0.516  Sum_probs=91.9

Q ss_pred             CceEEeCC-chhhhhhc----CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcccc
Q psy15246          1 MSVVQISE-ELDVEKYG----KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP   75 (213)
Q Consensus         1 M~v~~l~~-~~~~~~~~----~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~P   75 (213)
                      ++++++++ +.+.+.+.    ++++++|.||++||++|+.+.|.++++++.++  ++.|+.+|++++++++++|+|.++|
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~P   81 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDELKAVAEEWNVEAMP   81 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTCHHHHHHHHCSSTT
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccccHHHHHhCCCCccc
Confidence            46788866 44444553    48999999999999999999999999999998  7999999999999999999999999


Q ss_pred             EEEEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         76 TFVILKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        76 ti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      |++++++|+.+.+..|.+.++|.++|+++++
T Consensus        82 t~~~~~~G~~~~~~~g~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           82 TFIFLKDGKLVDKTVGADKDGLPTLVAKHAT  112 (113)
T ss_dssp             EEEEEETTEEEEEEECCCTTHHHHHHHHHHH
T ss_pred             EEEEEeCCEEEEEEecCCHHHHHHHHHHhhc
Confidence            9999999999888889777789999998763

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.86  E-value=1.5e-21  Score=138.99  Aligned_cols=102  Identities=22%  Similarity=0.508  Sum_probs=90.8

Q ss_pred             eEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +++++++.+.. ++.++++++|.||++||++|+++.|.++++++.+++ ++.|+.||++++++++++|+|.++||+++|+
T Consensus        14 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~   92 (121)
T 2i1u_A           14 TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDTNPETARNFQVVSIPTLILFK   92 (121)
T ss_dssp             SEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             ceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHhcCCCcCCEEEEEE
Confidence            67788855554 457789999999999999999999999999999986 7999999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHHHh
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      +|+.+.++.|.... +|.++|++++
T Consensus        93 ~g~~~~~~~G~~~~~~l~~~l~~~l  117 (121)
T 2i1u_A           93 DGQPVKRIVGAKGKAALLRELSDVV  117 (121)
T ss_dssp             TTEEEEEEESCCCHHHHHHHTCSCC
T ss_pred             CCEEEEEecCCCCHHHHHHHHHHHH
Confidence            99988888888765 6888887765

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=3.1e-21  Score=139.31  Aligned_cols=103  Identities=18%  Similarity=0.274  Sum_probs=90.3

Q ss_pred             eEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +++++.+.+.. +..++++++|.||++||++|+++.|.++++++.+++ .+.|+.||++++.+++++|+|+++||+++|+
T Consensus        19 v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   97 (130)
T 2dml_A           19 VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD-VVKVGAVNADKHQSLGGQYGVQGFPTIKIFG   97 (130)
T ss_dssp             SEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHHTCCSSSEEEEES
T ss_pred             cEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHcCCCccCEEEEEe
Confidence            67888865555 457789999999999999999999999999999986 6999999999999999999999999999999


Q ss_pred             CCCC-cccccCCCch-hHHHHHHHHhc
Q psy15246         82 NLKP-VDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        82 ~g~~-~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|+. +.++.|.... +|.+++.+.+.
T Consensus        98 ~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           98 ANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             SCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence            8765 6777786665 79999988864

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.86  E-value=2.9e-21  Score=137.77  Aligned_cols=101  Identities=20%  Similarity=0.442  Sum_probs=90.3

Q ss_pred             eEEeC-C-chhh-hhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQIS-E-ELDV-EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~-~-~~~~-~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +++++ + .... .+.+++++++|.||++||++|+.+.|.++++++.++  ++.|+.||++++++++++|+|.++||+++
T Consensus         5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~   82 (118)
T 2f51_A            5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANK--DVTFIKVDVDKNGNAADAYGVSSIPALFF   82 (118)
T ss_dssp             SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CeEEEEEECCCCHHHHHhcCCCCCCEEEE
Confidence            77886 3 3333 344678999999999999999999999999999994  89999999999999999999999999999


Q ss_pred             EeC----CCCcccccCCCchhHHHHHHHHh
Q psy15246         80 LKN----LKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        80 ~~~----g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      |++    |+.+.+..|..+.+|++.++++.
T Consensus        83 ~~~~~~~G~~~~~~~G~~~~~l~~~~~~~~  112 (118)
T 2f51_A           83 VKKEGNEIKTLDQFVGADVSRIKADIEKFK  112 (118)
T ss_dssp             EEEETTEEEEEEEEESCCHHHHHHHHHHHC
T ss_pred             EeCCCCcceEEEeecCCCHHHHHHHHHHhh
Confidence            998    99999999999989999998874

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=4.9e-21  Score=137.73  Aligned_cols=101  Identities=20%  Similarity=0.329  Sum_probs=87.1

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +++++++.+.+.+..  .++|+|||+||++|+++.|.++++++.+++.++.|+.||++++.+++++|+|.++||+++|++
T Consensus         9 v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   86 (126)
T 1x5e_A            9 VRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKD   86 (126)
T ss_dssp             EEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             cEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEEeC
Confidence            678888666666543  499999999999999999999999998874369999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHhc
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+ +.++.|.... +|.++|++.+.
T Consensus        87 G~-~~~~~G~~~~~~l~~~l~~~~~  110 (126)
T 1x5e_A           87 GE-FRRYQGPRTKKDFINFISDKEW  110 (126)
T ss_dssp             TE-EEECCSCCCHHHHHHHHHTCGG
T ss_pred             Ce-EEEeecCCCHHHHHHHHHHHhh
Confidence            98 4667776555 79999998864

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.85  E-value=5.1e-21  Score=136.68  Aligned_cols=102  Identities=29%  Similarity=0.482  Sum_probs=88.3

Q ss_pred             eEEe-CCchhhhhhc----CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          3 VVQI-SEELDVEKYG----KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         3 v~~l-~~~~~~~~~~----~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      ++.+ +.+.+...+.    .+++++|.||++||++|+++.|.|+++++.++  ++.|+.||++++++++++|+|.++||+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~   91 (122)
T 2vlu_A           14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP--NAVFLKVDVDELKPIAEQFSVEAMPTF   91 (122)
T ss_dssp             CEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECCCCHHHHHHcCCCcccEE
Confidence            4444 4444444443    68999999999999999999999999999998  599999999999999999999999999


Q ss_pred             EEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         78 VILKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      +++++|+.+.++.|...++|.++|+++++
T Consensus        92 ~~~~~G~~~~~~~G~~~~~l~~~l~~~l~  120 (122)
T 2vlu_A           92 LFMKEGDVKDRVVGAIKEELTAKVGLHAA  120 (122)
T ss_dssp             EEEETTEEEEEEESSCHHHHHHHHHHHHS
T ss_pred             EEEeCCEEEEEEeCcCHHHHHHHHHHHhc
Confidence            99999998888889884489999998864

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.85  E-value=2.4e-21  Score=139.93  Aligned_cols=93  Identities=19%  Similarity=0.321  Sum_probs=83.6

Q ss_pred             hhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccc
Q psy15246         10 LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRV   89 (213)
Q Consensus        10 ~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~   89 (213)
                      .......++++++|.|||+||++|+++.|.++++++.+++ ++.++.||++++++++++|+|.++||+++|++|+.+.++
T Consensus        34 ~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~  112 (128)
T 3ul3_B           34 IINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARK  112 (128)
T ss_dssp             SSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             HHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEEe
Confidence            3444457899999999999999999999999999999986 899999999999999999999999999999999999888


Q ss_pred             cCCCch-hHHHHHHH
Q psy15246         90 EGADPE-SLDKKLQN  103 (213)
Q Consensus        90 ~g~~~~-~l~~~i~~  103 (213)
                      .|.... +|.++|++
T Consensus       113 ~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          113 DHFVSSNDLIALIKK  127 (128)
T ss_dssp             SSCCCHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHh
Confidence            886665 78888765

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.85  E-value=1.6e-21  Score=164.94  Aligned_cols=185  Identities=9%  Similarity=0.116  Sum_probs=127.6

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHH------HHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMN------TLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT   76 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~------~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pt   76 (213)
                      |+++|.+++.+.++++++++|.||||||+||+...      |.|+++++.+.+.++.|++|||++++++|++|+|+++||
T Consensus        15 v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PT   94 (367)
T 3us3_A           15 VINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDS   94 (367)
T ss_dssp             CEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTE
T ss_pred             cEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCce
Confidence            78899987888888899999999999999974333      689999999886469999999999999999999999999


Q ss_pred             EEEEeCCCCcccccCCCchhHHHHHHHHhccCCCCCCccccc-CCCcccccch-hhhhhhheeccCC-----CCCCCC--
Q psy15246         77 FVILKNLKPVDRVEGADPESLDKKLQNQASTMKNQPSNITHV-PYDTFDILQD-QEVREGLKIYSNW-----PTYPQV--  147 (213)
Q Consensus        77 i~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~~kg~p~~~~~~-~~~~f~~l~~-~~~~~~v~~~apW-----P~~~~~--  147 (213)
                      +++|++|+.+.+.++.+.+.|.+||.+.++.     . +..+ +...++.+.+ ....++|.||++|     +.|.++  
T Consensus        95 l~~f~~G~~~~y~G~~~~~~i~~~i~~~~~~-----~-v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~A~  168 (367)
T 3us3_A           95 IYVFKEDEVIEYDGEFSADTLVEFLLDVLED-----P-VELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAE  168 (367)
T ss_dssp             EEEEETTEEEECCSCCSHHHHHHHHHHHHSC-----S-EEECCSHHHHHHHHHCCSSCEEEEECSCTTCHHHHHHHHHHH
T ss_pred             EEEEECCcEEEeCCCCCHHHHHHHHHHhcCC-----C-cEEcCCHHHHHHHhccCCCcEEEEEECCCCchHHHHHHHHHH
Confidence            9999999876444344445899999998741     1 1222 2344553333 3334788899988     334333  


Q ss_pred             -----CCceEEeccCCHHHHHHHHhhcCCCcccceEeC--C---eEeeh---HHHHHHHHHcCCc
Q psy15246        148 -----VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN--T---ELIGG---LDIIKELQVANKL  199 (213)
Q Consensus       148 -----v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~--g---~~~gg---~d~~~~~~~~~~l  199 (213)
                           +.|+.+   .+.++++.+. .+ .|++ .+|-.  +   .+-|+   .+.+.++.....+
T Consensus       169 ~~~~~~~F~~~---~~~~~~~~~~-v~-~p~i-~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~  227 (367)
T 3us3_A          169 EFHPYIPFFAT---FDSKVAKKLT-LK-LNEI-DFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRR  227 (367)
T ss_dssp             HHTTTSCEEEE---CCHHHHHHHT-CC-TTCE-EEECTTCSSCEECSSSSCCHHHHHHHHHHTCS
T ss_pred             hhcCCcEEEEE---CCHHHHHHcC-CC-CCeE-EEEcCCCCCCeecCCCCCCHHHHHHHHHHcCc
Confidence                 455544   3456655544 22 2554 33433  1   13343   4667776666543

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.85  E-value=4.8e-21  Score=140.04  Aligned_cols=103  Identities=24%  Similarity=0.421  Sum_probs=90.7

Q ss_pred             ceEEeCC-chhhhhh----cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccE
Q psy15246          2 SVVQISE-ELDVEKY----GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~----~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pt   76 (213)
                      .++++++ +.+.+.+    .++++++|.||++||++|+.+.|.++++++.++  ++.|+.||++++++++++|+|.++||
T Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt  102 (139)
T 3d22_A           25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDELSDFSASWEIKATPT  102 (139)
T ss_dssp             TCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCEESE
T ss_pred             cEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcccHHHHHHcCCCcccE
Confidence            4677765 4444444    358999999999999999999999999999997  79999999999999999999999999


Q ss_pred             EEEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         77 FVILKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        77 i~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      ++++++|+.+.++.|.+.++|.++|+++++
T Consensus       103 ~~~~~~G~~~~~~~G~~~~~l~~~l~~~~~  132 (139)
T 3d22_A          103 FFFLRDGQQVDKLVGANKPELHKKITAILD  132 (139)
T ss_dssp             EEEEETTEEEEEEESCCHHHHHHHHHHHHH
T ss_pred             EEEEcCCeEEEEEeCCCHHHHHHHHHHHhc
Confidence            999999999988899866689999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.85  E-value=3.6e-21  Score=157.12  Aligned_cols=102  Identities=20%  Similarity=0.394  Sum_probs=93.0

Q ss_pred             eEEeCCchhhhhhc--CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKYG--KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~--~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |+++|++.+.+++.  .+++++|+|||+||++|+.+.|.|+++++++++ ++.|++||++++++++++|+|+++||+++|
T Consensus         9 v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   87 (287)
T 3qou_A            9 IVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAEQMIAAQFGLRAIPTVYLF   87 (287)
T ss_dssp             EEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTCHHHHHTTTCCSSSEEEEE
T ss_pred             cEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccCHHHHHHcCCCCCCeEEEE
Confidence            78899876777774  389999999999999999999999999999996 799999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      ++|+.+.++.|..+. .+.+++...+
T Consensus        88 ~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           88 QNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             ECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            999999888897776 7999998875

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.85  E-value=2.1e-21  Score=137.60  Aligned_cols=105  Identities=20%  Similarity=0.340  Sum_probs=92.3

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      .+++++.+.+.+.+.++++++|.||++||++|+++.|.++++++.+++  .++.++.+|++++++++++|+|+++||+++
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~   87 (120)
T 1mek_A            8 HVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKF   87 (120)
T ss_dssp             TEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEE
T ss_pred             CcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEE
Confidence            367888877777788899999999999999999999999999999873  269999999999999999999999999999


Q ss_pred             EeCCCCc--ccccCCCch-hHHHHHHHHhc
Q psy15246         80 LKNLKPV--DRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~--~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |++|+.+  .++.|.... +|.++|+++++
T Consensus        88 ~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           88 FRNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             EESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             EeCCCcCCcccccCccCHHHHHHHHHhccC
Confidence            9999876  677776554 79999998764

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.85  E-value=9.9e-21  Score=138.69  Aligned_cols=103  Identities=23%  Similarity=0.486  Sum_probs=81.5

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +++++.+.+...+..++.++|+||++||++|+.+.|.|+++++.+++ ++.|+.||++++++++++|+|.++||+++|++
T Consensus        35 v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~  113 (140)
T 1v98_A           35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG-RLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR  113 (140)
T ss_dssp             --------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             cccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHCCCCccCEEEEEeC
Confidence            56677755555554444499999999999999999999999999987 79999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHhc
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+.+.++.|.... +|.++|+++++
T Consensus       114 G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          114 GAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             CcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            9988888887765 79999998874

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.85  E-value=5e-20  Score=147.23  Aligned_cols=106  Identities=16%  Similarity=0.342  Sum_probs=89.7

Q ss_pred             ceEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeC--CCchhHHHhCCCccccE
Q psy15246          2 SVVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIA--EDLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~--~~~~~l~~~~~I~~~Pt   76 (213)
                      +|.+++++.+... ..++++++|+|||+||++|+++.|.|+++++.+++  ..+.|+.|||  +++.++|++|+|.++||
T Consensus        13 ~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt   92 (244)
T 3q6o_A           13 PLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT   92 (244)
T ss_dssp             SSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSE
T ss_pred             CceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCE
Confidence            3678888655554 46779999999999999999999999999999974  3699999999  67999999999999999


Q ss_pred             EEEEeCCCCcc-----cccCCCchhHHHHHHHHhcc
Q psy15246         77 FVILKNLKPVD-----RVEGADPESLDKKLQNQAST  107 (213)
Q Consensus        77 i~~~~~g~~~~-----~~~g~~~~~l~~~i~~~~~~  107 (213)
                      +++|++|+...     ++.|.+.++|.++|.+.+..
T Consensus        93 ~~~~~~g~~~~~g~~~~~~g~~~~~l~~~i~~~l~~  128 (244)
T 3q6o_A           93 VRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALES  128 (244)
T ss_dssp             EEEECTTCCSSSCEECCCTTCCHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCcCCCCeeEecCCCCHHHHHHHHHHHHHh
Confidence            99999864432     66777666899999998865

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.85  E-value=4.1e-21  Score=163.23  Aligned_cols=132  Identities=25%  Similarity=0.414  Sum_probs=98.8

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC-----CCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK-----YSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~-----~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      |++++++.+...++++++++|.|||+||++|+++.|.|+++++.++     ..++.++.|||+++.++|++|+|+++||+
T Consensus         7 v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~   86 (382)
T 2r2j_A            7 ITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTL   86 (382)
T ss_dssp             -CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEE
T ss_pred             eEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEE
Confidence            6778887777778889999999999999999999999999999884     12599999999999999999999999999


Q ss_pred             EEEeCCCCccc-ccCCCch-hHHHHHHHHhccCCCCCCcccccC-CCcccccchhhhhhhheeccCC
Q psy15246         78 VILKNLKPVDR-VEGADPE-SLDKKLQNQASTMKNQPSNITHVP-YDTFDILQDQEVREGLKIYSNW  141 (213)
Q Consensus        78 ~~~~~g~~~~~-~~g~~~~-~l~~~i~~~~~~~kg~p~~~~~~~-~~~f~~l~~~~~~~~v~~~apW  141 (213)
                      ++|++|+.+.+ +.|.... +|.+|+.+.++.    +  +..++ ...++.+.. ...++|.||+++
T Consensus        87 ~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~----~--v~~l~~~~~l~~l~~-~~~~~v~ff~~~  146 (382)
T 2r2j_A           87 KLFRNGMMMKREYRGQRSVKALADYIRQQKSD----P--IQEIRDLAEITTLDR-SKRNIIGYFEQK  146 (382)
T ss_dssp             EEEETTEEEEEECCSCCSHHHHHHHHHHHHSC----C--CEEC-------------CCEEEEEESCS
T ss_pred             EEEeCCcEeeeeecCcchHHHHHHHHHHhccC----C--ceecCCHHHHHHhcC-CCCEEEEEECCC
Confidence            99999987763 6676555 899999999752    1  11111 223333322 233677777765

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.84  E-value=3.5e-21  Score=137.84  Aligned_cols=103  Identities=29%  Similarity=0.535  Sum_probs=91.4

Q ss_pred             eEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +..+++ +.+.+.++++++++|.||++||++|+.+.|.++++++.+++.++.++.||++++++++++|+|.++||+++|+
T Consensus        17 ~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~   96 (121)
T 2j23_A           17 VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFK   96 (121)
T ss_dssp             EEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEEEE
T ss_pred             eEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEEEE
Confidence            567877 5556667889999999999999999999999999999888423999999999999999999999999999999


Q ss_pred             CCCCcccccCCCchhHHHHHHHHh
Q psy15246         82 NLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        82 ~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      +|+.+.++.|.+.++|.++|++++
T Consensus        97 ~G~~~~~~~G~~~~~l~~~l~~~l  120 (121)
T 2j23_A           97 NGQKIDTVVGADPSKLQAAITQHS  120 (121)
T ss_dssp             TTEEEEEEESSCHHHHHHHHHHHT
T ss_pred             CCeEEeeEcCCCHHHHHHHHHHhh
Confidence            999988888985558999998875

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.84  E-value=3.9e-21  Score=135.36  Aligned_cols=97  Identities=21%  Similarity=0.303  Sum_probs=85.7

Q ss_pred             eCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCC
Q psy15246          6 ISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKP   85 (213)
Q Consensus         6 l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~   85 (213)
                      ++.+.+ +.+.++++++|.||++||++|+++.|.++++++.++  ++.|+.+|++.+++++++|+|.++||+++|++|+.
T Consensus         8 ~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~   84 (110)
T 2l6c_A            8 TTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEARPELMKELGFERVPTLVFIRDGKV   84 (110)
T ss_dssp             GGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSE
T ss_pred             CCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEE
Confidence            344444 667788999999999999999999999999999987  79999999999999999999999999999999999


Q ss_pred             cccccCCCc-hhHHHHHHHHh
Q psy15246         86 VDRVEGADP-ESLDKKLQNQA  105 (213)
Q Consensus        86 ~~~~~g~~~-~~l~~~i~~~~  105 (213)
                      +.++.|... ++|.++++...
T Consensus        85 v~~~~G~~~~~~l~~~~~~~~  105 (110)
T 2l6c_A           85 AKVFSGIMNPRELQALYASIH  105 (110)
T ss_dssp             EEEEESCCCHHHHHHHHHTC-
T ss_pred             EEEEcCCCCHHHHHHHHHHHh
Confidence            999999655 47999988775

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.84  E-value=1.9e-20  Score=142.44  Aligned_cols=103  Identities=11%  Similarity=0.163  Sum_probs=87.3

Q ss_pred             eEEeCCchhhhhhc--CCCeEEEEEEc-------CCCHHHHhHHHHHHHHHHHcC-----CCcEEEEEEeCCCchhHHHh
Q psy15246          3 VVQISEELDVEKYG--KDKTAVVHFYA-------DWSDECKHMNTLFDEMSKQSK-----YSQVVFARCIAEDLPKLSLN   68 (213)
Q Consensus         3 v~~l~~~~~~~~~~--~~~~~vV~F~a-------~wC~~C~~~~~~~~~l~~~~~-----~~~v~~~~vd~~~~~~l~~~   68 (213)
                      |+++|++.+.+.+.  .+.+++|.|||       +||++|+.+.|.|+++++++.     + ++.|++||++++++++++
T Consensus        20 vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~-~v~f~kvD~d~~~~la~~   98 (178)
T 3ga4_A           20 VITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQS-LNLFFTVDVNEVPQLVKD   98 (178)
T ss_dssp             EEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTC-CEEEEEEETTTCHHHHHH
T ss_pred             CEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCC-CEEEEEEECccCHHHHHH
Confidence            78999977777664  35689999999       499999999999999999886     5 899999999999999999


Q ss_pred             CCCccccEEEEEeCCCCcc------------cc----c-CCCchhHHHHHHHHhc
Q psy15246         69 YKVSAVPTFVILKNLKPVD------------RV----E-GADPESLDKKLQNQAS  106 (213)
Q Consensus        69 ~~I~~~Pti~~~~~g~~~~------------~~----~-g~~~~~l~~~i~~~~~  106 (213)
                      |+|+++||+++|++|....            .+    . |.+.+.|.+||.+.++
T Consensus        99 ~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~  153 (178)
T 3ga4_A           99 LKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILN  153 (178)
T ss_dssp             TTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHT
T ss_pred             cCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcC
Confidence            9999999999999885332            11    2 5666689999998875

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.84  E-value=1.2e-20  Score=139.02  Aligned_cols=103  Identities=14%  Similarity=0.225  Sum_probs=84.2

Q ss_pred             eEEeCC-chhhh-hhc-CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISE-ELDVE-KYG-KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~-~~~~~-~~~-~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +.++++ +.+.. +.+ ++++++|+|||+||++|+.+.|.++++++++++ ++.|+.||++++++++++|+|+++||+++
T Consensus         5 l~~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~   83 (142)
T 1qgv_A            5 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEVPDFNKMYELYDPCTVMF   83 (142)
T ss_dssp             SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTSSCSCSSCEEEE
T ss_pred             HhccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccCHHHHHHcCCCCCCEEEE
Confidence            345655 33333 334 689999999999999999999999999999976 79999999999999999999999999999


Q ss_pred             EeCCCCcc---------cccCCC--chhHHHHHHHHhc
Q psy15246         80 LKNLKPVD---------RVEGAD--PESLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~~---------~~~g~~--~~~l~~~i~~~~~  106 (213)
                      |++|+.+.         +..|..  .++|.++|++.+.
T Consensus        84 ~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~  121 (142)
T 1qgv_A           84 FFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  121 (142)
T ss_dssp             EETTEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             EECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHH
Confidence            99998765         244433  3478888888764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.84  E-value=1.4e-20  Score=148.65  Aligned_cols=103  Identities=19%  Similarity=0.411  Sum_probs=93.1

Q ss_pred             eEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +..+|++.+.+ +++++++++|+|||+||++|+.+.|.|+++++.+++ ++.|+.||++.+++++++|+|.++||+++|+
T Consensus        14 ~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~   92 (222)
T 3dxb_A           14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK   92 (222)
T ss_dssp             CEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCTTTGGGGTCCSBSEEEEEE
T ss_pred             ceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCCCHHHHHHcCCCcCCEEEEEE
Confidence            46778755555 578899999999999999999999999999999996 6999999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|+.+.++.|.... +|.++|++.++
T Consensus        93 ~G~~~~~~~G~~~~~~l~~~l~~~l~  118 (222)
T 3dxb_A           93 NGEVAATKVGALSKGQLKEFLDANLA  118 (222)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             CCeEEEEeccccChHHHHHHHHhhcc
Confidence            99998888887665 89999999975

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.84  E-value=1.5e-20  Score=147.14  Aligned_cols=103  Identities=14%  Similarity=0.173  Sum_probs=93.3

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +++++...+...+.++++++|.|||+||++|+.+.|.|+++++.+++ ++.|+.||++++++++++|+|.++||+++|++
T Consensus        99 v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~  177 (210)
T 3apq_A           99 IITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS  177 (210)
T ss_dssp             SEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTCHHHHHHTTCCSSSEEEEECT
T ss_pred             eEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCccHHHHHHcCCCcCCeEEEEEC
Confidence            56777766666678899999999999999999999999999999986 79999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHhc
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+.+.++.|.... +|.++|++.+.
T Consensus       178 G~~~~~~~G~~~~~~l~~~i~~~l~  202 (210)
T 3apq_A          178 GMAAVKYNGDRSKESLVAFAMQHVR  202 (210)
T ss_dssp             TSCCEECCSCCCHHHHHHHHHHHHH
T ss_pred             CCceeEecCCCCHHHHHHHHHHhCc
Confidence            9988888886555 89999999875

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=9.5e-21  Score=137.27  Aligned_cols=105  Identities=24%  Similarity=0.375  Sum_probs=88.4

Q ss_pred             ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      .|++++.+.+...+ .++++++|+|||+||++|+++.|.|+++++.+++ .++.|+.||++++..++++|+|.++||+++
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   87 (133)
T 2dj3_A            8 PVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYF   87 (133)
T ss_dssp             SSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEE
T ss_pred             ceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEE
Confidence            36788886555555 4589999999999999999999999999999973 279999999999999999999999999999


Q ss_pred             EeCCCCcc--ccc-C-CCchhHHHHHHHHhc
Q psy15246         80 LKNLKPVD--RVE-G-ADPESLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~~--~~~-g-~~~~~l~~~i~~~~~  106 (213)
                      |++|+.+.  ++. | .+.++|.++|++++.
T Consensus        88 ~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~  118 (133)
T 2dj3_A           88 APSGDKKNPIKFEGGNRDLEHLSKFIDEHAT  118 (133)
T ss_dssp             ECTTCTTSCEECCSSCCSTTHHHHHHHHHSS
T ss_pred             EeCCCcccceEecCCCcCHHHHHHHHHHhcc
Confidence            99886543  234 6 445589999999975

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.84  E-value=1.3e-20  Score=137.30  Aligned_cols=102  Identities=22%  Similarity=0.354  Sum_probs=88.3

Q ss_pred             ceEEeCC-chhhhhhcC--CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          2 SVVQISE-ELDVEKYGK--DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~--~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      .++++++ +...+.++.  +++++|.|||+||++|+++.|.++++++.+   ++.|+.||++++.+++++|+|+++||++
T Consensus        21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   97 (133)
T 3cxg_A           21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDIHPKLNDQHNIKALPTFE   97 (133)
T ss_dssp             EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccchHHHHHhcCCCCCCEEE
Confidence            4788887 555555643  579999999999999999999999998876   4899999999999999999999999999


Q ss_pred             EEe--CCC--CcccccCCCchhHHHHHHHHhc
Q psy15246         79 ILK--NLK--PVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        79 ~~~--~g~--~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      +|+  +|+  .+.++.|.+.++|.++|++++.
T Consensus        98 ~~~~~~g~g~~~~~~~G~~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           98 FYFNLNNEWVLVHTVEGANQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEEETTEEEEEEEEESCCHHHHHHHHHHHSE
T ss_pred             EEEecCCCeEEEEEEcCCCHHHHHHHHHHHHH
Confidence            997  887  7888889866689999998864

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.83  E-value=5.6e-21  Score=139.48  Aligned_cols=99  Identities=20%  Similarity=0.162  Sum_probs=87.7

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC---------CCchhHHHhCCCcc
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA---------EDLPKLSLNYKVSA   73 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~---------~~~~~l~~~~~I~~   73 (213)
                      +++++.+.+.+.+.+  +++|+|||+||++|+++.|.++++++.++   +.|+.||+         +++++++++|+|.+
T Consensus        18 v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~   92 (135)
T 3emx_A           18 LIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGERELSAARLEMNKAGVEG   92 (135)
T ss_dssp             EEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHHHHHHHHHHHHHHTCCS
T ss_pred             eeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhhhhhhhHHHHHHcCCce
Confidence            567777666666665  99999999999999999999999999886   78999999         88999999999999


Q ss_pred             ccEEEEEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         74 VPTFVILKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        74 ~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +||+++|++|+.+.++.|..+. .+.++++++++
T Consensus        93 ~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~  126 (135)
T 3emx_A           93 TPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYG  126 (135)
T ss_dssp             SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             eCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            9999999999999999998887 58888888864

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.83  E-value=1.1e-20  Score=151.42  Aligned_cols=181  Identities=13%  Similarity=0.123  Sum_probs=125.4

Q ss_pred             CceEEeCCchhh-hhh-cCCCeEEEEEEcCC--CHHHHhHHHHHHHHHHHcC---CCc--EEEEEEeCCCchhHHHhCCC
Q psy15246          1 MSVVQISEELDV-EKY-GKDKTAVVHFYADW--SDECKHMNTLFDEMSKQSK---YSQ--VVFARCIAEDLPKLSLNYKV   71 (213)
Q Consensus         1 M~v~~l~~~~~~-~~~-~~~~~~vV~F~a~w--C~~C~~~~~~~~~l~~~~~---~~~--v~~~~vd~~~~~~l~~~~~I   71 (213)
                      |.+++.+...+. ..+ .-.++++|.||++|  |++|+.+.+.++++++.+.   + +  +.|+.+|++++++++++|+|
T Consensus         6 m~~~~~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~-~~~v~~~~vd~d~~~~~~~~~gv   84 (243)
T 2hls_A            6 VLDLSEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNG-GKLLKLNVYYRESDSDKFSEFKV   84 (243)
T ss_dssp             CCCCCHHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETT-EESEEEEEEETTTTHHHHHHTTC
T ss_pred             hhhCCHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCC-CceeEEEEecCCcCHHHHHhcCC
Confidence            444444442233 334 44689999999999  9999999999999999853   2 2  99999999999999999999


Q ss_pred             ccccEEEEEeCCCCcccccCCCc-hhHHHHHHHHhccCCCCCCcccccCCCcccccchh-hhhhhheeccCC--------
Q psy15246         72 SAVPTFVILKNLKPVDRVEGADP-ESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQ-EVREGLKIYSNW--------  141 (213)
Q Consensus        72 ~~~Pti~~~~~g~~~~~~~g~~~-~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~-~~~~~v~~~apW--------  141 (213)
                      +++||+++| +|  ..++.|... .++..++...+. ..+.+.   .++...++.+.+. ....++.||+||        
T Consensus        85 ~~~Pt~~i~-~g--~~~~~G~~~~~~l~~fv~~~l~-~~~~~~---~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~  157 (243)
T 2hls_A           85 ERVPTVAFL-GG--EVRWTGIPAGEEIRALVEVIMR-LSEDES---GLEDATKEALKSLKGRVHIETIITPSCPYCPYAV  157 (243)
T ss_dssp             CSSSEEEET-TT--TEEEESCCCTTHHHHHHHHHHH-HHTTCC---CCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHH
T ss_pred             CcCCEEEEE-CC--ceeEcCCCcHHHHHHHHHHHHh-ccCCCC---CCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHH
Confidence            999999999 66  555666554 478888887753 122221   1233334433321 223577899999        


Q ss_pred             CCCCC-----------CCCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe--EeehH--HHHHHH
Q psy15246        142 PTYPQ-----------VVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE--LIGGL--DIIKEL  193 (213)
Q Consensus       142 P~~~~-----------~v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~--~~gg~--d~~~~~  193 (213)
                      |.+.+           -+.+..+|++.++++++.+    +..++|++++||+  +.|..  +++.+.
T Consensus       158 p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~----~V~~vPt~~i~G~~~~~G~~~~~~l~~~  220 (243)
T 2hls_A          158 LLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKY----GVMSVPSIAINGYLVFVGVPYEEDFLDY  220 (243)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHT----TCCSSSEEEETTEEEEESCCCHHHHHHH
T ss_pred             HHHHHHHHHcccccCCcEEEEEEECccCHHHHHHc----CCeeeCeEEECCEEEEeCCCCHHHHHHH
Confidence            44432           2567899999988776544    3457888899998  45553  444443

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.83  E-value=1.3e-20  Score=164.35  Aligned_cols=104  Identities=18%  Similarity=0.324  Sum_probs=94.6

Q ss_pred             ceEEeCCchhhhhhcCC---CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          2 SVVQISEELDVEKYGKD---KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~---~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      .|+++|++.+...+.++   ++++|.|||+||++|+++.|.|+++++.+++ .+.|+.|||++++++|++|+|+++||++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Ptl~   80 (481)
T 3f8u_A            2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG-IVPLAKVDCTANTNTCNKYGVSGYPTLK   80 (481)
T ss_dssp             CCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCCEEEEETTTCHHHHHHTTCCEESEEE
T ss_pred             ceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcC-ceEEEEEECCCCHHHHHhcCCCCCCEEE
Confidence            37889998788888777   9999999999999999999999999999997 6999999999999999999999999999


Q ss_pred             EEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         79 ILKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|++|+.+.++.|.... .|.+|+.+.+.
T Consensus        81 ~~~~g~~~~~~~G~~~~~~l~~~~~~~~~  109 (481)
T 3f8u_A           81 IFRDGEEAGAYDGPRTADGIVSHLKKQAG  109 (481)
T ss_dssp             EEETTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred             EEeCCceeeeecCccCHHHHHHHHHhhcc
Confidence            99999877778886665 79999999874

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.83  E-value=2.3e-20  Score=134.15  Aligned_cols=93  Identities=18%  Similarity=0.210  Sum_probs=84.7

Q ss_pred             hhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe--CCCchhHHHhCCCccccEEEEEe-CCCCcccc
Q psy15246         13 EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI--AEDLPKLSLNYKVSAVPTFVILK-NLKPVDRV   89 (213)
Q Consensus        13 ~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd--~~~~~~l~~~~~I~~~Pti~~~~-~g~~~~~~   89 (213)
                      ....++++++|.||++||++|+++.|.++++++.+++ ++.++.||  ++++.+++++|+|.++||+++|+ +|+.+.++
T Consensus        21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~   99 (126)
T 2l57_A           21 EEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG-KFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVH   99 (126)
T ss_dssp             TTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS-SCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred             HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEe
Confidence            4457789999999999999999999999999999975 89999999  99999999999999999999999 99988888


Q ss_pred             cCCCch-hHHHHHHHHhc
Q psy15246         90 EGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        90 ~g~~~~-~l~~~i~~~~~  106 (213)
                      .|.... +|.++|++++.
T Consensus       100 ~G~~~~~~l~~~l~~~~~  117 (126)
T 2l57_A          100 QGLMRKNNIETILNSLGV  117 (126)
T ss_dssp             ESCCCHHHHHHHHHHHCC
T ss_pred             cCCCCHHHHHHHHHHHhc
Confidence            886665 79999999874

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.83  E-value=5.6e-21  Score=140.94  Aligned_cols=102  Identities=13%  Similarity=0.102  Sum_probs=78.1

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCC--CHHHHhHHHHHHHHHHHcCCCcEE--EEEEeCCCchhHHHhCCCccccEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADW--SDECKHMNTLFDEMSKQSKYSQVV--FARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~w--C~~C~~~~~~~~~l~~~~~~~~v~--~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      +..++++.+.+.+.+++.++|.|+++|  |++|+.+.|.|+++++++ + ++.  |++||++++++++++|+|+++||++
T Consensus        19 ~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~   96 (142)
T 2es7_A           19 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQSEAIGDRFNVRRFPATL   96 (142)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHHHHHHHHTTTCCSSSEEE
T ss_pred             CcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCCCHHHHHhcCCCcCCeEE
Confidence            467888767777777778999999988  999999999999999999 5 788  9999999999999999999999999


Q ss_pred             EEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         79 ILKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|++|+.+.++.|..+. +|.++|++.++
T Consensus        97 ~fk~G~~v~~~~G~~~~~~l~~~i~~~l~  125 (142)
T 2es7_A           97 VFTDGKLRGALSGIHPWAELLTLMRSIVD  125 (142)
T ss_dssp             EESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             EEeCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            99999999999997665 79999999875

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.72  E-value=3.4e-22  Score=138.55  Aligned_cols=103  Identities=27%  Similarity=0.589  Sum_probs=91.3

Q ss_pred             CceEEeCCchhh-hhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          1 MSVVQISEELDV-EKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         1 M~v~~l~~~~~~-~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      |++++++++.+. .+.+++++++|.||++||++|+.+.|.++++++.+++ ++.++.+|++++.+++++|+|.++||+++
T Consensus         1 ~~v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (106)
T 2yj7_A            1 MSVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDENPNTAAQYGIRSIPTLLL   79 (106)
Confidence            789999996555 4457889999999999999999999999999999986 79999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCch-hHHHHHHHH
Q psy15246         80 LKNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      |++|+.+.++.|.... +|.++|+++
T Consensus        80 ~~~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           80 FKNGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            9999988888887655 688888765

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=99.83  E-value=4.5e-21  Score=136.19  Aligned_cols=84  Identities=36%  Similarity=0.733  Sum_probs=70.8

Q ss_pred             CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCCC-CceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeeh
Q psy15246        108 MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVV-PYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGG  186 (213)
Q Consensus       108 ~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~v-~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg  186 (213)
                      +||+|.. +.|+++.       .++.+|..+.        + +|..+|+..++++++.|+++++|||+|||||+|+||||
T Consensus        26 ~Kgt~~~-P~C~fc~-------~ak~lL~~~g--------v~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~IGG   89 (118)
T 2wul_A           26 LKGTPEQ-PQCGFSN-------AVVQILRLHG--------VRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG   89 (118)
T ss_dssp             ESBCSSS-BSSHHHH-------HHHHHHHHTT--------CCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEEEC
T ss_pred             EcCCCCC-CCCHHHH-------HHHHHHHHhC--------CcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEEECC
Confidence            7888876 6667665       3334444332        4 69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCchhhccCCC
Q psy15246        187 LDIIKELQVANKLIPTLDQPP  207 (213)
Q Consensus       187 ~d~~~~~~~~~~l~~~~~~~~  207 (213)
                      +|++.+|+++|+|.++|+...
T Consensus        90 ~Ddl~~l~~~GeL~~lL~~~G  110 (118)
T 2wul_A           90 CDILLQMHQNGDLVEELKKLG  110 (118)
T ss_dssp             HHHHHHHHHHTHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHcC
Confidence            999999999999999998554

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.5e-21  Score=142.65  Aligned_cols=101  Identities=20%  Similarity=0.374  Sum_probs=85.1

Q ss_pred             eEEeCCchhhhhhcC--CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc------cc
Q psy15246          3 VVQISEELDVEKYGK--DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS------AV   74 (213)
Q Consensus         3 v~~l~~~~~~~~~~~--~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~------~~   74 (213)
                      +++++++.+.+.+.+  +++++|+|||+||++|+++.|.|+++++++++.++.|+.||++++++++++|+|.      ++
T Consensus         9 v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~   88 (137)
T 2dj0_A            9 IKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQL   88 (137)
T ss_dssp             CEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCS
T ss_pred             EEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCC
Confidence            677888666666533  3499999999999999999999999999997547999999999999999999999      99


Q ss_pred             cEEEEEeCCCCcccccCCCch-hHHHHHHH
Q psy15246         75 PTFVILKNLKPVDRVEGADPE-SLDKKLQN  103 (213)
Q Consensus        75 Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~  103 (213)
                      ||+++|++|+.+.++.|.... +|.+++.+
T Consensus        89 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~  118 (137)
T 2dj0_A           89 PTLILFQGGKEAMRRPQIDKKGRAVSWTFS  118 (137)
T ss_dssp             SEEEEESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred             CEEEEEECCEEEEEecCcCchHHHHHHHhc
Confidence            999999999988888886654 45555433

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=5.5e-20  Score=134.29  Aligned_cols=97  Identities=23%  Similarity=0.300  Sum_probs=83.0

Q ss_pred             eEEeCCchhhhhhc---CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISEELDVEKYG---KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~~~~~~~~~---~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +++++.+.+.+.+.   .+++++|+|||+||++|+.+.|.|++++++++  ++.|+.||++++.   ++|+|.++||+++
T Consensus        12 v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~~---~~~~i~~~Pt~~~   86 (135)
T 2dbc_A           12 LREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSCI---EHYHDNCLPTIFV   86 (135)
T ss_dssp             CEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSSC---SSCCSSCCSEEEE
T ss_pred             eEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcCc---ccCCCCCCCEEEE
Confidence            67786655555553   23699999999999999999999999999997  7999999999875   7999999999999


Q ss_pred             EeCCCCcccccCCC--------chhHHHHHHHH
Q psy15246         80 LKNLKPVDRVEGAD--------PESLDKKLQNQ  104 (213)
Q Consensus        80 ~~~g~~~~~~~g~~--------~~~l~~~i~~~  104 (213)
                      |++|+.+.++.|..        .++|.++|.++
T Consensus        87 ~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           87 YKNGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             ESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             EECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence            99999999888874        34788888876

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.82  E-value=7.8e-20  Score=160.36  Aligned_cols=104  Identities=17%  Similarity=0.309  Sum_probs=94.2

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      |++++++.+...++++++++|.||||||++|+++.|.|+++++.+++.++.|++|||+.++++|++|+|+++||+++|++
T Consensus        16 v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   95 (504)
T 2b5e_A           16 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKN   95 (504)
T ss_dssp             CEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             cEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEeC
Confidence            78899977788888999999999999999999999999999999986349999999999999999999999999999999


Q ss_pred             CCC--cccccCCCch-hHHHHHHHHhc
Q psy15246         83 LKP--VDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        83 g~~--~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+.  ..++.|.... .|.+|+.+.+.
T Consensus        96 g~~~~~~~~~G~~~~~~l~~~l~~~~~  122 (504)
T 2b5e_A           96 SDVNNSIDYEGPRTAEAIVQFMIKQSQ  122 (504)
T ss_dssp             TCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             CccccceeecCCCCHHHHHHHHHHhcC
Confidence            986  6677786555 79999998875

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.82  E-value=6.5e-20  Score=130.61  Aligned_cols=102  Identities=19%  Similarity=0.279  Sum_probs=85.1

Q ss_pred             ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC----CcEEEEEEeCCCchhHHHhCCCccccE
Q psy15246          2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY----SQVVFARCIAEDLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~----~~v~~~~vd~~~~~~l~~~~~I~~~Pt   76 (213)
                      .+.+++.+.+...+ .++++++|+|||+||++|+++.|.|+++++.+++    .++.|+.||+++++ +++  +|.++||
T Consensus         8 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt   84 (121)
T 2djj_A            8 PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPT   84 (121)
T ss_dssp             SSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSE
T ss_pred             CeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCe
Confidence            46788886666554 7889999999999999999999999999999874    26999999999876 665  9999999


Q ss_pred             EEEEeCCCC--cccccCCCch-hHHHHHHHHhc
Q psy15246         77 FVILKNLKP--VDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        77 i~~~~~g~~--~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +++|++|..  +.++.|.... +|.++|++++.
T Consensus        85 ~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~  117 (121)
T 2djj_A           85 IKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  117 (121)
T ss_dssp             EEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             EEEEeCcCCCCceEecCCCCHHHHHHHHHhccC
Confidence            999998744  6677776554 79999998863

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.82  E-value=9.7e-21  Score=134.72  Aligned_cols=99  Identities=15%  Similarity=0.200  Sum_probs=80.0

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC----CCchhHHHhCCCccccEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA----EDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~----~~~~~l~~~~~I~~~Pti~   78 (213)
                      +..++.+.....+.++++++|.|||+||++|+++.|.++++++.++. .+.++.++.    +...+++++|+|.++||++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~   92 (118)
T 1zma_A           14 LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFINSEEPSQLNDLQAFRSRYGIPTVPGFV   92 (118)
T ss_dssp             SEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEEETTCGGGHHHHHHHHHHHTCCSSCEEE
T ss_pred             hhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-eEEEEECCCcCcHHHHHHHHHHcCCCCCCeEE
Confidence            34566666666677889999999999999999999999999998874 565553322    2345899999999999999


Q ss_pred             EEeCCCCcccccCCCch-hHHHHHH
Q psy15246         79 ILKNLKPVDRVEGADPE-SLDKKLQ  102 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~~-~l~~~i~  102 (213)
                      +|++|+.+.++.|..+. +|.++|+
T Consensus        93 ~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           93 HITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEECCEEEEEecCCCCHHHHHHHhh
Confidence            99999988888887665 6888774

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.3e-19  Score=149.21  Aligned_cols=104  Identities=19%  Similarity=0.324  Sum_probs=89.7

Q ss_pred             ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--CchhHHHhCCCccccEEE
Q psy15246          2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE--DLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--~~~~l~~~~~I~~~Pti~   78 (213)
                      .|++|+.+.+.+.+ +.+++++|+|||+||++|+++.|.|+++++.+++ .+.++.||++  ++.++|++|+|.++||++
T Consensus        18 ~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~-~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~   96 (298)
T 3ed3_A           18 HISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCDLNKNKALCAKYDVNGFPTLM   96 (298)
T ss_dssp             TCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTSTTTHHHHHHTTCCBSSEEE
T ss_pred             CeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccC-CcEEEEEEccCccCHHHHHhCCCCccceEE
Confidence            37899997777776 6788999999999999999999999999999986 6899999988  689999999999999999


Q ss_pred             EEeCCCC-----------------cccccCCCch-hHHHHHHHHhc
Q psy15246         79 ILKNLKP-----------------VDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        79 ~~~~g~~-----------------~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|++|+.                 ...+.|.... .|.+|+.+.+.
T Consensus        97 ~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~  142 (298)
T 3ed3_A           97 VFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR  142 (298)
T ss_dssp             EEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC
T ss_pred             EEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc
Confidence            9999872                 3445665555 79999998864

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.80  E-value=7.2e-21  Score=137.16  Aligned_cols=103  Identities=23%  Similarity=0.476  Sum_probs=90.6

Q ss_pred             ceEEeCC-chhhhhhc----CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccE
Q psy15246          2 SVVQISE-ELDVEKYG----KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~----~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pt   76 (213)
                      +++++++ +.+.+.+.    ++++++|.||++||++|+++.|.++++++.++  ++.|+.||++++++++++|+|.++||
T Consensus        15 ~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt   92 (130)
T 1wmj_A           15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDELKEVAEKYNVEAMPT   92 (130)
T ss_dssp             SSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTTSGGGHHHHTCCSSCC
T ss_pred             ceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccchHHHHHHcCCCccce
Confidence            4667765 44444443    58999999999999999999999999999998  79999999999999999999999999


Q ss_pred             EEEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         77 FVILKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        77 i~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      ++++++|+.+.++.|.+.++|.++|+++++
T Consensus        93 ~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~  122 (130)
T 1wmj_A           93 FLFIKDGAEADKVVGARKDDLQNTIVKHVG  122 (130)
T ss_dssp             CCBCTTTTCCBCCCTTCTTTHHHHHHHHTS
T ss_pred             EEEEeCCeEEEEEeCCCHHHHHHHHHHHHh
Confidence            999999999998889777789999999875

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.80  E-value=1.8e-19  Score=151.63  Aligned_cols=156  Identities=13%  Similarity=0.251  Sum_probs=117.6

Q ss_pred             eEEeCCchhhhhhcC-CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--CchhHHHhCCCcc--ccEE
Q psy15246          3 VVQISEELDVEKYGK-DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE--DLPKLSLNYKVSA--VPTF   77 (213)
Q Consensus         3 v~~l~~~~~~~~~~~-~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--~~~~l~~~~~I~~--~Pti   77 (213)
                      |.+++.+.....+.+ .++++|.||++||++|+++.+.|+++++.+++ ++.|+.+|++  .++.+++.|||.+  +|++
T Consensus       119 v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~-~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~  197 (361)
T 3uem_A          119 VIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG-KILFIFIDSDHTDNQRILEFFGLKKEECPAV  197 (361)
T ss_dssp             EEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTT-TCEEEEECTTSGGGHHHHHHTTCCTTTCSEE
T ss_pred             ceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccC-ceEEEEecCChHHHHHHHHHcCCCccCCccE
Confidence            567787666666644 45789999999999999999999999999998 7999999999  7899999999998  9999


Q ss_pred             EEEeCCCCccccc----CCCchhHHHHHHHHhcc-C----CCC--C-----CcccccCCCcccccc-hhhhhhhheeccC
Q psy15246         78 VILKNLKPVDRVE----GADPESLDKKLQNQAST-M----KNQ--P-----SNITHVPYDTFDILQ-DQEVREGLKIYSN  140 (213)
Q Consensus        78 ~~~~~g~~~~~~~----g~~~~~l~~~i~~~~~~-~----kg~--p-----~~~~~~~~~~f~~l~-~~~~~~~v~~~ap  140 (213)
                      +++..|.....+.    ..+.++|.+|+++.++. .    +..  |     ..+..++..+|+.+. +....++|.||||
T Consensus       198 ~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~  277 (361)
T 3uem_A          198 RLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAP  277 (361)
T ss_dssp             EEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECT
T ss_pred             EEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecC
Confidence            9999865443333    35555899999998754 1    111  1     114456677777432 4455689999999


Q ss_pred             C--------CCCCCC---------CCceEEeccCCH
Q psy15246        141 W--------PTYPQV---------VPYDTFDILQDQ  159 (213)
Q Consensus       141 W--------P~~~~~---------v~~~~~d~~~~~  159 (213)
                      |        |.|.++         +.++.+|++.+.
T Consensus       278 wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~  313 (361)
T 3uem_A          278 WCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE  313 (361)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB
T ss_pred             cCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc
Confidence            9        455444         567889998875

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.79  E-value=2.8e-19  Score=128.34  Aligned_cols=102  Identities=21%  Similarity=0.266  Sum_probs=84.0

Q ss_pred             CceEEeCC-chhhhhhc--CCCeEEEEEEcC-------CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-------CCch
Q psy15246          1 MSVVQISE-ELDVEKYG--KDKTAVVHFYAD-------WSDECKHMNTLFDEMSKQSKYSQVVFARCIA-------EDLP   63 (213)
Q Consensus         1 M~v~~l~~-~~~~~~~~--~~~~~vV~F~a~-------wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-------~~~~   63 (213)
                      |..+.+.+ +.+...+.  ++++++|.|||+       ||++|+.+.|.++++++.+++ ++.|+.||+       +.+.
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~~~d~~~   82 (123)
T 1wou_A            4 YEEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPNN   82 (123)
T ss_dssp             CEEEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHHHCTTC
T ss_pred             ceeEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCchhhhchhH
Confidence            34455554 44555554  489999999999       999999999999999999986 899999999       7899


Q ss_pred             hHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHHH
Q psy15246         64 KLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN  103 (213)
Q Consensus        64 ~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~  103 (213)
                      +++++|+|.++||+++|+++..+....|.+.+.|.++|++
T Consensus        83 ~~~~~~~i~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~  122 (123)
T 1wou_A           83 DFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE  122 (123)
T ss_dssp             HHHHHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred             HHHHHCCCCeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence            9999999999999999998766655566666678888764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.78  E-value=3.6e-19  Score=141.16  Aligned_cols=103  Identities=21%  Similarity=0.382  Sum_probs=89.1

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      +..++.+.....+..+++++|.|||+||++|+.+.|.|+++++.+.+  .++.|+.||++++++++++|+|+++||+++|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  211 (241)
T 3idv_A          132 TLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIF  211 (241)
T ss_dssp             SEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEE
Confidence            45667766677777889999999999999999999999999998864  2499999999999999999999999999999


Q ss_pred             eCCCCcccccCCCc-hhHHHHHHHHhc
Q psy15246         81 KNLKPVDRVEGADP-ESLDKKLQNQAS  106 (213)
Q Consensus        81 ~~g~~~~~~~g~~~-~~l~~~i~~~~~  106 (213)
                      ++|+.+. +.|... ++|.+||.+.++
T Consensus       212 ~~g~~~~-~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          212 RKGRPYD-YNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             ETTEEEE-CCSCCSHHHHHHHHHHHTT
T ss_pred             ECCeEEE-ecCCCCHHHHHHHHHhhhC
Confidence            9998877 455444 489999999864

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.78  E-value=4.8e-19  Score=139.48  Aligned_cols=99  Identities=21%  Similarity=0.233  Sum_probs=85.2

Q ss_pred             eCCchhhhhhcCCCeE-EEEEEcCCCHHHHhHHHHHHHHHHHcC----CCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          6 ISEELDVEKYGKDKTA-VVHFYADWSDECKHMNTLFDEMSKQSK----YSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         6 l~~~~~~~~~~~~~~~-vV~F~a~wC~~C~~~~~~~~~l~~~~~----~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      ++++........++++ +|.|||+||++|+++.|.|+++++.++    + ++.++.||++++++++++|+|+++||+++|
T Consensus       121 l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  199 (226)
T 1a8l_A          121 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKG-KILGDMVEAIEYPEWADQYNVMAVPKIVIQ  199 (226)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCC-CEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCC-cEEEEEEEcccCHHHHHhCCCcccCeEEEE
Confidence            3444344444556666 999999999999999999999999986    4 799999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      ++|+.+.++.|..+. +|.++|++.+
T Consensus       200 ~~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          200 VNGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCceeEEEcCCCCHHHHHHHHHHhh
Confidence            999888888898776 6999998875

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.78  E-value=1.4e-19  Score=142.52  Aligned_cols=99  Identities=18%  Similarity=0.263  Sum_probs=84.3

Q ss_pred             eEEe-CCchhhhhh-c--CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          3 VVQI-SEELDVEKY-G--KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         3 v~~l-~~~~~~~~~-~--~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      |.++ +.+.+...+ +  .+++++|+|||+||++|+.+.|.|+++++.++  ++.|+.||++ +++++.+|+|.++||++
T Consensus       101 v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~-~~~l~~~~~i~~~PTl~  177 (217)
T 2trc_P          101 VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS-NTGAGDRFSSDVLPTLL  177 (217)
T ss_dssp             EEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH-HHTCSTTSCGGGCSEEE
T ss_pred             EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC-cHHHHHHCCCCCCCEEE
Confidence            6777 445555555 2  24899999999999999999999999999997  7999999999 88999999999999999


Q ss_pred             EEeCCCCcccccCCCc--------hhHHHHHHHH
Q psy15246         79 ILKNLKPVDRVEGADP--------ESLDKKLQNQ  104 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~--------~~l~~~i~~~  104 (213)
                      +|++|+.+.++.|...        .+|..+|.++
T Consensus       178 ~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          178 VYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            9999998888888665        4677777764

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.77  E-value=1.1e-18  Score=126.89  Aligned_cols=99  Identities=20%  Similarity=0.312  Sum_probs=82.1

Q ss_pred             EEeCC-chhhhhhc--CCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeC----CCchhHHHhCCCcc
Q psy15246          4 VQISE-ELDVEKYG--KDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIA----EDLPKLSLNYKVSA   73 (213)
Q Consensus         4 ~~l~~-~~~~~~~~--~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~----~~~~~l~~~~~I~~   73 (213)
                      ..+++ +.....++  .+++++|.|||+||++|+++.|.+   .++++.++  ++.++.||+    +.+.+++++|+|.+
T Consensus        14 ~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~~~~~~l~~~~~v~~   91 (134)
T 2fwh_A           14 TQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTANDAQDVALLKHLNVLG   91 (134)
T ss_dssp             EECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCCHHHHHHHHHTTCCS
T ss_pred             EEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCcchHHHHHHHcCCCC
Confidence            34555 33333342  489999999999999999999999   99999998  699999999    56788999999999


Q ss_pred             ccEEEEE-eCCCCc--ccccCCCch-hHHHHHHHH
Q psy15246         74 VPTFVIL-KNLKPV--DRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        74 ~Pti~~~-~~g~~~--~~~~g~~~~-~l~~~i~~~  104 (213)
                      +||+++| ++|+.+  .++.|.... +|.++|++.
T Consensus        92 ~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           92 LPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             SSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence            9999999 789887  678887665 788888776

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.77  E-value=7.4e-19  Score=127.38  Aligned_cols=89  Identities=13%  Similarity=0.250  Sum_probs=78.6

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHH--HHHHHcCCCcEEEEEEeC---CCchhHHHhCCC---ccccEEEEE-eCCCCc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFD--EMSKQSKYSQVVFARCIA---EDLPKLSLNYKV---SAVPTFVIL-KNLKPV   86 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~--~l~~~~~~~~v~~~~vd~---~~~~~l~~~~~I---~~~Pti~~~-~~g~~~   86 (213)
                      .++++++|+||++||++|+.+.|.|+  ++++.+.+ ++.++.||+   +.+.+++++|+|   .++||+++| ++|+.+
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEE
Confidence            56999999999999999999999999  99998865 799999999   899999999999   999999999 699988


Q ss_pred             ccccC-------CCc-hhHHHHHHHHh
Q psy15246         87 DRVEG-------ADP-ESLDKKLQNQA  105 (213)
Q Consensus        87 ~~~~g-------~~~-~~l~~~i~~~~  105 (213)
                      .+..|       ... +++.++|+++.
T Consensus       106 ~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A          106 YTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             EECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             EEecCCcccccccCCHHHHHHHHHHhc
Confidence            77777       333 47888887753

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.76  E-value=8.6e-18  Score=147.77  Aligned_cols=106  Identities=13%  Similarity=0.267  Sum_probs=87.3

Q ss_pred             ceEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCC--CchhHHHhCCCccccE
Q psy15246          2 SVVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAE--DLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~--~~~~l~~~~~I~~~Pt   76 (213)
                      +|++++++.+... ..++++++|+|||+||++|+++.|.|+++++++++  ..+.|+.||++  ++.++|++|+|.++||
T Consensus        13 ~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PT   92 (519)
T 3t58_A           13 PLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPT   92 (519)
T ss_dssp             SSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSE
T ss_pred             CcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCE
Confidence            3678888655554 47789999999999999999999999999999874  35999999995  4899999999999999


Q ss_pred             EEEEeCCC----Ccc-cccCCCchhHHHHHHHHhcc
Q psy15246         77 FVILKNLK----PVD-RVEGADPESLDKKLQNQAST  107 (213)
Q Consensus        77 i~~~~~g~----~~~-~~~g~~~~~l~~~i~~~~~~  107 (213)
                      +++|++|+    .+. +.+|.+.++|.++|.+.+..
T Consensus        93 l~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~  128 (519)
T 3t58_A           93 VRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES  128 (519)
T ss_dssp             EEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTT
T ss_pred             EEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhh
Confidence            99999543    333 34455556899999999864

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.76  E-value=2.9e-18  Score=124.82  Aligned_cols=102  Identities=11%  Similarity=0.122  Sum_probs=88.6

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcc--ccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA--VPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~--~Pti~~~   80 (213)
                      |+++|++.+...++++.+++|.|||+ |++|+.+.|.++++|+++++ ++.|+++|.+++++++++|||++  +||+++|
T Consensus         8 v~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~g-k~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~   85 (133)
T 2djk_A            8 IGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRG-VINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQ   85 (133)
T ss_dssp             SEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTT-TSEEEEECTTTTGGGTTTTTCCSSSSSEEEEE
T ss_pred             eeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCC-eEEEEEEchHHhHHHHHHcCCCcccCCEEEEE
Confidence            56788876667778889999999999 89999999999999999997 89999999999999999999999  9999999


Q ss_pred             eC--CCCccccc--CCCch-hHHHHHHHHhcc
Q psy15246         81 KN--LKPVDRVE--GADPE-SLDKKLQNQAST  107 (213)
Q Consensus        81 ~~--g~~~~~~~--g~~~~-~l~~~i~~~~~~  107 (213)
                      ++  |+.. +..  |..+. .|.+||++++..
T Consensus        86 ~~~~g~~~-~~~~~g~~~~~~l~~fi~~~l~G  116 (133)
T 2djk_A           86 EVAKNQKF-PFDQEKEITFEAIKAFVDDFVAG  116 (133)
T ss_dssp             CTTTCCBC-CCCSSSCCCHHHHHHHHHHHHHT
T ss_pred             ecCcCccc-CCCCccccCHHHHHHHHHHHHcC
Confidence            97  6664 443  65554 799999998753

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.76  E-value=6.3e-19  Score=140.95  Aligned_cols=100  Identities=19%  Similarity=0.251  Sum_probs=82.9

Q ss_pred             ceEEeC-Cchhhhhh-c--CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          2 SVVQIS-EELDVEKY-G--KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         2 ~v~~l~-~~~~~~~~-~--~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      .|++|+ ...+...+ .  +++++||+|||+||++|+.+.|.|+++++.++  ++.|++||++. .+++.+|+|.++||+
T Consensus       113 ~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~-~~l~~~~~I~~~PTl  189 (245)
T 1a0r_P          113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN-TGAGDRFSSDVLPTL  189 (245)
T ss_dssp             SEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH-HCCTTSSCTTTCSEE
T ss_pred             eEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc-HHHHHHCCCCCCCEE
Confidence            367784 45555555 2  48899999999999999999999999999998  69999999987 789999999999999


Q ss_pred             EEEeCCCCcccccCCCc--------hhHHHHHHHH
Q psy15246         78 VILKNLKPVDRVEGADP--------ESLDKKLQNQ  104 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~--------~~l~~~i~~~  104 (213)
                      ++|++|+.+.++.|...        ..|..+|.++
T Consensus       190 l~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          190 LVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             EEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             EEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            99999988877777532        2477777665

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.76  E-value=1.9e-18  Score=115.20  Aligned_cols=82  Identities=22%  Similarity=0.324  Sum_probs=72.8

Q ss_pred             CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCC-CchhH
Q psy15246         19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA-DPESL   97 (213)
Q Consensus        19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~-~~~~l   97 (213)
                      .+.++.||++||++|+++.|.++++++++++ ++.++.+|++++++++++|+|.++||+++  +|+.  +..|. +.++|
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l   77 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEAL   77 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHH
Confidence            4689999999999999999999999999986 79999999999999999999999999988  8876  56675 44589


Q ss_pred             HHHHHHHh
Q psy15246         98 DKKLQNQA  105 (213)
Q Consensus        98 ~~~i~~~~  105 (213)
                      .++|++++
T Consensus        78 ~~~l~~~l   85 (85)
T 1fo5_A           78 VEAIKKRL   85 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99988763

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=1.1e-18  Score=125.75  Aligned_cols=102  Identities=23%  Similarity=0.297  Sum_probs=84.0

Q ss_pred             EEeCCchhhhhh----cCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCC--CchhHHHhCCCccc
Q psy15246          4 VQISEELDVEKY----GKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAE--DLPKLSLNYKVSAV   74 (213)
Q Consensus         4 ~~l~~~~~~~~~----~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~--~~~~l~~~~~I~~~   74 (213)
                      +.+++..+.+.+    .++++++|.||++||++|+++.|.+   +++.+.+.. ++.++.||++  .+.+++++|+|.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~v~~~   87 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKMDMEKGEGVELRKKYGVHAY   87 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH-HSEEEEECSSSTTHHHHHHHTTCCSS
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc-CeEEEEEecCCcchHHHHHHcCCCCC
Confidence            344443344433    4689999999999999999999999   777776654 6889999998  57899999999999


Q ss_pred             cEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         75 PTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        75 Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ||+++| ++|+.+.++.|.... +|.++|++.+.
T Consensus        88 Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~  121 (130)
T 2kuc_A           88 PTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVE  121 (130)
T ss_dssp             CEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHH
Confidence            999999 589988888887665 79999999875

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.75  E-value=8.2e-18  Score=134.13  Aligned_cols=162  Identities=15%  Similarity=0.172  Sum_probs=106.6

Q ss_pred             CCCeEEEEEE-cCCCHHHH-hHHHHHHHHHHHcCCCcE-EEEEEeCC----------------------CchhHHHhCCC
Q psy15246         17 KDKTAVVHFY-ADWSDECK-HMNTLFDEMSKQSKYSQV-VFARCIAE----------------------DLPKLSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~-~~~~~~~~l~~~~~~~~v-~~~~vd~~----------------------~~~~l~~~~~I   71 (213)
                      .+++++|.|| ++||++|. ...|.+.++.+++++.++ .++.|+.+                      .+.+++++||+
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  111 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM  111 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence            5789999999 99999999 999999999988864468 78888754                      23457888888


Q ss_pred             c-----------cccEEEEEeCCCCcccccCCCc-------hhHHHHHHHHhcc-CCCCCCc---ccccCCCcccccchh
Q psy15246         72 S-----------AVPTFVILKNLKPVDRVEGADP-------ESLDKKLQNQAST-MKNQPSN---ITHVPYDTFDILQDQ  129 (213)
Q Consensus        72 ~-----------~~Pti~~~~~g~~~~~~~g~~~-------~~l~~~i~~~~~~-~kg~p~~---~~~~~~~~f~~l~~~  129 (213)
                      .           ..|+.+++++|+......|...       ..+.+.++..... ++..+-.   ...|++..       
T Consensus       112 ~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~~~i~~~~i~ly~~~~Cp~C~-------  184 (241)
T 1nm3_A          112 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAPQHQVQESISIFTKPGCPFCA-------  184 (241)
T ss_dssp             EEECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCTTSCCCCCEEEEECSSCHHHH-------
T ss_pred             eeecccccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHHHhhhhccccceEEEEECCCChHHH-------
Confidence            6           3476555599987766655422       1233333333110 0000000   00111111       


Q ss_pred             hhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHH
Q psy15246        130 EVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQ  194 (213)
Q Consensus       130 ~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~  194 (213)
                      .++.++....        ++|..+|+..+++ ++.+++..+++++|+|+++|+++||+|++.++.
T Consensus       185 ~a~~~L~~~~--------i~~~~~~i~~~~~-~~~l~~~~g~~~vP~~~~~g~~i~g~~~i~~~l  240 (241)
T 1nm3_A          185 KAKQLLHDKG--------LSFEEIILGHDAT-IVSVRAVSGRTTVPQVFIGGKHIGGSDDLEKYF  240 (241)
T ss_dssp             HHHHHHHHHT--------CCCEEEETTTTCC-HHHHHHHTCCSSSCEEEETTEEEESHHHHHHC-
T ss_pred             HHHHHHHHcC--------CceEEEECCCchH-HHHHHHHhCCCCcCEEEECCEEEECHHHHHHHh
Confidence            1223333222        8899999998744 367787889999999999999999999998754

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.74  E-value=1.9e-18  Score=115.19  Aligned_cols=81  Identities=20%  Similarity=0.202  Sum_probs=72.3

Q ss_pred             eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCC-CchhHH
Q psy15246         20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA-DPESLD   98 (213)
Q Consensus        20 ~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~-~~~~l~   98 (213)
                      ..+|.||++||++|+++.|.++++++++++ ++.++.+|++++++++++|+|.++||+++  +|+.  +..|. +.++|.
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~   77 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELF   77 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHH
Confidence            458899999999999999999999999986 79999999999999999999999999998  8876  56665 555899


Q ss_pred             HHHHHHh
Q psy15246         99 KKLQNQA  105 (213)
Q Consensus        99 ~~i~~~~  105 (213)
                      ++|++.+
T Consensus        78 ~~l~~~l   84 (85)
T 1nho_A           78 EAINDEM   84 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998875

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.74  E-value=1.6e-17  Score=132.92  Aligned_cols=100  Identities=17%  Similarity=0.217  Sum_probs=85.2

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEE--cCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCC-----chhHHHhCCCc
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFY--ADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAED-----LPKLSLNYKVS   72 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~--a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~-----~~~l~~~~~I~   72 (213)
                      .|+++++.++..++.++++++|.||  ||||+    +.|.|+++++.+.+  .++.|++|||++     ++++|++|+|+
T Consensus        17 ~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~   92 (248)
T 2c0g_A           17 GCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVD   92 (248)
T ss_dssp             TCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCC
T ss_pred             CcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCC
Confidence            3788998777778888999999999  99999    99999999999842  279999999998     89999999999


Q ss_pred             --cccEEEEEeCCCC--cccc--cCCCc-hhHHHHHHHHhc
Q psy15246         73 --AVPTFVILKNLKP--VDRV--EGADP-ESLDKKLQNQAS  106 (213)
Q Consensus        73 --~~Pti~~~~~g~~--~~~~--~g~~~-~~l~~~i~~~~~  106 (213)
                        ++||+++|+ |+.  ...+  .|... ++|.+||.+.++
T Consensus        93 ~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           93 DKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             TTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             cCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence              999999999 873  3444  55444 489999999875

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.74  E-value=2.9e-18  Score=120.12  Aligned_cols=95  Identities=12%  Similarity=0.051  Sum_probs=78.1

Q ss_pred             eEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCcc-ccE
Q psy15246          3 VVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSA-VPT   76 (213)
Q Consensus         3 v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~-~Pt   76 (213)
                      +..|++ +.+.++++++++++|.|+|+|||+|+.+.|.++++++. .  ++.++.||++++++    ++.+|+|++ .||
T Consensus         8 ~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~--~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq   84 (112)
T 3iv4_A            8 AIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-R--DMDGYYLIVQQERDLSDYIAKKTNVKHESPQ   84 (112)
T ss_dssp             EEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-H--TCCEEEEEGGGGHHHHHHHHHHHTCCCCSSE
T ss_pred             eeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-C--CceEEEEEeecCchhhHHHHHHhCCccCCCe
Confidence            467777 45556677799999999999999999999999999985 4  79999999999976    799999995 999


Q ss_pred             EEEEeCCCCcccccC--CCchhHHHH
Q psy15246         77 FVILKNLKPVDRVEG--ADPESLDKK  100 (213)
Q Consensus        77 i~~~~~g~~~~~~~g--~~~~~l~~~  100 (213)
                      +++|++|+.+.+...  .+..+|.+.
T Consensus        85 ~il~k~G~~v~~~SH~~I~~~~l~~~  110 (112)
T 3iv4_A           85 AFYFVNGEMVWNRDHGDINVSSLAQA  110 (112)
T ss_dssp             EEEEETTEEEEEEEGGGCSHHHHHHH
T ss_pred             EEEEECCEEEEEeeccccCHHHHHHh
Confidence            999999998876443  233345544

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.74  E-value=2.3e-18  Score=122.01  Aligned_cols=90  Identities=20%  Similarity=0.172  Sum_probs=71.1

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC-CCcEEEEEEeCCCc--hhHHHhCCCccccEEEEEeCCCCcccccCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDL--PKLSLNYKVSAVPTFVILKNLKPVDRVEGAD   93 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~-~~~v~~~~vd~~~~--~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~   93 (213)
                      +.+.++|+|||+||++|+++.+.+....+... ...+.+.+||++.+  .+++.+|+|.++|||++|++|+++.+..|+.
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~   96 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYP   96 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCC
Confidence            56789999999999999999875433221110 00267888888875  5899999999999999999999999999988


Q ss_pred             ch-hHHHHHHHHhc
Q psy15246         94 PE-SLDKKLQNQAS  106 (213)
Q Consensus        94 ~~-~l~~~i~~~~~  106 (213)
                      .. .+.++|++.+.
T Consensus        97 ~~~~f~~~L~~~l~  110 (116)
T 3dml_A           97 GEDFFWPMLARLIG  110 (116)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            87 69999988764

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.73  E-value=6.2e-19  Score=148.05  Aligned_cols=170  Identities=11%  Similarity=0.013  Sum_probs=121.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------------CchhHHHhC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------------DLPKLSLNY   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~~   69 (213)
                      .++++||.||++||++|+.+.|.++++.+++++.++.++.|+++                           .+.+++++|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            57999999999999999999999999999998545999999864                           245789999


Q ss_pred             CCccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhccCC---CCCCcccccC--CCcccccchhhhhhhheeccCCC
Q psy15246         70 KVSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQASTMK---NQPSNITHVP--YDTFDILQDQEVREGLKIYSNWP  142 (213)
Q Consensus        70 ~I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~~~k---g~p~~~~~~~--~~~f~~l~~~~~~~~v~~~apWP  142 (213)
                      +|.++|+++++ ++|+.+.++.|.... +|.++|++++....   ..|.. ....  .........++  .++       
T Consensus       161 gV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e~~~~~~lpap-~~~~~~~~~~~~~~spE--~~~-------  230 (352)
T 2hyx_A          161 RNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLNDAKPGVKLPQP-SSTTTPDLTPRAALTPE--TYF-------  230 (352)
T ss_dssp             TCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHHHSTTCCCCSC-GGGTSCCCCCCSCSCCC--EEC-------
T ss_pred             CCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhhccCCCCCCCC-ccccccccCccccCCCc--ccc-------
Confidence            99999999988 588888888886554 79999988875411   11111 0000  00000011111  111       


Q ss_pred             CCCCCCCceEEeccCCHHHHHHHHhhc--CCCcccceEeCCeEeehHHHHHHHHHcCCchh
Q psy15246        143 TYPQVVPYDTFDILQDQEVREGLKIYS--NWPTYPQVYVNTELIGGLDIIKELQVANKLIP  201 (213)
Q Consensus       143 ~~~~~v~~~~~d~~~~~~~~~~l~~~~--~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~  201 (213)
                      .+.+...|+.     +..++++.+.|+  .||++||++++|+..||.|+++.+.+.|.|.-
T Consensus       231 g~~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~  286 (352)
T 2hyx_A          231 GVGKVVNYGG-----GGAYDEGSAVFDYPPSLAANSFALRGRWALDYQGATSDGNDAAIKL  286 (352)
T ss_dssp             STTTCCCBCS-----CSCCCSEEEEECCCSSCCTTEEEEEEEEEECSSCEEECSSSCEEEE
T ss_pred             chhhhhcccC-----CCccCCCceeeecCCCCCCCceeccceeecCcceeeecCCCcEEEE
Confidence            1122234432     455677788888  89999999999999999999988888887753

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.72  E-value=4.2e-17  Score=129.99  Aligned_cols=100  Identities=17%  Similarity=0.227  Sum_probs=86.3

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEc--CCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEe-----CCCchhHHHhCCCc-
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYA--DWSDECKHMNTLFDEMSKQSKY-SQVVFARCI-----AEDLPKLSLNYKVS-   72 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a--~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd-----~~~~~~l~~~~~I~-   72 (213)
                      .|+++++.++..++.++++++|.|||  |||+    +.|.|+++++.+.+ .++.|++||     |+.++++|++|+|+ 
T Consensus         6 ~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~   81 (240)
T 2qc7_A            6 GALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK   81 (240)
T ss_dssp             TCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCG
T ss_pred             CceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCC
Confidence            37889997777788888999999999  9999    99999999999863 379999999     45589999999999 


Q ss_pred             -cccEEEEEeCCC--CcccccCCCch-hHHHHHHHHh
Q psy15246         73 -AVPTFVILKNLK--PVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        73 -~~Pti~~~~~g~--~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                       ++||+++|++|+  ...++.|.... +|.+||.+.+
T Consensus        82 ~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           82 ESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             GGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence             999999999997  35566776555 8999999885

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=118.16  Aligned_cols=97  Identities=41%  Similarity=0.756  Sum_probs=80.2

Q ss_pred             hHHHHHHHHhcc------CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhc
Q psy15246         96 SLDKKLQNQAST------MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYS  169 (213)
Q Consensus        96 ~l~~~i~~~~~~------~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~  169 (213)
                      ++.++|++.+++      +||+|.. ..|++..       .++.++....        ++|..+|+..+++.++.+++++
T Consensus         4 ~~~~~v~~~i~~~~Vvlf~kg~~~~-~~Cp~C~-------~ak~~L~~~g--------i~y~~~di~~d~~~~~~l~~~~   67 (111)
T 3zyw_A            4 DLNLRLKKLTHAAPCMLFMKGTPQE-PRCGFSK-------QMVEILHKHN--------IQFSSFDIFSDEEVRQGLKAYS   67 (111)
T ss_dssp             CHHHHHHHHHTSSSEEEEESBCSSS-BSSHHHH-------HHHHHHHHTT--------CCCEEEEGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCEEEEEecCCCC-CcchhHH-------HHHHHHHHcC--------CCeEEEECcCCHHHHHHHHHHH
Confidence            567788887766      6777764 4555554       3345555443        7899999999999999999999


Q ss_pred             CCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCC
Q psy15246        170 NWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPS  208 (213)
Q Consensus       170 ~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~  208 (213)
                      |++|+|+|||+|++|||+|++.+|+++|+|.++|+..+.
T Consensus        68 g~~tvP~ifi~g~~iGG~d~l~~l~~~G~L~~~L~~a~~  106 (111)
T 3zyw_A           68 SWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAAE  106 (111)
T ss_dssp             TCCSSCEEEETTEEEECHHHHHHHHHTTCHHHHSCCCCC
T ss_pred             CCCCCCEEEECCEEEecHHHHHHHHHCCCHHHHHHhCcc
Confidence            999999999999999999999999999999999988765

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.72  E-value=3.3e-17  Score=137.75  Aligned_cols=101  Identities=21%  Similarity=0.354  Sum_probs=84.4

Q ss_pred             eEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |..++...+... +.++++++|.||||||++|+++.|.|+++++.+++ .++.++.+|++.+.  +++|+|+++||+++|
T Consensus       251 v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~  328 (361)
T 3uem_A          251 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFF  328 (361)
T ss_dssp             SEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEE
T ss_pred             cEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEE
Confidence            667777555554 47899999999999999999999999999999986 25999999999887  789999999999999


Q ss_pred             eCC--CCcccccCCCch-hHHHHHHHHh
Q psy15246         81 KNL--KPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        81 ~~g--~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      .+|  +...++.|.... +|.+||++..
T Consensus       329 ~~~~~~~~~~~~G~~~~~~l~~~l~~~~  356 (361)
T 3uem_A          329 PASADRTVIDYNGERTLDGFKKFLESGG  356 (361)
T ss_dssp             CSSSSCCCEECCSCSSHHHHHHHHTTTS
T ss_pred             ECCCCcceeEecCCCCHHHHHHHHHhcC
Confidence            655  556667776555 7999998764

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.55  E-value=5.2e-19  Score=127.61  Aligned_cols=92  Identities=26%  Similarity=0.384  Sum_probs=80.5

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeC--CCchhHHHhCCCccccEEEEE--eCCCC--
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIA--EDLPKLSLNYKVSAVPTFVIL--KNLKP--   85 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~--~~~~~l~~~~~I~~~Pti~~~--~~g~~--   85 (213)
                      ..++++++|+|||+||++|+.+.|.+   +++++.+++ ++.++.||+  +++.+++++|+|.++||+++|  ++|+.  
T Consensus        16 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~   94 (130)
T 2lst_A           16 QAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEE   94 (130)
Confidence            46789999999999999999999999   899988875 699999999  467899999999999999999  67888  


Q ss_pred             cccccCCCch-hHHHHHHHHhcc
Q psy15246         86 VDRVEGADPE-SLDKKLQNQAST  107 (213)
Q Consensus        86 ~~~~~g~~~~-~l~~~i~~~~~~  107 (213)
                      +.++.|.... +|.++|++.++.
T Consensus        95 ~~~~~G~~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A           95 VGRLFGSRPRAEFLKELRQVCVK  117 (130)
Confidence            7888887655 799999988753

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.71  E-value=4.7e-17  Score=140.50  Aligned_cols=90  Identities=19%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             ceEEeCCchhhhhhcC--CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC-------cEEEEEEeCCCchhHHHhCCCc
Q psy15246          2 SVVQISEELDVEKYGK--DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-------QVVFARCIAEDLPKLSLNYKVS   72 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~--~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~-------~v~~~~vd~~~~~~l~~~~~I~   72 (213)
                      .|++++++.+.+.+..  +++++|+|||+||++|+++.|.|+++++.+++.       .+.|+.||++++++++++|+|.
T Consensus        24 ~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~  103 (470)
T 3qcp_A           24 SVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDIN  103 (470)
T ss_dssp             TEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCC
T ss_pred             CcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCC
Confidence            3778888666666644  478999999999999999999999999999731       4999999999999999999999


Q ss_pred             cccEEEEEeCCC--CcccccC
Q psy15246         73 AVPTFVILKNLK--PVDRVEG   91 (213)
Q Consensus        73 ~~Pti~~~~~g~--~~~~~~g   91 (213)
                      ++||+++|++|+  ...++.|
T Consensus       104 ~~PTlilf~~gg~~~~~~y~G  124 (470)
T 3qcp_A          104 FVPRLFFFYPRDSCRSNEECG  124 (470)
T ss_dssp             SSCEEEEEEESSCCCTTSCCC
T ss_pred             ccCeEEEEECCCceEEEEeeC
Confidence            999999997543  3444555

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.71  E-value=4.9e-17  Score=141.69  Aligned_cols=103  Identities=23%  Similarity=0.367  Sum_probs=86.9

Q ss_pred             eEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC-cEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~-~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      +..++...+.+.+ .++++++|+|||+||++|+++.|.|+++++.+++. ++.++.+|++.+ +++++|+|.++||+++|
T Consensus       354 v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~  432 (481)
T 3f8u_A          354 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFS  432 (481)
T ss_dssp             SEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEE
T ss_pred             eEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEE
Confidence            4566665555544 56899999999999999999999999999999862 699999999998 89999999999999999


Q ss_pred             eCCCC--cccccCCCch-hHHHHHHHHhc
Q psy15246         81 KNLKP--VDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        81 ~~g~~--~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ++|..  ..++.|.... +|.++|++++.
T Consensus       433 ~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  461 (481)
T 3f8u_A          433 PANKKLNPKKYEGGRELSDFISYLQREAT  461 (481)
T ss_dssp             CTTCTTSCEECCSCCSHHHHHHHHHHHCS
T ss_pred             eCCCeEeeeEeCCCCCHHHHHHHHHHhcC
Confidence            98765  5566676555 79999999864

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.71  E-value=1.3e-17  Score=126.20  Aligned_cols=90  Identities=16%  Similarity=0.251  Sum_probs=75.5

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCchhH--------------------------H
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDLPKL--------------------------S   66 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~~~l--------------------------~   66 (213)
                      .++++++|+|||+||++|+++.+.+   .++.+.+.+ ++.++.||++++.++                          +
T Consensus        45 ~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (172)
T 3f9u_A           45 QHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQR  123 (172)
T ss_dssp             HTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             HcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHH
Confidence            6799999999999999999985544   556665554 699999999987665                          7


Q ss_pred             HhCCCccccEEEEE-eCCCCcccccCCCc-h-hHHHHHHHHhc
Q psy15246         67 LNYKVSAVPTFVIL-KNLKPVDRVEGADP-E-SLDKKLQNQAS  106 (213)
Q Consensus        67 ~~~~I~~~Pti~~~-~~g~~~~~~~g~~~-~-~l~~~i~~~~~  106 (213)
                      ++|+|.++||++++ ++|+.+.+..|... . ++.++|++.++
T Consensus       124 ~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          124 VKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             HHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHH
T ss_pred             HHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHH
Confidence            89999999999999 68999988889776 4 79999988764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.71  E-value=3.9e-17  Score=128.90  Aligned_cols=97  Identities=20%  Similarity=0.165  Sum_probs=81.1

Q ss_pred             EeCCchhhhhhcCCCeE-EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCC
Q psy15246          5 QISEELDVEKYGKDKTA-VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNL   83 (213)
Q Consensus         5 ~l~~~~~~~~~~~~~~~-vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g   83 (213)
                      .++++........++++ +|.||++||++|+++.|.+++++..++  ++.++.||++++++++++|+|.++||+++  +|
T Consensus       122 ~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G  197 (229)
T 2ywm_A          122 QLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND--YITSKVIDASENQDLAEQFQVVGVPKIVI--NK  197 (229)
T ss_dssp             SCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GG
T ss_pred             CCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC--CeEEEEEECCCCHHHHHHcCCcccCEEEE--CC
Confidence            34554444455555555 889999999999999999999999995  89999999999999999999999999988  88


Q ss_pred             CCcccccCCCch-hHHHHHHHHhc
Q psy15246         84 KPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        84 ~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      + +.++.|..+. +|.++|++.++
T Consensus       198 ~-~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          198 G-VAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             G-TEEEESCCCHHHHHHHHHHHHH
T ss_pred             E-EEEeeCCCCHHHHHHHHHHHhh
Confidence            8 5667787665 79999988764

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.70  E-value=1.2e-17  Score=126.27  Aligned_cols=85  Identities=11%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCC---CccccEEEEEeCC-CCcccccCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYK---VSAVPTFVILKNL-KPVDRVEGA   92 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~---I~~~Pti~~~~~g-~~~~~~~g~   92 (213)
                      ++++++|.|||+|||+|+++.|.++++++.++  ++.|+.||.+++++++++|.   |.++||+++|++| +.+.+. |.
T Consensus        53 ~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~-g~  129 (167)
T 1z6n_A           53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRF-VE  129 (167)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEE-ES
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCEEEEE-cC
Confidence            57899999999999999999999999999887  79999999999999999997   9999999999975 766666 44


Q ss_pred             CchhHHHHHHHH
Q psy15246         93 DPESLDKKLQNQ  104 (213)
Q Consensus        93 ~~~~l~~~i~~~  104 (213)
                      .+..+.+.+.++
T Consensus       130 ~p~~~~~~i~~~  141 (167)
T 1z6n_A          130 RPQAVLDGGPQA  141 (167)
T ss_dssp             SCHHHHHHCHHH
T ss_pred             CCHHHHHhHHHH
Confidence            555555555544

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.7e-17  Score=117.87  Aligned_cols=100  Identities=30%  Similarity=0.584  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHhcc------CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCCCC---ceEEeccCCHHHHHHH
Q psy15246         95 ESLDKKLQNQAST------MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVP---YDTFDILQDQEVREGL  165 (213)
Q Consensus        95 ~~l~~~i~~~~~~------~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~v~---~~~~d~~~~~~~~~~l  165 (213)
                      .++.++|++.+++      ++++|.. +.|++..       .++.++..+.        ++   |..+|+..+++.++.|
T Consensus         3 ~~~~~~v~~~i~~~~Vvvfsk~t~~~-p~Cp~C~-------~ak~lL~~~g--------v~~~~~~~~dv~~~~~~~~~l   66 (121)
T 3gx8_A            3 TEIRKAIEDAIESAPVVLFMKGTPEF-PKCGFSR-------ATIGLLGNQG--------VDPAKFAAYNVLEDPELREGI   66 (121)
T ss_dssp             HHHHHHHHHHHHSCSEEEEESBCSSS-BCTTHHH-------HHHHHHHHHT--------BCGGGEEEEECTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccCCEEEEEeccCCC-CCCccHH-------HHHHHHHHcC--------CCcceEEEEEecCCHHHHHHH
Confidence            3566777777765      5666653 5566555       3334444333        55   8899999999999999


Q ss_pred             HhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCCCC
Q psy15246        166 KIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSSD  210 (213)
Q Consensus       166 ~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~~~  210 (213)
                      ++++|++|+|||||+|++|||+|++.+|+++|+|.++|+..+...
T Consensus        67 ~~~sg~~tvP~vfI~g~~iGG~d~l~~l~~~G~L~~~L~~~g~~~  111 (121)
T 3gx8_A           67 KEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQALV  111 (121)
T ss_dssp             HHHHTCCSSCEEEETTEEEESHHHHHHHHHHTHHHHHHHHTTCBC
T ss_pred             HHHhCCCCCCeEEECCEEEecHHHHHHHHHcCChHHHHHHcCCCC
Confidence            999999999999999999999999999999999999998765443

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.68  E-value=1.3e-16  Score=139.81  Aligned_cols=102  Identities=21%  Similarity=0.277  Sum_probs=84.7

Q ss_pred             eEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC--CCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK--YSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~--~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      |.+++.+.+... ...+++++|+|||+||++|+++.|.|+++++.++  ..++.++.+|++.+... + |+|+++||+++
T Consensus       360 v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~  437 (504)
T 2b5e_A          360 VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIVL  437 (504)
T ss_dssp             EEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEEE
T ss_pred             ceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEEE
Confidence            677877555544 5678999999999999999999999999999876  23699999999987644 4 99999999999


Q ss_pred             EeCCCC--cccccCCCch-hHHHHHHHHhc
Q psy15246         80 LKNLKP--VDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~--~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |++|+.  ..++.|.... +|.++|++++.
T Consensus       438 ~~~G~~~~~~~~~G~~~~~~l~~~i~~~~~  467 (504)
T 2b5e_A          438 YPGGKKSESVVYQGSRSLDSLFDFIKENGH  467 (504)
T ss_dssp             ECCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             EeCCceecceEecCCCCHHHHHHHHHhcCC
Confidence            999975  6667776554 89999999863

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.68  E-value=9.5e-17  Score=119.53  Aligned_cols=89  Identities=19%  Similarity=0.316  Sum_probs=76.5

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCch-----------hHHHhCCCccccEEEEE
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDLP-----------KLSLNYKVSAVPTFVIL   80 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~~-----------~l~~~~~I~~~Pti~~~   80 (213)
                      .++++++|.|| |+||++|+++.|.+   .++.+.+.. ++.++.+|++...           +++++|+|.++||++++
T Consensus        45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~-~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~  123 (154)
T 2ju5_A           45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV-HLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFI  123 (154)
T ss_dssp             HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEE
T ss_pred             hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC-cEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEE
Confidence            45899999999 99999999999999   777766643 7999999998754           89999999999999999


Q ss_pred             -eCCCCcccccCCC--ch-hHHHHHHHHhc
Q psy15246         81 -KNLKPVDRVEGAD--PE-SLDKKLQNQAS  106 (213)
Q Consensus        81 -~~g~~~~~~~g~~--~~-~l~~~i~~~~~  106 (213)
                       ++|+.+.+. |..  .. ++.++|++.++
T Consensus       124 d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          124 DAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence             689988888 876  44 78999988764

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.67  E-value=1.7e-17  Score=125.05  Aligned_cols=92  Identities=15%  Similarity=0.239  Sum_probs=76.0

Q ss_pred             hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh-HHHhCCC--ccccEEEEE-eCCCCcccc
Q psy15246         14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK-LSLNYKV--SAVPTFVIL-KNLKPVDRV   89 (213)
Q Consensus        14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~-l~~~~~I--~~~Pti~~~-~~g~~~~~~   89 (213)
                      ...++++++|.|||+||++|+.+.|.|+++++.+.. ++.|+.||++.+.+ ++.+|++  .++||+++| ++|+.+.+.
T Consensus        42 ~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~  120 (164)
T 1sen_A           42 AAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEI  120 (164)
T ss_dssp             HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTC
T ss_pred             HHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEEEEE
Confidence            346789999999999999999999999998766553 56788888888777 8889988  669999999 699988888


Q ss_pred             cCC-----------CchhHHHHHHHHhc
Q psy15246         90 EGA-----------DPESLDKKLQNQAS  106 (213)
Q Consensus        90 ~g~-----------~~~~l~~~i~~~~~  106 (213)
                      .|.           ..++|.++|++.+.
T Consensus       121 ~G~~~~~~~~~~~~~~~~l~~~l~~~l~  148 (164)
T 1sen_A          121 INENGNPSYKYFYVSAEQVVQGMKEAQE  148 (164)
T ss_dssp             CCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred             eCCCCccchhcccCCHHHHHHHHHHHHH
Confidence            874           33478888888764

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.67  E-value=5.9e-16  Score=113.08  Aligned_cols=90  Identities=16%  Similarity=0.239  Sum_probs=78.6

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC---------------------------CCchhHHHh
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA---------------------------EDLPKLSLN   68 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~   68 (213)
                      .++++++|.||++||++|+.+.|.++++.+.+++ ++.++.|++                           +.+.+++++
T Consensus        27 ~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  105 (148)
T 2b5x_A           27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDA  105 (148)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHH
T ss_pred             cCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC-CcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHH
Confidence            4689999999999999999999999999999986 499999985                           446689999


Q ss_pred             CCCccccEEEEE-eCCCCcccccCCCc-hhHHHHHHHHhc
Q psy15246         69 YKVSAVPTFVIL-KNLKPVDRVEGADP-ESLDKKLQNQAS  106 (213)
Q Consensus        69 ~~I~~~Pti~~~-~~g~~~~~~~g~~~-~~l~~~i~~~~~  106 (213)
                      |+|.++|+++++ ++|+.+.+..|... ++|.++|++.++
T Consensus       106 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A          106 FENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             TCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             hCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence            999999999999 58888888888654 479999998874

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.66  E-value=6.2e-16  Score=111.48  Aligned_cols=86  Identities=19%  Similarity=0.324  Sum_probs=75.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------chhHHHhCCCccc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------LPKLSLNYKVSAV   74 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~I~~~   74 (213)
                      .+++++|.||++||++|+.+.|.++++.++++  ++.++.|+++.                      +.+++++|+|.++
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~  100 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ  100 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCC
Confidence            67899999999999999999999999999998  79999999877                      6789999999999


Q ss_pred             cEEEEEe-CCCCccccc---CCCch-hHHHHHHHHh
Q psy15246         75 PTFVILK-NLKPVDRVE---GADPE-SLDKKLQNQA  105 (213)
Q Consensus        75 Pti~~~~-~g~~~~~~~---g~~~~-~l~~~i~~~~  105 (213)
                      |++++++ +|+.+ ++.   |.... +|.++|++++
T Consensus       101 P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A          101 PAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             SEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            9999994 88877 777   76554 7999988764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.65  E-value=4.5e-16  Score=124.42  Aligned_cols=86  Identities=17%  Similarity=0.167  Sum_probs=74.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC---CCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSK---YSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGAD   93 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~---~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~   93 (213)
                      .++.+++.||||||++|+++.|.|++++..++   ..++.+..||++.+++++++|+|+++||+++  +|+.+  +.|..
T Consensus       137 ~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~~--~~G~~  212 (243)
T 2hls_A          137 KGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYLV--FVGVP  212 (243)
T ss_dssp             CSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCC
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEEE--EeCCC
Confidence            46678999999999999999999999999882   1279999999999999999999999999988  88754  56666


Q ss_pred             ch-hHHHHHHHHhc
Q psy15246         94 PE-SLDKKLQNQAS  106 (213)
Q Consensus        94 ~~-~l~~~i~~~~~  106 (213)
                      +. +|.++|.+.++
T Consensus       213 ~~~~l~~~l~~~~~  226 (243)
T 2hls_A          213 YEEDFLDYVKSAAE  226 (243)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhh
Confidence            54 89999999875

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.65  E-value=1.2e-15  Score=109.79  Aligned_cols=87  Identities=20%  Similarity=0.360  Sum_probs=75.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-----------------------chhHHHhCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-----------------------LPKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~I~~   73 (213)
                      .+++++|.||++||++|+.+.|.++++.+.++  ++.++.|+++.                       +.+++++|+|.+
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  101 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ  101 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCC
Confidence            67899999999999999999999999999998  78999999843                       578999999999


Q ss_pred             ccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         74 VPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        74 ~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|++++++ +|+.+ ++.|.... +|.++|+++++
T Consensus       102 ~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A          102 QPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             SSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             CceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence            99999995 88877 77786555 79999988764

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.65  E-value=9e-17  Score=112.49  Aligned_cols=74  Identities=16%  Similarity=0.230  Sum_probs=59.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC------CchhHHHhCCCccccEEEEEeCCCCccccc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE------DLPKLSLNYKVSAVPTFVILKNLKPVDRVE   90 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~------~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~   90 (213)
                      .+++++|.|||+||++|+++.|.|+++++.++       .||++      ++++++++|+|+++||+++  +|+.   +.
T Consensus        11 ~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~~   78 (106)
T 3kp8_A           11 LRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YT   78 (106)
T ss_dssp             HHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---EE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---ec
Confidence            35677999999999999999999999997765       34444      6789999999999999877  7863   56


Q ss_pred             CCCch-hHHHHHH
Q psy15246         91 GADPE-SLDKKLQ  102 (213)
Q Consensus        91 g~~~~-~l~~~i~  102 (213)
                      |.... +|.+++.
T Consensus        79 G~~~~~~l~~~~~   91 (106)
T 3kp8_A           79 GVRSLEALAVASG   91 (106)
T ss_dssp             SCCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHhC
Confidence            76655 6777764

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.65  E-value=3.6e-16  Score=110.48  Aligned_cols=50  Identities=22%  Similarity=0.263  Sum_probs=42.3

Q ss_pred             HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCC
Q psy15246        159 QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPS  208 (213)
Q Consensus       159 ~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~  208 (213)
                      ++.++.++++++++|+|++|++|++|||+|++.+++++|+|.++|+....
T Consensus        59 ~~~~~~l~~~~g~~tvP~ifi~g~~igG~~~~~~~~~~g~L~~~l~~~~~  108 (113)
T 3rhb_A           59 PQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANG  108 (113)
T ss_dssp             HHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHHHHTHHHHHHTC---
T ss_pred             HHHHHHHHHHhCCCCcCEEEECCEEEcCcHHHHHHHHcCCHHHHHHHHhh
Confidence            44556677778999999999999999999999999999999999987654

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=99.65  E-value=1.9e-16  Score=111.43  Aligned_cols=95  Identities=33%  Similarity=0.609  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHhcc------CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhh
Q psy15246         95 ESLDKKLQNQAST------MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIY  168 (213)
Q Consensus        95 ~~l~~~i~~~~~~------~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~  168 (213)
                      .++.++|++.+++      .+++|.. +.|++..       .++.++....        ++|..+|+..+++.++.|+++
T Consensus         5 ~~~~~~v~~~i~~~~Vvvy~k~t~~~-p~Cp~C~-------~ak~~L~~~g--------i~~~~~dI~~~~~~~~~l~~~   68 (109)
T 3ipz_A            5 PQLKDTLEKLVNSEKVVLFMKGTRDF-PMCGFSN-------TVVQILKNLN--------VPFEDVNILENEMLRQGLKEY   68 (109)
T ss_dssp             HHHHHHHHHHHTSSSEEEEESBCSSS-BSSHHHH-------HHHHHHHHTT--------CCCEEEEGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCEEEEEecCCCC-CCChhHH-------HHHHHHHHcC--------CCcEEEECCCCHHHHHHHHHH
Confidence            4677788887764      4555543 4455444       3344555443        899999999999999999999


Q ss_pred             cCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        169 SNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       169 ~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      ++++|+|++||||++|||+|++.+|+++|+|.++|+.
T Consensus        69 ~g~~tvP~ifi~g~~iGG~d~l~~l~~~G~L~~~L~~  105 (109)
T 3ipz_A           69 SNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEK  105 (109)
T ss_dssp             HTCSSSCEEEETTEEEECHHHHHHHHHHSHHHHHHHH
T ss_pred             HCCCCCCeEEECCEEEeCHHHHHHHHHcCcHHHHHHH
Confidence            9999999999999999999999999999999999864

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.64  E-value=1.5e-15  Score=112.02  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=78.0

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC------------------------chhHHHhCC--
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED------------------------LPKLSLNYK--   70 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~------------------------~~~l~~~~~--   70 (213)
                      ++++++|.||++||++|+.+.|.++++.+++++.++.++.|+++.                        ..+++++|+  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            689999999999999999999999999999975579999999863                        355788899  


Q ss_pred             CccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         71 VSAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        71 I~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +.++|+++++. +|+.+.++.|.... +|.++|++...
T Consensus       103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~  140 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHS  140 (151)
T ss_dssp             SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            99999999884 88888888887665 79999998864

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.64  E-value=3.4e-16  Score=102.43  Aligned_cols=73  Identities=16%  Similarity=0.199  Sum_probs=62.6

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCC--chhHH
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGAD--PESLD   98 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~--~~~l~   98 (213)
                      ..|.||++||++|+.+.|.++++++.+++ ++.++.+|   +.+++++|+|+++||+++  +|+.+.+  |..  .++|.
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~   73 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGI-DAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIK   73 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCC-ceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHH
Confidence            35899999999999999999999999986 79999998   789999999999999988  8887665  654  34676


Q ss_pred             HHH
Q psy15246         99 KKL  101 (213)
Q Consensus        99 ~~i  101 (213)
                      +++
T Consensus        74 ~~l   76 (77)
T 1ilo_A           74 KIL   76 (77)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            654

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.64  E-value=1.1e-15  Score=111.32  Aligned_cols=85  Identities=18%  Similarity=0.309  Sum_probs=74.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------------------chhHHHhCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------------------LPKLSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~I   71 (213)
                      .+++++|.||++||++|+.+.|.++++.+++++.++.++.|+++.                         +..++++|+|
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            789999999999999999999999999999985479999999854                         6689999999


Q ss_pred             ccccEEEEE-eCCCCcccccCCCch-hHHHHH
Q psy15246         72 SAVPTFVIL-KNLKPVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        72 ~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i  101 (213)
                      .++|+++++ ++|+.+.++.|.... +|.++|
T Consensus       113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            999999999 588888888887665 677765

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.64  E-value=1.8e-15  Score=112.84  Aligned_cols=91  Identities=16%  Similarity=0.308  Sum_probs=79.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhC---------------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNY---------------------------   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~---------------------------   69 (213)
                      .+++++|.||++||++|+.+.|.++++.+++++.++.++.|+++...+.+++|                           
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            67899999999999999999999999999998745999999999877777766                           


Q ss_pred             CCccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhcc
Q psy15246         70 KVSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAST  107 (213)
Q Consensus        70 ~I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~~  107 (213)
                      +|.++|+++++ ++|+.+.++.|.... ++.++|+++++.
T Consensus       113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  152 (165)
T 3or5_A          113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGA  152 (165)
T ss_dssp             CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            89999999999 588888888887655 799999999863

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.64  E-value=1.1e-16  Score=118.98  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=60.0

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHH--HcCCCcEEEEEEeCC-CchhHHHhCCCccccEEEEEe-CCCCccccc
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSK--QSKYSQVVFARCIAE-DLPKLSLNYKVSAVPTFVILK-NLKPVDRVE   90 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~--~~~~~~v~~~~vd~~-~~~~l~~~~~I~~~Pti~~~~-~g~~~~~~~   90 (213)
                      ..++++++|.|||+||++|+.+.|.+.+..+  .+.  +..|+.|+++ +..+++.+++|.++||+++|+ +|+.+.+..
T Consensus        41 ~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~--~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~  118 (151)
T 3ph9_A           41 QKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMA--QNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRADIA  118 (151)
T ss_dssp             HHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHH--HHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCTTCC
T ss_pred             HHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHh--hcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEEEEe
Confidence            4679999999999999999999999876422  221  1235555554 455678899999999999998 999999888


Q ss_pred             CC
Q psy15246         91 GA   92 (213)
Q Consensus        91 g~   92 (213)
                      |.
T Consensus       119 G~  120 (151)
T 3ph9_A          119 GR  120 (151)
T ss_dssp             CS
T ss_pred             CC
Confidence            86

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.63  E-value=6.1e-16  Score=115.36  Aligned_cols=91  Identities=19%  Similarity=0.344  Sum_probs=75.3

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe----------------------------CCCchhHHH
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI----------------------------AEDLPKLSL   67 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd----------------------------~~~~~~l~~   67 (213)
                      ..+++++|.||++||++|+.+.|.++++++++++.++.++.|+                            ++.+.++++
T Consensus        36 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  115 (164)
T 2h30_A           36 KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQ  115 (164)
T ss_dssp             CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred             hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHH
Confidence            4678999999999999999999999999998754355555554                            344678999


Q ss_pred             hCCCccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         68 NYKVSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        68 ~~~I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|+|.++||++++ ++|+.+.++.|.... +|.++|++.++
T Consensus       116 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          116 NLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             HcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            9999999999999 589888888886555 79999998864

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.63  E-value=2.4e-15  Score=111.04  Aligned_cols=90  Identities=12%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------------------chhHHHhCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------------------LPKLSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~I   71 (213)
                      .+++++|.||++||++|+.+.|.++++.+++++.++.++.|+++.                         +.+++++|+|
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            578999999999999999999999999999986459999999987                         5789999999


Q ss_pred             ccccEEEEE-eCCCCcccccCCCchhHHHHHHHHhccC
Q psy15246         72 SAVPTFVIL-KNLKPVDRVEGADPESLDKKLQNQASTM  108 (213)
Q Consensus        72 ~~~Pti~~~-~~g~~~~~~~g~~~~~l~~~i~~~~~~~  108 (213)
                      .++|+++++ ++|+.+.+.  ...+++.++|+++++..
T Consensus       108 ~~~P~~~lid~~G~i~~~~--~~~~~l~~~l~~l~~~~  143 (152)
T 2lrn_A          108 VGFPHIILVDPEGKIVAKE--LRGDDLYNTVEKFVNGA  143 (152)
T ss_dssp             CSSCEEEEECTTSEEEEEC--CCTTHHHHHHHHHHTSS
T ss_pred             CcCCeEEEECCCCeEEEee--CCHHHHHHHHHHHHhhc
Confidence            999999999 588877654  24457889998887643

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.63  E-value=2e-15  Score=111.09  Aligned_cols=90  Identities=14%  Similarity=0.290  Sum_probs=79.5

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-----------------------hHHHhCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-----------------------KLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~I~~   73 (213)
                      .+++++|.||++||++|+.+.|.++++.+.+++.++.++.|+++...                       +++++|+|.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            57899999999999999999999999999998656999999988764                       7899999999


Q ss_pred             ccEEEEEe-CCCCcccccCCCc-hhHHHHHHHHhc
Q psy15246         74 VPTFVILK-NLKPVDRVEGADP-ESLDKKLQNQAS  106 (213)
Q Consensus        74 ~Pti~~~~-~g~~~~~~~g~~~-~~l~~~i~~~~~  106 (213)
                      +|++++++ +|+.+.+..|... ++|.++|++.++
T Consensus       109 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~  143 (152)
T 2lja_A          109 IPRFILLDRDGKIISANMTRPSDPKTAEKFNELLG  143 (152)
T ss_dssp             SCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhc
Confidence            99999997 8988887777554 489999999874

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.63  E-value=1.4e-15  Score=112.06  Aligned_cols=90  Identities=21%  Similarity=0.299  Sum_probs=78.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------chhHHHhCCCccc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------LPKLSLNYKVSAV   74 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~I~~~   74 (213)
                      .+++++|.||++||++|+.+.|.+.++.+.+++.++.++.|+++.                      +.+++++|+|.++
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            678999999999999999999999999999875459999998865                      4579999999999


Q ss_pred             cEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         75 PTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        75 Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+++++ ++|+.+.++.|.... +|.++|++++.
T Consensus       105 P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~  138 (151)
T 2f9s_A          105 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKP  138 (151)
T ss_dssp             CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHh
Confidence            999999 588888888887555 79999999875

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=99.62  E-value=4.2e-15  Score=102.68  Aligned_cols=56  Identities=32%  Similarity=0.496  Sum_probs=47.2

Q ss_pred             CceEEeccCCHHHHHHHHhhc-CCCcccceEeCCeEeehHHHHHHHHHcCCchhhcc
Q psy15246        149 PYDTFDILQDQEVREGLKIYS-NWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD  204 (213)
Q Consensus       149 ~~~~~d~~~~~~~~~~l~~~~-~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~  204 (213)
                      +|..+|++.+++.++.+++.+ +++++|++||+|++|||+|++.+++++|+|.++|+
T Consensus        42 ~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l~~~~~~g~L~~~L~   98 (99)
T 3qmx_A           42 EFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIYALDGAGKLDPLLH   98 (99)
T ss_dssp             CCEEEECTTCHHHHHHHHHHTTTCCCSCEEEETTEEEESHHHHHHHHHTTCHHHHHT
T ss_pred             CCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCEEEeChHHHHHHHHcCCHHHHhc
Confidence            334456666666677777777 89999999999999999999999999999999986

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.62  E-value=3.4e-15  Score=110.81  Aligned_cols=90  Identities=14%  Similarity=0.139  Sum_probs=77.8

Q ss_pred             CCCeEEEEEEcCCCHHHHh-HHHHHHHHHHHcCCCcEEEEEEeC----------------------------CCchh---
Q psy15246         17 KDKTAVVHFYADWSDECKH-MNTLFDEMSKQSKYSQVVFARCIA----------------------------EDLPK---   64 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~-~~~~~~~l~~~~~~~~v~~~~vd~----------------------------~~~~~---   64 (213)
                      .+++++|.||++||++|+. +.|.++++.+++++.++.++.|++                            +....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            5899999999999999999 699999999999875699999985                            23334   


Q ss_pred             ---HHHhCCCccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         65 ---LSLNYKVSAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        65 ---l~~~~~I~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                         ++++|+|.++|+++++. +|+.+.++.|.... +|.+.|+++++
T Consensus       109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A          109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             hhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence               89999999999999996 88888888887666 79999999875

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.61  E-value=1.8e-15  Score=110.56  Aligned_cols=88  Identities=19%  Similarity=0.315  Sum_probs=75.1

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHc-CCCcEEEEEEeCCC-------------------------chhHHHhCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQS-KYSQVVFARCIAED-------------------------LPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~-~~~~v~~~~vd~~~-------------------------~~~l~~~~~   70 (213)
                      .+++++|.||++||++|+.+.|.+.++.+.+ ++.++.++.|+++.                         +..++++|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            6799999999999999999999999999999 65459999998876                         458999999


Q ss_pred             CccccEEEEE-eCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         71 VSAVPTFVIL-KNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        71 I~~~Pti~~~-~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      |.++|+++++ ++|+.+.+..  ...++.+.|+++++
T Consensus       112 v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          112 ILTLPTNILLSPTGKILARDI--QGEALTGKLKELLK  146 (148)
T ss_dssp             CCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHC-
T ss_pred             CCCcCEEEEECCCCeEEEecC--CHHHHHHHHHHHHc
Confidence            9999999999 5887766554  55579999988764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.61  E-value=3.7e-15  Score=110.49  Aligned_cols=90  Identities=11%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             CCCeEEEEEEcCCCHHHHhH-HHHHHHHHHHcCCCcEEEEEEeCC----------------------------Cch----
Q psy15246         17 KDKTAVVHFYADWSDECKHM-NTLFDEMSKQSKYSQVVFARCIAE----------------------------DLP----   63 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~-~~~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~----   63 (213)
                      .+++++|.||++||++|+.. .|.++++.+++++.++.++.|+++                            ...    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            58999999999999999996 999999999998657999999853                            222    


Q ss_pred             -hHHHhCCCccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         64 -KLSLNYKVSAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        64 -~l~~~~~I~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                       .+++.|+|.++|+++++. +|+.+.++.|.... +|.+.|+++++
T Consensus       107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  152 (158)
T 3eyt_A          107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLG  152 (158)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhc
Confidence             589999999999999995 88888888887665 79999999875

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.59  E-value=6.7e-15  Score=108.29  Aligned_cols=90  Identities=18%  Similarity=0.331  Sum_probs=78.1

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch----------------------hHHHhCCCccc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP----------------------KLSLNYKVSAV   74 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~----------------------~l~~~~~I~~~   74 (213)
                      .+++++|.||++||++|+.+.+.+.++.+.+++.++.++.|+++...                      +++++|+|.++
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            67899999999999999999999999999998645999999988655                      68899999999


Q ss_pred             cEEEEE-eCCCCcccccCCCc---hhHHHHHHHHhc
Q psy15246         75 PTFVIL-KNLKPVDRVEGADP---ESLDKKLQNQAS  106 (213)
Q Consensus        75 Pti~~~-~~g~~~~~~~g~~~---~~l~~~i~~~~~  106 (213)
                      |+++++ ++|+.+.+..|...   ++|.++|++.+.
T Consensus       107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~  142 (152)
T 3gl3_A          107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALG  142 (152)
T ss_dssp             SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHc
Confidence            999988 58888888888654   379999998864

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.59  E-value=9.4e-15  Score=104.87  Aligned_cols=87  Identities=24%  Similarity=0.326  Sum_probs=74.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC----------------------------CCchhHHHh
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA----------------------------EDLPKLSLN   68 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~----------------------------~~~~~l~~~   68 (213)
                      ++++++|.||++||++|+.+.+.++++.+.+++ ++.++.+++                            +.+.+++++
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   99 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGD-DYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLET   99 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT-TEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC-CcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHH
Confidence            689999999999999999999999999999775 799998853                            345679999


Q ss_pred             CCCccccEEEEE-eCCCCcccccCCCch-hHHHHHHHH
Q psy15246         69 YKVSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        69 ~~I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      |+|.++|+++++ ++|+.+.+..|.... ++.++|++.
T Consensus       100 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A          100 YGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             TTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             cCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            999999999999 589888888887665 688888764

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.58  E-value=1.2e-14  Score=107.98  Aligned_cols=88  Identities=19%  Similarity=0.290  Sum_probs=75.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------------chhHHHhCCCccccEE
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------------LPKLSLNYKVSAVPTF   77 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------------~~~l~~~~~I~~~Pti   77 (213)
                      .+++++|.||++||++|+.+.|.++++.+++++.++.++.|+++.                   +.+++++|+|.++|++
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~  119 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT  119 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence            578999999999999999999999999999985579999999987                   6799999999999998


Q ss_pred             EEE-eCCCCcccccCCCchhHHHHHHHH
Q psy15246         78 VIL-KNLKPVDRVEGADPESLDKKLQNQ  104 (213)
Q Consensus        78 ~~~-~~g~~~~~~~g~~~~~l~~~i~~~  104 (213)
                      +++ ++|+.+.++.|....+..+.++++
T Consensus       120 ~lid~~G~i~~~~~G~~~~~~~~~~~~~  147 (158)
T 3hdc_A          120 FIVDRKGIIRQRVTGGIEWDAPKVVSYL  147 (158)
T ss_dssp             EEECTTSBEEEEEESCCCTTSHHHHHHH
T ss_pred             EEEcCCCCEEEEEeCCCccchHHHHHHH
Confidence            888 588888888887765444444444

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.58  E-value=1.5e-15  Score=115.18  Aligned_cols=77  Identities=17%  Similarity=0.168  Sum_probs=65.0

Q ss_pred             hhhhhcCCCeEEEEEEcCCCHHHHhHHH-HH--HHHHHHcCCCcEEEEEEeCCCchhHHHhC--------CCccccEEEE
Q psy15246         11 DVEKYGKDKTAVVHFYADWSDECKHMNT-LF--DEMSKQSKYSQVVFARCIAEDLPKLSLNY--------KVSAVPTFVI   79 (213)
Q Consensus        11 ~~~~~~~~~~~vV~F~a~wC~~C~~~~~-~~--~~l~~~~~~~~v~~~~vd~~~~~~l~~~~--------~I~~~Pti~~   79 (213)
                      ......++++++|.|||+||++|+.|.+ .|  .++++.+.+ ++.+++||.++.+++++.|        +|.++||+++
T Consensus        32 ~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~  110 (173)
T 3ira_A           32 FEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNII  110 (173)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEE
T ss_pred             HHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceee
Confidence            3344578999999999999999999999 34  566776664 6899999999999999998        9999999999


Q ss_pred             Ee-CCCCccc
Q psy15246         80 LK-NLKPVDR   88 (213)
Q Consensus        80 ~~-~g~~~~~   88 (213)
                      |+ +|+++..
T Consensus       111 l~~dG~~v~~  120 (173)
T 3ira_A          111 MTPGKKPFFA  120 (173)
T ss_dssp             ECTTSCEEEE
T ss_pred             ECCCCCceee
Confidence            97 8887653

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.58  E-value=1e-14  Score=107.35  Aligned_cols=91  Identities=11%  Similarity=0.134  Sum_probs=78.0

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-----------------------CCchhHHHhCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-----------------------EDLPKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~I~~   73 (213)
                      .+++++|.||++||++|+.+.|.++++.+.+++.++.++.|+.                       +.+.++++.|+|.+
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            6889999999999999999999999999999864588887663                       45678999999999


Q ss_pred             ccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhcc
Q psy15246         74 VPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAST  107 (213)
Q Consensus        74 ~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~~  107 (213)
                      +|+++++ .+|+.+.++.|.... +|.++|++++..
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  142 (153)
T 2l5o_A          107 YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRN  142 (153)
T ss_dssp             SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred             cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            9999999 588888888886554 799999998863

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.58  E-value=2.3e-15  Score=101.53  Aligned_cols=75  Identities=16%  Similarity=0.172  Sum_probs=62.5

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKL  101 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i  101 (213)
                      ++.||++||++|+++.|.+++++.++      +..||++++++++++|+++ +||+++ .+|+.+.  .+.+..+|.++|
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~------~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~--g~~~~~~L~~~l   72 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA------FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD--WPFDAPRLRAWL   72 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC------EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE--SCCCHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh------eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe--CCCCHHHHHHHH
Confidence            68899999999999999999875532      5789999999999999998 999998 8898764  334555899999


Q ss_pred             HHHhc
Q psy15246        102 QNQAS  106 (213)
Q Consensus       102 ~~~~~  106 (213)
                      ++.+.
T Consensus        73 ~~~~~   77 (87)
T 1ttz_A           73 DAAPH   77 (87)
T ss_dssp             HTCC-
T ss_pred             HHHHH
Confidence            87653

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.58  E-value=3.3e-15  Score=104.35  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCchhHHH
Q psy15246         20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK   99 (213)
Q Consensus        20 ~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~   99 (213)
                      ..++.||++||++|+++.+.++++++++.   +.+..||++++++++.+|+++ +|++++|.+|+.+. ..+++.++|.+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~---i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v~-~g~~~~~~L~~  104 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW---FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKELC-HYFLDSDVIGA  104 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC---CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEEE-CSSCCCHHHHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC---CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEEE-ecCCCHHHHHH
Confidence            56899999999999999999999998865   788999999999999999997 99999999998763 23455567887


Q ss_pred             HH
Q psy15246        100 KL  101 (213)
Q Consensus       100 ~i  101 (213)
                      +|
T Consensus       105 ~L  106 (107)
T 2fgx_A          105 YL  106 (107)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.57  E-value=3.1e-15  Score=109.28  Aligned_cols=88  Identities=13%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh-------------------------HHHhCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK-------------------------LSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~-------------------------l~~~~~I   71 (213)
                      .+++++|.||++||++|+.+.|.++++.+.+++.++.++.|+++...+                         ++++|+|
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            678999999999999999999999999999986359999999997776                         9999999


Q ss_pred             ccccEEEEE-eCCCCcccccCCCch-hHHHHHHHH
Q psy15246         72 SAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        72 ~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      .++|+++++ ++|+.+.+..|.... ++.+.+.+.
T Consensus       110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~  144 (148)
T 3hcz_A          110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKS  144 (148)
T ss_dssp             CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHH
Confidence            999999999 588888777665332 344444443

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.55  E-value=3.3e-14  Score=104.75  Aligned_cols=90  Identities=17%  Similarity=0.269  Sum_probs=75.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-----------------------hhHHHhCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-----------------------PKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~I~~   73 (213)
                      .+++++|.||++||++|+.+.+.+.++.+.+++.++.++.|+++.+                       ..++++|+|.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            6799999999999999999999999999999865699999998875                       34889999999


Q ss_pred             ccEEEEE-eCCCCcccccCCC---chhHHHHHHHHhc
Q psy15246         74 VPTFVIL-KNLKPVDRVEGAD---PESLDKKLQNQAS  106 (213)
Q Consensus        74 ~Pti~~~-~~g~~~~~~~g~~---~~~l~~~i~~~~~  106 (213)
                      +|+++++ ++|+.+.++.|..   ..++.++|+++.+
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~  143 (154)
T 3kcm_A          107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELS  143 (154)
T ss_dssp             BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC--
T ss_pred             CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHH
Confidence            9977777 5888888888864   3478888888753

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.55  E-value=1.5e-14  Score=105.59  Aligned_cols=84  Identities=11%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHH---HHHHcCCCcEEEEEEeCCCchh------------------------HHHhC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDE---MSKQSKYSQVVFARCIAEDLPK------------------------LSLNY   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~---l~~~~~~~~v~~~~vd~~~~~~------------------------l~~~~   69 (213)
                      .+++++|.|||+||++|+.+.|.+.+   +.+.+++.++.++.|+.+...+                        +++.|
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            46999999999999999999999999   9998865479999999887643                        47889


Q ss_pred             CCccccEEEEEe-CCCCcccccCCCchhHHHHHH
Q psy15246         70 KVSAVPTFVILK-NLKPVDRVEGADPESLDKKLQ  102 (213)
Q Consensus        70 ~I~~~Pti~~~~-~g~~~~~~~g~~~~~l~~~i~  102 (213)
                      +|.++||+++++ +|+.+.+..  ..++|.++|+
T Consensus       110 ~v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~  141 (142)
T 3eur_A          110 DLRAIPTLYLLDKNKTVLLKDA--TLQKVEQYLA  141 (142)
T ss_dssp             CCTTCSEEEEECTTCBEEEEEE--CHHHHHHHHH
T ss_pred             CCCcCCeEEEECCCCcEEecCC--CHHHHHHHHh
Confidence            999999999996 777766544  3456777765

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.55  E-value=1.1e-14  Score=106.08  Aligned_cols=87  Identities=20%  Similarity=0.311  Sum_probs=70.1

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHH---HHHHcCCCcEEEEEEeCCCchhH------------------------HHhC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDE---MSKQSKYSQVVFARCIAEDLPKL------------------------SLNY   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~---l~~~~~~~~v~~~~vd~~~~~~l------------------------~~~~   69 (213)
                      .+++++|.||++||++|+++.|.+.+   +.+.+++.++.++.|+.+...+.                        ++.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            58999999999999999999999988   88888654699999998865544                        4489


Q ss_pred             CCccccEEEEEe-CCCCcccccCCCchhHHHHHHHHh
Q psy15246         70 KVSAVPTFVILK-NLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        70 ~I~~~Pti~~~~-~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      +|.++|++++++ +|+.+.  .+...++|.++|++..
T Consensus       106 ~v~~~P~~~lid~~G~i~~--~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          106 DIRATPTIYLLDGRKRVIL--KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CCCSSSEEEEECTTCBEEE--CSCCHHHHHHHHHC--
T ss_pred             CCCCCCeEEEECCCCCEEe--cCCCHHHHHHHHHHHc
Confidence            999999999995 777654  3455568999888764

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=99.54  E-value=5.5e-15  Score=107.61  Aligned_cols=94  Identities=31%  Similarity=0.585  Sum_probs=72.2

Q ss_pred             hHHHHHHHHhcc------CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhc
Q psy15246         96 SLDKKLQNQAST------MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYS  169 (213)
Q Consensus        96 ~l~~~i~~~~~~------~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~  169 (213)
                      ++.+.+++.+..      .+++|.. +.|++..       .++.+|....        ++|..+|+..+++.++.|++++
T Consensus        23 ~~~~~v~~~i~~~~Vvvy~ks~~~~-~~Cp~C~-------~ak~~L~~~g--------v~y~~vdI~~d~~~~~~L~~~~   86 (135)
T 2wci_A           23 TTIEKIQRQIAENPILLYMKGSPKL-PSCGFSA-------QAVQALAACG--------ERFAYVDILQNPDIRAELPKYA   86 (135)
T ss_dssp             HHHHHHHHHHHHCSEEEEESBCSSS-BSSHHHH-------HHHHHHHTTC--------SCCEEEEGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCEEEEEEecCCC-CCCccHH-------HHHHHHHHcC--------CceEEEECCCCHHHHHHHHHHH
Confidence            456666666543      3444442 3444433       3334444433        7899999999999999999999


Q ss_pred             CCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        170 NWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       170 ~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      +++|+|+|||+|++|||+|++.+|+++|+|.++|+.
T Consensus        87 G~~tvP~VfI~G~~iGG~d~l~~l~~~G~L~~~L~~  122 (135)
T 2wci_A           87 NWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE  122 (135)
T ss_dssp             TCCSSCEEEETTEEEESHHHHHHHHHHTHHHHHHHH
T ss_pred             CCCCcCEEEECCEEEEChHHHHHHHHCChHHHHHHH
Confidence            999999999999999999999999999999999864

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.54  E-value=1.8e-14  Score=106.26  Aligned_cols=85  Identities=21%  Similarity=0.302  Sum_probs=74.8

Q ss_pred             CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC---------------------------CCchhHHHhCCC
Q psy15246         19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA---------------------------EDLPKLSLNYKV   71 (213)
Q Consensus        19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~~~I   71 (213)
                      ++++|.||++||++|+.+.|.++++.+++   ++.++.|++                           +...+++++|+|
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKV  107 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSB
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCC
Confidence            89999999999999999999999999998   377788887                           366789999999


Q ss_pred             ccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         72 SAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        72 ~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      .++|+++++ ++|+.+.+..|.... +|.++|+++.+
T Consensus       108 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~  144 (154)
T 3ia1_A          108 LGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGA  144 (154)
T ss_dssp             CSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTC
T ss_pred             CcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccC
Confidence            999998888 589888888887555 79999999875

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.53  E-value=4e-14  Score=103.42  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=63.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCc------------------------hhHHHhCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDL------------------------PKLSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~I   71 (213)
                      .+++++|.||++||++|+.+.|.++++++++++ .++.++.|+++..                        .+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            578999999999999999999999999999983 3799999988753                        578999999


Q ss_pred             ccccEEEEEe--CCCCcccc
Q psy15246         72 SAVPTFVILK--NLKPVDRV   89 (213)
Q Consensus        72 ~~~Pti~~~~--~g~~~~~~   89 (213)
                      .++||++++.  +|+.+.+.
T Consensus       107 ~~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A          107 KSIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             CSSSEEEEEETTTCCEEESC
T ss_pred             CCCCEEEEEECCCCcEEecc
Confidence            9999999996  78766543

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.53  E-value=6.2e-14  Score=104.70  Aligned_cols=86  Identities=16%  Similarity=0.324  Sum_probs=72.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC------------------Cc----------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE------------------DL----------------   62 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~------------------~~----------------   62 (213)
                      .+++++|.||++||++|+.+.|.+.++.++++  ++.|+.|+++                  ..                
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSW  113 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTS
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCe
Confidence            67999999999999999999999999999998  7999999987                  34                


Q ss_pred             ------hhHHHhCCCccccEEEEEe-CCCCcccccCCC--chhHHHHHHHHhc
Q psy15246         63 ------PKLSLNYKVSAVPTFVILK-NLKPVDRVEGAD--PESLDKKLQNQAS  106 (213)
Q Consensus        63 ------~~l~~~~~I~~~Pti~~~~-~g~~~~~~~g~~--~~~l~~~i~~~~~  106 (213)
                            .+++++|+|.++|+++++. +|+.+.  .|..  ..+|.+.|+++++
T Consensus       114 ~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          114 IMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQG  164 (165)
T ss_dssp             EEEECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC--
T ss_pred             eEEeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHhc
Confidence                  3789999999999999995 777666  5544  4579999888753

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=5.2e-14  Score=103.60  Aligned_cols=88  Identities=23%  Similarity=0.368  Sum_probs=74.7

Q ss_pred             CCCeEEEEEEcCCCHH--HHhHHHHHHHHHHHc-CCCcEEEEEEeCCCch-------------------------hHHHh
Q psy15246         17 KDKTAVVHFYADWSDE--CKHMNTLFDEMSKQS-KYSQVVFARCIAEDLP-------------------------KLSLN   68 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~--C~~~~~~~~~l~~~~-~~~~v~~~~vd~~~~~-------------------------~l~~~   68 (213)
                      .+++++|.||++||++  |+...|.+.++.+++ ++.++.++.|+.+..+                         +++++
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            5789999999999999  999999999999999 6546999999988654                         78999


Q ss_pred             CCCccccEEEEE-eCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         69 YKVSAVPTFVIL-KNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        69 ~~I~~~Pti~~~-~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      |+|.++|+++++ ++|+.+.+..  ..+++.+.|+++++
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGKILAKNL--RGEELKKKIENIVE  148 (150)
T ss_dssp             TTCCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHHH
T ss_pred             cCCCccCeEEEECCCCEEEEccC--CHHHHHHHHHHHHh
Confidence            999999999999 4888766553  55578888887763

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.52  E-value=4.4e-14  Score=107.47  Aligned_cols=90  Identities=10%  Similarity=0.234  Sum_probs=74.5

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcE------EEEEEeCCC-chhHHHhC--------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQV------VFARCIAED-LPKLSLNY--------------------   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v------~~~~vd~~~-~~~l~~~~--------------------   69 (213)
                      .+++++|.||++||++|+.+.|.++++.+++++.++      .|+.|+++. .++..++|                    
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            578999999999999999999999999999875347      999999988 66666655                    


Q ss_pred             -----CCccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         70 -----KVSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        70 -----~I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                           +|.++|+++++ ++|+.+.++.|.... +|.++|+++++
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                 68999977777 588888888786554 79999988864

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.52  E-value=2.4e-14  Score=107.32  Aligned_cols=88  Identities=15%  Similarity=0.231  Sum_probs=70.5

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe-----------------------CCCchhHHHhCCC
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI-----------------------AEDLPKLSLNYKV   71 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~I   71 (213)
                      +.++++++|.||++||++|+.+.|.++++.++    ++.++.|+                       .+.+.+++++|+|
T Consensus        48 ~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  123 (168)
T 2b1k_A           48 LTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV  123 (168)
T ss_dssp             GCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTC
T ss_pred             hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCc
Confidence            35789999999999999999999999999876    35666666                       3456689999999


Q ss_pred             ccccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         72 SAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        72 ~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      .++|+++++ ++|+.+.++.|.... ++.++|++.+.
T Consensus       124 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  160 (168)
T 2b1k_A          124 YGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  160 (168)
T ss_dssp             CSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHH
T ss_pred             cccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            999966655 588888888886554 68777777653

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=99.52  E-value=3.8e-14  Score=98.75  Aligned_cols=58  Identities=66%  Similarity=1.188  Sum_probs=55.4

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      ++|..+|++.+++.++.++++++++++|++|++|++|||+|++.+|+++|+|.++|++
T Consensus        47 i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~d~~~~l~~~g~L~~~l~~  104 (105)
T 2yan_A           47 VEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRG  104 (105)
T ss_dssp             CCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEEEECHHHHHHHHHTTCHHHHHTT
T ss_pred             CCeEEEECCCCHHHHHHHHHHHCCCCCCeEEECCEEEeChHHHHHHHHCCCHHHHhcc
Confidence            7899999999999999999899999999999999999999999999999999999975

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.52  E-value=5.4e-14  Score=105.63  Aligned_cols=72  Identities=19%  Similarity=0.335  Sum_probs=63.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCc------------------------hhHHHhCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDL------------------------PKLSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~I   71 (213)
                      +++++||.|||+||++|+++.|.++++.+++++ .++.++.|+++..                        .+++++|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            579999999999999999999999999999984 4688998888766                        689999999


Q ss_pred             ccccEEEEEe-C-CCCccc
Q psy15246         72 SAVPTFVILK-N-LKPVDR   88 (213)
Q Consensus        72 ~~~Pti~~~~-~-g~~~~~   88 (213)
                      .++||+++++ + |+.+.+
T Consensus       127 ~~~Pt~~lid~~~G~iv~~  145 (165)
T 3s9f_A          127 ESIPTLIGLNADTGDTVTT  145 (165)
T ss_dssp             CSSSEEEEEETTTCCEEES
T ss_pred             CCCCEEEEEeCCCCEEEec
Confidence            9999999998 4 776654

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.52  E-value=4.8e-14  Score=103.30  Aligned_cols=73  Identities=18%  Similarity=0.271  Sum_probs=63.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCc------------------------hhHHHhCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDL------------------------PKLSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~I   71 (213)
                      .+++++|.||++||++|+.+.|.++++++++++ .++.++.|+++..                        .+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            578999999999999999999999999999983 3788999988753                        478999999


Q ss_pred             ccccEEEEEe--CCCCcccc
Q psy15246         72 SAVPTFVILK--NLKPVDRV   89 (213)
Q Consensus        72 ~~~Pti~~~~--~g~~~~~~   89 (213)
                      .++||+++++  +|+.+.+.
T Consensus       107 ~~~Pt~~lid~~~G~i~~~~  126 (146)
T 1o8x_A          107 ESIPTLIGVDADSGDVVTTR  126 (146)
T ss_dssp             CSSSEEEEEETTTCCEEESC
T ss_pred             CCCCEEEEEECCCCeEEEec
Confidence            9999999997  78766543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.51  E-value=4.2e-14  Score=104.30  Aligned_cols=87  Identities=22%  Similarity=0.343  Sum_probs=71.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-----------------------CchhHHHhCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-----------------------DLPKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-----------------------~~~~l~~~~~I~~   73 (213)
                      .+++++|.||++||++|+.+.|.++++.++ .  ++.++.|+++                       .+.+++++|+|.+
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  117 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD-K--RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG  117 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-T--TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc-C--CeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCc
Confidence            488999999999999999999999999877 3  6888887753                       3557899999999


Q ss_pred             ccEEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         74 VPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        74 ~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|+++++ ++|+.+.++.|.... ++.++|+++++
T Consensus       118 ~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A          118 VPETFVVGREGTIVYKLVGPITPDNLRSVLLPQME  152 (156)
T ss_dssp             SCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             cCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence            9977777 588888888887554 78888887764

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.51  E-value=5.2e-14  Score=104.17  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh-----------------------HHHhCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK-----------------------LSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~-----------------------l~~~~~I~~   73 (213)
                      .+++++|.||++||++|+...|.+.++.+++++.++.++.|+++...+                       ++++|+|.+
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  113 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN  113 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence            478999999999999999999999999999986459999999887654                       889999999


Q ss_pred             ccEEEEEe-CCCCcccccCCCch
Q psy15246         74 VPTFVILK-NLKPVDRVEGADPE   95 (213)
Q Consensus        74 ~Pti~~~~-~g~~~~~~~g~~~~   95 (213)
                      +|+++++. +|+.+.+..|....
T Consensus       114 ~P~~~lid~~G~i~~~~~g~~~~  136 (152)
T 2lrt_A          114 LPSVFLVNRNNELSARGENIKDL  136 (152)
T ss_dssp             CSEEEEEETTTEEEEETTTCSCH
T ss_pred             CceEEEECCCCeEEEecCCHHHH
Confidence            99999995 88888877776543

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.50  E-value=8.3e-14  Score=101.67  Aligned_cols=85  Identities=12%  Similarity=0.197  Sum_probs=69.5

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc--------------------------hhHHHhCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL--------------------------PKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~--------------------------~~l~~~~~   70 (213)
                      .+++++|.||++||++|+.+.|.+.++.+++++.++.++.|+.+..                          .++++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            5789999999999999999999999999999865799999987743                          35789999


Q ss_pred             CccccEEEEEe-CCCCcccccCCCchhHHHHHHH
Q psy15246         71 VSAVPTFVILK-NLKPVDRVEGADPESLDKKLQN  103 (213)
Q Consensus        71 I~~~Pti~~~~-~g~~~~~~~g~~~~~l~~~i~~  103 (213)
                      |.++|+++++. +|+.+.+.  ...+++.+.|++
T Consensus       111 v~~~P~~~lid~~G~i~~~~--~~~~~l~~~l~~  142 (143)
T 4fo5_A          111 LRKGFKNFLINDEGVIIAAN--VTPEKLTEILKA  142 (143)
T ss_dssp             GGGCCCEEEECTTSBEEEES--CCHHHHHHHHTC
T ss_pred             CCCCCcEEEECCCCEEEEcc--CCHHHHHHHHHh
Confidence            99999999887 78776543  344567666643

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.50  E-value=5.9e-14  Score=102.33  Aligned_cols=73  Identities=15%  Similarity=0.324  Sum_probs=63.1

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCc------------------------hhHHHhCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDL------------------------PKLSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~I   71 (213)
                      .+++++|.||++||++|+.+.|.++++++++++ .++.++.|+++..                        .+++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            578999999999999999999999999999872 3788888888763                        468999999


Q ss_pred             ccccEEEEEe--CCCCcccc
Q psy15246         72 SAVPTFVILK--NLKPVDRV   89 (213)
Q Consensus        72 ~~~Pti~~~~--~g~~~~~~   89 (213)
                      .++||+++++  +|+.+.+.
T Consensus       107 ~~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A          107 ESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             CSSSEEEEEETTTCCEEESC
T ss_pred             CCCCEEEEEECCCCeEEecc
Confidence            9999999998  78766543

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.50  E-value=2.2e-13  Score=103.95  Aligned_cols=88  Identities=11%  Similarity=0.160  Sum_probs=74.5

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-----------------------------CCchhHHH
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-----------------------------EDLPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-----------------------------~~~~~l~~   67 (213)
                      .+++++|.||++||++|++..|.++++.+++++. +.++.|++                             +.+.++++
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  110 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAK  110 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence            5799999999999999999999999999999974 99999988                             34567999


Q ss_pred             hCCCccccEEEEEe-CCCCcccccCC-----------CchhHHHHHHHHhcc
Q psy15246         68 NYKVSAVPTFVILK-NLKPVDRVEGA-----------DPESLDKKLQNQAST  107 (213)
Q Consensus        68 ~~~I~~~Pti~~~~-~g~~~~~~~g~-----------~~~~l~~~i~~~~~~  107 (213)
                      +|+|.++|+++++. +|+.+.+  |.           +.++|.+.|+++++.
T Consensus       111 ~~~v~~~P~~~lid~~G~i~~~--g~~~~~~~~~g~~~~~~l~~~i~~ll~~  160 (188)
T 2cvb_A          111 AYRALRTPEVFLFDERRLLRYH--GRVNDNPKDPSKVQSHDLEAAIEALLRG  160 (188)
T ss_dssp             HTTCCEESEEEEECTTCBEEEE--ECSSSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred             HcCCCCCCeEEEECCCCcEEEE--EecCCccccccccCHHHHHHHHHHHHcC
Confidence            99999999999995 7776654  32           345799999998753

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.48  E-value=3.2e-14  Score=99.86  Aligned_cols=62  Identities=58%  Similarity=1.093  Sum_probs=58.1

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCCC
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSS  209 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~~  209 (213)
                      ++|..+|++.+++.++.++++++++|+|+|||+|++|||+|++.+|+++|+|.++|+..+..
T Consensus        45 i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi~g~~igG~d~l~~l~~~g~L~~~L~~a~~p  106 (109)
T 1wik_A           45 VEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKGESGP  106 (109)
T ss_dssp             SCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEECHHHHHHHHHHTCSHHHHHTCCSC
T ss_pred             CCeEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEcCHHHHHHHHHCCCHHHHHhcccCC
Confidence            88999999999999999999999999999999999999999999999999999999876543

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.48  E-value=1.3e-13  Score=105.87  Aligned_cols=91  Identities=20%  Similarity=0.270  Sum_probs=75.1

Q ss_pred             CCC-eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-----------------------------CCchhHH
Q psy15246         17 KDK-TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-----------------------------EDLPKLS   66 (213)
Q Consensus        17 ~~~-~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-----------------------------~~~~~l~   66 (213)
                      .++ +++|.||++||++|+.+.|.++++.+++++.++.++.|++                             +.+.+++
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVA  123 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHH
Confidence            344 6999999999999999999999999999853589999988                             3456799


Q ss_pred             HhCCCccccEEEEEe-CCCCccc---------ccCC-CchhHHHHHHHHhcc
Q psy15246         67 LNYKVSAVPTFVILK-NLKPVDR---------VEGA-DPESLDKKLQNQAST  107 (213)
Q Consensus        67 ~~~~I~~~Pti~~~~-~g~~~~~---------~~g~-~~~~l~~~i~~~~~~  107 (213)
                      ++|+|.++|+++++. +|+.+.+         +.|. +.++|.+.|+++++.
T Consensus       124 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~  175 (196)
T 2ywi_A          124 KAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEG  175 (196)
T ss_dssp             HHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHT
T ss_pred             HHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcC
Confidence            999999999999995 7887765         3454 445899999998754

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=99.47  E-value=1.1e-13  Score=98.26  Aligned_cols=62  Identities=19%  Similarity=0.339  Sum_probs=58.4

Q ss_pred             CCceEEeccCCHHHHHHHHhhc--------CCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCCC
Q psy15246        148 VPYDTFDILQDQEVREGLKIYS--------NWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSS  209 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~--------~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~~  209 (213)
                      +.|.++|++.+++.++++.+.+        |.+|+|||||+|++|||+|++.+|++.|+|.++|...|..
T Consensus        31 V~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~~~l~e~g~L~~lL~~~~~~  100 (121)
T 1u6t_A           31 IGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAPP  100 (121)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHHHHHHHTTCHHHHHTCCCCT
T ss_pred             CceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHHHHhhhhChHHHHHcCCCCC
Confidence            8999999999999999999777        8999999999999999999999999999999999887764

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.47  E-value=4.4e-13  Score=102.08  Aligned_cols=90  Identities=16%  Similarity=0.266  Sum_probs=75.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-----hhHHHhCCCc-------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-----PKLSLNYKVS-------------------   72 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-----~~l~~~~~I~-------------------   72 (213)
                      .+++++|.||++||++|+.+.|.++++.+++++.++.++.|+++..     .++++++++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            5789999999999999999999999999999854799999988765     4567777774                   


Q ss_pred             ----cccEEEEE-eCCCCcccccCCCc---hhHHHHHHHHhc
Q psy15246         73 ----AVPTFVIL-KNLKPVDRVEGADP---ESLDKKLQNQAS  106 (213)
Q Consensus        73 ----~~Pti~~~-~~g~~~~~~~g~~~---~~l~~~i~~~~~  106 (213)
                          ++|+++++ ++|+.+.++.|...   +++.++|+++++
T Consensus       139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  180 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  180 (186)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhc
Confidence                89999999 58888888888653   479999998874

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.46  E-value=8.3e-15  Score=103.42  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-----hhHHHhCCCccccEEEEEeCCCCcccccC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-----PKLSLNYKVSAVPTFVILKNLKPVDRVEG   91 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-----~~l~~~~~I~~~Pti~~~~~g~~~~~~~g   91 (213)
                      +++.+++ ||++||++|+++.|.++++...     +.++.||.+.+     .+++++|++.++||+  |.+|+.+..+.|
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~-----~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~~~~   89 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGAS-----YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGGCDT   89 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHHHHHHHHTCC-----CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEECHHH
T ss_pred             cCCCEEE-EECCCChhHHHHHHHHHHcCCC-----eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECChHH
Confidence            3456666 9999999999999999998543     45666666665     569999999999999  568987776666


Q ss_pred             CC----chhHHHHHHHH
Q psy15246         92 AD----PESLDKKLQNQ  104 (213)
Q Consensus        92 ~~----~~~l~~~i~~~  104 (213)
                      ..    ..+|.++|++.
T Consensus        90 ~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           90 VVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHHHTTCHHHHHHHT
T ss_pred             HHHHHhCChHHHHHHHc
Confidence            53    33688888775

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.46  E-value=1.8e-13  Score=94.89  Aligned_cols=44  Identities=25%  Similarity=0.453  Sum_probs=38.2

Q ss_pred             HHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        162 REGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       162 ~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      ++.+.+..+++++|++|++|+++||+|++.+++++|+|.++|+.
T Consensus        57 ~~~l~~~~g~~~vP~i~~~g~~i~g~~~~~~~~~~g~L~~~l~~  100 (105)
T 1kte_A           57 QDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQ  100 (105)
T ss_dssp             HHHHHHHHSCCCSCEEEETTEEEESHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHhCCCCcCeEEECCEEEeccHHHHHHHHCCcHHHHHHH
Confidence            34455556788999999999999999999999999999999864

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=99.46  E-value=1.4e-13  Score=93.70  Aligned_cols=58  Identities=22%  Similarity=0.353  Sum_probs=54.3

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCC--CcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNW--PTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~--pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      ++|..+|+..+++.++.+++.+|+  .|+|||||+|++|||+|++.+|+++|+|.++|+.
T Consensus        33 i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l~~l~~~g~L~~~l~~   92 (93)
T 1t1v_A           33 IQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAVEQDTLQEFLKL   92 (93)
T ss_dssp             CCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHHHHHHHTTCHHHHTTC
T ss_pred             CceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHHHHHHHhcCCHHHHhCC
Confidence            789999999999999999998895  4999999999999999999999999999999964

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=99.45  E-value=6.8e-14  Score=100.79  Aligned_cols=61  Identities=26%  Similarity=0.363  Sum_probs=53.7

Q ss_pred             CCceEEeccCC---HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCC
Q psy15246        148 VPYDTFDILQD---QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPS  208 (213)
Q Consensus       148 v~~~~~d~~~~---~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~  208 (213)
                      ++|..+|++.+   ++.++.+++++|++|+|||||+|++|||+|++.+|+++|+|.++|+..+.
T Consensus        42 v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~G~~IGG~ddl~~l~~~G~L~~lL~~~g~  105 (127)
T 3l4n_A           42 PNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQVWSD  105 (127)
T ss_dssp             SCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEECCCHHHHHHHHHTTCHHHHHHHTCT
T ss_pred             CCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEECCEEEcCHHHHHHHHHCCCHHHHHHHhcC
Confidence            56777788764   56788899899999999999999999999999999999999999976654

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.2e-13  Score=97.32  Aligned_cols=62  Identities=19%  Similarity=0.288  Sum_probs=57.3

Q ss_pred             CCceEEeccCCHHHHHHHHhhc--------CCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCCC
Q psy15246        148 VPYDTFDILQDQEVREGLKIYS--------NWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPSS  209 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~--------~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~~  209 (213)
                      ++|..+|+..+++.++.++...        +++|+|||||+|++|||+|++.+|+++|+|.++|+..|..
T Consensus        39 i~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~iGG~d~l~~l~~~g~L~~~L~~~~~~  108 (111)
T 2ct6_A           39 IEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLGLKSGP  108 (111)
T ss_dssp             CCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEEEEHHHHHHHHTTTCHHHHHTCCSSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEEEeCHHHHHHHHHcCCHHHHHcCCCCC
Confidence            7899999999999999998774        8999999999999999999999999999999999887653

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.44  E-value=1.5e-13  Score=94.90  Aligned_cols=82  Identities=12%  Similarity=0.210  Sum_probs=67.5

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--CchhHHHhCCCccccEEEEEeCCCCcccccCCC
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE--DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGAD   93 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~   93 (213)
                      ....+.++.|+++||++|+++.+.+++++.     ++.|..+|++  ++++++++|+ .++|++  +.+|+.+ ...|++
T Consensus        13 ~~~~~~v~~f~~~~C~~C~~~~~~L~~l~~-----~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~~   83 (100)
T 1wjk_A           13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKD-----RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL-MMHRVN   83 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSS-----SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE-EESSCC
T ss_pred             cCCCCEEEEEeCCCCcchHHHHHHHHHhhh-----CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE-EecCCC
Confidence            345678899999999999999999887643     4789999998  7899999999 999986  5688764 456777


Q ss_pred             chhHHHHHHHHhc
Q psy15246         94 PESLDKKLQNQAS  106 (213)
Q Consensus        94 ~~~l~~~i~~~~~  106 (213)
                      ..+|.++|++++.
T Consensus        84 ~~~l~~~l~~~~~   96 (100)
T 1wjk_A           84 TSKLEKQLRKLSG   96 (100)
T ss_dssp             HHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHh
Confidence            7789999987753

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.43  E-value=4e-13  Score=101.86  Aligned_cols=86  Identities=17%  Similarity=0.264  Sum_probs=70.5

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-----------------------CCchhHHHhCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-----------------------EDLPKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~I~~   73 (213)
                      .+++++|.||++||++|+.+.|.++++.++    ++.++.|++                       +.+..+++.|+|.+
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  132 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYG  132 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCC
Confidence            578999999999999999999999999886    366777664                       34567899999999


Q ss_pred             ccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         74 VPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        74 ~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|+++++. +|+.+.++.|.... ++.+.|++.++
T Consensus       133 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  167 (176)
T 3kh7_A          133 APETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQ  167 (176)
T ss_dssp             SCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            99888775 88888888887554 68888877764

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.14  E-value=1.3e-14  Score=107.84  Aligned_cols=89  Identities=13%  Similarity=0.243  Sum_probs=72.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHH-HHHHcC-CCcEEEEEEeCCCchhHHHhCC------------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDE-MSKQSK-YSQVVFARCIAEDLPKLSLNYK------------------------   70 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~-l~~~~~-~~~v~~~~vd~~~~~~l~~~~~------------------------   70 (213)
                      .+++++|.||++||++|+.+.|.+++ +.+.++ +.++.++.|+++...+..++|.                        
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            57899999999999999999999998 888877 4479999998876655444443                        


Q ss_pred             CccccEEEEE-eCCCCcccccCCCchhHHHHHHHHh
Q psy15246         71 VSAVPTFVIL-KNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        71 I~~~Pti~~~-~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      +.++|+++++ ++|+.+.+..|.+..++.+++++..
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l~  147 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRLYNEEEFASLVQQIN  147 (159)
Confidence            6779999999 6899888888877667777777664

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.42  E-value=1.5e-12  Score=102.08  Aligned_cols=91  Identities=10%  Similarity=0.137  Sum_probs=73.7

Q ss_pred             CCC-eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-----------------------------CCchhHH
Q psy15246         17 KDK-TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-----------------------------EDLPKLS   66 (213)
Q Consensus        17 ~~~-~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-----------------------------~~~~~l~   66 (213)
                      .++ +++|.||++||++|+...|.++++.+++++.++.++.|++                             +...+++
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  136 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVA  136 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHH
T ss_pred             CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHH
Confidence            355 5999999999999999999999999999875699999998                             3456899


Q ss_pred             HhCCCccccEEEEEe-CCCCccccc----------CCCchhHHHHHHHHhcc
Q psy15246         67 LNYKVSAVPTFVILK-NLKPVDRVE----------GADPESLDKKLQNQAST  107 (213)
Q Consensus        67 ~~~~I~~~Pti~~~~-~g~~~~~~~----------g~~~~~l~~~i~~~~~~  107 (213)
                      +.|+|.++|++++++ +|+.+.+..          ..+..+|.+.|+++++.
T Consensus       137 ~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~  188 (218)
T 3u5r_E          137 KAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKG  188 (218)
T ss_dssp             HHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTT
T ss_pred             HHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcC
Confidence            999999999999995 777653211          12235799999998753

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.42  E-value=8e-13  Score=98.21  Aligned_cols=91  Identities=12%  Similarity=0.128  Sum_probs=72.9

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCccccEEEEEe-C-CCCccc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAED--LPKLSLNYKVSAVPTFVILK-N-LKPVDR   88 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~~~~-~-g~~~~~   88 (213)
                      +.+++++|+||++||..|+.|....   .++++.+.. ++.++++|.+.  +..++++|++.++|+++++. + |+.+..
T Consensus        40 ~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~  118 (153)
T 2dlx_A           40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVE  118 (153)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             HcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeee
Confidence            5689999999999999999997654   445555533 68899999875  45688999999999999997 4 777877


Q ss_pred             ccCCCchhHHHHHHHHhcc
Q psy15246         89 VEGADPESLDKKLQNQAST  107 (213)
Q Consensus        89 ~~g~~~~~l~~~i~~~~~~  107 (213)
                      ..|.+++++.+.|++.+..
T Consensus       119 ~~g~~~~~fl~~L~~~l~~  137 (153)
T 2dlx_A          119 WHQLDVSSFLDQVTGFLGE  137 (153)
T ss_dssp             ESSCCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHh
Confidence            7786666888888887754

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.41  E-value=7e-14  Score=114.03  Aligned_cols=75  Identities=17%  Similarity=0.220  Sum_probs=56.7

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-CCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHH
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLD   98 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~   98 (213)
                      .+|.||||||+||++++|.|++++++++  .+.+.++|. +++++++++|+|+++||+++  +|+.   +.|..+. +|.
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~--~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~~---~~G~~~~~~L~  272 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQVP--YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLEALA  272 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGSC--EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTEE---EESCCCHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHcC--EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCEE---ecCCCCHHHHH
Confidence            3689999999999999999999997765  222222223 34889999999999999554  8863   6676665 677


Q ss_pred             HHHH
Q psy15246         99 KKLQ  102 (213)
Q Consensus        99 ~~i~  102 (213)
                      +++.
T Consensus       273 ~~l~  276 (291)
T 3kp9_A          273 VASG  276 (291)
T ss_dssp             HHTC
T ss_pred             HHHC
Confidence            7764

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=99.40  E-value=6.4e-14  Score=99.10  Aligned_cols=58  Identities=28%  Similarity=0.359  Sum_probs=52.8

Q ss_pred             CCceEEeccC--C-HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        148 VPYDTFDILQ--D-QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       148 v~~~~~d~~~--~-~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      ++|..+|++.  + .+.++.+++.+|++|+|++||+|++|||+|++.+|+++|+|.++|+.
T Consensus        42 i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l~~l~~~G~L~~~l~~  102 (114)
T 3h8q_A           42 VECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE  102 (114)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHHHHTHHHHHHHS
T ss_pred             CCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHHHHHHHCCCHHHHhcC
Confidence            7899999985  3 56778888889999999999999999999999999999999999984

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.07  E-value=4.7e-14  Score=102.56  Aligned_cols=74  Identities=18%  Similarity=0.348  Sum_probs=62.2

Q ss_pred             CCC-eEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCc-------------------------hhHHHh
Q psy15246         17 KDK-TAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDL-------------------------PKLSLN   68 (213)
Q Consensus        17 ~~~-~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~-------------------------~~l~~~   68 (213)
                      .++ +++|.||++||++|+.+.|.+++++++++.  .++.++.|+++..                         .+++++
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            466 999999999999999999999999998831  2688888887754                         378999


Q ss_pred             CCCccccEEEEEe-CCCCccccc
Q psy15246         69 YKVSAVPTFVILK-NLKPVDRVE   90 (213)
Q Consensus        69 ~~I~~~Pti~~~~-~g~~~~~~~   90 (213)
                      |+|.++|++++++ +|+.+.+..
T Consensus       104 ~~v~~~P~~~lid~~G~i~~~~~  126 (143)
T 2lus_A          104 YGITGIPALVIVKKDGTLISMNG  126 (143)
Confidence            9999999999997 888776643

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.36  E-value=5.8e-13  Score=87.92  Aligned_cols=62  Identities=19%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-CchhHHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-DLPKLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-~~~~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.||++||++|+++.+.++++.+++.. .+.++.||.+ ++.+++++||++++||+++  +|+.+
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~   66 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKY-TVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAF   66 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTE-EEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCC-eEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEE
Confidence            6789999999999999999999877653 5666666665 5788999999999999877  77643

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.35  E-value=1.4e-12  Score=86.74  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=61.6

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch----hHHHhCC--CccccEEEEEeCCCCcccccCCCch
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP----KLSLNYK--VSAVPTFVILKNLKPVDRVEGADPE   95 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~----~l~~~~~--I~~~Pti~~~~~g~~~~~~~g~~~~   95 (213)
                      ++.|+++||++|+++.+.+++++.+++  ++.+..+|+++++    +++++++  +.++|++  |.+|+.+.   |  ..
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~--~~   73 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---G--YT   73 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---S--SH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC--CceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---C--HH
Confidence            678999999999999999999998877  6899999987654    8999999  9999998  45786543   3  25


Q ss_pred             hHHHHHHHHh
Q psy15246         96 SLDKKLQNQA  105 (213)
Q Consensus        96 ~l~~~i~~~~  105 (213)
                      +|.+++++.+
T Consensus        74 ~l~~~~~~~~   83 (85)
T 1ego_A           74 DFAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            7888777654

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.34  E-value=2.9e-12  Score=95.19  Aligned_cols=90  Identities=7%  Similarity=0.077  Sum_probs=73.4

Q ss_pred             CCCeEEEEEEcCCCHH-HHhHHHHHHHHHHHcCC----CcEEEEEEeCCCc----------------------------h
Q psy15246         17 KDKTAVVHFYADWSDE-CKHMNTLFDEMSKQSKY----SQVVFARCIAEDL----------------------------P   63 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~-C~~~~~~~~~l~~~~~~----~~v~~~~vd~~~~----------------------------~   63 (213)
                      .+++++|.||++||++ |+...|.++++.+++++    .++.++.|+++..                            .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            5789999999999998 99999999999988752    2788888887642                            1


Q ss_pred             hHHHhCCCcccc---------------EEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         64 KLSLNYKVSAVP---------------TFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        64 ~l~~~~~I~~~P---------------ti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +++++|+|...|               +++++ ++|+.+.++.|.... +|.+.|+++++
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            488899999999               66666 589888888776554 79999988875

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.33  E-value=5.4e-12  Score=94.03  Aligned_cols=75  Identities=15%  Similarity=0.073  Sum_probs=65.8

Q ss_pred             CCCe-EEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCcc
Q psy15246         17 KDKT-AVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~-~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~   73 (213)
                      .++. ++|.|| ++||++|+...|.+.++.+++++.++.++.|+.+                     ...+++++|++.+
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKG  106 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCC
Confidence            4565 999999 9999999999999999999998646999999887                     5668999999999


Q ss_pred             ----ccEEEEEe-CCCCcccccC
Q psy15246         74 ----VPTFVILK-NLKPVDRVEG   91 (213)
Q Consensus        74 ----~Pti~~~~-~g~~~~~~~g   91 (213)
                          +|+++++. +|+.+..+.|
T Consensus       107 ~~~~~P~~~lid~~G~i~~~~~g  129 (161)
T 3drn_A          107 FILPARITFVIDKKGIIRHIYNS  129 (161)
T ss_dssp             SSSCCCEEEEECTTSBEEEEEEC
T ss_pred             cCcccceEEEECCCCEEEEEEec
Confidence                99999885 8888887777

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.33  E-value=1.2e-12  Score=97.99  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=71.0

Q ss_pred             CCCeEEEEEEcCCCHH-HHhHHHHHHHHHHHcCCC---cEEEEEEeCCCc----------------------------hh
Q psy15246         17 KDKTAVVHFYADWSDE-CKHMNTLFDEMSKQSKYS---QVVFARCIAEDL----------------------------PK   64 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~-C~~~~~~~~~l~~~~~~~---~v~~~~vd~~~~----------------------------~~   64 (213)
                      .+++++|.||++||++ |+...|.+.++.+++++.   ++.++.|+++..                            .+
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            5789999999999997 999999999999999842   599999998742                            35


Q ss_pred             HHHhCC---------------CccccEEEEEeCCCCcccccCC---CchhHHHHHHHH
Q psy15246         65 LSLNYK---------------VSAVPTFVILKNLKPVDRVEGA---DPESLDKKLQNQ  104 (213)
Q Consensus        65 l~~~~~---------------I~~~Pti~~~~~g~~~~~~~g~---~~~~l~~~i~~~  104 (213)
                      ++++|+               |.++|+++++++|+.+.++.|.   +.++|.+.|+++
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            666665               4688999999988888777775   344788888765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.33  E-value=4.4e-12  Score=111.70  Aligned_cols=82  Identities=12%  Similarity=0.161  Sum_probs=71.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-   95 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-   95 (213)
                      .++..++.||++||++|+.+.|.+++++..++  ++.+..+|.+++++++++|+|+++||+++  +|+.+..  |..+. 
T Consensus       116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~~--G~~~~~  189 (521)
T 1hyu_A          116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFGQ--GRMTLT  189 (521)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEEE--SCCCHH
T ss_pred             CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEec--CCCCHH
Confidence            46677999999999999999999999999987  79999999999999999999999999977  8887653  76665 


Q ss_pred             hHHHHHHHH
Q psy15246         96 SLDKKLQNQ  104 (213)
Q Consensus        96 ~l~~~i~~~  104 (213)
                      +|.+++...
T Consensus       190 ~l~~~l~~~  198 (521)
T 1hyu_A          190 EIVAKVDTG  198 (521)
T ss_dssp             HHHHHHCCS
T ss_pred             HHHHHHhhc
Confidence            788887654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.33  E-value=9.3e-12  Score=93.12  Aligned_cols=90  Identities=10%  Similarity=0.089  Sum_probs=73.6

Q ss_pred             CCCeEEEEEEcCCCHH-HHhHHHHHHHHHHHcCC----CcEEEEEEeCCCc----------------------------h
Q psy15246         17 KDKTAVVHFYADWSDE-CKHMNTLFDEMSKQSKY----SQVVFARCIAEDL----------------------------P   63 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~-C~~~~~~~~~l~~~~~~----~~v~~~~vd~~~~----------------------------~   63 (213)
                      .+++++|.||++||++ |+...|.++++.++++.    .++.++.|+++..                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4789999999999998 99999999999998841    2799998888731                            2


Q ss_pred             hHHHhCCCcccc---------------EEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         64 KLSLNYKVSAVP---------------TFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        64 ~l~~~~~I~~~P---------------ti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      .++++|+|...|               +++++ ++|+.+.++.|.... +|.+.|+++++
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            588899999998               76666 589888888876555 78888888775

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.31  E-value=4.4e-12  Score=95.37  Aligned_cols=89  Identities=11%  Similarity=0.091  Sum_probs=68.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-----------CchhHH-------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-----------DLPKLS-------------------   66 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-----------~~~~l~-------------------   66 (213)
                      .+++++|.|||+||++|+ ..|.++++.+++++.++.++.|+++           ...+.+                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            578999999999999999 9999999999998645889888763           111122                   


Q ss_pred             -----------HhCCCcccc------EEEEE-eCCCCcccccCCCc-hhHHHHHHHHhc
Q psy15246         67 -----------LNYKVSAVP------TFVIL-KNLKPVDRVEGADP-ESLDKKLQNQAS  106 (213)
Q Consensus        67 -----------~~~~I~~~P------ti~~~-~~g~~~~~~~g~~~-~~l~~~i~~~~~  106 (213)
                                 +.|++.++|      +++++ ++|+.+.++.|... ++|.+.|+++++
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                       247899999      66666 68998888887544 479999998874

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.29  E-value=4.7e-12  Score=96.65  Aligned_cols=90  Identities=21%  Similarity=0.137  Sum_probs=75.2

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------------------chhHHHhCC
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------------------LPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~   70 (213)
                      .+++++|.|| ++||++|+...|.++++.+++++.++.++.|+.+.                         +.++++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            4789999999 99999999999999999998875468899888764                         457889999


Q ss_pred             Cc------cccEEEEE-eCCCCcccccCC-----CchhHHHHHHHHhc
Q psy15246         71 VS------AVPTFVIL-KNLKPVDRVEGA-----DPESLDKKLQNQAS  106 (213)
Q Consensus        71 I~------~~Pti~~~-~~g~~~~~~~g~-----~~~~l~~~i~~~~~  106 (213)
                      +.      ++|+++++ ++|+.+.+..|.     +.++|.+.|+++..
T Consensus       110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            99      99999999 488888777664     34478888887764

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.29  E-value=1.2e-11  Score=92.21  Aligned_cols=90  Identities=9%  Similarity=0.073  Sum_probs=68.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------c----hhH-HHhC---------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------L----PKL-SLNY---------------   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------~----~~l-~~~~---------------   69 (213)
                      .+++++|.||++||++|+...|.++++.+++++.++.++.|+++.       .    .+. .+++               
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            578999999999999999999999999999986459999998752       1    112 1222               


Q ss_pred             --------------C-----CccccEEEEE-eCCCCcccccCCCc-hhHHHHHHHHhc
Q psy15246         70 --------------K-----VSAVPTFVIL-KNLKPVDRVEGADP-ESLDKKLQNQAS  106 (213)
Q Consensus        70 --------------~-----I~~~Pti~~~-~~g~~~~~~~g~~~-~~l~~~i~~~~~  106 (213)
                                    +     |+.+|+++++ ++|+.+.++.|... ++|.+.|+++++
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  167 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE  167 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhc
Confidence                          3     3445777777 48888888877644 479999988764

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.29  E-value=9e-12  Score=93.04  Aligned_cols=90  Identities=11%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--------c---hhHHH-hC---------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--------L---PKLSL-NY---------------   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--------~---~~l~~-~~---------------   69 (213)
                      .+++++|.||++||++|+...|.++++.+++++.++.++.|+++.        .   .+.++ ++               
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            579999999999999999999999999999986459999998752        1   12233 33               


Q ss_pred             --------------CC--cccc---EEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         70 --------------KV--SAVP---TFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        70 --------------~I--~~~P---ti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                                    ++  .++|   +++++ ++|+.+.++.|.... +|.+.|+++++
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                          44  6678   76666 589988888886554 79999998864

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.28  E-value=8.1e-12  Score=95.67  Aligned_cols=90  Identities=12%  Similarity=0.056  Sum_probs=70.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--------ch---hHH-H-----------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--------LP---KLS-L-----------------   67 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--------~~---~l~-~-----------------   67 (213)
                      .+++++|.||++||++|+...|.++++.+++++.++.++.|+++.        ..   +.+ +                 
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            578999999999999999999999999999986459999998762        11   122 1                 


Q ss_pred             ------------hCCCcccc------EEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         68 ------------NYKVSAVP------TFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        68 ------------~~~I~~~P------ti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                                  .|++.++|      +++++ ++|+.+.++.|.... +|.+.|+++++
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                        24888899      66666 589988888886554 79999988874

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.26  E-value=9.9e-12  Score=95.57  Aligned_cols=90  Identities=18%  Similarity=0.126  Sum_probs=75.1

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------------------chhHHHhCC
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------------------LPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~   70 (213)
                      .+++++|.|| ++||++|+...|.+.++.+++++.++.++.|+.+.                         +.++++.|+
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            4789999999 99999999999999999999875469999998763                         456889999


Q ss_pred             Cc-----cccEEEEEe-CCCCcccccCCC-----chhHHHHHHHHhc
Q psy15246         71 VS-----AVPTFVILK-NLKPVDRVEGAD-----PESLDKKLQNQAS  106 (213)
Q Consensus        71 I~-----~~Pti~~~~-~g~~~~~~~g~~-----~~~l~~~i~~~~~  106 (213)
                      |.     ++|+++++. +|+.+.+..|..     .++|.+.|+++..
T Consensus       124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            99     999999995 888877776643     3478888888763

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.26  E-value=1.6e-11  Score=90.93  Aligned_cols=77  Identities=6%  Similarity=0.031  Sum_probs=64.7

Q ss_pred             CCC-eEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-----------------------chhHHHhCCC
Q psy15246         17 KDK-TAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-----------------------LPKLSLNYKV   71 (213)
Q Consensus        17 ~~~-~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~I   71 (213)
                      .++ +++|.|| ++||++|+...|.+.++.+++++.++.++.|+.+.                       +.++++.|++
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v  113 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGV  113 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTC
T ss_pred             cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCC
Confidence            355 9999998 99999999999999999999975479999998763                       6679999999


Q ss_pred             c----ccc--EEEEE-eCCCCcccccCCC
Q psy15246         72 S----AVP--TFVIL-KNLKPVDRVEGAD   93 (213)
Q Consensus        72 ~----~~P--ti~~~-~~g~~~~~~~g~~   93 (213)
                      .    ++|  +++++ ++|+.+.+..|..
T Consensus       114 ~~~~~~~p~~~~~lid~~G~i~~~~~g~~  142 (160)
T 1xvw_A          114 FNEQAGIANRGTFVVDRSGIIRFAEMKQP  142 (160)
T ss_dssp             EETTTTEECSEEEEECTTSBEEEEEECCT
T ss_pred             ccccCCCeeeeEEEECCCCeEEEEEecCC
Confidence            9    999  66666 5888887777754

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.24  E-value=6.5e-12  Score=96.76  Aligned_cols=89  Identities=15%  Similarity=0.196  Sum_probs=73.9

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .+++++|.|| ++||++|+...|.+.++.+++++.++.++.|+.+.                            +.++++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            5789999999 99999999999999999998875468999988763                            457899


Q ss_pred             hCCCc-----cccEEEEEe-CCCCcccccCCC-----chhHHHHHHHHh
Q psy15246         68 NYKVS-----AVPTFVILK-NLKPVDRVEGAD-----PESLDKKLQNQA  105 (213)
Q Consensus        68 ~~~I~-----~~Pti~~~~-~g~~~~~~~g~~-----~~~l~~~i~~~~  105 (213)
                      +|+|.     ++|+++++. +|+.+.+..|..     .++|.+.|+++.
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99999     999999985 888877776643     236888887765

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=94.10  Aligned_cols=89  Identities=6%  Similarity=-0.017  Sum_probs=67.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------ch----hHHHh-----------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------LP----KLSLN-----------------   68 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------~~----~l~~~-----------------   68 (213)
                      .+++++|.||++||++|+...|.++++.+++++.++.++.|+++.       ..    +.+++                 
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            578999999999999999999999999999986459999998753       11    12232                 


Q ss_pred             -------CCCcccc-------EEEEE-eCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         69 -------YKVSAVP-------TFVIL-KNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        69 -------~~I~~~P-------ti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                             |.+.++|       +++++ ++|+.+.++.|.... +|.+.|++++
T Consensus       128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             cchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                   2356788       55555 689988888876544 7888887764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.23  E-value=2.2e-11  Score=92.99  Aligned_cols=90  Identities=12%  Similarity=0.067  Sum_probs=68.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--------chhHH----------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--------LPKLS----------------------   66 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--------~~~l~----------------------   66 (213)
                      .+++++|.||++||++|+...|.++++.+++++.++.++.|+++.        ..++.                      
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            579999999999999999999999999999986458888887651        11221                      


Q ss_pred             --------------HhCCCcccc---EEEEE-eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         67 --------------LNYKVSAVP---TFVIL-KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        67 --------------~~~~I~~~P---ti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                                    ..+++.++|   +++++ ++|+.+.++.|.... +|.+.|+++++
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC-
T ss_pred             chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence                          112445667   77777 589988888886555 79999998864

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=99.22  E-value=1.1e-11  Score=89.48  Aligned_cols=59  Identities=25%  Similarity=0.338  Sum_probs=52.3

Q ss_pred             CCceEEeccCC---HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCC
Q psy15246        148 VPYDTFDILQD---QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQP  206 (213)
Q Consensus       148 v~~~~~d~~~~---~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~  206 (213)
                      ++|..+|++.+   ++.++.+++..+++|+|+|||+|++|||+|++.+|+++|+|.++|+.+
T Consensus        66 i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~vfi~g~~igG~d~l~~l~~~G~L~~~L~~a  127 (129)
T 3ctg_A           66 SKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKPV  127 (129)
T ss_dssp             GGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHHHTTHHHHHTTTT
T ss_pred             CCcEEEEccccCCHHHHHHHHHHHhCCCCCCEEEECCEEEcCHHHHHHHHHCCCHHHHHHHH
Confidence            46777888776   467888998899999999999999999999999999999999999753

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.19  E-value=6.4e-11  Score=92.24  Aligned_cols=44  Identities=11%  Similarity=0.090  Sum_probs=39.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .++++||.|||+||++|++..|.++++.+++++.++.++.|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            57899999999999999999999999999998645999999875

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.18  E-value=4.5e-11  Score=90.67  Aligned_cols=90  Identities=13%  Similarity=0.094  Sum_probs=67.1

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------c----hhHHHh-CCCc------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------L----PKLSLN-YKVS------------   72 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------~----~~l~~~-~~I~------------   72 (213)
                      .+++++|.||++||++|+...|.++++.+++++.++.++.|+++.       .    .+.+++ +++.            
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            678999999999999999999999999999987569999997653       1    234455 4332            


Q ss_pred             --------------cccE-----EEEEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         73 --------------AVPT-----FVILKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        73 --------------~~Pt-----i~~~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                                    ++|+     +++-++|+.+.++.|.... ++.+.|+++++
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~  170 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVR  170 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence                          2565     4555689988888876554 67777776653

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.18  E-value=6.1e-11  Score=91.65  Aligned_cols=89  Identities=16%  Similarity=0.145  Sum_probs=72.4

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .+++++|.|| ++||++|....|.+.++.+++++.++.++.|+.+.                            ..++++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            4789999999 99999999999999999999965469999998763                            356889


Q ss_pred             hCCCc------cccEEEEEe-CCCCcccccCCC-----chhHHHHHHHHh
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDRVEGAD-----PESLDKKLQNQA  105 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~~~g~~-----~~~l~~~i~~~~  105 (213)
                      .|++.      ++|+++++. +|+.+.+..|..     .+++.+.|+.+.
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            99999      999999885 787776655532     246777777765

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.15  E-value=5.8e-11  Score=90.21  Aligned_cols=88  Identities=13%  Similarity=0.073  Sum_probs=64.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------c----hhHHHhC----------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------L----PKLSLNY----------------   69 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------~----~~l~~~~----------------   69 (213)
                      .+++++|.||++||++|+...|.++++.+++++.++.++.|+++.       .    .+.++++                
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            578999999999999999999999999999986459999998752       1    1112222                


Q ss_pred             ---------------C-----CccccEEEEE-eCCCCcccccCCCch-hHHHHHHHH
Q psy15246         70 ---------------K-----VSAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        70 ---------------~-----I~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                                     +     |+.+|+++++ ++|+.+.++.|.... +|.+.|+++
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred             hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence                           3     3345888877 488888877775544 566665543

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.15  E-value=9.4e-11  Score=89.31  Aligned_cols=88  Identities=14%  Similarity=0.101  Sum_probs=64.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-----------chhHHHhCCC--------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-----------LPKLSLNYKV--------------   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~I--------------   71 (213)
                      .+++++|.||++||++|+...|.++++.+++++.++.++.|+++.           ..+.++++++              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  127 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  127 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence            578999999999999999999999999999986459999998752           1223333332              


Q ss_pred             ----------------------ccccEEEEE-eCCCCcccccCCCch-hHHHHHHHH
Q psy15246         72 ----------------------SAVPTFVIL-KNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        72 ----------------------~~~Pti~~~-~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                                            +.+|+++++ ++|+.+.++.|.... +|.+.|+++
T Consensus       128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence                                  224777777 478887777775443 677766654

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.15  E-value=1.6e-10  Score=87.03  Aligned_cols=83  Identities=14%  Similarity=0.188  Sum_probs=65.1

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC------------------------------------
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA------------------------------------   59 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~------------------------------------   59 (213)
                      ...+++|+.|+++|||+|+++.|.++++.++++  ++.+...+.                                    
T Consensus        20 ~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~--~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~   97 (175)
T 3gyk_A           20 PEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP--NVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGK   97 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSC
T ss_pred             CCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC--CEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCC
Confidence            356789999999999999999999999999887  566665552                                    


Q ss_pred             ---------------------------------CCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         60 ---------------------------------EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        60 ---------------------------------~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                                                       ..+..+++++||.++||+++  +|+   .+.|..+. .|.+.|++.+
T Consensus        98 ~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A           98 ANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             CSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHH
Confidence                                             23345778899999999987  675   45576555 7888888765

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=99.13  E-value=2.5e-11  Score=79.97  Aligned_cols=57  Identities=28%  Similarity=0.439  Sum_probs=52.5

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhcc
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD  204 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~  204 (213)
                      ++|..+|+..+++.+.++.+..+..++|+++++|+.+||++++.+++++|+|.++|+
T Consensus        26 i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~g~l~~~l~   82 (82)
T 1fov_A           26 VSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLLK   82 (82)
T ss_dssp             CCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTCSHHHHC
T ss_pred             CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHCCCHHHHhC
Confidence            789999999887888888877889999999999999999999999999999999874

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=99.12  E-value=1.5e-10  Score=90.64  Aligned_cols=81  Identities=17%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-------------------------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-------------------------------------   59 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-------------------------------------   59 (213)
                      +++.+++.||++|||+|+++.|.++++.+.    ++.+..+..                                     
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~  160 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  160 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCCh
Confidence            467899999999999999999999998763    344443321                                     


Q ss_pred             -------CCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         60 -------EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        60 -------~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                             +.+.++++++||+++||+ ++.+|.   ...|..+. +|.++|++..
T Consensus       161 ~~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          161 ASCDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHhh
Confidence                   234568899999999999 566774   45676554 7888887764

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.12  E-value=4.5e-11  Score=78.63  Aligned_cols=71  Identities=8%  Similarity=0.178  Sum_probs=53.9

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHH---hCCCccccEEEEEeCCCCcccccCCCchhHH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL---NYKVSAVPTFVILKNLKPVDRVEGADPESLD   98 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~---~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~   98 (213)
                      ++.|+++||++|+++.+.++++       ++.+..+|+++++++.+   ++++.++|++  +.+|+.   ..|.+.++|.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~---~~g~~~~~l~   70 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-------GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS---WSGFRPDMIN   70 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE---EESCCHHHHG
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-------CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE---EecCCHHHHH
Confidence            5779999999999999998873       46678899988766554   5899999998  447753   4577766666


Q ss_pred             HHHHHH
Q psy15246         99 KKLQNQ  104 (213)
Q Consensus        99 ~~i~~~  104 (213)
                      ++++++
T Consensus        71 ~~l~~~   76 (81)
T 1h75_A           71 RLHPAP   76 (81)
T ss_dssp             GGSCCC
T ss_pred             HHHhcc
Confidence            655443

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.11  E-value=7.5e-11  Score=90.32  Aligned_cols=89  Identities=16%  Similarity=0.223  Sum_probs=71.5

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .+++++|.|| ++||++|....|.+.++.+++++.++.++.|+.+.                            +.++++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            6789999999 99999999999999999999864368888888763                            346889


Q ss_pred             hCCCc-----cccEEEEEe-CCCCcccccCCC-----chhHHHHHHHHh
Q psy15246         68 NYKVS-----AVPTFVILK-NLKPVDRVEGAD-----PESLDKKLQNQA  105 (213)
Q Consensus        68 ~~~I~-----~~Pti~~~~-~g~~~~~~~g~~-----~~~l~~~i~~~~  105 (213)
                      +|++.     .+|+++++. +|+.+.+..|..     .+++.+.|+.+.
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            99999     999999995 888776665532     236777777664

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.11  E-value=1.3e-10  Score=91.26  Aligned_cols=89  Identities=17%  Similarity=0.175  Sum_probs=72.2

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .+++++|.|| ++||++|+...+.+.++.+++++.++.++.|+++.                            ..++++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            4699999999 99999999999999999999864368899888753                            346899


Q ss_pred             hCCCc------cccEEEEEe-CCCCcccccCC-----CchhHHHHHHHHh
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDRVEGA-----DPESLDKKLQNQA  105 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~~~g~-----~~~~l~~~i~~~~  105 (213)
                      .|++.      ++|++++++ +|+.+.+..|.     ..+++.+.|+.+.
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            99999      999999995 78777665553     2346888887765

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=99.11  E-value=5.9e-11  Score=84.25  Aligned_cols=58  Identities=22%  Similarity=0.336  Sum_probs=51.3

Q ss_pred             CCceEEeccCC---HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        148 VPYDTFDILQD---QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       148 v~~~~~d~~~~---~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      ++|..+|++.+   ++.++.+.+..+++++|++|++|++|||+|++.+++++|+|.++|+.
T Consensus        54 i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l~~l~~~g~L~~~L~~  114 (118)
T 3c1r_A           54 SKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEP  114 (118)
T ss_dssp             GGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHHHHTHHHHHHHH
T ss_pred             CCeEEEECccCCChHHHHHHHHHHhCCCCcCEEEECCEEEEcHHHHHHHHHCCcHHHHHHH
Confidence            56777888876   35778888888999999999999999999999999999999999864

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=99.10  E-value=2.5e-11  Score=101.10  Aligned_cols=61  Identities=25%  Similarity=0.379  Sum_probs=52.7

Q ss_pred             CCceEEec------cCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCCCC
Q psy15246        148 VPYDTFDI------LQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQPPS  208 (213)
Q Consensus       148 v~~~~~d~------~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~~~  208 (213)
                      ++|..+|+      ..+++.++.|+++++++|+|||||+|++|||+|++.+|+++|+|.++|+..+.
T Consensus       287 V~y~eidVlEld~~~~~~e~~~~L~~~tG~~TVPqVFI~Gk~IGG~DdL~~L~~~GeL~~lL~~~~~  353 (362)
T 2jad_A          287 VPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEPILA  353 (362)
T ss_dssp             CCTTTEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEEEETTEEEESHHHHHHHHHSSHHHHHHHHHC-
T ss_pred             CCcceEEEEEeccccCCHHHHHHHHHHHCCCCcCEEEECCEEEEChHHHHHhhhCChHHHHHHhCch
Confidence            66666666      23578899999999999999999999999999999999999999999976553

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=99.10  E-value=6.3e-11  Score=79.57  Aligned_cols=69  Identities=22%  Similarity=0.341  Sum_probs=56.0

Q ss_pred             heeccCC-CCCCCC--------CCceEEeccCCHHHHHHHHhhc-CCCcccceEeCCeEeehHHHHHHHHHcCCchhhcc
Q psy15246        135 LKIYSNW-PTYPQV--------VPYDTFDILQDQEVREGLKIYS-NWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD  204 (213)
Q Consensus       135 v~~~apW-P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~-~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~  204 (213)
                      +.|+++| |.+.++        ++|..+|++  ++..+.+.+.. +..++|+++++|+++||+|++.+++++|+|.++|+
T Consensus         9 ~~y~~~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~g~l~~~l~   86 (89)
T 2klx_A            9 ILYTRPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGRNTFPQIFIGDYHVGGCDDLYALENKGKLDSLLQ   86 (89)
T ss_dssp             EEESCSCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHHSSCCSCEEEETTEECCSHHHHHHHHHHTTHHHHHH
T ss_pred             EEEECCCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhCCCCCcCEEEECCEEEeChHHHHHHHHcCcHHHHHh
Confidence            3455666 444433        788999998  56666777666 89999999999999999999999999999999986


Q ss_pred             C
Q psy15246        205 Q  205 (213)
Q Consensus       205 ~  205 (213)
                      .
T Consensus        87 ~   87 (89)
T 2klx_A           87 D   87 (89)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.10  E-value=4.1e-10  Score=84.04  Aligned_cols=87  Identities=15%  Similarity=0.094  Sum_probs=68.4

Q ss_pred             CCCeEEEEEEcCC-CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-----------------------chhHHHhCCCc
Q psy15246         17 KDKTAVVHFYADW-SDECKHMNTLFDEMSKQSKYSQVVFARCIAED-----------------------LPKLSLNYKVS   72 (213)
Q Consensus        17 ~~~~~vV~F~a~w-C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~I~   72 (213)
                      .+++++|.||++| |++|+...|.++++.++++  ++.++.|+.+.                       +.++++.|++.
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~  120 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVY  120 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHHS--SCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCB
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCc
Confidence            5789999999999 9999999999999999993  78888887652                       34688899998


Q ss_pred             c------ccEEEEEe-CCCCcccccCCC------chhHHHHHHHHh
Q psy15246         73 A------VPTFVILK-NLKPVDRVEGAD------PESLDKKLQNQA  105 (213)
Q Consensus        73 ~------~Pti~~~~-~g~~~~~~~g~~------~~~l~~~i~~~~  105 (213)
                      .      .|+++++. +|+.+.+..|..      .+++.+.|++++
T Consensus       121 ~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          121 IKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             BTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             cccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            7      49888885 788777765421      235777777654

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.10  E-value=3.6e-11  Score=88.56  Aligned_cols=73  Identities=21%  Similarity=0.283  Sum_probs=61.0

Q ss_pred             hheeccCC-CCCCCC--------CCceEEeccCC---HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchh
Q psy15246        134 GLKIYSNW-PTYPQV--------VPYDTFDILQD---QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIP  201 (213)
Q Consensus       134 ~v~~~apW-P~~~~~--------v~~~~~d~~~~---~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~  201 (213)
                      ++.|++|| |.+.++        ++|..+|++.+   ++.+..+.+..+++++|++|++|++|||+|++.+++++|+|.+
T Consensus        51 Vvvf~~~~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi~G~~igG~d~l~~l~~~g~L~~  130 (146)
T 2ht9_A           51 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP  130 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEETTEEEESHHHHHHHHHTTCHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEECCEEEeCchHHHHHHHcChHHH
Confidence            34467777 333332        78999999877   7777888888899999999999999999999999999999999


Q ss_pred             hccCC
Q psy15246        202 TLDQP  206 (213)
Q Consensus       202 ~~~~~  206 (213)
                      +|+..
T Consensus       131 ~L~~~  135 (146)
T 2ht9_A          131 LVHQC  135 (146)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            98765

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=6.5e-11  Score=85.47  Aligned_cols=73  Identities=21%  Similarity=0.283  Sum_probs=60.8

Q ss_pred             hheeccCC-CCCCCC--------CCceEEeccCC---HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchh
Q psy15246        134 GLKIYSNW-PTYPQV--------VPYDTFDILQD---QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIP  201 (213)
Q Consensus       134 ~v~~~apW-P~~~~~--------v~~~~~d~~~~---~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~  201 (213)
                      ++.|+++| |.+.++        ++|..+|++.+   ++.+..+.+..+++++|++|++|++|||+|++.+++++|+|.+
T Consensus        29 vvvf~~~~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i~G~~igg~~~l~~~~~~~~L~~  108 (130)
T 2cq9_A           29 VVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP  108 (130)
T ss_dssp             EEEEECSSCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEETTEEEEEHHHHHHHHHHTSSHH
T ss_pred             EEEEEcCCChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCcHHH
Confidence            34466777 444333        78999999887   6777788888899999999999999999999999999999999


Q ss_pred             hccCC
Q psy15246        202 TLDQP  206 (213)
Q Consensus       202 ~~~~~  206 (213)
                      +|+..
T Consensus       109 ~L~~~  113 (130)
T 2cq9_A          109 LVHQC  113 (130)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98754

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.09  E-value=2.3e-10  Score=89.31  Aligned_cols=89  Identities=16%  Similarity=0.247  Sum_probs=71.4

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .+++++|.|| ++||++|+...|.+.++.+++++.++.++.|+.+.                            +.++++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            6789999999 99999999999999999999864368888887653                            356889


Q ss_pred             hCCCc-----cccEEEEEe-CCCCcccccCC-----CchhHHHHHHHHh
Q psy15246         68 NYKVS-----AVPTFVILK-NLKPVDRVEGA-----DPESLDKKLQNQA  105 (213)
Q Consensus        68 ~~~I~-----~~Pti~~~~-~g~~~~~~~g~-----~~~~l~~~i~~~~  105 (213)
                      +|++.     .+|+++++. +|+.+.+..|.     +.+++.+.|+.+.
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99999     899988885 78777665443     2346777777665

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.09  E-value=6.6e-11  Score=83.38  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=61.6

Q ss_pred             hhheeccCC--------CCCCCC-CC---ceEEeccCCH---HHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcC
Q psy15246        133 EGLKIYSNW--------PTYPQV-VP---YDTFDILQDQ---EVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVAN  197 (213)
Q Consensus       133 ~~v~~~apW--------P~~~~~-v~---~~~~d~~~~~---~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~  197 (213)
                      .++.|++||        |.+.+. ++   |..+|++.++   +.++.+.+..+++++|++|++|+++||+|++.+++++|
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~~   99 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMD   99 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHHHTT
T ss_pred             CEEEEEeCCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCEEEeCcHHHHHHHHCC
Confidence            345566777        222222 67   9999999874   67778887889999999999999999999999999999


Q ss_pred             CchhhccCCCC
Q psy15246        198 KLIPTLDQPPS  208 (213)
Q Consensus       198 ~l~~~~~~~~~  208 (213)
                      +|.++|+..+.
T Consensus       100 ~L~~~L~~~g~  110 (114)
T 2hze_A          100 ALGDILSSIGV  110 (114)
T ss_dssp             CHHHHHHHTTC
T ss_pred             hHHHHHHHcCC
Confidence            99999986653

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.08  E-value=4.6e-10  Score=83.34  Aligned_cols=88  Identities=11%  Similarity=0.082  Sum_probs=68.3

Q ss_pred             CCCeEEEEEEc-CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCcc-
Q psy15246         17 KDKTAVVHFYA-DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSA-   73 (213)
Q Consensus        17 ~~~~~vV~F~a-~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~-   73 (213)
                      .+++++|.||+ +||++|....|.+.++.+++++.++.++.|..+                     ...++++.|++.. 
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  113 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKE  113 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccc
Confidence            46799999998 999999999999999999887545888888765                     3446788999987 


Q ss_pred             -----------ccEEEEEe-CCCCcccccCCCch----hHHHHHHHH
Q psy15246         74 -----------VPTFVILK-NLKPVDRVEGADPE----SLDKKLQNQ  104 (213)
Q Consensus        74 -----------~Pti~~~~-~g~~~~~~~g~~~~----~l~~~i~~~  104 (213)
                                 +|+++++. +|+.+..+.+....    ++.+.|+++
T Consensus       114 ~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          114 KNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             EEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             cccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence                       99999996 78877666554443    455555544

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.07  E-value=4.1e-10  Score=72.66  Aligned_cols=68  Identities=9%  Similarity=0.100  Sum_probs=54.4

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHH---hCCCccccEEEEEeCCCCcccccCCCchhHH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL---NYKVSAVPTFVILKNLKPVDRVEGADPESLD   98 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~---~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~   98 (213)
                      ++.|+++||++|+++.+.++++       ++.+..+|++.++++.+   ++++.++|++++  +|+.   ..|.+.++|.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g~~~~~l~   70 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGFRPERIK   70 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESCCHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcCCCHHHHH
Confidence            5679999999999999998874       36677889988777665   899999999873  6753   5678777777


Q ss_pred             HHH
Q psy15246         99 KKL  101 (213)
Q Consensus        99 ~~i  101 (213)
                      +++
T Consensus        71 ~~l   73 (75)
T 1r7h_A           71 QLQ   73 (75)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            766

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=99.06  E-value=6.8e-11  Score=79.79  Aligned_cols=57  Identities=25%  Similarity=0.424  Sum_probs=53.7

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhcc
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD  204 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~  204 (213)
                      ++|..+|++.+++.++.+.+..+..++|++|++|+.+||++++.+++++|+|.++|+
T Consensus        31 i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~~~l~~~l~   87 (92)
T 2khp_A           31 AEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDEGKLDSLLK   87 (92)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHTSSCCCEEEETTEEEESHHHHHHHHTTTCHHHHHH
T ss_pred             CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEcCHHHHHHHHHcCCHHHHHh
Confidence            789999999988888888888889999999999999999999999999999999987

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.04  E-value=5.4e-10  Score=87.74  Aligned_cols=76  Identities=18%  Similarity=0.255  Sum_probs=64.1

Q ss_pred             CCCeEEEEEEc-CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFYA-DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~a-~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .+++++|.||+ +||++|+...|.+.++.+++++.++.++.|+++.                            +.++++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            57899999996 9999999999999999999975468999888763                            236788


Q ss_pred             hCCCc------cccEEEEEe-CCCCcccccCC
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDRVEGA   92 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~~~g~   92 (213)
                      .|++.      .+|+++++. +|+.+....|.
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~  179 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGILRQITIND  179 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSEEEEEEEEC
T ss_pred             HcCCeecCCCCccceEEEECCCCeEEEEEecC
Confidence            99999      899999995 88877766554

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=99.03  E-value=7.1e-10  Score=86.46  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=59.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-------------------------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-------------------------------------   59 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-------------------------------------   59 (213)
                      +++.+++.|+++|||+|+++.|.++++.+.    ++.+..+..                                     
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~  160 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  160 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCCh
Confidence            567899999999999999999999997652    244433221                                     


Q ss_pred             -------CCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHH
Q psy15246         60 -------EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        60 -------~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                             +++.++++++||+++||+++ .+|+   ...|..+. +|.++|++.
T Consensus       161 ~~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          161 VKTPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             CCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence                   13456789999999999987 7886   34576444 788888754

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.03  E-value=4.2e-10  Score=84.20  Aligned_cols=90  Identities=12%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             CCCeEEEEEEcCCCH-HHHhHHHHHHHHHHHcCCC--cEEEEEEeCCC---c-------------------------hhH
Q psy15246         17 KDKTAVVHFYADWSD-ECKHMNTLFDEMSKQSKYS--QVVFARCIAED---L-------------------------PKL   65 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~-~C~~~~~~~~~l~~~~~~~--~v~~~~vd~~~---~-------------------------~~l   65 (213)
                      .+++++|.||++||+ +|....+.+.++.+.++..  ++.++.|+++.   .                         .++
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            578999999999999 9999999999999887742  38888888762   1                         112


Q ss_pred             HHh----------------CCCccccEEEEEe-CCCCcccccCCC---chhHHHHHHHHhc
Q psy15246         66 SLN----------------YKVSAVPTFVILK-NLKPVDRVEGAD---PESLDKKLQNQAS  106 (213)
Q Consensus        66 ~~~----------------~~I~~~Pti~~~~-~g~~~~~~~g~~---~~~l~~~i~~~~~  106 (213)
                      +++                |++...|+++++. +|+.+.++.|..   .++|.+.|+++++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence            222                3456789877774 888888888865   3478888888764

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.02  E-value=7.6e-10  Score=83.50  Aligned_cols=86  Identities=12%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             CCCeEEEEEEcCC-CHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--------------C--------chhHHHhCCCcc
Q psy15246         17 KDKTAVVHFYADW-SDECKHMNTLFDEMSKQSKYSQVVFARCIAE--------------D--------LPKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~w-C~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--------------~--------~~~l~~~~~I~~   73 (213)
                      .+++++|.||++| |++|+...|.+.++.++ .  ++.++.|+.+              .        +.++++.|++..
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~--~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  119 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA-S--GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTI  119 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-T--TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBB
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-c--CCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcc
Confidence            5789999999999 99999999999999988 4  7888888876              2        356889999998


Q ss_pred             c---------cEEEEEe-CCCCccccc--CCCch-hHHHHHHHHh
Q psy15246         74 V---------PTFVILK-NLKPVDRVE--GADPE-SLDKKLQNQA  105 (213)
Q Consensus        74 ~---------Pti~~~~-~g~~~~~~~--g~~~~-~l~~~i~~~~  105 (213)
                      .         |+++++. +|+.+....  +.... ++.+.|+.+.
T Consensus       120 ~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~  164 (175)
T 1xvq_A          120 ADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG  164 (175)
T ss_dssp             CSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred             cccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHH
Confidence            7         8877775 888777664  33333 5777776654

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.02  E-value=9.1e-10  Score=84.93  Aligned_cols=91  Identities=11%  Similarity=0.088  Sum_probs=64.8

Q ss_pred             CCCeEEEEEEcCCCHH-HHhHHHHHHHHHHHcCC---CcEEEEEEeCCC----------------------------chh
Q psy15246         17 KDKTAVVHFYADWSDE-CKHMNTLFDEMSKQSKY---SQVVFARCIAED----------------------------LPK   64 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~-C~~~~~~~~~l~~~~~~---~~v~~~~vd~~~----------------------------~~~   64 (213)
                      .+++++|.||++||++ |....|.+.++.+.+..   .++.++.|+++.                            ...
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            5789999999999997 99999999997766641   267788787662                            135


Q ss_pred             HHHhCCCc-ccc---------------EEEEE-eCCCCcccccCCC-chhHHHHHHHHhcc
Q psy15246         65 LSLNYKVS-AVP---------------TFVIL-KNLKPVDRVEGAD-PESLDKKLQNQAST  107 (213)
Q Consensus        65 l~~~~~I~-~~P---------------ti~~~-~~g~~~~~~~g~~-~~~l~~~i~~~~~~  107 (213)
                      ++++|+|. +.|               +++++ ++|+.+.++.|.. ..++.+.|++.+..
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~  180 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKS  180 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            78889987 454               55555 5888888777743 34677777777643

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.00  E-value=1.8e-09  Score=79.98  Aligned_cols=75  Identities=13%  Similarity=0.077  Sum_probs=60.9

Q ss_pred             CeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCcccc-
Q psy15246         19 KTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSAVP-   75 (213)
Q Consensus        19 ~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~~P-   75 (213)
                      ++++|.|| +.||++|....|.+.++.+++++.+ .++.|..+                     .+.++++.|++...| 
T Consensus        36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~  114 (159)
T 2a4v_A           36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPL  114 (159)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSS
T ss_pred             CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccc
Confidence            47889987 9999999999999999999988645 66767654                     344688999999999 


Q ss_pred             ------EEEEEeCCCCcccccCCCch
Q psy15246         76 ------TFVILKNLKPVDRVEGADPE   95 (213)
Q Consensus        76 ------ti~~~~~g~~~~~~~g~~~~   95 (213)
                            ++++ ++|+.+....|....
T Consensus       115 ~g~~~~~~li-~~G~i~~~~~g~~~~  139 (159)
T 2a4v_A          115 SGSIRSHFIF-VDGKLKFKRVKISPE  139 (159)
T ss_dssp             SCBCCEEEEE-ETTEEEEEEESCCHH
T ss_pred             CCccceEEEE-cCCEEEEEEccCCcc
Confidence                  6777 999988888786553

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.96  E-value=8.8e-09  Score=80.96  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=80.3

Q ss_pred             eEEeCCchhhhhhcCC-CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--CchhHHHhCCCc--cccEE
Q psy15246          3 VVQISEELDVEKYGKD-KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE--DLPKLSLNYKVS--AVPTF   77 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~-~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--~~~~l~~~~~I~--~~Pti   77 (213)
                      |.++|.++.......+ ..+++.|+.+||++|..+.+.|+++|+.+++ ++.|+.+|++  .+..+++.||+.  .+|++
T Consensus       115 v~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~-~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~  193 (227)
T 4f9z_D          115 VTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQG-KILFILVDSGMKENGKVISFFKLKESQLPAL  193 (227)
T ss_dssp             EEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTT-TCEEEEEETTSGGGHHHHHHTTCCGGGCSEE
T ss_pred             eeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhC-CEEEEEeCCccHhHHHHHHHcCCCcccCCEE
Confidence            5677776666666555 4555677789999999999999999999998 7999999997  477889999998  89999


Q ss_pred             EEEeCCCCccc-c--cCCCchhHHHHHHHHhc
Q psy15246         78 VILKNLKPVDR-V--EGADPESLDKKLQNQAS  106 (213)
Q Consensus        78 ~~~~~g~~~~~-~--~g~~~~~l~~~i~~~~~  106 (213)
                      +++..+....+ .  ...+.+.|.+|+++.+.
T Consensus       194 ~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          194 AIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             EEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred             EEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence            99984432221 1  23455589999999864

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.95  E-value=2.4e-09  Score=81.86  Aligned_cols=42  Identities=21%  Similarity=0.198  Sum_probs=36.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA   59 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~   59 (213)
                      .++++|+.|+++|||+|+++.|.+.++.+.+++ ++.|..+..
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence            567899999999999999999999999999987 777775544

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.94  E-value=6.4e-09  Score=79.65  Aligned_cols=44  Identities=18%  Similarity=0.351  Sum_probs=39.3

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      ..++++|+.||++|||+|+++.|.++++.+.+++ ++.|..++..
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            3578899999999999999999999999999987 7888888764

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=98.94  E-value=6.9e-10  Score=74.22  Aligned_cols=47  Identities=30%  Similarity=0.481  Sum_probs=44.0

Q ss_pred             CCceEEecc-----CCHHHHHHHHhhcCCC-----cccceEe-CCeEeehHHHHHHHH
Q psy15246        148 VPYDTFDIL-----QDQEVREGLKIYSNWP-----TYPQVYV-NTELIGGLDIIKELQ  194 (213)
Q Consensus       148 v~~~~~d~~-----~~~~~~~~l~~~~~~p-----t~p~i~i-~g~~~gg~d~~~~~~  194 (213)
                      ++|..+|++     .+++.+++|++.++++     |+|++|| +|++|||+|++.+|+
T Consensus        29 i~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~l~~~~   86 (87)
T 1aba_A           29 QPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQLREYF   86 (87)
T ss_dssp             CCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHHHHHHT
T ss_pred             CCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHHHHHhc
Confidence            789999999     7889999999999999     9999999 999999999999986

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.91  E-value=2.1e-09  Score=84.58  Aligned_cols=148  Identities=14%  Similarity=0.132  Sum_probs=98.7

Q ss_pred             eEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +++|++ +...+.+.+++.++|-|+++|   |....+.|.++|+.++  ++.|+.+.   +.+++++|+|.+ |++++|+
T Consensus        11 ~~~l~s~~~~~~~l~~~~v~vVgff~~~---~~~~~~~f~~~A~~l~--~~~F~~t~---~~~v~~~~~v~~-p~i~lfk   81 (227)
T 4f9z_D           11 PTWLTDVPAAMEFIAATEVAVIGFFQDL---EIPAVPILHSMVQKFP--GVSFGIST---DSEVLTHYNITG-NTICLFR   81 (227)
T ss_dssp             CEECCSHHHHHHHHHTSSEEEEEECSCS---CSTHHHHHHHHTTTCT--TSEEEEEC---CHHHHHHTTCCS-SEEEEEE
T ss_pred             CeeeCCHHHHHHHHhcCCeEEEEEecCC---CchhHHHHHHHHHhCC--CceEEEEC---CHHHHHHcCCCC-CeEEEEE
Confidence            567777 555556788999999999998   5688899999999995  78888743   789999999998 9999999


Q ss_pred             CCC--Cccccc----CCCchhHHHHHHHHhccCCCCCCcccccCCCcccccchhh-hhhhheeccCCC-CCCCC------
Q psy15246         82 NLK--PVDRVE----GADPESLDKKLQNQASTMKNQPSNITHVPYDTFDILQDQE-VREGLKIYSNWP-TYPQV------  147 (213)
Q Consensus        82 ~g~--~~~~~~----g~~~~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~~~-~~~~v~~~apWP-~~~~~------  147 (213)
                      ++.  ...+..    +.+..+|.+||....-     |. +..++..++..+-... ...++.|+.+|. .+.++      
T Consensus        82 ~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~-----pl-v~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~  155 (227)
T 4f9z_D           82 LVDNEQLNLEDEDIESIDATKLSRFIEINSL-----HM-VTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQK  155 (227)
T ss_dssp             TTTTEEEEECHHHHHTCCHHHHHHHHHHHCC-----CS-EEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHH
T ss_pred             ecCcccccccccccCCCCHHHHHHHHHHhCC-----Cc-eeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHH
Confidence            653  233322    3555589999999852     22 3445555555332222 223334446662 22221      


Q ss_pred             --------CCceEEeccC--CHHHHHHH
Q psy15246        148 --------VPYDTFDILQ--DQEVREGL  165 (213)
Q Consensus       148 --------v~~~~~d~~~--~~~~~~~l  165 (213)
                              +.|+.+|+..  .....+.+
T Consensus       156 vAk~~k~~i~F~~vd~~~~~~~~~l~~f  183 (227)
T 4f9z_D          156 AAKLFQGKILFILVDSGMKENGKVISFF  183 (227)
T ss_dssp             HHHHTTTTCEEEEEETTSGGGHHHHHHT
T ss_pred             HHHHhhCCEEEEEeCCccHhHHHHHHHc
Confidence                    6788899864  34444433

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.91  E-value=7.9e-09  Score=78.22  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCcc-
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSA-   73 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~-   73 (213)
                      .+++++|.|| +.||+.|....|.++++.+++++.++.++.|..+                     ...++++.|++.. 
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~  129 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKE  129 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCccc
Confidence            4678999998 9999999999999999999987656888888765                     3446788999864 


Q ss_pred             -----------ccEEEEEe-CCCCcccccCCCch----hHHHHHHHH
Q psy15246         74 -----------VPTFVILK-NLKPVDRVEGADPE----SLDKKLQNQ  104 (213)
Q Consensus        74 -----------~Pti~~~~-~g~~~~~~~g~~~~----~l~~~i~~~  104 (213)
                                 .|+++++. +|+.+..+.+....    ++.+.|+++
T Consensus       130 ~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          130 KTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             ECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             ccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence                       58888886 88877666554432    455555544

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.87  E-value=1.2e-08  Score=79.75  Aligned_cols=43  Identities=9%  Similarity=0.006  Sum_probs=38.1

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .++++||.|||+||++|+ ..|.++++.++|++.++.++.|.++
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            578999999999999999 7899999999998646999998864

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.87  E-value=3.9e-09  Score=82.86  Aligned_cols=89  Identities=16%  Similarity=0.196  Sum_probs=68.5

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .++++||.|| ++||++|....|.+.++.+++++.++.++.|..+.                            ..++++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            6789999999 99999999999999999988864368888887642                            124678


Q ss_pred             hCCC-----ccccEEEEEe-CCCCcccccCC-----CchhHHHHHHHHh
Q psy15246         68 NYKV-----SAVPTFVILK-NLKPVDRVEGA-----DPESLDKKLQNQA  105 (213)
Q Consensus        68 ~~~I-----~~~Pti~~~~-~g~~~~~~~g~-----~~~~l~~~i~~~~  105 (213)
                      .|++     ..+|++++++ +|+.+....|.     +.+++.+.|+.+.
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            8898     4789999996 78777665442     2346777777664

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.87  E-value=7.7e-10  Score=77.81  Aligned_cols=61  Identities=10%  Similarity=0.111  Sum_probs=46.7

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-------hHHHhCCCccccEEEEEeCCCCcc
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-------KLSLNYKVSAVPTFVILKNLKPVD   87 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-------~l~~~~~I~~~Pti~~~~~g~~~~   87 (213)
                      .++.|+++||++|+++.+.++++....+  +  +..+|++.++       ++.+.+++.++|+++  .+|+.+.
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~~--~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~ig   87 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKFSFKRG--A--YEIVDIKEFKPENELRDYFEQITGGKTVPRIF--FGKTSIG   87 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTSCBCTT--S--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE--ETTEEEE
T ss_pred             CEEEEEeCCChhHHHHHHHHHHcCCCcC--c--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence            4667999999999999999887543321  2  6777887764       788999999999874  3787554

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.84  E-value=1e-08  Score=81.53  Aligned_cols=85  Identities=14%  Similarity=0.156  Sum_probs=62.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC------------------------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE------------------------------------   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~------------------------------------   60 (213)
                      +.+.+|+.|+.+|||+|+++.+.++++.+.  + +|.+..+...                                    
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g-~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~  172 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLN  172 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--C-cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Confidence            456789999999999999999999987765  3 5776654431                                    


Q ss_pred             --------------CchhHHHhCCCccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHh
Q psy15246         61 --------------DLPKLSLNYKVSAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        61 --------------~~~~l~~~~~I~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                                    .+.++++++||+++||+++.. +|+. ....|..+. +|.++|++.+
T Consensus       173 ~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          173 VPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC--
T ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHH
Confidence                          234567899999999999987 4643 456786555 6888776654

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.84  E-value=1e-08  Score=79.79  Aligned_cols=89  Identities=15%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .+++++|.|| ++||++|....|.+.++.++++..++.++.|..+.                            ..++++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            5789999999 99999999999999999998865468888887542                            124678


Q ss_pred             hCCCc------cccEEEEEe-CCCCcccccCC-----CchhHHHHHHHHh
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDRVEGA-----DPESLDKKLQNQA  105 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~~~g~-----~~~~l~~~i~~~~  105 (213)
                      .|++.      .+|+++++. +|+.+....|.     ..+++.+.|+.+.
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            88985      699999996 78776655442     3346777777664

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.82  E-value=1.2e-08  Score=77.73  Aligned_cols=89  Identities=12%  Similarity=0.059  Sum_probs=67.8

Q ss_pred             CCCeEEEEEEc-CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------------------chhHHHhCC
Q psy15246         17 KDKTAVVHFYA-DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------------------LPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~a-~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~   70 (213)
                      .+++++|.||+ .||++|....|.+.++.+++++.++.++.|..+.                         ..++++.|+
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            47899999995 9999999999999999988874468888887542                         234677888


Q ss_pred             Cc------cccEEEEEe-CCCCcccccCCC-----chhHHHHHHHHh
Q psy15246         71 VS------AVPTFVILK-NLKPVDRVEGAD-----PESLDKKLQNQA  105 (213)
Q Consensus        71 I~------~~Pti~~~~-~g~~~~~~~g~~-----~~~l~~~i~~~~  105 (213)
                      +.      ..|+++++. +|+.+....|..     .+++.+.|+.+.
T Consensus       109 v~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            87      379999996 788776665532     346777777665

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.80  E-value=8e-09  Score=82.51  Aligned_cols=89  Identities=9%  Similarity=-0.003  Sum_probs=69.0

Q ss_pred             CCCe-EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC---------------------------chhHHHh
Q psy15246         17 KDKT-AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED---------------------------LPKLSLN   68 (213)
Q Consensus        17 ~~~~-~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~   68 (213)
                      .++. +++.||++||+.|....+.+.++.++++..++.++.|+++.                           ..++++.
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~  111 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  111 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHH
Confidence            5664 56688999999999999999999999875468899888763                           3468899


Q ss_pred             CCCc-------cccEEEEEe-CCCCcccccC-----CCchhHHHHHHHHh
Q psy15246         69 YKVS-------AVPTFVILK-NLKPVDRVEG-----ADPESLDKKLQNQA  105 (213)
Q Consensus        69 ~~I~-------~~Pti~~~~-~g~~~~~~~g-----~~~~~l~~~i~~~~  105 (213)
                      |++.       ++|+++++. +|+......|     .+.++|.+.|+.+.
T Consensus       112 ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          112 LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             HTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence            9997       899988886 7776655444     34457888877664

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.79  E-value=1.5e-08  Score=78.65  Aligned_cols=43  Identities=7%  Similarity=-0.025  Sum_probs=37.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .++++||.|||+||++| ...|.++++.+++++.++.++.|.++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            57899999999999999 67899999999998646999988764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=3.1e-09  Score=76.57  Aligned_cols=80  Identities=18%  Similarity=0.170  Sum_probs=52.9

Q ss_pred             hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc---h----hHHHhCCCccccEEEEEeCCCCc
Q psy15246         14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL---P----KLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~---~----~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      .+..+ .++| |+++||++|+++++.++++.       +.+..+|++.+   +    ++++.+++.++|+++  .+|+.+
T Consensus        23 ~i~~~-~vvv-f~~~~Cp~C~~~~~~L~~~~-------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i~G~~i   91 (130)
T 2cq9_A           23 TISDN-CVVI-FSKTSCSYCTMAKKLFHDMN-------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNGTFI   91 (130)
T ss_dssp             HHHHS-SEEE-EECSSCSHHHHHHHHHHHHT-------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--ETTEEE
T ss_pred             HHcCC-cEEE-EEcCCChHHHHHHHHHHHcC-------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence            34444 3433 99999999999999999863       33455666654   3    378899999999983  478655


Q ss_pred             cccc---CCCch-hHHHHHHHH
Q psy15246         87 DRVE---GADPE-SLDKKLQNQ  104 (213)
Q Consensus        87 ~~~~---g~~~~-~l~~~i~~~  104 (213)
                      ....   +.... .|.++|+..
T Consensus        92 gg~~~l~~~~~~~~L~~~L~~~  113 (130)
T 2cq9_A           92 GGATDTHRLHKEGKLLPLVHQC  113 (130)
T ss_dssp             EEHHHHHHHHHHTSSHHHHHHH
T ss_pred             cChHHHHHHHHcCcHHHHHHHc
Confidence            4221   11122 466666664

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.77  E-value=3.2e-08  Score=74.24  Aligned_cols=90  Identities=13%  Similarity=0.076  Sum_probs=67.1

Q ss_pred             CCCeEEEEEEcCCCH-HHHhHHHHHHHHHHHcCC--CcEEEEEEeCCC-------------------------------c
Q psy15246         17 KDKTAVVHFYADWSD-ECKHMNTLFDEMSKQSKY--SQVVFARCIAED-------------------------------L   62 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~-~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~-------------------------------~   62 (213)
                      .+++++|.||++||+ .|....+.++++.+++..  .++.++.|.++.                               .
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~  106 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDL  106 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHH
Confidence            488999999999997 699999999999998852  357777776541                               1


Q ss_pred             hhHHHhCC---------CccccEEEEEe-CCCCcccccCCCc--hhHHHHHHHHhc
Q psy15246         63 PKLSLNYK---------VSAVPTFVILK-NLKPVDRVEGADP--ESLDKKLQNQAS  106 (213)
Q Consensus        63 ~~l~~~~~---------I~~~Pti~~~~-~g~~~~~~~g~~~--~~l~~~i~~~~~  106 (213)
                      .++++.||         +...|++.++. +|+.+.++.|...  +++.+.|++.+.
T Consensus       107 ~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~  162 (170)
T 3me7_A          107 FKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARG  162 (170)
T ss_dssp             HHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTT
T ss_pred             HHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhc
Confidence            24566655         34567788886 8887777777543  479999988864

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.76  E-value=1.1e-08  Score=68.77  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=52.1

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-----Cc----hhHHHhCCCccccEEEEEeCCCCcccccCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-----DL----PKLSLNYKVSAVPTFVILKNLKPVDRVEGA   92 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-----~~----~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~   92 (213)
                      ++.|+++||++|+++++.++++.-       .+-.+|++     +.    .++.+.+++.++|++++  +|+   ...|+
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~gi-------~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~---~i~G~   81 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREGV-------DFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDK---HVLGY   81 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHTC-------CCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTE---EEESC
T ss_pred             EEEEECCCChHHHHHHHHHHHcCC-------CcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCE---EEeCC
Confidence            567999999999999999988742       23334554     33    56778899999999876  674   35688


Q ss_pred             CchhHHHHHH
Q psy15246         93 DPESLDKKLQ  102 (213)
Q Consensus        93 ~~~~l~~~i~  102 (213)
                      +.++|.++|.
T Consensus        82 ~~~~l~~~l~   91 (92)
T 3ic4_A           82 NEEKLKELIR   91 (92)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHhc
Confidence            8778888774

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.75  E-value=3.8e-09  Score=78.33  Aligned_cols=87  Identities=16%  Similarity=0.228  Sum_probs=56.4

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCc--
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVS--   72 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~--   72 (213)
                      .++.++|.|| ++||++|....|.+.++.+++...++.++.|+.+                     .+.+++++|||.  
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~  108 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE  108 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence            5789999999 9999999999999999988887656788877754                     334577888874  


Q ss_pred             ---------cccEEEEEe-CCCCcccccCC------CchhHHHHHHH
Q psy15246         73 ---------AVPTFVILK-NLKPVDRVEGA------DPESLDKKLQN  103 (213)
Q Consensus        73 ---------~~Pti~~~~-~g~~~~~~~g~------~~~~l~~~i~~  103 (213)
                               ..|++.++. +|+......+.      +.+++.+.|+.
T Consensus       109 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~  155 (157)
T 4g2e_A          109 FPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS  155 (157)
T ss_dssp             CTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHH
T ss_pred             cccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence                     467777775 77765443332      12356665554

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.75  E-value=1.9e-08  Score=68.04  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=58.3

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhC-----CCccccEEEEEeCCCCcccccCCCch
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNY-----KVSAVPTFVILKNLKPVDRVEGADPE   95 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~-----~I~~~Pti~~~~~g~~~~~~~g~~~~   95 (213)
                      .|+.|.++|||+|++.+..|++.       ++.|-.+|++++++..+.+     |.+++|+++ +.+|+.   ..|++..
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~-------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~-i~Dg~~---l~~~~~~   73 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN-------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVK-FADGST---LTNPSAD   73 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT-------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEE-ETTSCE---EESCCHH
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc-------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEE-EeCCEE---EeCCCHH
Confidence            36779999999999999888773       5778889999887655433     788999975 466754   3577888


Q ss_pred             hHHHHHHHHhc
Q psy15246         96 SLDKKLQNQAS  106 (213)
Q Consensus        96 ~l~~~i~~~~~  106 (213)
                      +|.++|.+..+
T Consensus        74 el~~~L~el~g   84 (92)
T 2lqo_A           74 EVKAKLVKIAG   84 (92)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999988753

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.74  E-value=5.7e-09  Score=76.73  Aligned_cols=62  Identities=19%  Similarity=0.234  Sum_probs=44.8

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc---h----hHHHhCCCccccEEEEEeCCCCcc
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL---P----KLSLNYKVSAVPTFVILKNLKPVD   87 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~---~----~l~~~~~I~~~Pti~~~~~g~~~~   87 (213)
                      +..+ .++| |+++||++|+++.+.++++.       +.+..+|++.+   +    ++++.+++.++|++  |.+|+.+.
T Consensus        46 i~~~-~Vvv-f~~~~Cp~C~~~k~~L~~~~-------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i--fi~G~~ig  114 (146)
T 2ht9_A           46 ISDN-CVVI-FSKTSCSYCTMAKKLFHDMN-------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--FVNGTFIG  114 (146)
T ss_dssp             HHHC-SEEE-EECTTCHHHHHHHHHHHHHT-------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE--EETTEEEE
T ss_pred             hcCC-CEEE-EECCCChhHHHHHHHHHHcC-------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeE--EECCEEEe
Confidence            3443 4444 99999999999999999873       23445666544   3    37889999999998  34786543

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.74  E-value=4.2e-08  Score=72.88  Aligned_cols=73  Identities=11%  Similarity=0.006  Sum_probs=56.5

Q ss_pred             CCCeEEEEEEc-CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-----------------------chhHHHhCCCc
Q psy15246         17 KDKTAVVHFYA-DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-----------------------LPKLSLNYKVS   72 (213)
Q Consensus        17 ~~~~~vV~F~a-~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~I~   72 (213)
                      .+++++|.||+ .||++|....|.+.++.+++ . ++.++.|+.+.                       ..++++.|++.
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~-~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~  118 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-D-NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALL  118 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T-TEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCB
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-C-CcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCc
Confidence            57899999995 99999999999999999988 3 78888887542                       23566777776


Q ss_pred             ----c--ccEEEEEe-CCCCcccccC
Q psy15246         73 ----A--VPTFVILK-NLKPVDRVEG   91 (213)
Q Consensus        73 ----~--~Pti~~~~-~g~~~~~~~g   91 (213)
                          +  .|++++++ +|+.+....|
T Consensus       119 ~~~~g~~~p~~~liD~~G~i~~~~~g  144 (163)
T 1psq_A          119 INEWHLLARAVFVLDTDNTIRYVEYV  144 (163)
T ss_dssp             CTTTCSBCCEEEEECTTCBEEEEEEC
T ss_pred             cccCCceEEEEEEEcCCCeEEEEEec
Confidence                3  38888885 7777666654

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.73  E-value=7.2e-08  Score=73.91  Aligned_cols=43  Identities=16%  Similarity=0.346  Sum_probs=38.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .++++||.|++.|||+|+++.|.++++.+.+++ ++.|..+.+.
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence            468899999999999999999999999999987 7888887754

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.73  E-value=4.9e-08  Score=77.52  Aligned_cols=88  Identities=15%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             CCCeEEEEEEc-CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFYA-DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~a-~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .+++++|.||+ .||++|....|.+.++.+++++.++.++.|.++.                            ..++++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            57899999999 9999999999999999999975568888887652                            235788


Q ss_pred             hCCCc------cccEEEEEe-CCCCcccccC-----CCchhHHHHHHHH
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDRVEG-----ADPESLDKKLQNQ  104 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~~~g-----~~~~~l~~~i~~~  104 (213)
                      .|++.      .+|++++++ +|+.+....+     ...+++.+.|+..
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            89998      789999886 7776655443     2223555555544

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.72  E-value=2.6e-08  Score=74.73  Aligned_cols=76  Identities=8%  Similarity=-0.018  Sum_probs=54.8

Q ss_pred             CCCeEEEEEE-cCCCHHHHh-HHHHHHHHHHHcCCCcE-EEEEEeCCC-----------------------chhHHHhCC
Q psy15246         17 KDKTAVVHFY-ADWSDECKH-MNTLFDEMSKQSKYSQV-VFARCIAED-----------------------LPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~-~~~~~~~l~~~~~~~~v-~~~~vd~~~-----------------------~~~l~~~~~   70 (213)
                      .+++++|.|| ++||++|.. ..|.+.++.+++++.++ .++.|+.+.                       +.+++++|+
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~g  109 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVD  109 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcC
Confidence            5778888887 999999999 99999999888864368 888887542                       234667777


Q ss_pred             Cccc-----------cEEEEEeCCCCcccccCC
Q psy15246         71 VSAV-----------PTFVILKNLKPVDRVEGA   92 (213)
Q Consensus        71 I~~~-----------Pti~~~~~g~~~~~~~g~   92 (213)
                      +...           |+.+++++|+......+.
T Consensus       110 v~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~  142 (167)
T 2wfc_A          110 MELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEP  142 (167)
T ss_dssp             CEECCHHHHSSCEECCEEEEEETTEEEEEEECT
T ss_pred             CccccccccCcccceEEEEEEeCCEEEEEEecC
Confidence            7643           765555777665544443

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.71  E-value=6.6e-08  Score=72.29  Aligned_cols=42  Identities=17%  Similarity=0.109  Sum_probs=37.0

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .+++++|.|| +.||++|....|.+.++.+++ . ++.++.|..+
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~-~v~vv~Is~d   88 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-E-GVDVTVVSMD   88 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T-TEEEEEEESS
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-C-CceEEEEeCC
Confidence            4789999999 899999999999999999988 3 7888888765

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.66  E-value=4.3e-08  Score=72.90  Aligned_cols=44  Identities=14%  Similarity=0.116  Sum_probs=36.4

Q ss_pred             CCCeEEEEEE-cCCCHHHH-hHHHHHHHHHHHcCCCcEE-EEEEeCC
Q psy15246         17 KDKTAVVHFY-ADWSDECK-HMNTLFDEMSKQSKYSQVV-FARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~-~~~~~~~~l~~~~~~~~v~-~~~vd~~   60 (213)
                      ++++++|.|| +.||++|. ...|.+.++.+++++.++. ++.|..+
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d   80 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN   80 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            5789999999 89999999 8999999999888643566 7777654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.66  E-value=8.1e-08  Score=71.50  Aligned_cols=73  Identities=11%  Similarity=0.090  Sum_probs=56.0

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-----------------------chhHHHhCCCc
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-----------------------LPKLSLNYKVS   72 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~I~   72 (213)
                      .+++++|.|| +.||++|....|.+.++.+++ . ++.++.|+.+.                       ..++++.|++.
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~  119 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S-NTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVD  119 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T-TEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCE
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCce
Confidence            5789999999 899999999999999999988 3 78888887541                       34566777775


Q ss_pred             c---------ccEEEEEe-CCCCcccccC
Q psy15246         73 A---------VPTFVILK-NLKPVDRVEG   91 (213)
Q Consensus        73 ~---------~Pti~~~~-~g~~~~~~~g   91 (213)
                      .         .|+++++. +|+.+....|
T Consensus       120 ~~~~~~~g~~~p~~~liD~~G~i~~~~~~  148 (165)
T 1q98_A          120 IQTGPLAGLTSRAVIVLDEQNNVLHSQLV  148 (165)
T ss_dssp             ECSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             ecccccCCccceeEEEEcCCCEEEEEEeC
Confidence            3         48777775 6776665543

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.65  E-value=4.3e-09  Score=78.72  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=65.4

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCc-
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVS-   72 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~-   72 (213)
                      .+++++++.|| ++||++|....|.+.++.+++++.++.++.|+.+                     .+.+++++|||. 
T Consensus        31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~  110 (164)
T 4gqc_A           31 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH  110 (164)
T ss_dssp             HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred             cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCcc
Confidence            46888999998 9999999999999999888887656888888754                     344678889884 


Q ss_pred             ---------cccEEEEEe-CCCCcccccCC------CchhHHHHHHHHhc
Q psy15246         73 ---------AVPTFVILK-NLKPVDRVEGA------DPESLDKKLQNQAS  106 (213)
Q Consensus        73 ---------~~Pti~~~~-~g~~~~~~~g~------~~~~l~~~i~~~~~  106 (213)
                               ..|++.++. +|+......+.      +.+++.+.++++++
T Consensus       111 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A          111 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             EEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             cccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence                     367777775 77765433321      22356666666553

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.64  E-value=2e-07  Score=66.50  Aligned_cols=93  Identities=14%  Similarity=0.214  Sum_probs=72.8

Q ss_pred             eEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +.+|++ +...+.+..+++++|-|+++||++|   .+.|.++|+.+ + ++.|+.++   +++++++|++. .|++++|+
T Consensus        23 ~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~-d~~F~~t~---~~~v~~~~~v~-~~~vvlfk   93 (124)
T 2l4c_A           23 PTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-P-GVSFGIST---DSEVLTHYNIT-GNTICLFR   93 (124)
T ss_dssp             CEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-T-TSEEEEEC---CHHHHHHTTCC-SSCEEEEE
T ss_pred             ceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-C-CceEEEEC---hHHHHHHcCCC-CCeEEEEE
Confidence            355766 4455566788999999999999999   56999999999 4 79998875   47899999999 89999999


Q ss_pred             CCC-CcccccC-----CCchhHHHHHHHH
Q psy15246         82 NLK-PVDRVEG-----ADPESLDKKLQNQ  104 (213)
Q Consensus        82 ~g~-~~~~~~g-----~~~~~l~~~i~~~  104 (213)
                      ++. ....+.|     .+..+|.+||...
T Consensus        94 kfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           94 LVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             TTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             cCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            764 2223444     4556899999865

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.62  E-value=2.2e-07  Score=81.68  Aligned_cols=164  Identities=19%  Similarity=0.110  Sum_probs=111.1

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCC-cccccC-CC
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKP-VDRVEG-AD   93 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~-~~~~~g-~~   93 (213)
                      .-.+++.+.++.+.|..|..+...++++++.-+  ++.+...|  .. .       ...|+|.+.++|+. --++.| +.
T Consensus        16 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~~~--~~-~-------~~~p~~~~~~~~~~~~i~f~g~p~   83 (521)
T 1hyu_A           16 KLTKPVELIATLDDSAKSAEIKELLAEIAELSD--KVTFKEDN--TL-P-------VRKPSFLITNPGSQQGPRFAGSPL   83 (521)
T ss_dssp             TCCSCEEEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEECT--TS-S-------SCSSEEEEECTTCCCSCEEESCCC
T ss_pred             hCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCC--ceEEEEcC--Cc-c-------cCCCEEEEecCCCcceEEEeccCc
Confidence            345677788888889999999999999987655  77764322  11 0       56899999987752 234555 45


Q ss_pred             chhHHHHHHHHhccCCCCCCcccccCCCcccccch-hhhhhhheeccCC-CCCCCC-------------CCceEEeccCC
Q psy15246         94 PESLDKKLQNQASTMKNQPSNITHVPYDTFDILQD-QEVREGLKIYSNW-PTYPQV-------------VPYDTFDILQD  158 (213)
Q Consensus        94 ~~~l~~~i~~~~~~~kg~p~~~~~~~~~~f~~l~~-~~~~~~v~~~apW-P~~~~~-------------v~~~~~d~~~~  158 (213)
                      ..++..+|...+. +.+.|.   .++...++.+.. .....++.|+++| |-++.+             +++..+|+...
T Consensus        84 g~e~~s~~~~l~~-~~~~~~---~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~  159 (521)
T 1hyu_A           84 GHEFTSLVLALLW-TGGHPS---KEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTF  159 (521)
T ss_dssp             GGGHHHHHHHHHH-HTTCCC---CSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTC
T ss_pred             chhHHHHHHHHHh-hcCCCC---CCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhh
Confidence            5689999988775 444443   234555554432 1222466788999 344433             67788999888


Q ss_pred             HHHHHHHHhhcCCCcccceEeCCeEeehH----HHHHHHHHcCCc
Q psy15246        159 QEVREGLKIYSNWPTYPQVYVNTELIGGL----DIIKELQVANKL  199 (213)
Q Consensus       159 ~~~~~~l~~~~~~pt~p~i~i~g~~~gg~----d~~~~~~~~~~l  199 (213)
                      +++.+.+    +..++|++++||+.++..    +.+.++.+.+.+
T Consensus       160 ~~~~~~~----~i~svPt~~i~g~~~~~G~~~~~~l~~~l~~~~~  200 (521)
T 1hyu_A          160 QNEITER----NVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAE  200 (521)
T ss_dssp             HHHHHHT----TCCSSSEEEETTEEEEESCCCHHHHHHHHCCSSC
T ss_pred             HHHHHHh----CCCccCEEEECCEEEecCCCCHHHHHHHHhhccc
Confidence            8776555    456899999999988743    667777666654

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.61  E-value=3.2e-08  Score=66.10  Aligned_cols=57  Identities=14%  Similarity=0.138  Sum_probs=45.6

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC--CchhHHHhC-CCccccEEEEEeCCCCc
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE--DLPKLSLNY-KVSAVPTFVILKNLKPV   86 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~--~~~~l~~~~-~I~~~Pti~~~~~g~~~   86 (213)
                      -++.|+++||++|+++++.+++.       ++.+..+|++  ...++.+++ ++.++|++.  .+|+.+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~-------~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i   66 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK-------GVKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHV   66 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH-------TCCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEEC
T ss_pred             eEEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEE
Confidence            36779999999999999999885       2456777887  566788889 999999984  477644

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.60  E-value=1.3e-07  Score=72.09  Aligned_cols=76  Identities=9%  Similarity=-0.024  Sum_probs=54.4

Q ss_pred             CCCeE-EEEEEcCCCHHHHh-HHHHHHHHHHHcCCCcEE-EEEEeCCC-----------------------chhHHHhCC
Q psy15246         17 KDKTA-VVHFYADWSDECKH-MNTLFDEMSKQSKYSQVV-FARCIAED-----------------------LPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~-vV~F~a~wC~~C~~-~~~~~~~l~~~~~~~~v~-~~~vd~~~-----------------------~~~l~~~~~   70 (213)
                      .++.+ ++.||++||++|+. ..|.+.++.++++..++. ++.|+.+.                       +.+++++||
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yG  134 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIG  134 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcC
Confidence            45654 55566999999999 699999999988754677 77777542                       345778888


Q ss_pred             Ccc-----------ccEEEEEeCCCCcccccCC
Q psy15246         71 VSA-----------VPTFVILKNLKPVDRVEGA   92 (213)
Q Consensus        71 I~~-----------~Pti~~~~~g~~~~~~~g~   92 (213)
                      +..           .|+.+++++|+......+.
T Consensus       135 v~~~~~~~g~g~~~~r~tfiIddG~I~~~~~~~  167 (184)
T 3uma_A          135 MEIDLSAGTLGIRSKRYSMLVEDGVVKALNIEE  167 (184)
T ss_dssp             CEEEEGGGTCEEEECCEEEEEETTEEEEEEECS
T ss_pred             CceeccccCCcccceeEEEEECCCEEEEEEEeC
Confidence            862           4656666888776655543

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.60  E-value=2.7e-09  Score=70.50  Aligned_cols=50  Identities=26%  Similarity=0.385  Sum_probs=38.8

Q ss_pred             CCceEEeccCCHHHHHHHHhhcC--CCcccceEeCCeEeehHHHHHHHHHcC
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSN--WPTYPQVYVNTELIGGLDIIKELQVAN  197 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~--~pt~p~i~i~g~~~gg~d~~~~~~~~~  197 (213)
                      +.|..+|+..+++..+.+.+..+  ..++|++|++|+.+||+|++.+++++|
T Consensus        31 i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~~g~~i~~~~~l~~~~~~~   82 (85)
T 1ego_A           31 FQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKEN   82 (85)
T ss_dssp             CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHHHHHHHHH
T ss_pred             ceEEEEecccChHHHHHHHHHhCCCCceeCeEEECCEEEECHHHHHHHHHHh
Confidence            67888888765422334554455  789999999999999999999998875

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.59  E-value=1.4e-07  Score=70.26  Aligned_cols=70  Identities=14%  Similarity=0.177  Sum_probs=55.2

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------C-chhHHHhCCCc
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------D-LPKLSLNYKVS   72 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------~-~~~l~~~~~I~   72 (213)
                      .+++++|.|| +.||++|....|.++++.++ .  ++.++.|..+                      . ..++++.|++.
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~  121 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-E--EGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVV  121 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-T--TSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCE
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-C--CCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCc
Confidence            5788999999 78999999999999999877 4  6777777654                      2 34677888887


Q ss_pred             c------ccEEEEEe-CCCCcccc
Q psy15246         73 A------VPTFVILK-NLKPVDRV   89 (213)
Q Consensus        73 ~------~Pti~~~~-~g~~~~~~   89 (213)
                      .      .|++++++ +|+.+...
T Consensus       122 ~~~~g~~~p~~~liD~~G~i~~~~  145 (166)
T 3p7x_A          122 MEELRLLARAVFVLDADNKVVYKE  145 (166)
T ss_dssp             ETTTTEECCEEEEECTTCBEEEEE
T ss_pred             cccCCceeeEEEEECCCCeEEEEE
Confidence            5      89988886 77766653

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.59  E-value=1.8e-07  Score=72.07  Aligned_cols=72  Identities=13%  Similarity=0.158  Sum_probs=57.1

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------C-chhHHHhCCCc
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------D-LPKLSLNYKVS   72 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------~-~~~l~~~~~I~   72 (213)
                      .+++++|.|| +.||++|....|.++++.++++  ++.++.|..+                      . ..++++.|++.
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~--~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~  154 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVA  154 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTST--TEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCE
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHhC--CCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCce
Confidence            5789999999 7899999999999999999994  7888888754                      2 34677778876


Q ss_pred             ---------cccEEEEEe-CCCCccccc
Q psy15246         73 ---------AVPTFVILK-NLKPVDRVE   90 (213)
Q Consensus        73 ---------~~Pti~~~~-~g~~~~~~~   90 (213)
                               ..|++++++ +|+.+....
T Consensus       155 ~~~~~~~g~~~p~~~lID~~G~I~~~~~  182 (200)
T 3zrd_A          155 ITEGPLAGLTARAVVVLDGQDNVIYSEL  182 (200)
T ss_dssp             ECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred             eecccCCCccccEEEEECCCCeEEEEEe
Confidence                     369888885 777665543

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.59  E-value=1.3e-07  Score=72.24  Aligned_cols=42  Identities=14%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCC
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .++++|.|++.|||+|+++.|.+   +++.+.+++ ++.|..++..
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~   58 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS   58 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence            47899999999999999999987   688888886 7888887754

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.58  E-value=9.3e-08  Score=76.54  Aligned_cols=88  Identities=15%  Similarity=0.191  Sum_probs=65.9

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .++.++|.|| +.||++|....|.+.++.+++++.++.++.|.++.                            ..++++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            5789999999 99999999999999999999975468888887652                            235778


Q ss_pred             hCCCc------cccEEEEEe-CCCCcccccC-----CCchhHHHHHHHH
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDRVEG-----ADPESLDKKLQNQ  104 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~~~g-----~~~~~l~~~i~~~  104 (213)
                      .|++.      .+|+++++. +|+......+     ...+++.+.|+.+
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            88886      589988886 7776655443     2233555555543

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.58  E-value=2.1e-08  Score=70.97  Aligned_cols=60  Identities=18%  Similarity=0.203  Sum_probs=46.0

Q ss_pred             EEEEEcCCCHHHHhH-HHHHHHHHHHcCCCcEEEEEEeCCCch-------hHHHhCCCccccEEEEEeCCCCcc
Q psy15246         22 VVHFYADWSDECKHM-NTLFDEMSKQSKYSQVVFARCIAEDLP-------KLSLNYKVSAVPTFVILKNLKPVD   87 (213)
Q Consensus        22 vV~F~a~wC~~C~~~-~~~~~~l~~~~~~~~v~~~~vd~~~~~-------~l~~~~~I~~~Pti~~~~~g~~~~   87 (213)
                      ++.|+++||++|+++ ++.++++..  .  .+.+..+|++.++       ++.+.+++.++|++  |.+|+.+.
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~--~--~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ig   94 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV--P--RSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YINGKHIG   94 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC--C--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC--C--CCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECCEEEE
Confidence            555999999999999 888776541  1  4667778887654       58889999999987  56887543

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.57  E-value=1.2e-07  Score=69.63  Aligned_cols=80  Identities=21%  Similarity=0.364  Sum_probs=60.3

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC------------------------------------
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA------------------------------------   59 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~------------------------------------   59 (213)
                      ...+.+|+.|+.++||+|+++.+.++++    .  ++.+...+.                                    
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~--~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~   85 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKM----T--DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFP   85 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTC----C--SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCC
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhc----C--ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence            4578899999999999999999988654    3  455554431                                    


Q ss_pred             ----------CCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         60 ----------EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        60 ----------~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                                +++.++++++||+++||+++ .+|+   ...|..+. +|.+.|++..
T Consensus        86 ~~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~  138 (147)
T 3gv1_A           86 VGGSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQ  138 (147)
T ss_dssp             TTCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTS
T ss_pred             CccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHH
Confidence                      12446789999999999988 6776   35676554 7999998875

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.57  E-value=8.1e-08  Score=66.31  Aligned_cols=63  Identities=11%  Similarity=0.069  Sum_probs=46.8

Q ss_pred             hhhcCCCeEEEEEEc-----CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCccccEEEEEeCC
Q psy15246         13 EKYGKDKTAVVHFYA-----DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSAVPTFVILKNL   83 (213)
Q Consensus        13 ~~~~~~~~~vV~F~a-----~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~~Pti~~~~~g   83 (213)
                      +.++.+ .++| |++     +||++|+++++.++++       ++.|..+|++++++    +...+++.++|++  |.+|
T Consensus        12 ~~i~~~-~vvv-f~~g~~~~~~C~~C~~~~~~L~~~-------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~i~g   80 (105)
T 2yan_A           12 VLTNKA-SVML-FMKGNKQEAKCGFSKQILEILNST-------GVEYETFDILEDEEVRQGLKAYSNWPTYPQL--YVKG   80 (105)
T ss_dssp             HHHTSS-SEEE-EESBCSSSBCTTHHHHHHHHHHHH-------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EETT
T ss_pred             HHhccC-CEEE-EEecCCCCCCCccHHHHHHHHHHC-------CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE--EECC
Confidence            344544 4444 777     9999999999999886       35577888888766    4556799999998  4578


Q ss_pred             CCc
Q psy15246         84 KPV   86 (213)
Q Consensus        84 ~~~   86 (213)
                      +.+
T Consensus        81 ~~i   83 (105)
T 2yan_A           81 ELV   83 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.57  E-value=1.6e-07  Score=64.50  Aligned_cols=72  Identities=15%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-----chhHH----HhCCCccccEEEEEeCCCCcccc
Q psy15246         19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-----LPKLS----LNYKVSAVPTFVILKNLKPVDRV   89 (213)
Q Consensus        19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-----~~~l~----~~~~I~~~Pti~~~~~g~~~~~~   89 (213)
                      +.-++.|+++|||+|+++++.++++..       .+-.+|++.     ..++.    +.+++.++|++++  +|.  ...
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~i-------~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~--~~i   89 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTKKLLTDLGV-------DFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE--KAI   89 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHHHTB-------CEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT--EEE
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCC-------CcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC--EEE
Confidence            344667999999999999999988632       233445543     12332    3479999999865  341  245


Q ss_pred             cCCCchhHHHHH
Q psy15246         90 EGADPESLDKKL  101 (213)
Q Consensus        90 ~g~~~~~l~~~i  101 (213)
                      .|++.++|.++|
T Consensus        90 gg~~~~~l~~~L  101 (103)
T 3nzn_A           90 VGFKEKEIRESL  101 (103)
T ss_dssp             ESCCHHHHHHHT
T ss_pred             EcCCHHHHHHHh
Confidence            688877777665

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.54  E-value=3.4e-08  Score=76.15  Aligned_cols=45  Identities=13%  Similarity=0.316  Sum_probs=41.2

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      ..+++||.||+.|||||+++.|.+   +++++.+++ ++.|.+++++.+
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~~~  159 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVNFM  159 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccCcC
Confidence            467899999999999999999999   999999987 899999999865

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.54  E-value=3.3e-08  Score=65.61  Aligned_cols=49  Identities=22%  Similarity=0.227  Sum_probs=39.6

Q ss_pred             CCceEEeccCC--HHHHHHHHhhcCC-----CcccceEeCCeEeehHHHHHHHHHc
Q psy15246        148 VPYDTFDILQD--QEVREGLKIYSNW-----PTYPQVYVNTELIGGLDIIKELQVA  196 (213)
Q Consensus       148 v~~~~~d~~~~--~~~~~~l~~~~~~-----pt~p~i~i~g~~~gg~d~~~~~~~~  196 (213)
                      ++|..++++.+  +...+++.+..+.     .++|++|++|+++||+|++.+++++
T Consensus        29 i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i~g~~i~g~~~i~~~~~~   84 (89)
T 3msz_A           29 IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTELKANADK   84 (89)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEETTEEEESHHHHHHTHHH
T ss_pred             CCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEECCEEEeChHHHHHHHHH
Confidence            66777766543  3355678778888     9999999999999999999998875

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.53  E-value=1.9e-07  Score=60.91  Aligned_cols=56  Identities=13%  Similarity=0.195  Sum_probs=42.6

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch----hHHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP----KLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~----~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|+++||++|+++++.+++.       ++.+..+|++.++    ++.+.+++.++|++.  .+|+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i   62 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI   62 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHC-------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence            5679999999999999999875       2446667776653    356788999999984  477643

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.53  E-value=5.6e-07  Score=68.40  Aligned_cols=42  Identities=19%  Similarity=0.307  Sum_probs=35.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA   59 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~   59 (213)
                      ..+..|+.|+.+|||+|..+.+.+.++.+.+++ ++.+..+..
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence            456789999999999999999999999999886 677765543

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.52  E-value=6.8e-07  Score=67.14  Aligned_cols=41  Identities=12%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEe
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCI   58 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd   58 (213)
                      .+++.||.|+.-.||+|+++.+.+.++.+++.+ ++.+..+.
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~-~~~~~~~~   60 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE-GAKFQKNH   60 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TCEEEEEE
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCC-ceEEEEEe
Confidence            467899999999999999999999999999886 55555443

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.51  E-value=2.7e-07  Score=70.40  Aligned_cols=42  Identities=17%  Similarity=0.336  Sum_probs=36.0

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA   59 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~   59 (213)
                      .+++.|+.|+.+|||+|..+.|.+.++.+.+++ ++.|..+..
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence            467899999999999999999999999999876 677765543

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.50  E-value=1.1e-06  Score=73.30  Aligned_cols=104  Identities=13%  Similarity=0.200  Sum_probs=79.7

Q ss_pred             eEEeCCchhhhhhcC--CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHH----HhCCCc-cc
Q psy15246          3 VVQISEELDVEKYGK--DKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLS----LNYKVS-AV   74 (213)
Q Consensus         3 v~~l~~~~~~~~~~~--~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~----~~~~I~-~~   74 (213)
                      +.++|.+.......+  ++..++.|+.+||++|..+.+.++++++++++ .++.|+.+|++..+.++    +.||+. ++
T Consensus       228 v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi~~~~  307 (350)
T 1sji_A          228 LRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFK  307 (350)
T ss_dssp             EEECCTTTHHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCSCTTS
T ss_pred             hhhcChhhHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCCCccC
Confidence            567888666666654  25556679999999999999999999999973 46999999999998888    889998 58


Q ss_pred             cEEEEEeC--CCCccc-cc----CCCchhHHHHHHHHhc
Q psy15246         75 PTFVILKN--LKPVDR-VE----GADPESLDKKLQNQAS  106 (213)
Q Consensus        75 Pti~~~~~--g~~~~~-~~----g~~~~~l~~~i~~~~~  106 (213)
                      |++++++.  +..... +.    ..+.+.|.+|+++.++
T Consensus       308 P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~  346 (350)
T 1sji_A          308 PQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLS  346 (350)
T ss_dssp             CEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHT
T ss_pred             CcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhc
Confidence            99999975  322221 21    2344579999999874

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.49  E-value=6.8e-07  Score=66.95  Aligned_cols=42  Identities=14%  Similarity=0.079  Sum_probs=34.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHc--CCCcEEEEEEeC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQS--KYSQVVFARCIA   59 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~--~~~~v~~~~vd~   59 (213)
                      ..+..|+.|+..+||+|+.+.+.+.++.+++  .+ ++.+...+.
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~   69 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLF   69 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeC
Confidence            4567899999999999999999999988888  55 677766553

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.48  E-value=3.3e-07  Score=69.12  Aligned_cols=74  Identities=12%  Similarity=0.012  Sum_probs=49.6

Q ss_pred             CCCeEEEEE-EcCCCHHHH-hHHHHHHHHHHHcCCCcEEEEE-EeCCC-----------------------chhHHHhCC
Q psy15246         17 KDKTAVVHF-YADWSDECK-HMNTLFDEMSKQSKYSQVVFAR-CIAED-----------------------LPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F-~a~wC~~C~-~~~~~~~~l~~~~~~~~v~~~~-vd~~~-----------------------~~~l~~~~~   70 (213)
                      .++.++|.| |++||++|. ...|.|.++.++++..++.++. |..+.                       +.+++++||
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yG  121 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETD  121 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHT
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhC
Confidence            566565555 599999999 5899999999888754566654 55432                       235667777


Q ss_pred             Cc-------------cccEEEEEeCCCCccccc
Q psy15246         71 VS-------------AVPTFVILKNLKPVDRVE   90 (213)
Q Consensus        71 I~-------------~~Pti~~~~~g~~~~~~~   90 (213)
                      +.             ..|+.+++++|+......
T Consensus       122 v~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v  154 (173)
T 3mng_A          122 LLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNV  154 (173)
T ss_dssp             CBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEE
T ss_pred             CCcccccccccCCcceEEEEEEEECCEEEEEEE
Confidence            65             347777777665544333

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.46  E-value=1.4e-07  Score=62.51  Aligned_cols=74  Identities=14%  Similarity=0.033  Sum_probs=51.0

Q ss_pred             eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc----hhHHHhCCC-----ccccEEEEEeCCCCccccc
Q psy15246         20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL----PKLSLNYKV-----SAVPTFVILKNLKPVDRVE   90 (213)
Q Consensus        20 ~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~----~~l~~~~~I-----~~~Pti~~~~~g~~~~~~~   90 (213)
                      ..++.|+++||++|++++..++++..     .+.+..+|.+.+    .++.+.++.     .++|++.+  +|+.+   .
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~i-----~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i---~   73 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENNI-----AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHI---G   73 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTC-----CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEE---E
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcCC-----CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEE---e
Confidence            34778999999999999998877532     344556666544    467888888     99999854  77644   2


Q ss_pred             CCCchhHHHHHHHHh
Q psy15246         91 GADPESLDKKLQNQA  105 (213)
Q Consensus        91 g~~~~~l~~~i~~~~  105 (213)
                      |  ..++.+++++.+
T Consensus        74 g--~~~i~~~~~~~~   86 (89)
T 3msz_A           74 G--FTELKANADKIL   86 (89)
T ss_dssp             S--HHHHHHTHHHHT
T ss_pred             C--hHHHHHHHHHHh
Confidence            3  235566665554

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.45  E-value=1.1e-06  Score=68.92  Aligned_cols=86  Identities=7%  Similarity=0.051  Sum_probs=63.2

Q ss_pred             eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-------------------------------chhHHHh
Q psy15246         20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-------------------------------LPKLSLN   68 (213)
Q Consensus        20 ~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-------------------------------~~~l~~~   68 (213)
                      .+++.||++||+.|....+.+.++.++++..++.++.|.++.                               +.++++.
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~  113 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL  113 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence            566667899999999999999999999875568888887652                               1346778


Q ss_pred             CCCc------------cccEEEEEe-CCCCccccc-----CCCchhHHHHHHHHh
Q psy15246         69 YKVS------------AVPTFVILK-NLKPVDRVE-----GADPESLDKKLQNQA  105 (213)
Q Consensus        69 ~~I~------------~~Pti~~~~-~g~~~~~~~-----g~~~~~l~~~i~~~~  105 (213)
                      |++.            .+|+++++. +|+......     |.+.+++.+.|+.+.
T Consensus       114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            8874            379998886 777655543     344457777777664

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.44  E-value=2.4e-07  Score=62.02  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|+++||++|+++++.+++.       ++.|..+|++++++    +.+.+++.++|++  |.+|+.+
T Consensus         8 v~ly~~~~C~~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i   67 (92)
T 2khp_A            8 VIIYTRPGCPYCARAKALLARK-------GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHV   67 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence            6779999999999999988874       35577788877654    4457899999975  4577643

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.43  E-value=4.9e-07  Score=70.76  Aligned_cols=86  Identities=10%  Similarity=0.121  Sum_probs=63.1

Q ss_pred             eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHHhCCC
Q psy15246         20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSLNYKV   71 (213)
Q Consensus        20 ~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~~~~I   71 (213)
                      .+++.||++||+.|....+.+.++.++++..++.++.|.++.                            +.++++.|++
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv  113 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI  113 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence            455556899999999999999999998875568888887652                            2346778888


Q ss_pred             c------------cccEEEEEe-CCCCccccc-----CCCchhHHHHHHHHh
Q psy15246         72 S------------AVPTFVILK-NLKPVDRVE-----GADPESLDKKLQNQA  105 (213)
Q Consensus        72 ~------------~~Pti~~~~-~g~~~~~~~-----g~~~~~l~~~i~~~~  105 (213)
                      .            .+|+++++. +|+......     |.+.++|.+.|+.+.
T Consensus       114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            4            478988886 777655543     344557777777664

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.37  E-value=1.5e-06  Score=65.11  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=34.8

Q ss_pred             CCCeEEEEEEcCCCH-HHHhHHHHHHHHHHHcC--CCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSD-ECKHMNTLFDEMSKQSK--YSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~-~C~~~~~~~~~l~~~~~--~~~v~~~~vd~~   60 (213)
                      .+++++|.||++||+ .|....+.+.++.+.++  +.++.++.|.+|
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            689999999999997 79988888888777664  235777777654

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.36  E-value=1.4e-06  Score=68.81  Aligned_cols=90  Identities=9%  Similarity=0.038  Sum_probs=65.4

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-----------------------------chhH
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-----------------------------LPKL   65 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-----------------------------~~~l   65 (213)
                      ..++.++|.|| ++||+.|....+.+.++.++++..++.++.|.++.                             ..++
T Consensus        27 ~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~v  106 (233)
T 2v2g_A           27 LGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETREL  106 (233)
T ss_dssp             HCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHH
T ss_pred             CCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHH
Confidence            33448889998 99999999999999999988864468888776552                             1246


Q ss_pred             HHhCCCc------------cccEEEEEe-CCCCccccc-----CCCchhHHHHHHHHh
Q psy15246         66 SLNYKVS------------AVPTFVILK-NLKPVDRVE-----GADPESLDKKLQNQA  105 (213)
Q Consensus        66 ~~~~~I~------------~~Pti~~~~-~g~~~~~~~-----g~~~~~l~~~i~~~~  105 (213)
                      ++.|++.            .+|+++++. +|+......     |.+.++|.+.|+.+.
T Consensus       107 a~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          107 AVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             HHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            7788875            579988886 776655443     344456777777654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.36  E-value=1.8e-07  Score=65.27  Aligned_cols=74  Identities=22%  Similarity=0.411  Sum_probs=55.3

Q ss_pred             hheeccCC--------CCCCCC-CCceEEeccCCHH---HHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchh
Q psy15246        134 GLKIYSNW--------PTYPQV-VPYDTFDILQDQE---VREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIP  201 (213)
Q Consensus       134 ~v~~~apW--------P~~~~~-v~~~~~d~~~~~~---~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~  201 (213)
                      ++.|+++|        |.+.++ .+|..+++..+++   .+..+.+..+..++|++|++|+.+||++.+.+++..+.|.+
T Consensus        22 vv~f~a~~C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~~~~g~~v~~~~~~~~~~~~~~l~~  101 (116)
T 2e7p_A           22 VVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLP  101 (116)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEECHHHHHHHHHTTCHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCEEECChHHHHHHHhCChHHH
Confidence            34488999        333222 6677888876533   34455555577889999999999999999999999999999


Q ss_pred             hccCCC
Q psy15246        202 TLDQPP  207 (213)
Q Consensus       202 ~~~~~~  207 (213)
                      +|+...
T Consensus       102 ~l~~~g  107 (116)
T 2e7p_A          102 LLQDAA  107 (116)
T ss_dssp             HHHHTT
T ss_pred             HHHHcc
Confidence            887654

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.35  E-value=7.1e-06  Score=60.05  Aligned_cols=104  Identities=12%  Similarity=0.144  Sum_probs=76.7

Q ss_pred             eEEeCCchhhhhhcCCCeEEEE-EEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC--CCchhHHHhCCCcc--ccEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVH-FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA--EDLPKLSLNYKVSA--VPTF   77 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~-F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~--~~~~~l~~~~~I~~--~Pti   77 (213)
                      |.++|.+.......++-+..+. |....-..-..+++.++++|+.+++ ++.|+.+|.  +.+..+++.||+..  +|++
T Consensus        16 V~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkg-ki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v   94 (147)
T 3bj5_A           16 VIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG-KILFAFIDSDHTDNQRILEFFGLKKEECPAV   94 (147)
T ss_dssp             EEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTT-TCEEEEECTTCGGGHHHHHHTTCCGGGCSEE
T ss_pred             eEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCC-ceEEEEEecchHhHHHHHHHcCCCcccCCEE
Confidence            6678887777777666666555 4433444466788999999999998 899999999  66777899999996  9999


Q ss_pred             EEEeC-CCCcccc---cCCCchhHHHHHHHHhcc
Q psy15246         78 VILKN-LKPVDRV---EGADPESLDKKLQNQAST  107 (213)
Q Consensus        78 ~~~~~-g~~~~~~---~g~~~~~l~~~i~~~~~~  107 (213)
                      +++.. +...++.   ...+.+.|.+|+++++..
T Consensus        95 ~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~G  128 (147)
T 3bj5_A           95 RLITLEEEMTKYKPESEELTAERITEFCHRFLEG  128 (147)
T ss_dssp             EEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTT
T ss_pred             EEEecccccccCCCCcccCCHHHHHHHHHHHHcC
Confidence            99874 3222222   234445799999999854

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=98.33  E-value=1.5e-06  Score=66.45  Aligned_cols=41  Identities=12%  Similarity=0.342  Sum_probs=34.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEe
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCI   58 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd   58 (213)
                      .+++.||.|+..|||+|+++.|.+   .++.+.+++ ++.|..++
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~   63 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYH   63 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEE
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCCC-CcEEEEEe
Confidence            357899999999999999999986   689999986 56666665

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.31  E-value=6.7e-07  Score=79.71  Aligned_cols=58  Identities=19%  Similarity=0.333  Sum_probs=53.3

Q ss_pred             CCceEEeccCC---HHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        148 VPYDTFDILQD---QEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       148 v~~~~~d~~~~---~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      ++|..+|++.+   ++.++.++++++++++|++|++|+++||+|++.++++.|+|.+++..
T Consensus        43 i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v~i~g~~igG~~~l~~~~~~g~L~~~l~~  103 (598)
T 2x8g_A           43 IKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNE  103 (598)
T ss_dssp             CCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEEEETTEEEECHHHHHHHHHTTCHHHHHHC
T ss_pred             CCcEEEEcccCcchHHHHHHHHHHhCCceeCEEEECCEEEEeeehhhhhhhcCcchhhccc
Confidence            78999999875   77889999889999999999999999999999999999999998864

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=98.30  E-value=1e-06  Score=67.04  Aligned_cols=39  Identities=13%  Similarity=0.251  Sum_probs=32.2

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA   59 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~   59 (213)
                      ++++||.|++.|||||+++.|.++++.+.+ +  +.|..+.+
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~--v~~~~~p~   60 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-G--TDIGKMHI   60 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-T--SCCEEEEC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh-C--CeEEEEec
Confidence            678999999999999999999999998887 3  44444443

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.27  E-value=5.3e-07  Score=67.64  Aligned_cols=57  Identities=11%  Similarity=0.127  Sum_probs=44.2

Q ss_pred             CeEEEEEEcCCCHHHHhH-HHHHHHHHHHcCCCcEE-EEEEeCCC---chhHHHhCCCc-ccc
Q psy15246         19 KTAVVHFYADWSDECKHM-NTLFDEMSKQSKYSQVV-FARCIAED---LPKLSLNYKVS-AVP   75 (213)
Q Consensus        19 ~~~vV~F~a~wC~~C~~~-~~~~~~l~~~~~~~~v~-~~~vd~~~---~~~l~~~~~I~-~~P   75 (213)
                      +.+++.||++||++|... .|.+.++.++++..++. ++.|+.+.   ....++++++. .+|
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp  107 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIE  107 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred             CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence            477788999999999998 99999998888643677 88888764   33456677773 565

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.26  E-value=1.1e-06  Score=59.28  Aligned_cols=44  Identities=23%  Similarity=0.287  Sum_probs=37.7

Q ss_pred             CCceEEeccCCHHHHHHHHhhc-CCCcccceEe-CCeEeehH--HHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYS-NWPTYPQVYV-NTELIGGL--DIIK  191 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~-~~pt~p~i~i-~g~~~gg~--d~~~  191 (213)
                      ++|.++|++.+++.++.+.+.+ |.+|+||||| ||++++|.  ++++
T Consensus        29 i~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~   76 (92)
T 2lqo_A           29 IAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVK   76 (92)
T ss_dssp             CCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHH
T ss_pred             CceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHH
Confidence            8999999999999999998876 7999999999 68888873  4443

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.20  E-value=8.6e-06  Score=64.71  Aligned_cols=96  Identities=16%  Similarity=0.202  Sum_probs=73.0

Q ss_pred             ceEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      ++.+|++ +.....+..++.++|-|+++|   |....+.|.++|..+++ ++.|+.+.   +.+++++|++.+ |++++|
T Consensus         7 ~v~~l~s~~~~~~~l~~~~v~vvgff~~~---~~~~~~~f~~~A~~lr~-~~~F~~~~---~~~v~~~~~~~~-p~i~~f   78 (252)
T 2h8l_A            7 ASVPLRTEEEFKKFISDKDASIVGFFDDS---FSEAHSEFLKAASNLRD-NYRFAHTN---VESLVNEYDDNG-EGIILF   78 (252)
T ss_dssp             CEEECCSHHHHHHHHTSSSCEEEEEESCT---TSHHHHHHHHHHHHTTT-TSCEEEEC---CHHHHHHHCSSS-EEEEEE
T ss_pred             CceeecCHHHHHHHhhcCCeEEEEEECCC---CChHHHHHHHHHHhccc-CcEEEEEC---hHHHHHHhCCCC-CcEEEE
Confidence            4778877 444555788889999999998   45567799999999976 78888773   577999999997 999999


Q ss_pred             eCC--------CCcccccC-CCchhHHHHHHHHh
Q psy15246         81 KNL--------KPVDRVEG-ADPESLDKKLQNQA  105 (213)
Q Consensus        81 ~~g--------~~~~~~~g-~~~~~l~~~i~~~~  105 (213)
                      +.+        ..+.+..| .+..+|.+||....
T Consensus        79 k~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~  112 (252)
T 2h8l_A           79 RPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENI  112 (252)
T ss_dssp             CCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHS
T ss_pred             cchhhcccccccccccCCCCcCHHHHHHHHHhcc
Confidence            853        22232044 44458999999975

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.19  E-value=1.2e-05  Score=67.75  Aligned_cols=104  Identities=13%  Similarity=0.036  Sum_probs=79.8

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCC-HHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc--cccEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWS-DECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS--AVPTFVI   79 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC-~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~--~~Pti~~   79 (213)
                      +.++|.+.....+..+.++++.|+.++| ..|+.+...+.+++..+++ ++.|+.+|++..+.+++.+|+.  .+|.+++
T Consensus       221 v~elt~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~-~i~f~~id~~~~~~~~~~~gl~~~~~P~i~i  299 (382)
T 2r2j_A          221 VREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKG-TINFLHADCDKFRHPLLHIQKTPADCPVIAI  299 (382)
T ss_dssp             SEECCHHHHHHHHTTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTT-TSEEEEEETTTTHHHHHHTTCCGGGCSEEEE
T ss_pred             eEecChhhHHHHhcCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCC-eeEEEEEchHHhHHHHHHcCCCccCCCEEEE
Confidence            4567776667777888999999999998 4566777777887777876 8999999999999999999997  6899998


Q ss_pred             EeCCCCccc--ccCC-CchhHHHHHHHHhcc
Q psy15246         80 LKNLKPVDR--VEGA-DPESLDKKLQNQAST  107 (213)
Q Consensus        80 ~~~g~~~~~--~~g~-~~~~l~~~i~~~~~~  107 (213)
                      +..++...+  ..+. +.+.|.+|+++.++.
T Consensus       300 ~~~~~~y~~~~~~~~~~~~~i~~F~~d~~~G  330 (382)
T 2r2j_A          300 DSFRHMYVFGDFKDVLIPGKLKQFVFDLHSG  330 (382)
T ss_dssp             ECSSCEEECCCSGGGGSTTHHHHHHHHHHHT
T ss_pred             EcchhcCCCCccccccCHHHHHHHHHHHHCC
Confidence            865442111  1122 235799999999865

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=98.18  E-value=7.9e-07  Score=63.75  Aligned_cols=59  Identities=20%  Similarity=0.201  Sum_probs=42.2

Q ss_pred             EEEEEcCCCHHHHhH-HHHHHHHHHHcCCCcEEEEEEeCCCc-------hhHHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHM-NTLFDEMSKQSKYSQVVFARCIAEDL-------PKLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~-~~~~~~l~~~~~~~~v~~~~vd~~~~-------~~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|+++|||+|++. ++.++++...    .+.+..+|++.+       .++.+.+|+.++|++  |.+|+.+
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~~~~~----~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--fi~g~~i  105 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQELNVP----KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--YINGKHI  105 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTSCCC----GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEE
T ss_pred             EEEEECCCCCchHHHHHHHHHhcCcc----CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence            567999999999999 8888775421    133444555433       367888999999996  5677654

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.17  E-value=9.7e-06  Score=61.29  Aligned_cols=89  Identities=11%  Similarity=0.077  Sum_probs=66.0

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCch---------------hHHHh---CCCccc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDLP---------------KLSLN---YKVSAV   74 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~~---------------~l~~~---~~I~~~   74 (213)
                      ...|.++|+++++||..|..+....   +++.+.+.. ++.+...|.+...               .++..   |++.++
T Consensus        53 ~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~-nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~  131 (178)
T 2ec4_A           53 RDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ-NFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQF  131 (178)
T ss_dssp             TTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH-TEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTC
T ss_pred             hhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc-CEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCC
Confidence            4689999999999999999997543   445555554 7888899988654               34443   999999


Q ss_pred             cEEEEEe-CC---CCcccccCCCch-hHHHHHHHHh
Q psy15246         75 PTFVILK-NL---KPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        75 Pti~~~~-~g---~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      |++.++. .+   +.+.+..|..+. ++...+.+.+
T Consensus       132 P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~  167 (178)
T 2ec4_A          132 PLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAM  167 (178)
T ss_dssp             SEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            9999995 22   456778887665 6777666554

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.17  E-value=1.1e-05  Score=67.71  Aligned_cols=104  Identities=13%  Similarity=0.221  Sum_probs=79.3

Q ss_pred             eEEeCCchhhhhhcC--CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCC-cEEEEEEeCCCchhHH----HhCCCc-cc
Q psy15246          3 VVQISEELDVEKYGK--DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS-QVVFARCIAEDLPKLS----LNYKVS-AV   74 (213)
Q Consensus         3 v~~l~~~~~~~~~~~--~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~-~v~~~~vd~~~~~~l~----~~~~I~-~~   74 (213)
                      |.++|.+.....+.+  .++.++.|+.++|+.|.++.+.++++|+.+++. ++.|+.+|++..+..+    +.||+. .+
T Consensus       230 v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~  309 (367)
T 3us3_A          230 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSA  309 (367)
T ss_dssp             EEECCGGGHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTS
T ss_pred             eeecChhhHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCC
Confidence            567787665555542  456778899999999999999999999999963 5999999999877543    458988 89


Q ss_pred             cEEEEEeCCCC--ccc-cc----CCCchhHHHHHHHHhc
Q psy15246         75 PTFVILKNLKP--VDR-VE----GADPESLDKKLQNQAS  106 (213)
Q Consensus        75 Pti~~~~~g~~--~~~-~~----g~~~~~l~~~i~~~~~  106 (213)
                      |+++++...+.  ..+ +.    ..+.++|.+|+++.++
T Consensus       310 P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~  348 (367)
T 3us3_A          310 PQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLE  348 (367)
T ss_dssp             CEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHc
Confidence            99999974432  122 22    2455589999999975

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.15  E-value=2.3e-06  Score=59.86  Aligned_cols=64  Identities=20%  Similarity=0.222  Sum_probs=44.2

Q ss_pred             hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--c-----hhHHHhCCCccccEEEEEeCCC
Q psy15246         12 VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--L-----PKLSLNYKVSAVPTFVILKNLK   84 (213)
Q Consensus        12 ~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--~-----~~l~~~~~I~~~Pti~~~~~g~   84 (213)
                      .+.+++++  ++.|+++|||+|++.++.++++       ++.+..+|++.  +     ..+.+..|..++|++.+  +|+
T Consensus        11 ~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~-------~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~g~   79 (114)
T 3h8q_A           11 VGLIERSR--VVIFSKSYCPHSTRVKELFSSL-------GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--NKV   79 (114)
T ss_dssp             HHHHHHCS--EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--TTE
T ss_pred             HHHhccCC--EEEEEcCCCCcHHHHHHHHHHc-------CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--CCE
Confidence            33444444  3349999999999999999885       34455666664  2     23567788999999854  776


Q ss_pred             Cc
Q psy15246         85 PV   86 (213)
Q Consensus        85 ~~   86 (213)
                      .+
T Consensus        80 ~i   81 (114)
T 3h8q_A           80 HV   81 (114)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.15  E-value=4.3e-06  Score=57.93  Aligned_cols=65  Identities=11%  Similarity=-0.003  Sum_probs=47.0

Q ss_pred             hhhhhcCCCeEEEEEEc-----CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCccccEEEEEe
Q psy15246         11 DVEKYGKDKTAVVHFYA-----DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSAVPTFVILK   81 (213)
Q Consensus        11 ~~~~~~~~~~~vV~F~a-----~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~~Pti~~~~   81 (213)
                      ..+.+++++ + +.|+.     +||++|++.++.++++       ++.+..+|++++++    +.+.++..++|++  |.
T Consensus         8 ~~~~i~~~~-v-vvy~~g~~~~~~Cp~C~~ak~~L~~~-------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i--fi   76 (109)
T 1wik_A            8 LKVLTNKAS-V-MLFMKGNKQEAKCGFSKQILEILNST-------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL--YV   76 (109)
T ss_dssp             HHHHHTTSS-E-EEEESSTTTCCCSSTHHHHHHHHHHT-------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE--EC
T ss_pred             HHHHhccCC-E-EEEEecCCCCCCCchHHHHHHHHHHc-------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE--EE
Confidence            344455554 3 44677     9999999999999874       46688889888765    4456688999985  66


Q ss_pred             CCCCc
Q psy15246         82 NLKPV   86 (213)
Q Consensus        82 ~g~~~   86 (213)
                      +|+.+
T Consensus        77 ~g~~i   81 (109)
T 1wik_A           77 RGDLV   81 (109)
T ss_dssp             SSSEE
T ss_pred             CCEEE
Confidence            88754

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=98.03  E-value=1.6e-05  Score=63.15  Aligned_cols=96  Identities=10%  Similarity=0.114  Sum_probs=72.7

Q ss_pred             ceEEeCC-chhhhhhcC-CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          2 SVVQISE-ELDVEKYGK-DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~-~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +|.+|++ +...+.+.. ++.++|-|++++|   ....+.|.++|+.+++ .+.|+.+.   +.+++++|++.+ |++++
T Consensus         7 ~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~-~~~F~~t~---~~~v~~~~~v~~-p~ivl   78 (250)
T 3ec3_A            7 PSKEILTLKQVQEFLKDGDDVVILGVFQGVG---DPGYLQYQDAANTLRE-DYKFHHTF---STEIAKFLKVSL-GKLVL   78 (250)
T ss_dssp             SSEECCCHHHHHHHHHHCSSCEEEEECSCTT---CHHHHHHHHHHHHHTT-TCCEEEEC---CHHHHHHHTCCS-SEEEE
T ss_pred             CceecCCHHHHHHHHhcCCCeEEEEEEcCCC---chHHHHHHHHHHhhhc-CcEEEEEC---cHHHHHHcCCCC-CeEEE
Confidence            4678887 444445666 8899999999985   5677899999999976 78898763   678999999988 99999


Q ss_pred             EeCC--------CCccccc-C-CCchhHHHHHHHHh
Q psy15246         80 LKNL--------KPVDRVE-G-ADPESLDKKLQNQA  105 (213)
Q Consensus        80 ~~~g--------~~~~~~~-g-~~~~~l~~~i~~~~  105 (213)
                      |+.+        ..+.+.. | .+..+|.+||....
T Consensus        79 fk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~  114 (250)
T 3ec3_A           79 MQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHA  114 (250)
T ss_dssp             ECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EecchhhccccccceeccCCCCCCHHHHHHHHHHcC
Confidence            9853        2233332 2 44458999999885

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.97  E-value=2.2e-06  Score=55.67  Aligned_cols=40  Identities=15%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLD  188 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d  188 (213)
                      ++|..+|++.+++..+.+++ .+..++|+++++|+.+||++
T Consensus        26 i~~~~vdi~~~~~~~~~~~~-~g~~~vP~~~~~g~~~~g~~   65 (81)
T 1h75_A           26 FDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFR   65 (81)
T ss_dssp             CCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCC
T ss_pred             CCeEEEECCCCHHHHHHHHH-hCCCccCEEEECCEEEecCC
Confidence            78999999999888877775 47889999999999999987

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=97.94  E-value=2.7e-05  Score=60.95  Aligned_cols=84  Identities=12%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             CCCeEEEEEEcCC-CHHHH-----hHHHHHHHHHHHcCCCcEEEEEEeCC----------------------C-chhHHH
Q psy15246         17 KDKTAVVHFYADW-SDECK-----HMNTLFDEMSKQSKYSQVVFARCIAE----------------------D-LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~a~w-C~~C~-----~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------~-~~~l~~   67 (213)
                      .+++++|.||+.| |+.|.     ...+.|.++   +.  ++.++.|..+                      . +.++++
T Consensus        47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~--gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak  121 (224)
T 3keb_A           47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WP--HLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHK  121 (224)
T ss_dssp             TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CT--TSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHH
T ss_pred             CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cC--CCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHH
Confidence            4788999999988 99999     767777666   54  5677777643                      2 367889


Q ss_pred             hCCCcc---------ccEEEEEe-CCCCcccccC------CCchhHHHHHHHHh
Q psy15246         68 NYKVSA---------VPTFVILK-NLKPVDRVEG------ADPESLDKKLQNQA  105 (213)
Q Consensus        68 ~~~I~~---------~Pti~~~~-~g~~~~~~~g------~~~~~l~~~i~~~~  105 (213)
                      .|||..         .|++++++ +|+.......      .+.+++.+.|+...
T Consensus       122 ~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~  175 (224)
T 3keb_A          122 RYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGE  175 (224)
T ss_dssp             HTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence            999875         79888886 7765543221      22335666666554

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.88  E-value=3.4e-06  Score=57.79  Aligned_cols=56  Identities=14%  Similarity=0.145  Sum_probs=41.0

Q ss_pred             hheeccCC-CCCCCC--------CCceEEeccCC-----HHHHHHHHhhcCCCcccceEeCC-eEeehHHH
Q psy15246        134 GLKIYSNW-PTYPQV--------VPYDTFDILQD-----QEVREGLKIYSNWPTYPQVYVNT-ELIGGLDI  189 (213)
Q Consensus       134 ~v~~~apW-P~~~~~--------v~~~~~d~~~~-----~~~~~~l~~~~~~pt~p~i~i~g-~~~gg~d~  189 (213)
                      ++.|.++| |.+.++        ++|..+|++.+     +++.+.+++.+++.++|+++++| +++||+|.
T Consensus        24 v~ly~~~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~   94 (103)
T 3nzn_A           24 VIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKE   94 (103)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCH
T ss_pred             EEEEcCCCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCH
Confidence            44455676 333333        78899999863     24455566678999999999999 99999985

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=97.82  E-value=2e-06  Score=62.19  Aligned_cols=68  Identities=13%  Similarity=0.076  Sum_probs=50.6

Q ss_pred             cccCCCccccc-chhhhhhhheeccCCC----------CCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccce
Q psy15246        116 THVPYDTFDIL-QDQEVREGLKIYSNWP----------TYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQV  177 (213)
Q Consensus       116 ~~~~~~~f~~l-~~~~~~~~v~~~apWP----------~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i  177 (213)
                      +.++.++|+.. .......+|.|||+|.          .++++       ++|+++|+++++++...++ +.++||+ .+
T Consensus        18 ~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~yg-V~siPTl-il   95 (137)
T 2qsi_A           18 TLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFG-VAVCPSL-AV   95 (137)
T ss_dssp             EEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHT-CCSSSEE-EE
T ss_pred             cccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcC-CccCCEE-EE
Confidence            45677888733 3333258899999873          23333       7899999999999988877 7889999 79


Q ss_pred             EeCCeEee
Q psy15246        178 YVNTELIG  185 (213)
Q Consensus       178 ~i~g~~~g  185 (213)
                      |.||+.++
T Consensus        96 FkdG~~v~  103 (137)
T 2qsi_A           96 VQPERTLG  103 (137)
T ss_dssp             EECCEEEE
T ss_pred             EECCEEEE
Confidence            99998654

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.80  E-value=8.6e-05  Score=57.71  Aligned_cols=88  Identities=16%  Similarity=0.094  Sum_probs=63.8

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------------CchhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------------DLPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~~l~~   67 (213)
                      .++.+|+.|| ++||+.|....+.|++...+++..++.++.|.++                            .+.++++
T Consensus        51 ~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak  130 (216)
T 3sbc_A           51 KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSR  130 (216)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHHHH
Confidence            4789999999 9999999999999999999987556888888765                            2346888


Q ss_pred             hCCCc------cccEEEEEe-CCCCcc-----cccCCCchhHHHHHHHH
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVD-----RVEGADPESLDKKLQNQ  104 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~-----~~~g~~~~~l~~~i~~~  104 (213)
                      .|||.      .++.+.+++ +|+...     .-.|++.+++.+.|+.+
T Consensus       131 ~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~Al  179 (216)
T 3sbc_A          131 DYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF  179 (216)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            99884      345666665 564322     12356666666666654

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=97.78  E-value=9.2e-05  Score=58.68  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=71.0

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCH---H-HHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCC----c
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSD---E-CKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKV----S   72 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~---~-C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I----~   72 (213)
                      |.++|.++....  .+++++|.|+...+.   . ...+...+.++|+.+++  ..+.|+.+|++....+++.||+    .
T Consensus       116 v~e~t~~n~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~  193 (252)
T 2h8l_A          116 CPHMTEDNKDLI--QGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAG  193 (252)
T ss_dssp             SCEECTTTHHHH--SSSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSC
T ss_pred             eeecccccHhhh--cCCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccC
Confidence            557777665554  345566677754332   2 22577888889999985  1399999999999999999999    3


Q ss_pred             cccEEEEEeC-CCCcccccCCCchh--HHHHHHHHhcc
Q psy15246         73 AVPTFVILKN-LKPVDRVEGADPES--LDKKLQNQAST  107 (213)
Q Consensus        73 ~~Pti~~~~~-g~~~~~~~g~~~~~--l~~~i~~~~~~  107 (213)
                      .+|.++++.. ++........+.+.  |.+|+++.+..
T Consensus       194 ~~P~v~i~~~~~~ky~~~~~~t~~~~~i~~F~~~~~~G  231 (252)
T 2h8l_A          194 EIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDG  231 (252)
T ss_dssp             SSCEEEEECTTSCEEECCSCCCTTSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCcCcEecCCcccCcchHHHHHHHHHHHCC
Confidence            6999999853 33221112234456  99999999853

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=97.74  E-value=0.00026  Score=54.34  Aligned_cols=44  Identities=20%  Similarity=0.191  Sum_probs=34.0

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHH-HHHHHHcCC-CcEEEEEEeC
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLF-DEMSKQSKY-SQVVFARCIA   59 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~-~~l~~~~~~-~~v~~~~vd~   59 (213)
                      ...+..|+.|+...||+|+++.+.+ ..+.+.|.+ .+|.|...+.
T Consensus        27 ~~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~   72 (202)
T 3gha_A           27 DDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNV   72 (202)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEEC
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEec
Confidence            3457789999999999999999876 567677742 2688887763

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.72  E-value=1.1e-05  Score=51.36  Aligned_cols=40  Identities=30%  Similarity=0.420  Sum_probs=35.2

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLD  188 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d  188 (213)
                      ++|..+|+..+++..+.+++ .+..++|+++++|+.+||++
T Consensus        26 i~~~~~di~~~~~~~~~~~~-~~~~~vP~l~~~g~~~~g~~   65 (75)
T 1r7h_A           26 LAYNTVDISLDDEARDYVMA-LGYVQAPVVEVDGEHWSGFR   65 (75)
T ss_dssp             CCCEEEETTTCHHHHHHHHH-TTCBCCCEEEETTEEEESCC
T ss_pred             CCcEEEECCCCHHHHHHHHH-cCCCccCEEEECCeEEcCCC
Confidence            78999999999888777764 67889999999999999986

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=97.69  E-value=6.4e-06  Score=56.69  Aligned_cols=51  Identities=16%  Similarity=0.381  Sum_probs=41.2

Q ss_pred             hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ..+|.|||+|        |.+.++      +.|..+|+++++++++.+. ..++||+ .+|.+|+.+
T Consensus        22 ~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~-V~~~PT~-~~~~~G~~v   86 (105)
T 3zzx_A           22 LVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQ-IACMPTF-LFMKNGQKL   86 (105)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTT-CCBSSEE-EEEETTEEE
T ss_pred             EEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcC-CCeecEE-EEEECCEEE
Confidence            3688999999        555544      6789999999999988776 7788998 788899754

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=97.68  E-value=0.00041  Score=54.24  Aligned_cols=42  Identities=7%  Similarity=0.138  Sum_probs=32.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHH-HHHHHHHcCC-CcEEEEEEe
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTL-FDEMSKQSKY-SQVVFARCI   58 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~-~~~l~~~~~~-~~v~~~~vd   58 (213)
                      ..+..|+.|+...||+|+++.+. +.++.+++.+ .+|.+...+
T Consensus        38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~   81 (226)
T 3f4s_A           38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRH   81 (226)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence            45678999999999999999986 4778877731 267777665

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.68  E-value=6.9e-06  Score=54.70  Aligned_cols=41  Identities=20%  Similarity=0.198  Sum_probs=33.8

Q ss_pred             CCceEEeccC-----CHHHHHHHHhhcCCCcccceEeCCeEeehHH
Q psy15246        148 VPYDTFDILQ-----DQEVREGLKIYSNWPTYPQVYVNTELIGGLD  188 (213)
Q Consensus       148 v~~~~~d~~~-----~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d  188 (213)
                      ++|..+|++.     +++....+.+..++.++|+++++|+++||+|
T Consensus        37 i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~   82 (92)
T 3ic4_A           37 VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYN   82 (92)
T ss_dssp             CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCC
T ss_pred             CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCC
Confidence            7899999984     2334577777788899999999999999986

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=97.65  E-value=0.00026  Score=58.38  Aligned_cols=86  Identities=8%  Similarity=0.047  Sum_probs=60.8

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCc--
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVS--   72 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~--   72 (213)
                      .++.+++.|| +.||+.|....+.|.+  ..+.  ++.++.|+.|                     .+.++++.|||.  
T Consensus        23 ~Gk~vvl~F~p~~~tp~C~~e~~~~~~--~~~~--~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ygv~~~   98 (322)
T 4eo3_A           23 YGKYTILFFFPKAGTSGSTREAVEFSR--ENFE--KAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLEN   98 (322)
T ss_dssp             TTSEEEEEECSSTTSHHHHHHHHHHHH--SCCT--TEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHTTCEET
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHH--HhhC--CCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhcCCCCC
Confidence            5789999999 6899999987777654  2233  6778777754                     455789999994  


Q ss_pred             --cccEEEEEe-CCCCcccccCCCc----hhHHHHHHHHhc
Q psy15246         73 --AVPTFVILK-NLKPVDRVEGADP----ESLDKKLQNQAS  106 (213)
Q Consensus        73 --~~Pti~~~~-~g~~~~~~~g~~~----~~l~~~i~~~~~  106 (213)
                        .+|+..+++ +|+....+.+...    +++.+.+++...
T Consensus        99 ~~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~  139 (322)
T 4eo3_A           99 GKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIE  139 (322)
T ss_dssp             TEECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHH
T ss_pred             CcCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhch
Confidence              577777775 7876655555444    367777776653

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=97.63  E-value=7.5e-06  Score=57.78  Aligned_cols=69  Identities=23%  Similarity=0.395  Sum_probs=50.9

Q ss_pred             CCcccccCCCccccc-chhhhhhhheeccCC--------CCCCCC------------CCceEEeccCCHHHHHHHHhhcC
Q psy15246        112 PSNITHVPYDTFDIL-QDQEVREGLKIYSNW--------PTYPQV------------VPYDTFDILQDQEVREGLKIYSN  170 (213)
Q Consensus       112 p~~~~~~~~~~f~~l-~~~~~~~~v~~~apW--------P~~~~~------------v~~~~~d~~~~~~~~~~l~~~~~  170 (213)
                      ++.+..++..+|+.+ .+....++|.||+||        |.|.++            +.++.+|++.+.++++.+. ..+
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~   92 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMR-VSG   92 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTT-CCS
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcC-Ccc
Confidence            344567788888843 344556899999999        665544            6789999999999988776 677


Q ss_pred             CCcccceEeCCe
Q psy15246        171 WPTYPQVYVNTE  182 (213)
Q Consensus       171 ~pt~p~i~i~g~  182 (213)
                      +||+ .+|.+|+
T Consensus        93 ~Pt~-~~~~~g~  103 (127)
T 3h79_A           93 FPTM-RYYTRID  103 (127)
T ss_dssp             SSEE-EEECSSC
T ss_pred             CCEE-EEEeCCC
Confidence            8887 5666664

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=97.57  E-value=0.001  Score=52.50  Aligned_cols=102  Identities=20%  Similarity=0.191  Sum_probs=71.8

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcC-CC---H-HHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcc--cc
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYAD-WS---D-ECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSA--VP   75 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~-wC---~-~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~--~P   75 (213)
                      |.++|.++..... .+++.++.|+.. .+   . ....++..+.++|+.++  ++.|+.+|+++....++.||+..  +|
T Consensus       118 v~e~t~~n~~~~~-~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k--ki~F~~~d~~~~~~~l~~fgl~~~~~~  194 (250)
T 3ec3_A          118 VGHRKTSNDAKRY-SKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP--EYTFAIADEEDYATEVKDLGLSESGGD  194 (250)
T ss_dssp             EEEECTTTHHHHS-CSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT--TSEEEEEETTTTHHHHHHTTCSSCSCS
T ss_pred             eeecCccchhhhh-ccCccEEEEEecccccccchhHHHHHHHHHHHHHhhc--ceeEEEEcHHHHHHHHHHcCCCccCCC
Confidence            5678876666555 467777777753 33   3 34568899999999999  79999999999888899999974  44


Q ss_pred             -EEEEEeCC-CCcccc-cCCCchhHHHHHHHHhcc
Q psy15246         76 -TFVILKNL-KPVDRV-EGADPESLDKKLQNQAST  107 (213)
Q Consensus        76 -ti~~~~~g-~~~~~~-~g~~~~~l~~~i~~~~~~  107 (213)
                       .++++... +..... ...+.+.|.+|+++.++.
T Consensus       195 p~~~~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~G  229 (250)
T 3ec3_A          195 VNAAILDESGKKFAMEPEEFDSDALREFVMAFKKG  229 (250)
T ss_dssp             CEEEEECTTSCEEECCCCSCCHHHHHHHHHHHHTT
T ss_pred             cEEEEEcCCCceecCCcccCCHHHHHHHHHHHHCC
Confidence             66666532 221111 234555899999999754

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.00013  Score=52.01  Aligned_cols=69  Identities=13%  Similarity=0.029  Sum_probs=42.8

Q ss_pred             hhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-----hHHHhCCCccccEEEEEeCCCCc
Q psy15246         12 VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-----KLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        12 ~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-----~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      .++++.++  ++.|+.+|||+|++.+..|++....-.  .+..+.||.+.+.     .+.+..|..++|++  |-+|+.+
T Consensus         8 ~~ii~~~~--Vvvysk~~Cp~C~~ak~lL~~~~~~~v--~~~~idid~~~d~~~~~~~l~~~~G~~tVP~I--fI~G~~I   81 (127)
T 3l4n_A            8 SLILDLSP--IIIFSKSTCSYSKGMKELLENEYQFIP--NYYIIELDKHGHGEELQEYIKLVTGRGTVPNL--LVNGVSR   81 (127)
T ss_dssp             HHHHTSCS--EEEEECTTCHHHHHHHHHHHHHEEEES--CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEC
T ss_pred             HHHHccCC--EEEEEcCCCccHHHHHHHHHHhcccCC--CcEEEEecCCCCHHHHHHHHHHHcCCCCcceE--EECCEEE
Confidence            34445444  667999999999999998888421111  2334444443322     23344588999998  4477654

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=97.45  E-value=2.4e-05  Score=56.25  Aligned_cols=69  Identities=14%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             ccccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246        115 ITHVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      +..++..+|+ .+.+.....+|.||++|        |.++++       +.|..+|++.++++++.+. ..++||+ .+|
T Consensus         8 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~   85 (140)
T 3hz4_A            8 IIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYG-VQGTPTF-KFF   85 (140)
T ss_dssp             EEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHT-CCEESEE-EEE
T ss_pred             eEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCC-CCcCCEE-EEE
Confidence            3445666666 44444555889999999        444443       7889999999999888776 5666766 455


Q ss_pred             eCCeEee
Q psy15246        179 VNTELIG  185 (213)
Q Consensus       179 i~g~~~g  185 (213)
                      -+|+.++
T Consensus        86 ~~G~~~~   92 (140)
T 3hz4_A           86 CHGRPVW   92 (140)
T ss_dssp             ETTEEEE
T ss_pred             eCCcEEE
Confidence            6897653

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.44  E-value=9.8e-05  Score=52.66  Aligned_cols=73  Identities=18%  Similarity=0.277  Sum_probs=48.5

Q ss_pred             CCCCcccccCCCcccc-cchh-hhhhhheeccCC-CCCCCC---------------CCceEEeccCCHHHHHHHHhhc--
Q psy15246        110 NQPSNITHVPYDTFDI-LQDQ-EVREGLKIYSNW-PTYPQV---------------VPYDTFDILQDQEVREGLKIYS--  169 (213)
Q Consensus       110 g~p~~~~~~~~~~f~~-l~~~-~~~~~v~~~apW-P~~~~~---------------v~~~~~d~~~~~~~~~~l~~~~--  169 (213)
                      |.|+.+..++..+|+. +... ...++|.||++| |.+.++               +.|..+|++.++++++.+. ..  
T Consensus         4 g~~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~   82 (137)
T 2dj0_A            4 GSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYK-VSTS   82 (137)
T ss_dssp             CCCSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTT-CCCC
T ss_pred             CCCceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHcc-Cccc
Confidence            3445556677778873 3322 224689999999 444333               6778899999988887766 44  


Q ss_pred             ----CCCcccceEeCCeEe
Q psy15246        170 ----NWPTYPQVYVNTELI  184 (213)
Q Consensus       170 ----~~pt~p~i~i~g~~~  184 (213)
                          ++||+ .+|.+|+.+
T Consensus        83 ~~~~~~Pt~-~~~~~G~~~  100 (137)
T 2dj0_A           83 PLTKQLPTL-ILFQGGKEA  100 (137)
T ss_dssp             SSSSCSSEE-EEESSSSEE
T ss_pred             CCcCCCCEE-EEEECCEEE
Confidence                66776 455678754

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=97.41  E-value=0.00029  Score=46.33  Aligned_cols=57  Identities=11%  Similarity=0.041  Sum_probs=41.0

Q ss_pred             EEEEEcC----CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-----Cch----hHHHhCCCc-----cccEEEEEeCC
Q psy15246         22 VVHFYAD----WSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-----DLP----KLSLNYKVS-----AVPTFVILKNL   83 (213)
Q Consensus        22 vV~F~a~----wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-----~~~----~l~~~~~I~-----~~Pti~~~~~g   83 (213)
                      ++.|+.+    ||++|++.+..|++.       ++.+-.+|++     .++    ++.+..+..     ++|++.+ .+|
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~-------gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i-~~g   73 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK-------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDG   73 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT-------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTS
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc-------CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE-ECC
Confidence            4568899    999999999888874       3556667776     443    366677888     8998743 367


Q ss_pred             CCc
Q psy15246         84 KPV   86 (213)
Q Consensus        84 ~~~   86 (213)
                      +.+
T Consensus        74 ~~i   76 (87)
T 1aba_A           74 SHI   76 (87)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            543

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=97.41  E-value=3.7e-05  Score=52.17  Aligned_cols=63  Identities=16%  Similarity=0.045  Sum_probs=36.8

Q ss_pred             CCcccccchhhhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        120 YDTFDILQDQEVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       120 ~~~f~~l~~~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ...|+...+.....+|.||++|        |.+.++      +.+..+|++.++++++.+. ..++||+ .+|.+|+.+
T Consensus         8 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~G~~~   84 (105)
T 4euy_A            8 IEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYA-VFTGPTV-LLFYNGKEI   84 (105)
T ss_dssp             --CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC----------CCCCEE-EEEETTEEE
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcC-CCCCCEE-EEEeCCeEE
Confidence            3445433233445889999999        444333      6789999999998887776 6778887 566789876

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=97.38  E-value=3.7e-05  Score=53.40  Aligned_cols=67  Identities=18%  Similarity=0.338  Sum_probs=44.9

Q ss_pred             ccCCCccc-ccch-hhhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        117 HVPYDTFD-ILQD-QEVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       117 ~~~~~~f~-~l~~-~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      ..+.++|+ .+.+ .....+|.||++|        |.+.++      +.|..+|++.++++++.+. ..++||+ .+|.+
T Consensus        16 ~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~-v~~~Pt~-~~~~~   93 (116)
T 3qfa_C           16 IESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE-VKSMPTF-QFFKK   93 (116)
T ss_dssp             CCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTT-CCSSSEE-EEESS
T ss_pred             CCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcC-CccccEE-EEEeC
Confidence            34455565 3322 3445788999999        333332      7889999999998887775 6677776 45567


Q ss_pred             CeEee
Q psy15246        181 TELIG  185 (213)
Q Consensus       181 g~~~g  185 (213)
                      |+.++
T Consensus        94 G~~~~   98 (116)
T 3qfa_C           94 GQKVG   98 (116)
T ss_dssp             SSEEE
T ss_pred             CeEEE
Confidence            87543

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=97.38  E-value=0.00036  Score=55.90  Aligned_cols=80  Identities=18%  Similarity=0.202  Sum_probs=56.8

Q ss_pred             eEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC------------------CchhHHHhCCCccc--cEEEE
Q psy15246         20 TAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE------------------DLPKLSLNYKVSAV--PTFVI   79 (213)
Q Consensus        20 ~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~------------------~~~~l~~~~~I~~~--Pti~~   79 (213)
                      ..+..|++++|++|.+.+..+++++..+.   +....++.+                  ....+.+++|.+++  |.+++
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~~---vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI~I  120 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQKGD---VVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL  120 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHHTS---SEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhccCC---eeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEEEE
Confidence            57778999999999999999999987654   322222222                  12347889999998  99765


Q ss_pred             EeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         80 LKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                        +|+.  ...|.+..+|.+.|.+...
T Consensus       121 --ng~~--~v~G~d~~~l~~~l~~~~~  143 (270)
T 2axo_A          121 --NGRD--HVKGADVRGIYDRLDAFKR  143 (270)
T ss_dssp             --TTTE--EEETTCHHHHHHHHHHHHH
T ss_pred             --CCEE--eecCCCHHHHHHHHHHhhc
Confidence              6663  2467776678888876543

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=97.38  E-value=5.7e-06  Score=53.74  Aligned_cols=46  Identities=11%  Similarity=0.072  Sum_probs=30.6

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe--EeehHHHHHHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE--LIGGLDIIKELQ  194 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~--~~gg~d~~~~~~  194 (213)
                      +++..++++.+.+..+...+ .+..++|+++++|+  ++|+..+..+|.
T Consensus        31 ~~~~~~~v~~~~~~~~~~~~-~gv~~vPt~~i~g~~~~~G~~~~~~~l~   78 (80)
T 2k8s_A           31 YTVEIVHLGTDKARIAEAEK-AGVKSVPALVIDGAAFHINFGAGIDDLK   78 (80)
T ss_dssp             EEEEEEETTTCSSTHHHHHH-HTCCEEEEEEETTEEEEEEEEEEHHHHC
T ss_pred             CeEEEEEecCChhhHHHHHH-cCCCcCCEEEECCEEEEeccCcCHHHhh
Confidence            45667777753112222233 36789999999999  899977666653

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=97.37  E-value=4.4e-05  Score=55.26  Aligned_cols=68  Identities=16%  Similarity=0.139  Sum_probs=49.3

Q ss_pred             cccCCCcccccchhhhhhhheeccCC----------CCC-------CCC-CCceEEeccCCHHHHHHHHhhcCCCcccce
Q psy15246        116 THVPYDTFDILQDQEVREGLKIYSNW----------PTY-------PQV-VPYDTFDILQDQEVREGLKIYSNWPTYPQV  177 (213)
Q Consensus       116 ~~~~~~~f~~l~~~~~~~~v~~~apW----------P~~-------~~~-v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i  177 (213)
                      ..++.++|+.........+|.|+++|          |.+       +.- ++|+++|+++++++.+.++ +.++||+ .+
T Consensus        20 ~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~yg-V~sIPTl-il   97 (140)
T 2qgv_A           20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFG-AFRFPAT-LV   97 (140)
T ss_dssp             EECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHT-CCSSSEE-EE
T ss_pred             ccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcC-CccCCEE-EE
Confidence            45677888733333334778888987          222       222 5789999999999988887 7889999 89


Q ss_pred             EeCCeEee
Q psy15246        178 YVNTELIG  185 (213)
Q Consensus       178 ~i~g~~~g  185 (213)
                      |.||+.+|
T Consensus        98 Fk~G~~v~  105 (140)
T 2qgv_A           98 FTGGNYRG  105 (140)
T ss_dssp             EETTEEEE
T ss_pred             EECCEEEE
Confidence            99998655

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.37  E-value=0.00015  Score=58.23  Aligned_cols=68  Identities=13%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             ccccCCCcccc-cch-hhhhhhheeccCC-CCCCCC--------------CCceEEeccCCHHHHHHHHhhcCCCcccce
Q psy15246        115 ITHVPYDTFDI-LQD-QEVREGLKIYSNW-PTYPQV--------------VPYDTFDILQDQEVREGLKIYSNWPTYPQV  177 (213)
Q Consensus       115 ~~~~~~~~f~~-l~~-~~~~~~v~~~apW-P~~~~~--------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i  177 (213)
                      +..++..+|+. +.. .+..++|.||+|| |.+.++              +.|..+|++.++++++.+. +.++||+ .+
T Consensus         9 v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~   86 (287)
T 3qou_A            9 IVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFG-LRAIPTV-YL   86 (287)
T ss_dssp             EEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTT-CCSSSEE-EE
T ss_pred             cEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcC-CCCCCeE-EE
Confidence            45677788873 332 2456889999999 444444              7789999999998887776 6778887 56


Q ss_pred             EeCCeEe
Q psy15246        178 YVNTELI  184 (213)
Q Consensus       178 ~i~g~~~  184 (213)
                      |.+|+.+
T Consensus        87 ~~~G~~~   93 (287)
T 3qou_A           87 FQNGQPV   93 (287)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            6789744

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=97.35  E-value=0.00035  Score=52.55  Aligned_cols=57  Identities=7%  Similarity=0.127  Sum_probs=41.0

Q ss_pred             cCCCeEEEEEEcCCCHHHHh-HHHHHHHHHHHcCCCcE-EEEEEeCCC---chhHHHhCCCc
Q psy15246         16 GKDKTAVVHFYADWSDECKH-MNTLFDEMSKQSKYSQV-VFARCIAED---LPKLSLNYKVS   72 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~-~~~~~~~l~~~~~~~~v-~~~~vd~~~---~~~l~~~~~I~   72 (213)
                      .....+++.|++.|||.|.. ..+.|.+..++++..++ .++.|..+.   ....++++++.
T Consensus        46 ~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~  107 (176)
T 4f82_A           46 AGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTA  107 (176)
T ss_dssp             TTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             CCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence            33335566777999999999 99999999988874357 777777664   33455555554

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=97.35  E-value=0.00017  Score=51.91  Aligned_cols=58  Identities=9%  Similarity=-0.024  Sum_probs=41.0

Q ss_pred             eEEEEEEc----CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH----HhCCCccccEEEEEeCCCCc
Q psy15246         20 TAVVHFYA----DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS----LNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        20 ~~vV~F~a----~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~----~~~~I~~~Pti~~~~~g~~~   86 (213)
                      .++|+.++    +||++|++.+..|+++       ++.|..+|++.++++.    +..+..++|.+  |.+|+.+
T Consensus        36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-------gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V--fI~G~~i  101 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGFSAQAVQALAAC-------GERFAYVDILQNPDIRAELPKYANWPTFPQL--WVDGELV  101 (135)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHTT-------CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EETTEEE
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHc-------CCceEEEECCCCHHHHHHHHHHHCCCCcCEE--EECCEEE
Confidence            45554443    9999999999988764       3567778888766544    44578899986  5577644

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=97.34  E-value=0.00013  Score=50.15  Aligned_cols=68  Identities=10%  Similarity=0.238  Sum_probs=45.3

Q ss_pred             ccccCCCcccccchhhhhhhheeccCC-CCCCCC-----------------CCceEEeccCCHHHHHHHHhhcCCCcccc
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNW-PTYPQV-----------------VPYDTFDILQDQEVREGLKIYSNWPTYPQ  176 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apW-P~~~~~-----------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~  176 (213)
                      +..++..+|+.+.......+|.||++| |.+.++                 +.|..+|+..+.++++.+. ..++||+ .
T Consensus         9 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~Pt~-~   86 (120)
T 1mek_A            9 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYG-VRGYPTI-K   86 (120)
T ss_dssp             EEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHT-CCSSSEE-E
T ss_pred             cEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCC-CCcccEE-E
Confidence            345666777744444445789999999 444333                 5688999998877777665 5566666 4


Q ss_pred             eEeCCeEe
Q psy15246        177 VYVNTELI  184 (213)
Q Consensus       177 i~i~g~~~  184 (213)
                      +|.+|+.+
T Consensus        87 ~~~~g~~~   94 (120)
T 1mek_A           87 FFRNGDTA   94 (120)
T ss_dssp             EEESSCSS
T ss_pred             EEeCCCcC
Confidence            45588644

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=97.31  E-value=9.8e-05  Score=50.62  Aligned_cols=64  Identities=11%  Similarity=0.074  Sum_probs=41.4

Q ss_pred             CCCcccccchhhhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        119 PYDTFDILQDQEVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       119 ~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      +..+|+.+.. ....+|.||++|        |.+.++      +.|..+|+..++++++.+. ..+.||+ .+|.+|+.+
T Consensus         9 ~~~~f~~~~~-~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~G~~v   85 (110)
T 2l6c_A            9 TEAGMAHFEG-LSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELG-FERVPTL-VFIRDGKVA   85 (110)
T ss_dssp             GGCSHHHHTT-CSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTT-CCSSCEE-EEEESSSEE
T ss_pred             CHHHHHHHHc-CCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcC-CcccCEE-EEEECCEEE
Confidence            4455543332 234788999999        222222      6789999999888877665 4556665 344599877


Q ss_pred             e
Q psy15246        185 G  185 (213)
Q Consensus       185 g  185 (213)
                      +
T Consensus        86 ~   86 (110)
T 2l6c_A           86 K   86 (110)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=97.30  E-value=2.8e-05  Score=61.79  Aligned_cols=65  Identities=11%  Similarity=0.194  Sum_probs=49.9

Q ss_pred             ccccCCCcccccchhhhhhhheec--cCC----CCCCCC----------CCceEEeccC-----CHHHHHHHHhhc--CC
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIY--SNW----PTYPQV----------VPYDTFDILQ-----DQEVREGLKIYS--NW  171 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~--apW----P~~~~~----------v~~~~~d~~~-----~~~~~~~l~~~~--~~  171 (213)
                      +..++..+|+.+.+....++|.||  |||    |.|+++          +.|+.+||+.     ++++++.+. +.  ++
T Consensus        18 v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCgl~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~-V~~~~~   96 (248)
T 2c0g_A           18 CVDLDELSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK-VDDKNF   96 (248)
T ss_dssp             CEECCTTTHHHHHTTSSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT-CCTTSC
T ss_pred             cEECCHHHHHHHHhcCCCEEEEEECCCCCCccHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC-CCcCCC
Confidence            566788899854444455899999  999    566554          5689999998     889988876 77  89


Q ss_pred             CcccceEeCCe
Q psy15246        172 PTYPQVYVNTE  182 (213)
Q Consensus       172 pt~p~i~i~g~  182 (213)
                      ||+ .+|. |+
T Consensus        97 PTl-~~F~-G~  105 (248)
T 2c0g_A           97 PSI-FLFK-GN  105 (248)
T ss_dssp             CEE-EEES-SS
T ss_pred             CeE-EEEe-CC
Confidence            998 5666 76

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=97.30  E-value=0.0003  Score=48.77  Aligned_cols=55  Identities=9%  Similarity=0.065  Sum_probs=39.9

Q ss_pred             EEEEc-----CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHH----hCCCccccEEEEEeCCCCc
Q psy15246         23 VHFYA-----DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL----NYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        23 V~F~a-----~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~----~~~I~~~Pti~~~~~g~~~   86 (213)
                      |.|..     +|||+|++.+..|++.       ++.+..+|++.++++.+    ..|...+|.+  |-+|+.+
T Consensus        19 vlf~kg~~~~~~Cp~C~~ak~~L~~~-------gi~y~~~di~~d~~~~~~l~~~~g~~tvP~i--fi~g~~i   82 (111)
T 3zyw_A           19 MLFMKGTPQEPRCGFSKQMVEILHKH-------NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQL--YVSGELI   82 (111)
T ss_dssp             EEEESBCSSSBSSHHHHHHHHHHHHT-------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EETTEEE
T ss_pred             EEEEecCCCCCcchhHHHHHHHHHHc-------CCCeEEEECcCCHHHHHHHHHHHCCCCCCEE--EECCEEE
Confidence            34777     9999999999988874       35566778877665543    3478899997  4477543

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=97.29  E-value=3.6e-05  Score=60.91  Aligned_cols=80  Identities=13%  Similarity=0.202  Sum_probs=57.1

Q ss_pred             ccccCCCcccccchhhhhhhheecc--CC----CCCCCC---------CCceEEec-----cCCHHHHHHHHhhc--CCC
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYS--NW----PTYPQV---------VPYDTFDI-----LQDQEVREGLKIYS--NWP  172 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~a--pW----P~~~~~---------v~~~~~d~-----~~~~~~~~~l~~~~--~~p  172 (213)
                      +..++..+|+.+.+....++|.||+  ||    |.|.++         +.|+.+||     +.++++++.+. +.  ++|
T Consensus         7 v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCgl~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~-V~~~~~P   85 (240)
T 2qc7_A            7 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYK-LDKESYP   85 (240)
T ss_dssp             CEECCTTHHHHHGGGCSEEEEEECCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTT-CCGGGCS
T ss_pred             ceECCHHHHHHHHcCCCCEEEEEeCCCCCCcchHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcC-CCCCCCC
Confidence            4567888888444444558999999  99    666554         56899995     45789988876 77  899


Q ss_pred             cccceEeCCe------Eeeh--HHHHHHHHHc
Q psy15246        173 TYPQVYVNTE------LIGG--LDIIKELQVA  196 (213)
Q Consensus       173 t~p~i~i~g~------~~gg--~d~~~~~~~~  196 (213)
                      |+ .+|.+|+      +.|+  .+.+.+..++
T Consensus        86 Tl-~~f~~G~~~~~~~y~G~~~~~~L~~fi~~  116 (240)
T 2qc7_A           86 VF-YLFRDGDFENPVPYTGAVKVGAIQRWLKG  116 (240)
T ss_dssp             EE-EEEETTCSSCCEECCSCSCHHHHHHHHHH
T ss_pred             EE-EEEeCCCcCcceeecCCCCHHHHHHHHHH
Confidence            98 7888887      3354  4556655553

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=97.29  E-value=0.00018  Score=47.65  Aligned_cols=56  Identities=7%  Similarity=-0.082  Sum_probs=38.9

Q ss_pred             hheeccCC--------CCCCCC-CC-ceEEeccCCHHHHHHHHhhcCCCcccceE-eCCeEeehH---HHHHHHH
Q psy15246        134 GLKIYSNW--------PTYPQV-VP-YDTFDILQDQEVREGLKIYSNWPTYPQVY-VNTELIGGL---DIIKELQ  194 (213)
Q Consensus       134 ~v~~~apW--------P~~~~~-v~-~~~~d~~~~~~~~~~l~~~~~~pt~p~i~-i~g~~~gg~---d~~~~~~  194 (213)
                      ++.|++||        |.+.++ .. |.++|+++++++.+.+.    .. +|+++ ++|+.+||.   +.+.++.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~~~~vdid~~~~l~~~~g----~~-vPtl~~~~G~~v~g~~~~~~L~~~l   72 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDDAALESAYG----LR-VPVLRDPMGRELDWPFDAPRLRAWL   72 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCCEEEEECTTCHHHHHHHT----TT-CSEEECTTCCEEESCCCHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhheEEEECCCCHHHHHHhC----CC-cCeEEEECCEEEeCCCCHHHHHHHH
Confidence            45677888        444433 43 79999999998876553    34 88888 899999653   4555544

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=97.28  E-value=0.00042  Score=46.19  Aligned_cols=56  Identities=4%  Similarity=0.033  Sum_probs=40.5

Q ss_pred             EEEEEcCCCHHH------HhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCC--CccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDEC------KHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYK--VSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C------~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~--I~~~Pti~~~~~g~~~   86 (213)
                      ++.|+++||+.|      ++.+..+++.       ++.+..+|++.+++    +.+.+|  ...+|.+  |.+|+.+
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~i--fi~g~~i   71 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDGK-------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQI--VNGNHYC   71 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT-------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEE--EETTEEE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHHC-------CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEE--EECCEEE
Confidence            566899999999      7777666652       46678888887644    455778  7799987  4467543

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=97.28  E-value=7e-05  Score=51.40  Aligned_cols=72  Identities=21%  Similarity=0.352  Sum_probs=47.4

Q ss_pred             CCCcccccCCCcccccchhhhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccc
Q psy15246        111 QPSNITHVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQ  176 (213)
Q Consensus       111 ~p~~~~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~  176 (213)
                      +|+....++..+|+.+.+.+...+|.||++|        |.+.++      +.|..+|++.++++++.+. ..+.||+ .
T Consensus         7 ~~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~Pt~-~   84 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKEN-ITSMPTF-K   84 (112)
T ss_dssp             --CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTT-CCSSSEE-E
T ss_pred             ceeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcC-CCcccEE-E
Confidence            3444455666777644444455788999999        433332      7889999999888877665 5566776 4


Q ss_pred             eEeCCeEe
Q psy15246        177 VYVNTELI  184 (213)
Q Consensus       177 i~i~g~~~  184 (213)
                      +|.+|+.+
T Consensus        85 ~~~~G~~~   92 (112)
T 1syr_A           85 VYKNGSSV   92 (112)
T ss_dssp             EEETTEEE
T ss_pred             EEECCcEE
Confidence            55688753

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=97.26  E-value=9.4e-05  Score=50.62  Aligned_cols=65  Identities=18%  Similarity=0.320  Sum_probs=44.8

Q ss_pred             CCCcccccchhhhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        119 PYDTFDILQDQEVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       119 ~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      +...|+.........+|.||++|        |.+.++      +.|..+|++.+.++++.+. ..++||+ .+|-+|+.+
T Consensus        13 ~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~G~~~   90 (109)
T 3f3q_A           13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNE-VSAMPTL-LLFKNGKEV   90 (109)
T ss_dssp             SHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTT-CCSSSEE-EEEETTEEE
T ss_pred             CHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcC-CCccCEE-EEEECCEEE
Confidence            34555533333445788999999        444333      7889999999988887765 6677777 455688765


Q ss_pred             e
Q psy15246        185 G  185 (213)
Q Consensus       185 g  185 (213)
                      .
T Consensus        91 ~   91 (109)
T 3f3q_A           91 A   91 (109)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=97.23  E-value=5.3e-05  Score=51.56  Aligned_cols=67  Identities=12%  Similarity=0.184  Sum_probs=45.8

Q ss_pred             cccCCCcccccc-hhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        116 THVPYDTFDILQ-DQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       116 ~~~~~~~f~~l~-~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ..++..+|+... +.....+|.||++|        |.++++       +.|..+|++.++++++.+. ..++||+ .+|.
T Consensus         7 ~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~   84 (111)
T 3gnj_A            7 EKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFS-LKGVPQI-LYFK   84 (111)
T ss_dssp             EECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTT-CCSSCEE-EEEE
T ss_pred             eecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcC-CCcCCEE-EEEE
Confidence            445556666332 33455789999999        333333       7789999999998887765 5667777 5667


Q ss_pred             CCeEe
Q psy15246        180 NTELI  184 (213)
Q Consensus       180 ~g~~~  184 (213)
                      +|+.+
T Consensus        85 ~g~~~   89 (111)
T 3gnj_A           85 DGEYK   89 (111)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            89754

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.22  E-value=9.3e-05  Score=50.02  Aligned_cols=68  Identities=19%  Similarity=0.424  Sum_probs=48.1

Q ss_pred             ccccCCCcccccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      +..++...|+.+.......+|.||++|        |.+.++       +.|..+|++.++++++.+. ..++||+ .+|.
T Consensus         6 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-i~~~Pt~-~~~~   83 (109)
T 3tco_A            6 TLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYS-VLNIPTT-LIFV   83 (109)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTT-CCSSSEE-EEEE
T ss_pred             EEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcC-cccCCEE-EEEc
Confidence            345677777744444555788999999        333333       6789999999998887776 6677777 4667


Q ss_pred             CCeEe
Q psy15246        180 NTELI  184 (213)
Q Consensus       180 ~g~~~  184 (213)
                      +|+.+
T Consensus        84 ~g~~~   88 (109)
T 3tco_A           84 NGQLV   88 (109)
T ss_dssp             TTEEE
T ss_pred             CCcEE
Confidence            88744

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.21  E-value=0.00058  Score=47.22  Aligned_cols=57  Identities=11%  Similarity=0.068  Sum_probs=40.2

Q ss_pred             EEEEEEcCCCHHHH------hHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhC--------CCccccEEEEEeC
Q psy15246         21 AVVHFYADWSDECK------HMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNY--------KVSAVPTFVILKN   82 (213)
Q Consensus        21 ~vV~F~a~wC~~C~------~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~--------~I~~~Pti~~~~~   82 (213)
                      -++.|+.+||+.|+      +.+..|++.       ++.|..+|++.+++    +.+++        +...+|.+  |.+
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~-------gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~v--fi~   79 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEAN-------KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQI--FNG   79 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHHT-------TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEE--EET
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEE--EEC
Confidence            36678999999999      666666652       46788889887755    34444        77788986  456


Q ss_pred             CCCc
Q psy15246         83 LKPV   86 (213)
Q Consensus        83 g~~~   86 (213)
                      |+.+
T Consensus        80 g~~i   83 (111)
T 2ct6_A           80 DRYC   83 (111)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            6543

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.19  E-value=0.0006  Score=53.41  Aligned_cols=58  Identities=14%  Similarity=0.133  Sum_probs=43.3

Q ss_pred             CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc---hhHHHhCCCccccEEEEEeCCCC
Q psy15246         19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL---PKLSLNYKVSAVPTFVILKNLKP   85 (213)
Q Consensus        19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~---~~l~~~~~I~~~Pti~~~~~g~~   85 (213)
                      ...++.|+.+||++|++.+..+++.       ++.+-.+|++.+   .++.+.++..++|++.  .+|+.
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~--~~g~~  229 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK-------GLSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKH  229 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH-------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc-------CCceEEEECCCchHHHHHHHHhCCCCcCEEE--ECCEE
Confidence            4456778999999999999998875       244555666654   3478889999999974  46653

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=97.18  E-value=0.00017  Score=48.62  Aligned_cols=67  Identities=13%  Similarity=0.282  Sum_probs=45.0

Q ss_pred             cccCCCcccccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        116 THVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       116 ~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      ..++..+|+.+.+.+...+|.||++|        |.+.++       +.+..+|++.++++++.+. ..++||+ .+|-+
T Consensus         4 ~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~   81 (109)
T 2yzu_A            4 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYR-VMSIPTV-ILFKD   81 (109)
T ss_dssp             EECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTT-CCSSSEE-EEEET
T ss_pred             eEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCC-CCcCCEE-EEEeC
Confidence            34566677644444445888999999        333332       6788999999988877665 5566666 34458


Q ss_pred             CeEe
Q psy15246        181 TELI  184 (213)
Q Consensus       181 g~~~  184 (213)
                      |+.+
T Consensus        82 g~~~   85 (109)
T 2yzu_A           82 GQPV   85 (109)
T ss_dssp             TEEE
T ss_pred             CcEe
Confidence            9854

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=97.18  E-value=0.00016  Score=48.17  Aligned_cols=66  Identities=12%  Similarity=0.316  Sum_probs=43.5

Q ss_pred             cCCCcccccchhhhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeE
Q psy15246        118 VPYDTFDILQDQEVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTEL  183 (213)
Q Consensus       118 ~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~  183 (213)
                      ++..+|+.....+...+|.||++|        |.+.++      +.+..+|++.+.++++.+. ..++||+ .+|-+|+.
T Consensus         4 l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~   81 (104)
T 2e0q_A            4 LDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYG-VMSLPTV-IFFKDGEP   81 (104)
T ss_dssp             CCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTT-CCSSCEE-EEEETTEE
T ss_pred             cCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCC-ccccCEE-EEEECCeE
Confidence            455666633344445788999999        333222      7889999999988877665 5556666 34458886


Q ss_pred             ee
Q psy15246        184 IG  185 (213)
Q Consensus       184 ~g  185 (213)
                      ++
T Consensus        82 ~~   83 (104)
T 2e0q_A           82 VD   83 (104)
T ss_dssp             EE
T ss_pred             hh
Confidence            53

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.17  E-value=0.00037  Score=44.84  Aligned_cols=59  Identities=19%  Similarity=0.198  Sum_probs=39.7

Q ss_pred             hhheeccCC-CCCCCC--------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe--Eeeh--HHHHHHH
Q psy15246        133 EGLKIYSNW-PTYPQV--------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE--LIGG--LDIIKEL  193 (213)
Q Consensus       133 ~~v~~~apW-P~~~~~--------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~--~~gg--~d~~~~~  193 (213)
                      .++.||++| |.+.+.              +.+..+|++.++++.+.    -+..++|+++++|+  +.|+  .+.+.++
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~Pt~~~~G~~~~~G~~~~~~l~~~   79 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIE----YGLMAVPAIAINGVVRFVGAPSREELFEA   79 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGG----TCSSCSSEEEETTTEEEECSSCCHHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHh----CCceeeCEEEECCEEEEccCCCHHHHHHH
Confidence            456788888 444333              68889999888765433    35567888888998  7876  4555554


Q ss_pred             HH
Q psy15246        194 QV  195 (213)
Q Consensus       194 ~~  195 (213)
                      .+
T Consensus        80 l~   81 (85)
T 1nho_A           80 IN   81 (85)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=97.16  E-value=8.7e-05  Score=54.42  Aligned_cols=64  Identities=9%  Similarity=0.255  Sum_probs=43.9

Q ss_pred             cCCCcccccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe
Q psy15246        118 VPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE  182 (213)
Q Consensus       118 ~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~  182 (213)
                      ++..+|+.+...+..++|.||++|        |.++++       +.|..+|++.++++.+.+. +.++||+ .+|.+|+
T Consensus        52 l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~-i~~~Pt~-~~~~~G~  129 (155)
T 2ppt_A           52 IDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHR-IQGIPAF-ILFHKGR  129 (155)
T ss_dssp             CCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTT-CCSSSEE-EEEETTE
T ss_pred             CCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcC-CCcCCEE-EEEeCCe
Confidence            334445422233445789999999        555443       7889999999988877766 6667777 5566897


Q ss_pred             E
Q psy15246        183 L  183 (213)
Q Consensus       183 ~  183 (213)
                      .
T Consensus       130 ~  130 (155)
T 2ppt_A          130 E  130 (155)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.15  E-value=0.0013  Score=51.15  Aligned_cols=88  Identities=18%  Similarity=0.233  Sum_probs=61.8

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------------CchhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------------DLPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~~l~~   67 (213)
                      .++.+|+.|| ++||+.|......|.++..++...++.++.|.+|                            .+.++++
T Consensus        55 ~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  134 (219)
T 3tue_A           55 KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIAR  134 (219)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHHHH
Confidence            5688999999 9999999999999999999988667888888765                            2346788


Q ss_pred             hCCCc----ccc--EEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246         68 NYKVS----AVP--TFVILK-NLKPVDRV-----EGADPESLDKKLQNQ  104 (213)
Q Consensus        68 ~~~I~----~~P--ti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~  104 (213)
                      .||+-    +++  .+.++. +|+.....     .|++.+++.+.|+.+
T Consensus       135 ~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aL  183 (219)
T 3tue_A          135 SYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAF  183 (219)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            88874    233  344444 56432211     245555666666654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.15  E-value=0.00019  Score=48.99  Aligned_cols=69  Identities=10%  Similarity=0.229  Sum_probs=45.4

Q ss_pred             ccccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246        115 ITHVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      +..++...|+ .+.+.....+|.||++|        |.++++       +.|..+|+..++++++.+. ..++||+ .+|
T Consensus         9 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~   86 (115)
T 1thx_A            9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYK-VEGVPAL-RLV   86 (115)
T ss_dssp             EEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTT-CCSSSEE-EEE
T ss_pred             eEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcC-CCceeEE-EEE
Confidence            3455667776 33334445788999999        322222       7789999999988877665 5566666 344


Q ss_pred             eCCeEee
Q psy15246        179 VNTELIG  185 (213)
Q Consensus       179 i~g~~~g  185 (213)
                      -+|+.++
T Consensus        87 ~~G~~~~   93 (115)
T 1thx_A           87 KGEQILD   93 (115)
T ss_dssp             ETTEEEE
T ss_pred             cCCEEEE
Confidence            6898543

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=97.13  E-value=0.00012  Score=52.78  Aligned_cols=68  Identities=16%  Similarity=0.428  Sum_probs=48.3

Q ss_pred             ccccCCCcccccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ...++...|+.+.......+|.||++|        |.+.++       +.|..+|++.++++.+.+. ..++||+ .+|-
T Consensus        40 v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~  117 (148)
T 3p2a_A           40 VINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFR-IRSIPTI-MLYR  117 (148)
T ss_dssp             CEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTT-CCSSSEE-EEEE
T ss_pred             ceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCC-CCccCEE-EEEE
Confidence            344566667644344555889999999        444443       7789999999998887766 6677887 5667


Q ss_pred             CCeEe
Q psy15246        180 NTELI  184 (213)
Q Consensus       180 ~g~~~  184 (213)
                      +|+.+
T Consensus       118 ~G~~~  122 (148)
T 3p2a_A          118 NGKMI  122 (148)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            88754

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.12  E-value=9.7e-05  Score=49.75  Aligned_cols=66  Identities=11%  Similarity=0.249  Sum_probs=43.3

Q ss_pred             ccCCCcccccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        117 HVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       117 ~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      .++..+|+.+...+...+|.||++|        |.+.++       +.+..+|++.++++++.+. ..++||+ .++-+|
T Consensus         4 ~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~G   81 (105)
T 1nsw_A            4 TLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFG-IMSIPTL-ILFKGG   81 (105)
T ss_dssp             EECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTT-CCSSSEE-EEEETT
T ss_pred             eccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcC-CccccEE-EEEeCC
Confidence            3455666643333445788999999        433332       6789999999988877665 5556666 344589


Q ss_pred             eEe
Q psy15246        182 ELI  184 (213)
Q Consensus       182 ~~~  184 (213)
                      +.+
T Consensus        82 ~~~   84 (105)
T 1nsw_A           82 RPV   84 (105)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            843

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=97.11  E-value=0.00017  Score=50.60  Aligned_cols=67  Identities=18%  Similarity=0.314  Sum_probs=44.7

Q ss_pred             ccccCCCccc-ccchhhhhhhheeccCC-C--------------CCCCC--------------CCceEEeccCCHHHHHH
Q psy15246        115 ITHVPYDTFD-ILQDQEVREGLKIYSNW-P--------------TYPQV--------------VPYDTFDILQDQEVREG  164 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~~~~~~~v~~~apW-P--------------~~~~~--------------v~~~~~d~~~~~~~~~~  164 (213)
                      +..++..+|+ .+.+.....+|.||++| |              .+.++              +.+..+|++.++++++.
T Consensus         5 v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~   84 (123)
T 1oaz_A            5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK   84 (123)
T ss_dssp             CEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGG
T ss_pred             cEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHH
Confidence            3456777786 34344455889999999 5              44333              67789999998777655


Q ss_pred             HHhhcCCCcccceEeCCeE
Q psy15246        165 LKIYSNWPTYPQVYVNTEL  183 (213)
Q Consensus       165 l~~~~~~pt~p~i~i~g~~  183 (213)
                      +. ..++||+ .+|-+|+.
T Consensus        85 ~~-v~~~Pt~-~~~~~G~~  101 (123)
T 1oaz_A           85 YG-IRGIPTL-LLFKNGEV  101 (123)
T ss_dssp             GT-CCBSSEE-EEEESSSE
T ss_pred             cC-CCccCEE-EEEECCEE
Confidence            54 5566766 44568874

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=97.09  E-value=0.00011  Score=49.86  Aligned_cols=67  Identities=18%  Similarity=0.367  Sum_probs=46.6

Q ss_pred             ccccCCCcccccchhhhhhhheeccCC--------CCCCCC----------CCceEEeccCCHHHHHHHHhhcCCCcccc
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQDQEVREGLKIYSNWPTYPQ  176 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~  176 (213)
                      +..++..+|+.... +...+|.||++|        |.+.++          +.+..+|+..++++++.+. ..++||+ .
T Consensus         7 v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~-v~~~Pt~-~   83 (111)
T 3uvt_A            7 VLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYS-VRGYPTL-L   83 (111)
T ss_dssp             SEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTT-CCSSSEE-E
T ss_pred             ceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcC-CCcccEE-E
Confidence            45677788874433 334789999999        333222          5678999999988887776 6677776 5


Q ss_pred             eEeCCeEe
Q psy15246        177 VYVNTELI  184 (213)
Q Consensus       177 i~i~g~~~  184 (213)
                      +|-+|+.+
T Consensus        84 ~~~~g~~~   91 (111)
T 3uvt_A           84 LFRGGKKV   91 (111)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCcEE
Confidence            66688654

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=97.07  E-value=1.2e-05  Score=59.24  Aligned_cols=53  Identities=8%  Similarity=0.027  Sum_probs=41.9

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      +...+|.|||+|        |.++++       +.|.++|+++.+++.+.+. +...||+ .+|.+|+.+
T Consensus        41 ~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~-V~siPT~-~fFk~G~~v  108 (160)
T 2av4_A           41 ERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYE-LYDPVSV-MFFYRNKHM  108 (160)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTT-CCSSEEE-EEEETTEEE
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcC-CCCCCEE-EEEECCEEE
Confidence            334788999999        555555       6799999999999877666 6677888 678999887

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.02  E-value=0.00018  Score=48.39  Aligned_cols=68  Identities=16%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             cccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        116 THVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       116 ~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ..++..+|+ .+.......+|.||++|        |.+.++       +.|..+|++.++++++.+. ..++||+ .+|.
T Consensus         5 ~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~   82 (107)
T 2i4a_A            5 LAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQ-VRSIPTL-MLVR   82 (107)
T ss_dssp             EECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTT-CCSSSEE-EEEE
T ss_pred             eecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcC-CCccCEE-EEEe
Confidence            345666676 33334445788999999        333332       6789999999888777665 5556666 3446


Q ss_pred             CCeEee
Q psy15246        180 NTELIG  185 (213)
Q Consensus       180 ~g~~~g  185 (213)
                      +|+.++
T Consensus        83 ~G~~~~   88 (107)
T 2i4a_A           83 DGKVID   88 (107)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            898653

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=97.02  E-value=8.4e-05  Score=51.08  Aligned_cols=61  Identities=13%  Similarity=0.175  Sum_probs=40.6

Q ss_pred             hhhhheeccCC--------CCCCCC-CCceEEecc------CCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHH
Q psy15246        131 VREGLKIYSNW--------PTYPQV-VPYDTFDIL------QDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQV  195 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~-v~~~~~d~~------~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~  195 (213)
                      ...+|.|||||        |.|.++ ..+..+||.      .++++++.+    +...+|+++++|+.+.|.-...+|.+
T Consensus        13 k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~~v~~~~~~~~~~~~~l~~~~----~V~~~PT~~i~G~~~~G~~~~~~l~~   88 (106)
T 3kp8_A           13 QIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEA----GITSYPTWIINGRTYTGVRSLEALAV   88 (106)
T ss_dssp             HHTCEEEECTTCHHHHHHHHHHGGGGGGSCEEESCTTCTTSCCCHHHHHT----TCCSSSEEEETTEEEESCCCHHHHHH
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHhCCEEEEecccccchhHHHHHHc----CCeEeCEEEECCEEecCCCCHHHHHH
Confidence            34678999999        777776 345678888      445565544    34556667779987777655555443

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=97.01  E-value=0.00019  Score=49.57  Aligned_cols=68  Identities=12%  Similarity=0.305  Sum_probs=47.0

Q ss_pred             ccccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246        115 ITHVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      +..++...|+ .+.+.....+|.||++|        |.+.++       +.|..+|+..++++++.+. ..++||+ .+|
T Consensus        14 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-i~~~Pt~-~~~   91 (121)
T 2i1u_A           14 TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQ-VVSIPTL-ILF   91 (121)
T ss_dssp             SEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTT-CCSSSEE-EEE
T ss_pred             ceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcC-CCcCCEE-EEE
Confidence            4556777776 33334445789999999        433332       7789999999988877765 5667776 455


Q ss_pred             eCCeEe
Q psy15246        179 VNTELI  184 (213)
Q Consensus       179 i~g~~~  184 (213)
                      -+|+.+
T Consensus        92 ~~g~~~   97 (121)
T 2i1u_A           92 KDGQPV   97 (121)
T ss_dssp             ETTEEE
T ss_pred             ECCEEE
Confidence            688764

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=97.01  E-value=0.00089  Score=46.08  Aligned_cols=62  Identities=11%  Similarity=0.093  Sum_probs=41.8

Q ss_pred             hhcCCCeEEEEEEc-----CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH----HhCCCccccEEEEEeCCC
Q psy15246         14 KYGKDKTAVVHFYA-----DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS----LNYKVSAVPTFVILKNLK   84 (213)
Q Consensus        14 ~~~~~~~~vV~F~a-----~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~----~~~~I~~~Pti~~~~~g~   84 (213)
                      .+++++ ++| |..     |||++|++.+..|++.       ++.+-.+|+++++++.    +..+..++|.+  |-+|+
T Consensus        14 ~i~~~~-Vvv-y~k~t~~~p~Cp~C~~ak~~L~~~-------gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i--fi~g~   82 (109)
T 3ipz_A           14 LVNSEK-VVL-FMKGTRDFPMCGFSNTVVQILKNL-------NVPFEDVNILENEMLRQGLKEYSNWPTFPQL--YIGGE   82 (109)
T ss_dssp             HHTSSS-EEE-EESBCSSSBSSHHHHHHHHHHHHT-------TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE--EETTE
T ss_pred             HHccCC-EEE-EEecCCCCCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHHHCCCCCCeE--EECCE
Confidence            344444 433 555     5999999999998884       3556677877665543    44588899976  45776


Q ss_pred             Cc
Q psy15246         85 PV   86 (213)
Q Consensus        85 ~~   86 (213)
                      .+
T Consensus        83 ~i   84 (109)
T 3ipz_A           83 FF   84 (109)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.00  E-value=0.00058  Score=47.79  Aligned_cols=59  Identities=12%  Similarity=0.233  Sum_probs=41.3

Q ss_pred             ccccCCCcccc-cchhhhhhhheeccCC-CCCCCC--------------CCceEEeccCCHHHHHHHHhhcCCCcc
Q psy15246        115 ITHVPYDTFDI-LQDQEVREGLKIYSNW-PTYPQV--------------VPYDTFDILQDQEVREGLKIYSNWPTY  174 (213)
Q Consensus       115 ~~~~~~~~f~~-l~~~~~~~~v~~~apW-P~~~~~--------------v~~~~~d~~~~~~~~~~l~~~~~~pt~  174 (213)
                      +..++..+|+. +.+.....+|.||++| |.+.++              +.|..+|++.+.++++.+. ..++||+
T Consensus        19 v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~-v~~~Pt~   93 (130)
T 2dml_A           19 VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYG-VQGFPTI   93 (130)
T ss_dssp             SEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHT-CCSSSEE
T ss_pred             cEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcC-CCccCEE
Confidence            45567777773 4344445889999999 344333              6788999999988887765 5566666

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=97.00  E-value=0.00034  Score=46.85  Aligned_cols=65  Identities=14%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             cCCCcccc-cchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        118 VPYDTFDI-LQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       118 ~~~~~f~~-l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      ++..+|+. +...+...+|.||++|        |.+.++       +.+..+|++.++++++.+. ..++||+ .++-+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~g   82 (105)
T 1fb6_A            5 VNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN-IRSIPTV-LFFKNG   82 (105)
T ss_dssp             CCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTT-CCSSSEE-EEEETT
T ss_pred             chhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCC-CCcccEE-EEEeCC
Confidence            45566653 3333445788999999        333332       6788999999888877665 5667776 455688


Q ss_pred             eEe
Q psy15246        182 ELI  184 (213)
Q Consensus       182 ~~~  184 (213)
                      +.+
T Consensus        83 ~~~   85 (105)
T 1fb6_A           83 ERK   85 (105)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            743

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.97  E-value=0.00012  Score=51.58  Aligned_cols=66  Identities=12%  Similarity=0.262  Sum_probs=44.3

Q ss_pred             ccCC-CcccccchhhhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        117 HVPY-DTFDILQDQEVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       117 ~~~~-~~f~~l~~~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      .++. ..|+.+.......+|.||++|        |.+.++      +.|..+|++.++++++.+. ..++||+ .+|.+|
T Consensus        23 ~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~-v~~~Pt~-~i~~~G  100 (125)
T 1r26_A           23 DVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCR-VLQLPTF-IIARSG  100 (125)
T ss_dssp             EECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTT-CCSSSEE-EEEETT
T ss_pred             ECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcC-CCcccEE-EEEeCC
Confidence            3444 555533233445788999999        444333      7889999999988887765 5667776 455689


Q ss_pred             eEe
Q psy15246        182 ELI  184 (213)
Q Consensus       182 ~~~  184 (213)
                      +.+
T Consensus       101 ~~~  103 (125)
T 1r26_A          101 KML  103 (125)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            854

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.97  E-value=0.00019  Score=50.17  Aligned_cols=81  Identities=14%  Similarity=0.259  Sum_probs=53.9

Q ss_pred             CCcccccCCCcccccchhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCccc
Q psy15246        112 PSNITHVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYP  175 (213)
Q Consensus       112 p~~~~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p  175 (213)
                      ++.+..++..+|+.+.+..  .+|.||++|        |.+.++        +.|..+|++.+.++++.+. ..++||+ 
T Consensus         6 ~~~v~~l~~~~f~~~~~~~--vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~Pt~-   81 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFI-INALPTI-   81 (126)
T ss_dssp             CCSEEECCTTTHHHHTSSE--EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTT-CCSSSEE-
T ss_pred             CCccEEecHHHHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcC-CcccCEE-
Confidence            3345567778887433222  789999999        444433        6789999999988887766 5677777 


Q ss_pred             ceEeCCeE---eeh--HHHHHHHHHc
Q psy15246        176 QVYVNTEL---IGG--LDIIKELQVA  196 (213)
Q Consensus       176 ~i~i~g~~---~gg--~d~~~~~~~~  196 (213)
                      .+|.+|+.   .|.  .+.+.++.++
T Consensus        82 ~~~~~G~~~~~~G~~~~~~l~~~l~~  107 (126)
T 1x5e_A           82 YHCKDGEFRRYQGPRTKKDFINFISD  107 (126)
T ss_dssp             EEEETTEEEECCSCCCHHHHHHHHHT
T ss_pred             EEEeCCeEEEeecCCCHHHHHHHHHH
Confidence            45568873   343  4566666554

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=96.96  E-value=0.00017  Score=48.84  Aligned_cols=54  Identities=20%  Similarity=0.204  Sum_probs=39.9

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ....+|.||++|        |.+.++      +.|..+|++.++++++.+. ..++||+ .+|.+|+.++
T Consensus        21 ~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~G~~~~   88 (107)
T 1gh2_A           21 SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNN-ISATPTF-QFFRNKVRID   88 (107)
T ss_dssp             TSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTT-CCSSSEE-EEEETTEEEE
T ss_pred             CCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcC-CCcccEE-EEEECCeEEE
Confidence            444788999999        444433      7789999999988877665 6677887 5667898554

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=96.96  E-value=0.00014  Score=50.49  Aligned_cols=79  Identities=14%  Similarity=0.257  Sum_probs=49.4

Q ss_pred             cccccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccce
Q psy15246        114 NITHVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQV  177 (213)
Q Consensus       114 ~~~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i  177 (213)
                      .+..++..+|+ .+.+.....+|.||++|        |.+.++       +.|..+|++.++++++.+. ..++||+ .+
T Consensus         4 ~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~   81 (122)
T 3aps_A            4 ASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAG-IKAYPSV-KL   81 (122)
T ss_dssp             CSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTT-CCSSSEE-EE
T ss_pred             chhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcC-CCccceE-EE
Confidence            34455666664 33333445889999999        444433       7889999999988877665 5566666 33


Q ss_pred             EeCC----eEee------hHHHHHHHH
Q psy15246        178 YVNT----ELIG------GLDIIKELQ  194 (213)
Q Consensus       178 ~i~g----~~~g------g~d~~~~~~  194 (213)
                      |-+|    .+.|      ..+.+.++.
T Consensus        82 ~~~~~~~~~~~g~~~~~~~~~~l~~~l  108 (122)
T 3aps_A           82 YQYERAKKSIWEEQINSRDAKTIAALI  108 (122)
T ss_dssp             EEEEGGGTEEEEEEECCSCHHHHHHHH
T ss_pred             EeCCCccceeeccccCcCCHHHHHHHH
Confidence            3233    3556      355565544

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=96.96  E-value=0.00023  Score=48.75  Aligned_cols=65  Identities=15%  Similarity=0.201  Sum_probs=42.1

Q ss_pred             ccCCCcccccchhhhhhhheeccCC-CCCCCC--------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        117 HVPYDTFDILQDQEVREGLKIYSNW-PTYPQV--------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       117 ~~~~~~f~~l~~~~~~~~v~~~apW-P~~~~~--------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      .++..+|+... .+...+|.||++| |.+.+.              +.+..+|++.+.++++.+. ..++||+ .+|-+|
T Consensus         5 ~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~G   81 (112)
T 2voc_A            5 KATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYG-VMSIPTL-LVLKDG   81 (112)
T ss_dssp             ECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTT-CCSBSEE-EEEETT
T ss_pred             EecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcC-CCcccEE-EEEeCC
Confidence            34556665322 3445788999999 333222              6789999999888877665 4555665 344589


Q ss_pred             eEe
Q psy15246        182 ELI  184 (213)
Q Consensus       182 ~~~  184 (213)
                      +.+
T Consensus        82 ~~~   84 (112)
T 2voc_A           82 EVV   84 (112)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            854

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=96.95  E-value=0.00016  Score=48.64  Aligned_cols=67  Identities=12%  Similarity=0.184  Sum_probs=45.8

Q ss_pred             cccCCCcccccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        116 THVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       116 ~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      ..++..+|+... .+...+|.||++|        |.+.++       +.+..+|++.++++++.+. ..++||+ .++-+
T Consensus         6 ~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~   82 (106)
T 3die_A            6 VKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYE-VMSIPTL-IVFKD   82 (106)
T ss_dssp             EECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTT-CCSBSEE-EEEET
T ss_pred             EECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCC-CcccCEE-EEEeC
Confidence            445667776333 3445789999999        333333       7789999999998887765 5667776 45568


Q ss_pred             CeEee
Q psy15246        181 TELIG  185 (213)
Q Consensus       181 g~~~g  185 (213)
                      |+.++
T Consensus        83 G~~~~   87 (106)
T 3die_A           83 GQPVD   87 (106)
T ss_dssp             TEEEE
T ss_pred             CeEEE
Confidence            87543

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=96.94  E-value=0.00025  Score=49.20  Aligned_cols=67  Identities=16%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             cccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        116 THVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       116 ~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ...+..+|+ .+.+.....+|.||++|        |.+.++       +.+..+|++.+.++++.+. ..++||+ .+|.
T Consensus        16 ~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~-v~~~Pt~-~~~~   93 (119)
T 1w4v_A           16 NIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYE-VSAVPTV-LAMK   93 (119)
T ss_dssp             ECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTT-CCSSSEE-EEEE
T ss_pred             EecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcC-CCcccEE-EEEe
Confidence            344555565 23333445788999999        333332       7789999999988877665 5566766 4556


Q ss_pred             CCeEe
Q psy15246        180 NTELI  184 (213)
Q Consensus       180 ~g~~~  184 (213)
                      +|+.+
T Consensus        94 ~G~~~   98 (119)
T 1w4v_A           94 NGDVV   98 (119)
T ss_dssp             TTEEE
T ss_pred             CCcEE
Confidence            89753

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=96.91  E-value=0.00011  Score=59.60  Aligned_cols=59  Identities=14%  Similarity=0.233  Sum_probs=42.4

Q ss_pred             hhheeccCC--------CCCCCCC-CceEEeccC------CHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHH
Q psy15246        133 EGLKIYSNW--------PTYPQVV-PYDTFDILQ------DQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQV  195 (213)
Q Consensus       133 ~~v~~~apW--------P~~~~~v-~~~~~d~~~------~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~  195 (213)
                      ..+.|||||        |.++++. .+.++||+.      ++++++.    .+..++|++++||+.++|..+..+|.+
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~----~gI~~vPT~~i~G~~~~G~~~~~~L~~  273 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTE----AGITSYPTWIINGRTYTGVRSLEALAV  273 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHT----TTCCSTTEEEETTEEEESCCCHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHH----cCCcccCeEEECCEEecCCCCHHHHHH
Confidence            568999999        7777763 456778873      3445443    355677789999999999877776654

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.0023  Score=44.92  Aligned_cols=53  Identities=13%  Similarity=0.083  Sum_probs=36.5

Q ss_pred             CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH----HHhCCCccccEEEEEeCCCCc
Q psy15246         28 DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL----SLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        28 ~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l----~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ||||+|++.+..|++..-.+.    .|..+|++.++++    .+..|...+|.+  |-+|+.+
T Consensus        29 p~Cp~C~~ak~lL~~~gv~~~----~~~~~dv~~~~~~~~~l~~~sg~~tvP~v--fI~g~~i   85 (121)
T 3gx8_A           29 PKCGFSRATIGLLGNQGVDPA----KFAAYNVLEDPELREGIKEFSEWPTIPQL--YVNKEFI   85 (121)
T ss_dssp             BCTTHHHHHHHHHHHHTBCGG----GEEEEECTTCHHHHHHHHHHHTCCSSCEE--EETTEEE
T ss_pred             CCCccHHHHHHHHHHcCCCcc----eEEEEEecCCHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence            599999999999988632211    1666777766554    344578889987  4577644

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.90  E-value=0.00019  Score=48.91  Aligned_cols=68  Identities=22%  Similarity=0.473  Sum_probs=44.1

Q ss_pred             ccccCCCccc-ccch-hhhhhhheeccCC--------CCCCCC------CCceEEecc-CCHHHHHHHHhhcCCCcccce
Q psy15246        115 ITHVPYDTFD-ILQD-QEVREGLKIYSNW--------PTYPQV------VPYDTFDIL-QDQEVREGLKIYSNWPTYPQV  177 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~-~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~-~~~~~~~~l~~~~~~pt~p~i  177 (213)
                      +..++..+|+ .+.+ .....+|.||++|        |.+.++      +.|..+|+. .+.++++.+. ..++||+ .+
T Consensus         7 v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~-v~~~Pt~-~~   84 (111)
T 2pu9_C            7 VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELG-IRVVPTF-KI   84 (111)
T ss_dssp             EEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHC-CSBSSEE-EE
T ss_pred             cEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcC-CCeeeEE-EE
Confidence            3455667776 3332 3445788999999        444333      778999998 5677776665 5566664 45


Q ss_pred             EeCCeEe
Q psy15246        178 YVNTELI  184 (213)
Q Consensus       178 ~i~g~~~  184 (213)
                      +-+|+.+
T Consensus        85 ~~~G~~~   91 (111)
T 2pu9_C           85 LKENSVV   91 (111)
T ss_dssp             ESSSSEE
T ss_pred             EeCCcEE
Confidence            5588753

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=96.88  E-value=0.00024  Score=48.40  Aligned_cols=67  Identities=18%  Similarity=0.362  Sum_probs=44.6

Q ss_pred             cccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        116 THVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       116 ~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ..++...|+ .+.+.+...+|.||++|        |.+.++       +.+..+|++.++++++.+. ..++||+ .+|-
T Consensus         8 ~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~   85 (112)
T 1t00_A            8 KHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYG-VMSIPTL-NVYQ   85 (112)
T ss_dssp             EEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTT-CCSSSEE-EEEE
T ss_pred             EecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCC-CCcccEE-EEEe
Confidence            345566665 33333445788999999        433332       6789999999988877765 5567776 4556


Q ss_pred             CCeEe
Q psy15246        180 NTELI  184 (213)
Q Consensus       180 ~g~~~  184 (213)
                      +|+.+
T Consensus        86 ~G~~~   90 (112)
T 1t00_A           86 GGEVA   90 (112)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            88753

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.87  E-value=0.001  Score=44.99  Aligned_cols=51  Identities=8%  Similarity=-0.016  Sum_probs=36.8

Q ss_pred             hhheeccCC--------CCCCCC---CCceEEecc--CCHHHHHHHHhhcCCCcccceEeCCeE--eehHH
Q psy15246        133 EGLKIYSNW--------PTYPQV---VPYDTFDIL--QDQEVREGLKIYSNWPTYPQVYVNTEL--IGGLD  188 (213)
Q Consensus       133 ~~v~~~apW--------P~~~~~---v~~~~~d~~--~~~~~~~~l~~~~~~pt~p~i~i~g~~--~gg~d  188 (213)
                      .++.|+++|        |.+.++   +.|..+|++  +++++.   .+ .+ .++|+++++|+.  +||.+
T Consensus        18 ~v~~f~~~~C~~C~~~~~~L~~l~~~i~~~~vdi~~~~~~el~---~~-~g-~~vP~l~~~g~~~~~~g~~   83 (100)
T 1wjk_A           18 VLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWY---ER-YK-FDIPVFHLNGQFLMMHRVN   83 (100)
T ss_dssp             EEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHH---HH-SS-SSCSEEEESSSEEEESSCC
T ss_pred             EEEEEeCCCCcchHHHHHHHHHhhhCCeEEEEECCCcchHHHH---HH-HC-CCCCEEEECCEEEEecCCC
Confidence            466788898        555543   789999998  444433   23 35 789999999998  88865

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.86  E-value=0.00015  Score=49.13  Aligned_cols=66  Identities=18%  Similarity=0.357  Sum_probs=44.4

Q ss_pred             cccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        116 THVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       116 ~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ..++..+|+ .+.+.....+|.||++|        |.+.++       +.+..+|++.++++++.+. ..++||+ .+|-
T Consensus         5 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~   82 (108)
T 2trx_A            5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTL-LLFK   82 (108)
T ss_dssp             EECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTT-CCSSSEE-EEEE
T ss_pred             eecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcC-CcccCEE-EEEe
Confidence            345667776 33334445889999999        433332       6788999999888877665 5566666 4445


Q ss_pred             CCeE
Q psy15246        180 NTEL  183 (213)
Q Consensus       180 ~g~~  183 (213)
                      +|+.
T Consensus        83 ~G~~   86 (108)
T 2trx_A           83 NGEV   86 (108)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            8875

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.83  E-value=0.00026  Score=49.78  Aligned_cols=69  Identities=20%  Similarity=0.387  Sum_probs=47.4

Q ss_pred             cccccCCCcccc-cchhhhhhhheeccCC--------CCCCCC-----------CCceEEeccCCHHHHHHHHhhcCCCc
Q psy15246        114 NITHVPYDTFDI-LQDQEVREGLKIYSNW--------PTYPQV-----------VPYDTFDILQDQEVREGLKIYSNWPT  173 (213)
Q Consensus       114 ~~~~~~~~~f~~-l~~~~~~~~v~~~apW--------P~~~~~-----------v~~~~~d~~~~~~~~~~l~~~~~~pt  173 (213)
                      .+..++..+|+. +.+.....+|.||++|        |.+.++           +.|+.+|++.+.++++.+. ..++||
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~-v~~~Pt   86 (133)
T 1x5d_A            8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYG-IRGFPT   86 (133)
T ss_dssp             SCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHT-CCSSSE
T ss_pred             cCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCC-CCeeCe
Confidence            355677788873 3344445889999999        333322           5688999999888887765 667777


Q ss_pred             ccceEeCCeEe
Q psy15246        174 YPQVYVNTELI  184 (213)
Q Consensus       174 ~p~i~i~g~~~  184 (213)
                      + .+|-+|+.+
T Consensus        87 ~-~~~~~g~~~   96 (133)
T 1x5d_A           87 I-KIFQKGESP   96 (133)
T ss_dssp             E-EEEETTEEE
T ss_pred             E-EEEeCCCce
Confidence            7 566678743

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=96.78  E-value=0.00026  Score=45.57  Aligned_cols=58  Identities=16%  Similarity=0.265  Sum_probs=37.6

Q ss_pred             hhheeccCC-CCCCCC--------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe--Eeeh--HHHHHHH
Q psy15246        133 EGLKIYSNW-PTYPQV--------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE--LIGG--LDIIKEL  193 (213)
Q Consensus       133 ~~v~~~apW-P~~~~~--------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~--~~gg--~d~~~~~  193 (213)
                      .++.||++| |.+.+.              +.+..+|+++++++.+.+    +...+|+++++|+  +.|.  .+.+.++
T Consensus         5 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~Pt~~~~G~~~~~G~~~~~~l~~~   80 (85)
T 1fo5_A            5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEY----GIMAVPTIVINGDVEFIGAPTKEALVEA   80 (85)
T ss_dssp             EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTST----TTCCSSEEEETTEEECCSSSSSHHHHHH
T ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHC----CCcccCEEEECCEEeeecCCCHHHHHHH
Confidence            456788888 444333              567889998876554333    4567788888998  5664  3555544


Q ss_pred             H
Q psy15246        194 Q  194 (213)
Q Consensus       194 ~  194 (213)
                      .
T Consensus        81 l   81 (85)
T 1fo5_A           81 I   81 (85)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.77  E-value=0.00018  Score=49.72  Aligned_cols=54  Identities=19%  Similarity=0.437  Sum_probs=38.8

Q ss_pred             hhhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        129 QEVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       129 ~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      .....+|.||++|        |.+.++      +.|..+|++.++++++.+. ..++||+ .+|.+|+.+
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~G~~~   96 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECE-VTAMPTF-VLGKDGQLI   96 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTT-CCSBSEE-EEEETTEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCC-CCcccEE-EEEeCCeEE
Confidence            3344788999999        333333      7889999999988877765 5667776 456689853

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.00023  Score=48.60  Aligned_cols=54  Identities=15%  Similarity=0.308  Sum_probs=38.1

Q ss_pred             hhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        130 EVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ....+|.||++|        |.+.++        +.|..+|++.++++++.+. ..++||+ .+|.+|+.++
T Consensus        21 ~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~G~~~~   90 (112)
T 3d6i_A           21 DKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFE-ISAVPYF-IIIHKGTILK   90 (112)
T ss_dssp             TCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTT-CCSSSEE-EEEETTEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcC-CCcccEE-EEEECCEEEE
Confidence            344788899999        333222        6789999999988877665 5667776 4566898654

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=96.74  E-value=0.00042  Score=48.16  Aligned_cols=68  Identities=22%  Similarity=0.473  Sum_probs=45.0

Q ss_pred             ccccCCCccc-ccch-hhhhhhheeccCC--------CCCCCC------CCceEEecc-CCHHHHHHHHhhcCCCcccce
Q psy15246        115 ITHVPYDTFD-ILQD-QEVREGLKIYSNW--------PTYPQV------VPYDTFDIL-QDQEVREGLKIYSNWPTYPQV  177 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~-~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~-~~~~~~~~l~~~~~~pt~p~i  177 (213)
                      +..++..+|+ .+.+ .+...+|.||++|        |.+.++      +.|..+|+. .+.++++.+. ..++||+ .+
T Consensus        20 v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~-v~~~Pt~-~~   97 (124)
T 1faa_A           20 VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELG-IRVVPTF-KI   97 (124)
T ss_dssp             EEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHC-CSSSSEE-EE
T ss_pred             eEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcC-CCeeeEE-EE
Confidence            4456667776 3332 3445788999999        444333      678899998 5677776655 5667775 45


Q ss_pred             EeCCeEe
Q psy15246        178 YVNTELI  184 (213)
Q Consensus       178 ~i~g~~~  184 (213)
                      +-+|+.+
T Consensus        98 ~~~G~~~  104 (124)
T 1faa_A           98 LKENSVV  104 (124)
T ss_dssp             EETTEEE
T ss_pred             EeCCcEE
Confidence            6689865

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.73  E-value=0.00028  Score=50.19  Aligned_cols=66  Identities=17%  Similarity=0.364  Sum_probs=44.6

Q ss_pred             ccccCCCcccccchhhhhhhheeccCC--------CCCCCC----------CCceEEeccCCHHHHHHHHhhcCCCcccc
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV----------VPYDTFDILQDQEVREGLKIYSNWPTYPQ  176 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~----------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~  176 (213)
                      +..++..+|+.+.......+|.||++|        |.+.++          +.|..+|+..+.++++.+. +.++||+ .
T Consensus        19 v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~-v~~~Pt~-~   96 (140)
T 2dj1_A           19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFD-VSGYPTI-K   96 (140)
T ss_dssp             EEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTT-CCSSSEE-E
T ss_pred             CEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCC-CCccCeE-E
Confidence            345566777644333445889999999        333322          5678899999888877665 5566776 4


Q ss_pred             eEeCCe
Q psy15246        177 VYVNTE  182 (213)
Q Consensus       177 i~i~g~  182 (213)
                      +|.+|+
T Consensus        97 ~~~~G~  102 (140)
T 2dj1_A           97 ILKKGQ  102 (140)
T ss_dssp             EEETTE
T ss_pred             EEECCc
Confidence            556887

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.72  E-value=0.00015  Score=51.28  Aligned_cols=68  Identities=19%  Similarity=0.362  Sum_probs=43.8

Q ss_pred             ccccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246        115 ITHVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      +..++..+|+ .+.+.....+|.||++|        |.+.++       +.|..+|++.++++++.+. ..++||+ .+|
T Consensus        24 v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~  101 (128)
T 2o8v_B           24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTL-LLF  101 (128)
T ss_dssp             SEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGT-CCSSSEE-EEE
T ss_pred             cEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcC-CCccCEE-EEE
Confidence            3455677776 33334445789999999        433332       6788999998877665544 4456666 344


Q ss_pred             eCCeEe
Q psy15246        179 VNTELI  184 (213)
Q Consensus       179 i~g~~~  184 (213)
                      .+|+.+
T Consensus       102 ~~G~~~  107 (128)
T 2o8v_B          102 KNGEVA  107 (128)
T ss_dssp             ETTEEE
T ss_pred             eCCEEE
Confidence            589853

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.70  E-value=0.0004  Score=46.55  Aligned_cols=53  Identities=19%  Similarity=0.372  Sum_probs=38.4

Q ss_pred             hhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        131 VREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ...+|.||++|        |.+.++      +.|..+|++.++++++.+. ..++||+ .+|.+|+.++
T Consensus        21 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~~   87 (105)
T 3m9j_A           21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESE-VKSMPTF-QFFKKGQKVG   87 (105)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTT-CCBSSEE-EEEETTEEEE
T ss_pred             CeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcC-CCcCcEE-EEEECCeEEE
Confidence            34778899999        333332      7889999999988887765 5667777 4556888654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=96.70  E-value=0.0003  Score=50.20  Aligned_cols=65  Identities=8%  Similarity=0.177  Sum_probs=38.0

Q ss_pred             cccCCCccccc-chhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        116 THVPYDTFDIL-QDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       116 ~~~~~~~f~~l-~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ..++..+|+.. .+... .+|.||++|        |.+.++       +.|..+|+..+.++++.+. ..++||+ .+|-
T Consensus        36 ~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~  112 (140)
T 1v98_A           36 VEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYG-VRSVPTL-VLFR  112 (140)
T ss_dssp             -------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTT-CCSSSEE-EEEE
T ss_pred             ccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCC-CCccCEE-EEEe
Confidence            34455666533 33334 888999999        444333       6789999999988877765 5567776 4556


Q ss_pred             CCeE
Q psy15246        180 NTEL  183 (213)
Q Consensus       180 ~g~~  183 (213)
                      +|+.
T Consensus       113 ~G~~  116 (140)
T 1v98_A          113 RGAP  116 (140)
T ss_dssp             TTEE
T ss_pred             CCcE
Confidence            8985

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=96.65  E-value=0.0014  Score=50.03  Aligned_cols=95  Identities=18%  Similarity=0.194  Sum_probs=51.2

Q ss_pred             chhHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHHHHhcc---C--CCCCCccc-ccCCCcccccc--hhhhhh
Q psy15246         62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAST---M--KNQPSNIT-HVPYDTFDILQ--DQEVRE  133 (213)
Q Consensus        62 ~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~~---~--kg~p~~~~-~~~~~~f~~l~--~~~~~~  133 (213)
                      +...++.+||+++|++++  +|+......+....++.+|+++++.-   +  +..|.... ...-.++..+.  .+....
T Consensus        39 ~~~~a~~~gi~gvP~fvi--ngk~~~~~~~~~~~~~~~f~~~~~~l~~~L~s~~~p~~~~~~~~g~~y~~l~~p~~~~~~  116 (197)
T 1un2_A           39 QEKAAADVQLRGVPAMFV--NGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKPVAGAPQ  116 (197)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEEECGGGSCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSCCTTCCS
T ss_pred             HHHHHHHcCCCcCCEEEE--cceEecCccccccccHHHHHHHHHHHHHHHHhCcccccccccCCCCCceEccCCCCCCCE
Confidence            456789999999999966  77644333344443444443333211   1  11222100 11123344343  223458


Q ss_pred             hheeccCC--------CCC---CCC-------CCceEEeccCC
Q psy15246        134 GLKIYSNW--------PTY---PQV-------VPYDTFDILQD  158 (213)
Q Consensus       134 ~v~~~apW--------P~~---~~~-------v~~~~~d~~~~  158 (213)
                      +|.||++|        |.+   +++       +.|..+++..+
T Consensus       117 vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          117 VLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             EEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             EEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            89999999        776   443       67888888754

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.64  E-value=0.0002  Score=48.34  Aligned_cols=64  Identities=17%  Similarity=0.297  Sum_probs=41.1

Q ss_pred             cCCCcccc-cchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        118 VPYDTFDI-LQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       118 ~~~~~f~~-l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      ++..+|+. +.+.+...+|.||++|        |.+.++       +.+..+|++.++++++.+. ..++||+ .++-+|
T Consensus         6 l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~G   83 (107)
T 1dby_A            6 VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYG-IRSIPTI-MVFKGG   83 (107)
T ss_dssp             ECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHT-CCSSCEE-EEESSS
T ss_pred             ccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCC-CCcCCEE-EEEeCC
Confidence            34445542 2233445788999999        433332       6788999999988877665 5566665 344578


Q ss_pred             eE
Q psy15246        182 EL  183 (213)
Q Consensus       182 ~~  183 (213)
                      +.
T Consensus        84 ~~   85 (107)
T 1dby_A           84 KK   85 (107)
T ss_dssp             SE
T ss_pred             EE
Confidence            64

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.62  E-value=0.00029  Score=51.30  Aligned_cols=53  Identities=19%  Similarity=0.355  Sum_probs=38.7

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ....+|.||++|        |.+.++      +.|..+|++.++++++.+. +.++||+ .+|-+|+.+
T Consensus        32 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~G~~~   98 (153)
T 2wz9_A           32 KSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYE-ISSVPTF-LFFKNSQKI   98 (153)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTT-CCSSSEE-EEEETTEEE
T ss_pred             CCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcC-CCCCCEE-EEEECCEEE
Confidence            344788999999        444443      7889999999988887665 5667776 455589864

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=95.63  E-value=0.00032  Score=46.85  Aligned_cols=66  Identities=12%  Similarity=0.306  Sum_probs=40.9

Q ss_pred             cCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        118 VPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       118 ~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      ++..+|+ .+...+...+|.||++|        |.+.++       +.+..+|++.+.++++.+. ..+.||+ .++-+|
T Consensus         6 l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~g   83 (106)
T 2yj7_A            6 VTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYG-IRSIPTL-LLFKNG   83 (106)
Confidence            3445554 22233445788999999        444443       6677888888877776665 4555665 344477


Q ss_pred             eEee
Q psy15246        182 ELIG  185 (213)
Q Consensus       182 ~~~g  185 (213)
                      +.++
T Consensus        84 ~~~~   87 (106)
T 2yj7_A           84 QVVD   87 (106)
Confidence            7553

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.57  E-value=0.0006  Score=46.27  Aligned_cols=53  Identities=19%  Similarity=0.320  Sum_probs=37.5

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ....+|.||++|        |.+.++       +.|..+|++.+.++++.+. ..++||+ .+|.+|+.+
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~G~~~   91 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAG-ITAMPTF-HVYKDGVKA   91 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHT-CCBSSEE-EEEETTEEE
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcC-CCcccEE-EEEECCeEE
Confidence            344788899999        333332       6789999999888887775 5666776 455689854

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=96.52  E-value=0.0045  Score=46.39  Aligned_cols=43  Identities=14%  Similarity=0.210  Sum_probs=35.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHH-HHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLF-DEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~-~~l~~~~~~~~v~~~~vd~~   60 (213)
                      ..++.+|.||..+||+|..+.+.+ .++.+.+++ .+.+..+...
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~-~v~~~~~~l~   59 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKD-IVAFTPFHLE   59 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTT-TCEEEEEECT
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCC-ceEEEEEecC
Confidence            356788999999999999999999 999998876 6777766644

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.51  E-value=0.0004  Score=48.11  Aligned_cols=53  Identities=11%  Similarity=0.300  Sum_probs=38.6

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ....+|.||++|        |.+.++      +.|..+|++.++++++.+. ..++||+ .+|.+|+.+
T Consensus        34 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~G~~~  100 (122)
T 2vlu_A           34 KKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFS-VEAMPTF-LFMKEGDVK  100 (122)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTT-CCSSSEE-EEEETTEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcC-CCcccEE-EEEeCCEEE
Confidence            344788999999        433332      7889999999988887666 5677776 466689854

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=96.48  E-value=0.00068  Score=49.25  Aligned_cols=53  Identities=13%  Similarity=0.058  Sum_probs=40.7

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ....+|.|||+|        |.+.++       +.+..+|+++++++++.+. ..++||+- +|.+|+.+
T Consensus        23 ~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~-v~~~Pt~~-~~~~G~~v   90 (149)
T 3gix_A           23 EKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFD-ISYIPSTV-FFFNGQHM   90 (149)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTT-CCSSSEEE-EEETTEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcC-CCccCeEE-EEECCeEE
Confidence            344788999999        443333       6788999999988887776 67888885 88888776

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.47  E-value=0.00062  Score=46.84  Aligned_cols=54  Identities=19%  Similarity=0.380  Sum_probs=37.8

Q ss_pred             hhhhhheeccCC--------CCCCCC-----CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-----VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-----v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ....+|.||++|        |.+.++     +.+..+|++.++++++.+. ..+.||+ .++.+|+.++
T Consensus        33 ~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~G~~~~   99 (117)
T 2xc2_A           33 NKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEETARKYN-ISAMPTF-IAIKNGEKVG   99 (117)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHTTSSSEEEEEETTTSHHHHHHTT-CCSSSEE-EEEETTEEEE
T ss_pred             CCEEEEEEECCCCHhHHHHhHHHHHHHHHcCcEEEEEECCccHHHHHHcC-CCccceE-EEEeCCcEEE
Confidence            344788999999        444333     6788999999888877665 5666775 4556898643

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=96.47  E-value=0.00068  Score=47.57  Aligned_cols=55  Identities=11%  Similarity=0.277  Sum_probs=40.3

Q ss_pred             hhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        129 QEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       129 ~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      .+...+|.||++|        |.++++       +.+..+|++.++++++.+. ..++||+ .++-+|+.++
T Consensus        41 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~-v~~~Pt~-~~~~~G~~~~  110 (128)
T 3ul3_B           41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFS-VKSLPTI-ILLKNKTMLA  110 (128)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTT-CCSSSEE-EEEETTEEEE
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcC-CCCcCEE-EEEECCEEEE
Confidence            3445889999999        444433       6789999999998887776 6667777 4556888664

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=96.47  E-value=0.0018  Score=45.85  Aligned_cols=49  Identities=18%  Similarity=0.342  Sum_probs=35.3

Q ss_pred             hhhheeccCC--------CCCCCC-----CCceEEeccCCHHHHHHHHhhcCCCcccceEe--CCe
Q psy15246        132 REGLKIYSNW--------PTYPQV-----VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV--NTE  182 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~-----v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i--~g~  182 (213)
                      ..+|.||++|        |.+.++     +.|..+|++.+.++++.+. ..++||+ .+|.  +|+
T Consensus        42 ~vvv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~~~g~  105 (133)
T 3cxg_A           42 SIVIKFGAVWCKPCNKIKEYFKNQLNYYYVTLVDIDVDIHPKLNDQHN-IKALPTF-EFYFNLNNE  105 (133)
T ss_dssp             EEEEEEECTTCHHHHHTHHHHHGGGGTEECEEEEEETTTCHHHHHHTT-CCSSSEE-EEEEEETTE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHhcCEEEEEEeccchHHHHHhcC-CCCCCEE-EEEEecCCC
Confidence            4788999999        544444     6788899999888877665 5566666 3333  887

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=96.46  E-value=0.00033  Score=53.76  Aligned_cols=67  Identities=13%  Similarity=0.163  Sum_probs=47.4

Q ss_pred             ccccCCCcccccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      +..++..+|+........++|.||++|        |.+.++       +.|+.+|++.++++++.+. ..++||+ .+|-
T Consensus        99 v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~  176 (210)
T 3apq_A           99 IITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKG-VNSYPSL-FIFR  176 (210)
T ss_dssp             SEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTT-CCSSSEE-EEEC
T ss_pred             eEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcC-CCcCCeE-EEEE
Confidence            445566667644444556889999999        555443       7789999999998887766 6677777 4556


Q ss_pred             CCeE
Q psy15246        180 NTEL  183 (213)
Q Consensus       180 ~g~~  183 (213)
                      +|+.
T Consensus       177 ~G~~  180 (210)
T 3apq_A          177 SGMA  180 (210)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            7863

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=96.42  E-value=0.00034  Score=54.26  Aligned_cols=79  Identities=20%  Similarity=0.369  Sum_probs=52.1

Q ss_pred             ccccCCCcccc-cchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246        115 ITHVPYDTFDI-LQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       115 ~~~~~~~~f~~-l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      ...++..+|+. +.+.....+|.||++|        |.+.++       +.|..+|++.++++++.+. ..++||+ .++
T Consensus        14 ~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~-v~~~Pt~-~~~   91 (222)
T 3dxb_A           14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTL-LLF   91 (222)
T ss_dssp             CEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGT-CCSBSEE-EEE
T ss_pred             ceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcC-CCcCCEE-EEE
Confidence            45677888873 3444455899999999        444443       6788999999887766554 5567776 455


Q ss_pred             eCCeEe----eh--HHHHHHHHH
Q psy15246        179 VNTELI----GG--LDIIKELQV  195 (213)
Q Consensus       179 i~g~~~----gg--~d~~~~~~~  195 (213)
                      -+|+.+    |.  .+.+.++.+
T Consensus        92 ~~G~~~~~~~G~~~~~~l~~~l~  114 (222)
T 3dxb_A           92 KNGEVAATKVGALSKGQLKEFLD  114 (222)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHH
T ss_pred             ECCeEEEEeccccChHHHHHHHH
Confidence            688643    43  345555433

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=96.41  E-value=0.026  Score=42.90  Aligned_cols=42  Identities=14%  Similarity=0.040  Sum_probs=31.4

Q ss_pred             HHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         65 LSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        65 l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      .++++||.++||+++..+|+.+....|..+. .+.+.|++.+.
T Consensus       161 ~a~~~gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~~  203 (208)
T 3kzq_A          161 LAKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERII  203 (208)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHh
Confidence            3567899999999998888765555665554 68888877764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=96.38  E-value=0.00064  Score=48.34  Aligned_cols=63  Identities=14%  Similarity=0.320  Sum_probs=40.1

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE-eCCe---Eeeh--HH
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY-VNTE---LIGG--LD  188 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~-i~g~---~~gg--~d  188 (213)
                      ....+|.||++|        |.+.++       +.+..+|++.++++++.+. +.++||+ .+| -+|+   +.|+  .+
T Consensus        51 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~~g~~~~~~G~~~~~  128 (141)
T 3hxs_A           51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFG-IQSIPTI-WFVPMKGEPQVNMGALSKE  128 (141)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTT-CCSSSEE-EEECSSSCCEEEESCCCHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcC-CCCcCEE-EEEeCCCCEEEEeCCCCHH
Confidence            345788999999        333222       6788999999988887765 5566666 222 2454   5554  34


Q ss_pred             HHHHHH
Q psy15246        189 IIKELQ  194 (213)
Q Consensus       189 ~~~~~~  194 (213)
                      .+.++.
T Consensus       129 ~l~~~l  134 (141)
T 3hxs_A          129 QLKGYI  134 (141)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            454443

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=96.35  E-value=0.00028  Score=50.88  Aligned_cols=54  Identities=9%  Similarity=0.076  Sum_probs=38.5

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ....+|.||++|        |.+.++       +.|..+|++.++++++.+. ..+.||+ .+|.+|+.+.
T Consensus        23 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~-i~~~Pt~-~~~~~G~~v~   91 (142)
T 1qgv_A           23 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYE-LYDPCTV-MFFFRNKHIM   91 (142)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSC-SCSSCEE-EEEETTEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcC-CCCCCEE-EEEECCcEEE
Confidence            344788999999        555444       6788999998877765544 5567777 4678898663

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=96.35  E-value=0.00032  Score=49.90  Aligned_cols=52  Identities=21%  Similarity=0.208  Sum_probs=36.0

Q ss_pred             hhhheeccCC--------CCCCCC-----CCceEEec---------cCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        132 REGLKIYSNW--------PTYPQV-----VPYDTFDI---------LQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~-----v~~~~~d~---------~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ..+|.||++|        |.+.++     +.|..+|+         +.+.++++.+. ..++||+ .+|-+|+.++
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~-v~~~Pt~-~~~~~G~~v~  106 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAG-VEGTPTL-VFYKEGRIVD  106 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHT-CCSSSEE-EEEETTEEEE
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcC-CceeCeE-EEEcCCEEEE
Confidence            4788999999        444333     77899999         55555555554 5678887 5677887543

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.31  E-value=0.00065  Score=47.55  Aligned_cols=53  Identities=13%  Similarity=0.292  Sum_probs=37.7

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ....+|.||++|        |.+.++      +.|..+|++.+.++++.+. ..++||+ .+|.+|+.+
T Consensus        38 ~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~-v~~~Pt~-~~~~~G~~~  104 (124)
T 1xfl_A           38 KTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWA-IQAMPTF-MFLKEGKIL  104 (124)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTT-CCSSSEE-EEEETTEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcC-CCccCEE-EEEECCEEE
Confidence            334788899999        444333      6788999999888877665 5667776 455689854

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=96.29  E-value=0.00037  Score=48.85  Aligned_cols=49  Identities=12%  Similarity=0.062  Sum_probs=34.4

Q ss_pred             hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ..+|.||+||        |.++++      ++|.++|+++.   .+.+ +..+.||+ .+|.+|+.++
T Consensus        25 ~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~-~v~~~PT~-~~fk~G~~v~   87 (118)
T 3evi_A           25 WVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHY-HDNCLPTI-FVYKNGQIEA   87 (118)
T ss_dssp             EEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTC-CGGGCSEE-EEEETTEEEE
T ss_pred             eEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHC-CCCCCCEE-EEEECCEEEE
Confidence            4788999999        444444      78999999874   1222 35577888 7889997443

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=96.26  E-value=0.0012  Score=47.78  Aligned_cols=77  Identities=14%  Similarity=0.135  Sum_probs=42.5

Q ss_pred             cccCCCcccccchhhhhhhheeccCCCC----------CCCC------CC--ceEEeccCCHHHHHHHHhhcCCCcccce
Q psy15246        116 THVPYDTFDILQDQEVREGLKIYSNWPT----------YPQV------VP--YDTFDILQDQEVREGLKIYSNWPTYPQV  177 (213)
Q Consensus       116 ~~~~~~~f~~l~~~~~~~~v~~~apWP~----------~~~~------v~--~~~~d~~~~~~~~~~l~~~~~~pt~p~i  177 (213)
                      ..++..+|+.+.......+|.|+++|+.          ++++      +.  |+.+|++.++++++.+. +.++||+ .+
T Consensus        20 ~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~-V~~iPT~-~~   97 (142)
T 2es7_A           20 QPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFN-VRRFPAT-LV   97 (142)
T ss_dssp             EECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTT-CCSSSEE-EE
T ss_pred             cccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcC-CCcCCeE-EE
Confidence            4556677874433332356777777632          2221      66  88999998888876654 6677887 56


Q ss_pred             EeCCe----Eeeh--HHHHHHHH
Q psy15246        178 YVNTE----LIGG--LDIIKELQ  194 (213)
Q Consensus       178 ~i~g~----~~gg--~d~~~~~~  194 (213)
                      |.+|+    ++|.  .+.+.++.
T Consensus        98 fk~G~~v~~~~G~~~~~~l~~~i  120 (142)
T 2es7_A           98 FTDGKLRGALSGIHPWAELLTLM  120 (142)
T ss_dssp             ESCC----CEESCCCHHHHHHHH
T ss_pred             EeCCEEEEEEeCCCCHHHHHHHH
Confidence            67887    4454  34454443

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.23  E-value=0.00015  Score=51.20  Aligned_cols=79  Identities=20%  Similarity=0.391  Sum_probs=46.4

Q ss_pred             ccccCCCccccc-chhhhhhhheeccCC--------CCCCCC---------CCceEEeccCCHHHHHHHHhhcCCCcccc
Q psy15246        115 ITHVPYDTFDIL-QDQEVREGLKIYSNW--------PTYPQV---------VPYDTFDILQDQEVREGLKIYSNWPTYPQ  176 (213)
Q Consensus       115 ~~~~~~~~f~~l-~~~~~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~  176 (213)
                      +..++..+|+.. .+.....+|.||++|        |.+.++         +.|..+|+..++.+++.+. ..++||+ .
T Consensus         9 v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~   86 (133)
T 2dj3_A            9 VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYK-VEGFPTI-Y   86 (133)
T ss_dssp             SEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCC-CSSSSEE-E
T ss_pred             eEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcC-CCcCCEE-E
Confidence            456677788743 333555889999999        444333         5678888887765544332 4455665 3


Q ss_pred             eEeCCe------Eeeh---HHHHHHHHH
Q psy15246        177 VYVNTE------LIGG---LDIIKELQV  195 (213)
Q Consensus       177 i~i~g~------~~gg---~d~~~~~~~  195 (213)
                      +|-+|.      +.||   .+.+.++.+
T Consensus        87 ~~~~g~~~~~~~~~gg~~~~~~l~~~l~  114 (133)
T 2dj3_A           87 FAPSGDKKNPIKFEGGNRDLEHLSKFID  114 (133)
T ss_dssp             EECTTCTTSCEECCSSCCSTTHHHHHHH
T ss_pred             EEeCCCcccceEecCCCcCHHHHHHHHH
Confidence            343442      4555   345555443

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.22  E-value=0.0007  Score=47.05  Aligned_cols=53  Identities=15%  Similarity=0.459  Sum_probs=37.7

Q ss_pred             hhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ....+|.||++|        |.+.++        +.|..+|++.++++++.+. ..++||+ .+|-+|+.+
T Consensus        33 ~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~-v~~~Pt~-~~~~~G~~~  101 (121)
T 2j23_A           33 DKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVG-IRAMPTF-VFFKNGQKI  101 (121)
T ss_dssp             SSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHT-CCSSSEE-EEEETTEEE
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcC-CCcccEE-EEEECCeEE
Confidence            344788999999        322222        6788999999988887766 6677777 566688754

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=96.19  E-value=0.011  Score=44.45  Aligned_cols=56  Identities=13%  Similarity=0.141  Sum_probs=41.8

Q ss_pred             CCCeEEEEEE-cCCCHHHH-hHHHHHHHHHHHc-CCCcE-EEEEEeCCC---chhHHHhCCCc
Q psy15246         17 KDKTAVVHFY-ADWSDECK-HMNTLFDEMSKQS-KYSQV-VFARCIAED---LPKLSLNYKVS   72 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~-~~~~~~~~l~~~~-~~~~v-~~~~vd~~~---~~~l~~~~~I~   72 (213)
                      .++.+++.|| +.|||.|. ...+.|.+...++ +..++ .++.|..+.   +...++++++.
T Consensus        42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~  104 (182)
T 1xiy_A           42 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK  104 (182)
T ss_dssp             TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCC
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC
Confidence            4667777666 68999999 8889999988888 54356 377777765   45677777765

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=96.19  E-value=0.00076  Score=45.15  Aligned_cols=54  Identities=17%  Similarity=0.275  Sum_probs=37.6

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      +...+|.||++|        |.+.++       +.+..+|++.++++++.+. ..+.||+ .++-+|+.++
T Consensus        20 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~G~~~~   88 (106)
T 1xwb_A           20 GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYN-ISSMPTF-VFLKNGVKVE   88 (106)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTT-CCSSSEE-EEEETTEEEE
T ss_pred             CCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcC-CCcccEE-EEEcCCcEEE
Confidence            344778899999        333322       6788999999888877765 5667776 4556897543

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.013  Score=47.38  Aligned_cols=98  Identities=15%  Similarity=0.123  Sum_probs=63.0

Q ss_pred             eEEeCC-chhhhhhcC-CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH--HhCC-----C--
Q psy15246          3 VVQISE-ELDVEKYGK-DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS--LNYK-----V--   71 (213)
Q Consensus         3 v~~l~~-~~~~~~~~~-~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~--~~~~-----I--   71 (213)
                      +..+++ +.....+.. +.+.++.|.. .    ....+.|..+|..+.+ .+.|+.++..+...+.  ++|+     |  
T Consensus       145 v~~i~~~~~l~~~l~~~~~~~vi~fs~-~----~~~~~~f~~~A~~~~~-~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~  218 (298)
T 3ed3_A          145 VKKFVRIDTLGSLLRKSPKLSVVLFSK-Q----DKISPVYKSIALDWLG-KFDFYSISNKKLKQLTDMNPTYEKTPEIFK  218 (298)
T ss_dssp             EEECSCGGGHHHHHTSCSSEEEEEEES-S----SSCCHHHHHHHHHTBT-TEEEEEEEGGGCCCCCTTCTTSTTCHHHHH
T ss_pred             cEEcCCHHHHHHHHhcCCceEEEEEcC-C----CcchHHHHHHHHHhhc-CcEEEEEcchHhhhhhhhhhhcccCcchhh
Confidence            566766 333444544 5677776633 2    2345789999999987 8999999865433333  3333     3  


Q ss_pred             -----------ccccEEEEEeC--CCCcccccC-CCchhHHHHHHHHhc
Q psy15246         72 -----------SAVPTFVILKN--LKPVDRVEG-ADPESLDKKLQNQAS  106 (213)
Q Consensus        72 -----------~~~Pti~~~~~--g~~~~~~~g-~~~~~l~~~i~~~~~  106 (213)
                                 ...|++++|+.  ++.+.+.++ .+..+|.+||.+..+
T Consensus       219 ~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~  267 (298)
T 3ed3_A          219 YLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLRDTFS  267 (298)
T ss_dssp             HHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHHHHHT
T ss_pred             hhhcccccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHHhhcC
Confidence                       67999999985  344443323 344589999997653

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.08  E-value=0.0012  Score=43.92  Aligned_cols=53  Identities=15%  Similarity=0.345  Sum_probs=37.4

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      +...+|.||++|        |.+.++      +.|..+|++.++++++.+. ..+.||+ .++.+|+.+
T Consensus        19 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~   85 (104)
T 2vim_A           19 GRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYS-VTAMPTF-VFIKDGKEV   85 (104)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTT-CCSSSEE-EEEETTEEE
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcC-CccccEE-EEEeCCcEE
Confidence            344778899999        333222      7789999999988877665 5667776 456688754

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=96.05  E-value=0.0028  Score=44.11  Aligned_cols=53  Identities=13%  Similarity=0.154  Sum_probs=37.7

Q ss_pred             hhhhhheeccCC-CCCCCC-------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW-PTYPQV-------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW-P~~~~~-------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ....+|.||++| |.+.+.             +.|..+|++.++++++.+. ..++||+ .++.+|+.+
T Consensus        36 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~  102 (130)
T 1wmj_A           36 GKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYN-VEAMPTF-LFIKDGAEA  102 (130)
T ss_dssp             TCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHT-CCSSCCC-CBCTTTTCC
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcC-CCccceE-EEEeCCeEE
Confidence            334778899999 444444             7889999998888877765 5667776 455678753

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=95.97  E-value=0.00093  Score=46.00  Aligned_cols=47  Identities=4%  Similarity=-0.015  Sum_probs=34.7

Q ss_pred             hhheeccCC--------CCCCCC-----CCceEEeccCCHHHHHHHHhhcCCCcccce--EeCCeEe
Q psy15246        133 EGLKIYSNW--------PTYPQV-----VPYDTFDILQDQEVREGLKIYSNWPTYPQV--YVNTELI  184 (213)
Q Consensus       133 ~~v~~~apW--------P~~~~~-----v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i--~i~g~~~  184 (213)
                      .++.|++||        |.+.++     +.|..+|+++++++.+.+.    . ++|+|  |++|+.+
T Consensus        31 ~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l~~~yg----v-~VP~l~~~~dG~~v   92 (107)
T 2fgx_A           31 KLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDGNEHLTRLYN----D-RVPVLFAVNEDKEL   92 (107)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHHHHHST----T-SCSEEEETTTTEEE
T ss_pred             EEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhC----C-CCceEEEEECCEEE
Confidence            456778888        333331     8999999999988766543    3 38888  9999987

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=95.92  E-value=0.00074  Score=46.79  Aligned_cols=49  Identities=12%  Similarity=0.273  Sum_probs=34.9

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      ....+|.||++|        |.+.++      +.|..+|++.+.++++.+. ..++||+ .+|-+
T Consensus        23 ~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~-i~~~Pt~-~~~~~   85 (118)
T 2f51_A           23 PGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYG-VSSIPAL-FFVKK   85 (118)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTT-CCSSSEE-EEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcC-CCCCCEE-EEEeC
Confidence            344788999999        444332      7889999999988877665 5667776 44555

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=95.86  E-value=0.0013  Score=45.84  Aligned_cols=53  Identities=6%  Similarity=-0.096  Sum_probs=32.6

Q ss_pred             hhhhhhheeccCC--------CCCCCC-------CCceEEe--ccCCHHHHHHHHhhcCCCcccceEe-CCeE
Q psy15246        129 QEVREGLKIYSNW--------PTYPQV-------VPYDTFD--ILQDQEVREGLKIYSNWPTYPQVYV-NTEL  183 (213)
Q Consensus       129 ~~~~~~v~~~apW--------P~~~~~-------v~~~~~d--~~~~~~~~~~l~~~~~~pt~p~i~i-~g~~  183 (213)
                      .....+|.||++|        |.+.++       +.+..+|  ++.+.++.+.+. ..++||+ .++- +|+.
T Consensus        25 ~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~-v~~~Pt~-~~~~~~G~~   95 (126)
T 2l57_A           25 EGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYD-ANIVPTT-VFLDKEGNK   95 (126)
T ss_dssp             SSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTT-CCSSSEE-EEECTTCCE
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcC-CcceeEE-EEECCCCCE
Confidence            3445788999999        433332       6778888  766666666554 4444544 2222 7874

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=95.83  E-value=0.019  Score=40.00  Aligned_cols=43  Identities=7%  Similarity=-0.007  Sum_probs=29.6

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-------hHHHhCCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-------KLSLNYKV   71 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-------~l~~~~~I   71 (213)
                      +..|+.++|+.|++....+++.       ++.+-.+|..+++       ++.+++|+
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~-------gi~y~~~di~~~~~~~~~l~~~~~~~g~   56 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH-------GIDYTFHDYKKEGLDAETLDRFLKTVPW   56 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCEEEEEHHHHCCCHHHHHHHHHHSCG
T ss_pred             EEEEECCCChHHHHHHHHHHHc-------CCcEEEEeeeCCCCCHHHHHHHHHHcCh
Confidence            5568899999999999888874       3455556665432       34566663

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=95.76  E-value=0.042  Score=42.70  Aligned_cols=64  Identities=13%  Similarity=0.125  Sum_probs=43.2

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEEEe-CCCCcc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVILK-NLKPVD   87 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~-~g~~~~   87 (213)
                      ...+.+.+.|....|..++.       ++..+.. ..+.+..++ +.+.+++++|+|+++||+++|. +|+...
T Consensus       155 ~~~~~~al~f~~~~~~~~~~-------~~~d~~~~~~i~v~~~~-~~~~~l~~~f~v~~~Pslvl~~~~g~~~~  220 (244)
T 3q6o_A          155 NNEEYLALIFEXGGSYLARE-------VALDLSQHKGVAVRRVL-NTEANVVRKFGVTDFPSCYLLFRNGSVSR  220 (244)
T ss_dssp             CCCSEEEEEEECTTCCHHHH-------HHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEEETTSCEEE
T ss_pred             CCCceEEEEEEECCcchHHH-------HHHHhccCCceEEEEEe-CchHHHHHHcCCCCCCeEEEEeCCCCeEe
Confidence            55677788888877543333       3333331 267777666 4467999999999999998887 555433

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=95.73  E-value=0.0015  Score=49.12  Aligned_cols=69  Identities=25%  Similarity=0.274  Sum_probs=50.5

Q ss_pred             CCcccccCCCcccccc-h-hhhhhhheecc----C---C--------CCCCCC------------CCceEEeccCCHHHH
Q psy15246        112 PSNITHVPYDTFDILQ-D-QEVREGLKIYS----N---W--------PTYPQV------------VPYDTFDILQDQEVR  162 (213)
Q Consensus       112 p~~~~~~~~~~f~~l~-~-~~~~~~v~~~a----p---W--------P~~~~~------------v~~~~~d~~~~~~~~  162 (213)
                      ++.+..++.++|+.+. . .....+|.|+|    |   |        |.|+++            +.|+++|+++++++.
T Consensus        17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            3446778999998443 2 23346788999    4   7        666554            468999999999998


Q ss_pred             HHHHhhcCCCcccceEeCCe
Q psy15246        163 EGLKIYSNWPTYPQVYVNTE  182 (213)
Q Consensus       163 ~~l~~~~~~pt~p~i~i~g~  182 (213)
                      +.++ +.+.||+ .+|-+|.
T Consensus        97 ~~~~-I~siPtl-~~F~~g~  114 (178)
T 3ga4_A           97 KDLK-LQNVPHL-VVYPPAE  114 (178)
T ss_dssp             HHTT-CCSSCEE-EEECCCC
T ss_pred             HHcC-CCCCCEE-EEEcCCC
Confidence            8887 7777887 6777774

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=95.72  E-value=0.0028  Score=42.88  Aligned_cols=51  Identities=18%  Similarity=0.378  Sum_probs=36.9

Q ss_pred             hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ..+|.||++|        |.+.++      +.|..+|++.++++.+.+. ..++||+ .++-+|+.+
T Consensus        28 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~G~~~   92 (113)
T 1ti3_A           28 LIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWN-VEAMPTF-IFLKDGKLV   92 (113)
T ss_dssp             EEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHH-CSSTTEE-EEEETTEEE
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCC-CCcccEE-EEEeCCEEE
Confidence            3677889998        333332      6788999999988887776 6677777 556689854

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=95.70  E-value=0.24  Score=33.43  Aligned_cols=83  Identities=14%  Similarity=0.241  Sum_probs=65.7

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcC-CCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHH
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLD   98 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~-~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~   98 (213)
                      .-..|.|..-+.+++....+.++.+.+- +..+.+-.||..+++++++.++|-.+||++=... .+..+..|.+-. .|.
T Consensus        13 L~lLyvag~tp~S~~ai~nL~~i~e~~l~~~~y~LeVIDv~eqPeLAE~~~IvATPTLIK~~P-~P~rriiGd~i~~ql~   91 (105)
T 1t4y_A           13 LLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGP-GSRQVLSGIDLTDQLA   91 (105)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEES-SSCEEEESSCHHHHHH
T ss_pred             hheeeEeCCCccHHHHHHHHHHHHHHhccCCceEEEEeecccCHHHHhHcCeeeccHhhccCC-CCceEEeChHHHHHHH
Confidence            4446778888999998888988776654 4379999999999999999999999999875544 556677787765 677


Q ss_pred             HHHHHH
Q psy15246         99 KKLQNQ  104 (213)
Q Consensus        99 ~~i~~~  104 (213)
                      .|.-+.
T Consensus        92 ~wwprW   97 (105)
T 1t4y_A           92 NQLPQW   97 (105)
T ss_dssp             HHHHHH
T ss_pred             HHhHHH
Confidence            776554

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=95.68  E-value=0.0019  Score=45.76  Aligned_cols=53  Identities=11%  Similarity=0.221  Sum_probs=38.0

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      +...+|.||++|        |.+.++      +.|..+|++.+.++++.+. ..+.||+ .++.+|+.+
T Consensus        46 ~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~G~~~  112 (139)
T 3d22_A           46 GKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWE-IKATPTF-FFLRDGQQV  112 (139)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTT-CCEESEE-EEEETTEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcC-CCcccEE-EEEcCCeEE
Confidence            334788999999        444333      7789999999988877665 5566776 456788754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=95.63  E-value=0.0074  Score=53.51  Aligned_cols=65  Identities=18%  Similarity=0.222  Sum_probs=42.0

Q ss_pred             hhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc---hh----HHHhCCCccccEEEEEeCC
Q psy15246         11 DVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL---PK----LSLNYKVSAVPTFVILKNL   83 (213)
Q Consensus        11 ~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~---~~----l~~~~~I~~~Pti~~~~~g   83 (213)
                      ..+.++..+  ++.|+.+|||+|++.+..+++..       +.+-.+|++..   .+    +.+..+...+|.+  |-+|
T Consensus        11 v~~~i~~~~--v~vy~~~~Cp~C~~~k~~L~~~~-------i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v--~i~g   79 (598)
T 2x8g_A           11 LRKTVDSAA--VILFSKTTCPYCKKVKDVLAEAK-------IKHATIELDQLSNGSAIQKCLASFSKIETVPQM--FVRG   79 (598)
T ss_dssp             HHHHHHHCS--EEEEECTTCHHHHHHHHHHHHTT-------CCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEE--EETT
T ss_pred             HHHHhccCC--EEEEECCCChhHHHHHHHHHHCC-------CCcEEEEcccCcchHHHHHHHHHHhCCceeCEE--EECC
Confidence            334444433  56699999999999999888752       33445565542   23    3345688899987  4567


Q ss_pred             CCc
Q psy15246         84 KPV   86 (213)
Q Consensus        84 ~~~   86 (213)
                      +.+
T Consensus        80 ~~i   82 (598)
T 2x8g_A           80 KFI   82 (598)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=95.62  E-value=0.0028  Score=43.22  Aligned_cols=52  Identities=15%  Similarity=0.315  Sum_probs=36.1

Q ss_pred             hhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        131 VREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ...+|.||++|        |.+.++      +.|..+|++.++++.+.+. ..+.||+ .++.+|+.+
T Consensus        29 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~-v~~~Pt~-~~~~~g~~~   94 (118)
T 2vm1_A           29 KLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYN-VEAMPTF-LFIKDGEKV   94 (118)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTT-CCSBSEE-EEEETTEEE
T ss_pred             CEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcC-CCcCcEE-EEEeCCeEE
Confidence            34678899999        333332      6788999999888877665 5566665 455688754

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=95.61  E-value=0.0031  Score=44.58  Aligned_cols=62  Identities=15%  Similarity=0.302  Sum_probs=41.4

Q ss_pred             hhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE-eCCeE---eehH--HH
Q psy15246        131 VREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY-VNTEL---IGGL--DI  189 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~-i~g~~---~gg~--d~  189 (213)
                      ...+|.||++|        |.+.++       +.|..+|++.++++++.+. ..++||+ .+| .+|+.   .|+.  +.
T Consensus        39 k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pt~-~~~~~~G~~~~~~G~~~~~~  116 (136)
T 2l5l_A           39 KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFG-IRSIPSI-LFIPMEGKPEMAQGAMPKAS  116 (136)
T ss_dssp             SCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTT-CCSSCEE-EEECSSSCCEEEESCCCHHH
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcC-CCCCCEE-EEECCCCcEEEEeCCCCHHH
Confidence            34788999999        444333       6789999999988877665 5566766 344 56764   5653  44


Q ss_pred             HHHHH
Q psy15246        190 IKELQ  194 (213)
Q Consensus       190 ~~~~~  194 (213)
                      +.++.
T Consensus       117 l~~~l  121 (136)
T 2l5l_A          117 FKKAI  121 (136)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=95.57  E-value=0.0097  Score=49.55  Aligned_cols=61  Identities=13%  Similarity=0.110  Sum_probs=40.0

Q ss_pred             EEEEEcCCCHHHHhHHH-HHHHHHHHcCCCcEEEEEEeC-CCc----hhHHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNT-LFDEMSKQSKYSQVVFARCIA-EDL----PKLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~-~~~~l~~~~~~~~v~~~~vd~-~~~----~~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|..+||++|++.+. .|+++.-.+.  .+.++.+|- +++    .++.+..+.+.+|.+  |-+|+.+
T Consensus       263 VvVYsk~~CPyC~~Ak~~LL~~~gV~y~--eidVlEld~~~~~~e~~~~L~~~tG~~TVPqV--FI~Gk~I  329 (362)
T 2jad_A          263 IFVASKTYCPYSHAALNTLFEKLKVPRS--KVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YINGKHI  329 (362)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTTCCCTT--TEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEE--EETTEEE
T ss_pred             EEEEEcCCCcchHHHHHHHHHHcCCCcc--eEEEEEeccccCCHHHHHHHHHHHCCCCcCEE--EECCEEE
Confidence            45589999999999876 5666554444  455554442 222    345566799999987  4477643

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=95.50  E-value=0.005  Score=43.11  Aligned_cols=53  Identities=13%  Similarity=0.158  Sum_probs=37.6

Q ss_pred             hhhhhheeccCC--------CCCC--CC-------CCceEEec---cCCHHHHHHHHhh---cCCCcccceE-eCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYP--QV-------VPYDTFDI---LQDQEVREGLKIY---SNWPTYPQVY-VNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~--~~-------v~~~~~d~---~~~~~~~~~l~~~---~~~pt~p~i~-i~g~~~  184 (213)
                      +...+|.||++|        |.+.  ++       +.+..+|+   +.+.++.+.+. .   .++||+ .++ -+|+.+
T Consensus        29 ~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~-v~~~~~~Pt~-~~~d~~G~~~  105 (133)
T 3fk8_A           29 HKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYG-DPIQDGIPAV-VVVNSDGKVR  105 (133)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTT-CGGGGCSSEE-EEECTTSCEE
T ss_pred             CCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhC-CccCCccceE-EEECCCCCEE
Confidence            334688899999        6666  43       77889999   77788877666 5   667776 333 478765

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=95.36  E-value=0.033  Score=38.98  Aligned_cols=56  Identities=9%  Similarity=0.093  Sum_probs=38.1

Q ss_pred             EEEEEEcCCCHHHH------hHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhC--------CCccccEEEEEeC
Q psy15246         21 AVVHFYADWSDECK------HMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNY--------KVSAVPTFVILKN   82 (213)
Q Consensus        21 ~vV~F~a~wC~~C~------~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~--------~I~~~Pti~~~~~   82 (213)
                      +|+.|+++.|+.|+      +.+..|+.     .  +|.|-.+|++.+++    +.++.        |...+|.|  |.+
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~-----k--gV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQI--Fi~   71 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVLGFLEA-----N--KIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQI--FNE   71 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHHHHHHH-----T--TCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEE--EET
T ss_pred             CEEEEecCCCCCccchHHHHHHHHHHHH-----C--CCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEE--EEC
Confidence            46778899999994      44444443     2  68899999987654    44566        77788865  456


Q ss_pred             CCC
Q psy15246         83 LKP   85 (213)
Q Consensus        83 g~~   85 (213)
                      |+.
T Consensus        72 ~~~   74 (121)
T 1u6t_A           72 SQY   74 (121)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            643

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=95.32  E-value=0.0012  Score=46.84  Aligned_cols=90  Identities=12%  Similarity=0.204  Sum_probs=54.5

Q ss_pred             ccCCCcccccchhhhhhhheeccCCC-------CCCCC-------CCceEEeccCCHHHHHHHHhhcC--CCcccceEeC
Q psy15246        117 HVPYDTFDILQDQEVREGLKIYSNWP-------TYPQV-------VPYDTFDILQDQEVREGLKIYSN--WPTYPQVYVN  180 (213)
Q Consensus       117 ~~~~~~f~~l~~~~~~~~v~~~apWP-------~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~--~pt~p~i~i~  180 (213)
                      .++..+|+.+.+.....++.||++|.       .+.++       +.|+.+|+++++++.+.+. +.+  .||+ .+|.+
T Consensus        10 ~~t~~~f~~~~~~~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~g-i~~~~iPtl-~i~~~   87 (133)
T 2djk_A           10 EIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLN-LKTDKFPAF-AIQEV   87 (133)
T ss_dssp             ECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTT-CCSSSSSEE-EEECT
T ss_pred             ccChHHHHHHhcCCCCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcC-CCcccCCEE-EEEec
Confidence            34555665333333446678888873       22222       7799999998877665555 344  5666 45554


Q ss_pred             --Ce---Ee--eh--HHHHHHHHH---cCCchhhccCCCC
Q psy15246        181 --TE---LI--GG--LDIIKELQV---ANKLIPTLDQPPS  208 (213)
Q Consensus       181 --g~---~~--gg--~d~~~~~~~---~~~l~~~~~~~~~  208 (213)
                        |+   ++  |.  .+.+++..+   +|+|...++..|.
T Consensus        88 ~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gkl~p~~kSe~i  127 (133)
T 2djk_A           88 AKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPI  127 (133)
T ss_dssp             TTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSSCCCCC
T ss_pred             CcCcccCCCCccccCHHHHHHHHHHHHcCCcCccccCCCC
Confidence              53   33  43  355655543   7999999987764

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=95.05  E-value=0.0065  Score=52.46  Aligned_cols=65  Identities=8%  Similarity=0.127  Sum_probs=45.0

Q ss_pred             cccccCCCcccccc--hhhhhhhheeccCC--------CCCCCC---------------CCceEEeccCCHHHHHHHHhh
Q psy15246        114 NITHVPYDTFDILQ--DQEVREGLKIYSNW--------PTYPQV---------------VPYDTFDILQDQEVREGLKIY  168 (213)
Q Consensus       114 ~~~~~~~~~f~~l~--~~~~~~~v~~~apW--------P~~~~~---------------v~~~~~d~~~~~~~~~~l~~~  168 (213)
                      .+..++..+|+.+.  +....++|.|||+|        |.+.++               +.|+.+|++.++++++.+. +
T Consensus        24 ~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~-V  102 (470)
T 3qcp_A           24 SVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD-I  102 (470)
T ss_dssp             TEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT-C
T ss_pred             CcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC-C
Confidence            35667788888443  23345899999999        444332               5678999999988887776 6


Q ss_pred             cCCCcccceEeC
Q psy15246        169 SNWPTYPQVYVN  180 (213)
Q Consensus       169 ~~~pt~p~i~i~  180 (213)
                      .++||+ .+|.+
T Consensus       103 ~~~PTl-ilf~~  113 (470)
T 3qcp_A          103 NFVPRL-FFFYP  113 (470)
T ss_dssp             CSSCEE-EEEEE
T ss_pred             CccCeE-EEEEC
Confidence            677777 44443

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=95.02  E-value=0.018  Score=43.82  Aligned_cols=43  Identities=16%  Similarity=0.209  Sum_probs=33.9

Q ss_pred             hHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         64 KLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        64 ~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +.++++||.++||++++.+|+.+....|..+. .|.+.|++.++
T Consensus       167 ~~a~~~gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~  210 (216)
T 2in3_A          167 QRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWLQ  210 (216)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999864456787665 68888887764

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=95.01  E-value=0.031  Score=38.56  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=25.4

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      +..|+.|+|+.|++.+..+++.       ++.+-.+|..++
T Consensus         2 i~iY~~~~C~~C~kak~~L~~~-------gi~~~~~di~~~   35 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDEH-------KVAYDFHDYKAV   35 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT-------TCCEEEEEHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHC-------CCceEEEeecCC
Confidence            4568899999999998888772       455666776543

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.99  E-value=0.0024  Score=45.39  Aligned_cols=74  Identities=15%  Similarity=0.130  Sum_probs=45.8

Q ss_pred             hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe----Eeeh-------
Q psy15246        132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE----LIGG-------  186 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~----~~gg-------  186 (213)
                      ..+|.||++|        |.+.++      +.|..+|++...   +. .+..++||+ .+|.+|+    ++|.       
T Consensus        32 ~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~-~~i~~~Pt~-~~~~~G~~v~~~~G~~~~~~~~  106 (135)
T 2dbc_A           32 WVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EH-YHDNCLPTI-FVYKNGQIEGKFIGIIECGGIN  106 (135)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SS-CCSSCCSEE-EEESSSSCSEEEESTTTTTCTT
T ss_pred             EEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---cc-CCCCCCCEE-EEEECCEEEEEEEeEEeeCCCc
Confidence            4788999999        555444      677888887753   11 224567777 5667886    4453       


Q ss_pred             --HHHHHHH-HHcCCchhhccCCCCCC
Q psy15246        187 --LDIIKEL-QVANKLIPTLDQPPSSD  210 (213)
Q Consensus       187 --~d~~~~~-~~~~~l~~~~~~~~~~~  210 (213)
                        .+++.++ .+.|-+..-++..|+.+
T Consensus       107 ~~~~~l~~~l~~~~~i~~~~~~~~~~~  133 (135)
T 2dbc_A          107 LKLEELEWKLSEVGAIQSDLEENSGPS  133 (135)
T ss_dssp             CCHHHHHHHHHHHTSSCCCSCCCSCSS
T ss_pred             CCHHHHHHHHHHcCCccccccCCCCCC
Confidence              4555444 44555555566666653

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=94.81  E-value=0.0047  Score=42.37  Aligned_cols=64  Identities=9%  Similarity=-0.016  Sum_probs=35.0

Q ss_pred             CCCcccccchhhhhhhheeccCC--------CCCCCC-----CCceEEeccCCH------HHHHHHHhhcCCCcccceEe
Q psy15246        119 PYDTFDILQDQEVREGLKIYSNW--------PTYPQV-----VPYDTFDILQDQ------EVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       119 ~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-----v~~~~~d~~~~~------~~~~~l~~~~~~pt~p~i~i  179 (213)
                      +...|+.........+|.||+||        |.+.++     .++..+|+....      ++++.+. ..+.||+ .+|.
T Consensus        18 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-i~~~Pt~-~~~~   95 (118)
T 1zma_A           18 TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYG-IPTVPGF-VHIT   95 (118)
T ss_dssp             CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHT-CCSSCEE-EEEE
T ss_pred             CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcC-CCCCCeE-EEEE
Confidence            34444432233345788999999        444444     467778776532      2222222 3455665 4456


Q ss_pred             CCeEe
Q psy15246        180 NTELI  184 (213)
Q Consensus       180 ~g~~~  184 (213)
                      +|+.+
T Consensus        96 ~G~~~  100 (118)
T 1zma_A           96 DGQIN  100 (118)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            88754

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=94.80  E-value=0.0032  Score=43.23  Aligned_cols=62  Identities=21%  Similarity=0.423  Sum_probs=37.3

Q ss_pred             ccccCCCccccc-chhhhhhhheeccCC--------CCCCC------------CCCceEEeccCCHHHHHHHHhhcCCCc
Q psy15246        115 ITHVPYDTFDIL-QDQEVREGLKIYSNW--------PTYPQ------------VVPYDTFDILQDQEVREGLKIYSNWPT  173 (213)
Q Consensus       115 ~~~~~~~~f~~l-~~~~~~~~v~~~apW--------P~~~~------------~v~~~~~d~~~~~~~~~~l~~~~~~pt  173 (213)
                      +..++..+|+.. .+.....+|.||++|        |.+.+            -+.|+.+|++.++ +++   +..++||
T Consensus         9 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~---~v~~~Pt   84 (121)
T 2djj_A            9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD---EIQGFPT   84 (121)
T ss_dssp             SEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS---CCSSSSE
T ss_pred             eEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc---ccCcCCe
Confidence            455677788744 344555899999999        33332            2567889998764 222   3444555


Q ss_pred             ccceEeCC
Q psy15246        174 YPQVYVNT  181 (213)
Q Consensus       174 ~p~i~i~g  181 (213)
                      + .+|-+|
T Consensus        85 ~-~~~~~~   91 (121)
T 2djj_A           85 I-KLYPAG   91 (121)
T ss_dssp             E-EEECSS
T ss_pred             E-EEEeCc
Confidence            5 333344

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=94.75  E-value=0.007  Score=41.87  Aligned_cols=55  Identities=11%  Similarity=0.059  Sum_probs=38.0

Q ss_pred             hhhhhheeccCC--------CCCCCC-----CCceEEeccCCHH----HHHHHHhhc-CCCcccceEeCCeEeeh
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-----VPYDTFDILQDQE----VREGLKIYS-NWPTYPQVYVNTELIGG  186 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-----v~~~~~d~~~~~~----~~~~l~~~~-~~pt~p~i~i~g~~~gg  186 (213)
                      +...+|.|+|.|        |.++++     ++|.++|+.++.+    +.+.++ .. ..||+ .+|.||+.+.-
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~-V~h~sPq~-il~k~G~~v~~   96 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTN-VKHESPQA-FYFVNGEMVWN   96 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHT-CCCCSSEE-EEEETTEEEEE
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhccCCceEEEEEeecCchhhHHHHHHhC-CccCCCeE-EEEECCEEEEE
Confidence            334677888888        555544     8899999999866    455554 33 35777 56788987753

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=94.74  E-value=0.0052  Score=42.83  Aligned_cols=53  Identities=15%  Similarity=0.164  Sum_probs=36.2

Q ss_pred             hhhhheeccCC------------CCCCCC-----CCceEEeccCCH--HHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        131 VREGLKIYSNW------------PTYPQV-----VPYDTFDILQDQ--EVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       131 ~~~~v~~~apW------------P~~~~~-----v~~~~~d~~~~~--~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ...+|.|||+|            |.++..     +.+..+|++.+.  ++.. ..++.+.||+ .+|-+|+-|+
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~-~~~V~g~PT~-i~f~~G~ev~   90 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLEL-ARPVTFTPTF-VLMAGDVESG   90 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBC-SSCCCSSSEE-EEEETTEEEE
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHH-HCCCCCCCEE-EEEECCEEEe
Confidence            34789999999            444444     678899999862  3332 2235577888 6777998554

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=94.69  E-value=0.057  Score=37.59  Aligned_cols=50  Identities=16%  Similarity=0.051  Sum_probs=34.8

Q ss_pred             CCCHHHHhHHHHHHHHHHHcCCCcE-EEEEEeCCCchhHH----HhCCCccccEEEEEeCCCCc
Q psy15246         28 DWSDECKHMNTLFDEMSKQSKYSQV-VFARCIAEDLPKLS----LNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        28 ~wC~~C~~~~~~~~~l~~~~~~~~v-~~~~vd~~~~~~l~----~~~~I~~~Pti~~~~~g~~~   86 (213)
                      |.|++|++....|...       ++ .|..+|.+.++++.    +.-+-+.+|.+  |-+|+.+
T Consensus        33 P~C~fc~~ak~lL~~~-------gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqI--FI~g~~I   87 (118)
T 2wul_A           33 PQCGFSNAVVQILRLH-------GVRDYAAYNVLDDPELRQGIKDYSNWPTIPQV--YLNGEFV   87 (118)
T ss_dssp             BSSHHHHHHHHHHHHT-------TCCSCEEEETTSCHHHHHHHHHHHTCCSSCEE--EETTEEE
T ss_pred             CCCHHHHHHHHHHHHh-------CCcCeEeecccCCHHHHHHHHHhccCCCCCeE--eECCEEE
Confidence            6799999999888653       23 26667887776544    44467788886  5677654

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=94.69  E-value=0.057  Score=40.39  Aligned_cols=43  Identities=12%  Similarity=0.035  Sum_probs=34.9

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHc-CCCcEEEEEEeC
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQS-KYSQVVFARCIA   59 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~-~~~~v~~~~vd~   59 (213)
                      ...+.+||.|....||+|+++.+.+..+.+++ ++ +|.++.-+.
T Consensus        12 g~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g-~v~~v~r~~   55 (182)
T 3gn3_A           12 GHGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGED-NVTVRIRLQ   55 (182)
T ss_dssp             ECCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTT-TEEEEEEEC
T ss_pred             CCCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCC-CEEEEEEEc
Confidence            45678899999999999999999988876665 55 788876664

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=94.50  E-value=0.0017  Score=50.36  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=39.5

Q ss_pred             CCCccc-ccchh--hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        119 PYDTFD-ILQDQ--EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       119 ~~~~f~-~l~~~--~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      +..+|. .+.+.  ....+|.||+||        |.+.++      +.|..+|++ +++++..+. ..++||+ .+|.+|
T Consensus       106 ~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~-i~~~PTl-~~~~~G  182 (217)
T 2trc_P          106 TGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFS-SDVLPTL-LVYKGG  182 (217)
T ss_dssp             SHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSC-GGGCSEE-EEEETT
T ss_pred             CHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCC-CCCCCEE-EEEECC
Confidence            455665 33222  245789999999        333332      778899987 444444433 5567877 677889


Q ss_pred             eEe
Q psy15246        182 ELI  184 (213)
Q Consensus       182 ~~~  184 (213)
                      +.+
T Consensus       183 ~~v  185 (217)
T 2trc_P          183 ELI  185 (217)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=94.35  E-value=0.029  Score=34.93  Aligned_cols=46  Identities=15%  Similarity=0.153  Sum_probs=25.2

Q ss_pred             heeccCC-CCCCCC------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        135 LKIYSNW-PTYPQV------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       135 v~~~apW-P~~~~~------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      |.||++| |.+.+.            .++..+.++ +.++.+.+    +...+|+++++|+.+.
T Consensus         4 v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~-~~~~~~~~----~v~~~Pt~~~~G~~~~   62 (77)
T 1ilo_A            4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK-EMDQILEA----GLTALPGLAVDGELKI   62 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC-SHHHHHHH----TCSSSSCEEETTEEEE
T ss_pred             EEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec-CHHHHHHC----CCCcCCEEEECCEEEE
Confidence            5678888 333222            233333333 55555444    3456777777998653

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=94.26  E-value=0.0022  Score=50.77  Aligned_cols=63  Identities=16%  Similarity=0.213  Sum_probs=38.9

Q ss_pred             CCCccc-ccch--hhhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC
Q psy15246        119 PYDTFD-ILQD--QEVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT  181 (213)
Q Consensus       119 ~~~~f~-~l~~--~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g  181 (213)
                      +...|. .+.+  .....+|.||+||        |.+.++      +.|..+|++. .++...+. ..+.||+ .+|.+|
T Consensus       119 s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~-I~~~PTl-l~~~~G  195 (245)
T 1a0r_P          119 SGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFS-SDVLPTL-LVYKGG  195 (245)
T ss_dssp             SHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSC-TTTCSEE-EEEETT
T ss_pred             CHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCC-CCCCCEE-EEEECC
Confidence            445565 3322  2445789999999        433333      7888899865 33333332 4567887 677889


Q ss_pred             eEe
Q psy15246        182 ELI  184 (213)
Q Consensus       182 ~~~  184 (213)
                      +.+
T Consensus       196 ~~v  198 (245)
T 1a0r_P          196 ELL  198 (245)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=94.02  E-value=0.18  Score=44.10  Aligned_cols=63  Identities=19%  Similarity=0.176  Sum_probs=43.5

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ...+.+++.|.....       ....+++..+.. ..+.+..++ +.+.+++++|||+.+|++++|..+...
T Consensus       155 ~~~~~vallF~~~~s-------~~~~~~~ldl~~~~~v~v~~v~-~~~~~l~~kfgV~~~Pslvl~~~nGk~  218 (519)
T 3t58_A          155 NKADYLALVFEREDS-------YLGREVTLDLSQYHAVAVRRVL-NTESDLVNKFGVTDFPSCYLLLRNGSV  218 (519)
T ss_dssp             CCCSEEEEEEECTTC-------CHHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEEEETTSCE
T ss_pred             CCCCeEEEEecCCch-------HHHHHHHHHhhccCCeeEEEec-CchHHHHHHcCCCCCCeEEEEeCCCce
Confidence            456678888887652       244555555543 257776555 456799999999999999999855433

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=94.01  E-value=0.038  Score=41.06  Aligned_cols=56  Identities=5%  Similarity=0.033  Sum_probs=42.1

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEE-EEEEeCCC---chhHHHhCCCc
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVV-FARCIAED---LPKLSLNYKVS   72 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~-~~~vd~~~---~~~l~~~~~I~   72 (213)
                      .++.+++.|| +.|||.|....+.|.+...+++..++. ++.|.++.   +...++++++.
T Consensus        41 ~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~~  101 (171)
T 2xhf_A           41 RGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPE  101 (171)
T ss_dssp             TTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCTT
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence            5667777777 589999999999999988888743564 77777765   44677777764

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=93.60  E-value=0.23  Score=37.81  Aligned_cols=44  Identities=14%  Similarity=0.032  Sum_probs=33.2

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHH-HcC-CCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSK-QSK-YSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~-~~~-~~~v~~~~vd~~   60 (213)
                      ..+.+||.|...-||+|+++.+.+....+ +|. +.+|.++..+.-
T Consensus        14 ~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~p   59 (205)
T 3gmf_A           14 AAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFV   59 (205)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECC
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeCC
Confidence            46678999999999999999987755444 772 227888776653

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=93.59  E-value=0.16  Score=37.59  Aligned_cols=43  Identities=16%  Similarity=0.139  Sum_probs=32.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHH-HHHHHHcCC-CcEEEEEEeC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLF-DEMSKQSKY-SQVVFARCIA   59 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~-~~l~~~~~~-~~v~~~~vd~   59 (213)
                      ..+..|+.|+...||+|..+.+.+ ..+.+.+.+ .++.+.....
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~   54 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNL   54 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEec
Confidence            456789999999999999999998 567777752 2566666554

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=93.33  E-value=0.069  Score=42.68  Aligned_cols=30  Identities=10%  Similarity=0.119  Sum_probs=25.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHH
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQ   46 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~   46 (213)
                      +++.+++.|+-+.||+|+++.+.+++..+.
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~  175 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKE  175 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHH
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhC
Confidence            467899999999999999999999865554

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=93.18  E-value=0.016  Score=40.14  Aligned_cols=56  Identities=14%  Similarity=0.157  Sum_probs=35.0

Q ss_pred             hhhhhheeccC-------C--------CCCCCC-------CCceEEec-------cCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        130 EVREGLKIYSN-------W--------PTYPQV-------VPYDTFDI-------LQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       130 ~~~~~v~~~ap-------W--------P~~~~~-------v~~~~~d~-------~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      ....+|.||++       |        |.+.++       +.|..+|+       +.+.++++.+. ..+.||+ .+|-+
T Consensus        24 ~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~-i~~~Pt~-~~~~~  101 (123)
T 1wou_A           24 GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLK-VTAVPTL-LKYGT  101 (123)
T ss_dssp             TSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHC-CCSSSEE-EETTS
T ss_pred             CCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCC-CCeeCEE-EEEcC
Confidence            33478899999       9        444332       67888999       56667766644 5566666 34444


Q ss_pred             CeEeehH
Q psy15246        181 TELIGGL  187 (213)
Q Consensus       181 g~~~gg~  187 (213)
                      |..+.|.
T Consensus       102 ~~~~~g~  108 (123)
T 1wou_A          102 PQKLVES  108 (123)
T ss_dssp             SCEEEGG
T ss_pred             CceEecc
Confidence            5544443

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=92.28  E-value=0.016  Score=40.18  Aligned_cols=52  Identities=13%  Similarity=0.077  Sum_probs=30.0

Q ss_pred             hhhhhheeccCC--------CCC---CCC-------CCceEEeccC--CHHHHHHHHhhcCCCcccceE--eCCeE
Q psy15246        130 EVREGLKIYSNW--------PTY---PQV-------VPYDTFDILQ--DQEVREGLKIYSNWPTYPQVY--VNTEL  183 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~---~~~-------v~~~~~d~~~--~~~~~~~l~~~~~~pt~p~i~--i~g~~  183 (213)
                      ....+|.||++|        |.+   +++       +.+..+|++.  +.++++.+. ..++||+ .++  .+|+.
T Consensus        19 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~-v~~~Pt~-~~~d~~~G~~   92 (130)
T 2lst_A           19 GRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYR-VPGTPTF-VFLVPKAGAW   92 (130)
Confidence            445788999999        555   444       4566777743  344554443 4455555 222  24765

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=92.05  E-value=0.13  Score=36.29  Aligned_cols=34  Identities=12%  Similarity=0.216  Sum_probs=25.8

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      +..|+.++|+.|++....+++.       ++.+-.+|..++
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~-------gi~y~~~di~~~   36 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH-------EIPFVERNIFSE   36 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------CCceEEEEccCC
Confidence            4568899999999999888873       455666777654

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=91.95  E-value=0.11  Score=41.46  Aligned_cols=25  Identities=20%  Similarity=0.209  Sum_probs=20.6

Q ss_pred             HHhhcCCCcc--cceEeCCe-EeehHHH
Q psy15246        165 LKIYSNWPTY--PQVYVNTE-LIGGLDI  189 (213)
Q Consensus       165 l~~~~~~pt~--p~i~i~g~-~~gg~d~  189 (213)
                      +.+..+.+++  ||+||||+ ++||+|.
T Consensus       104 ~~~~~G~~tVyTPqI~Ing~~~v~G~d~  131 (270)
T 2axo_A          104 YMRALGRNGVYTPQAILNGRDHVKGADV  131 (270)
T ss_dssp             HHHHTTCSCCCSSEEEETTTEEEETTCH
T ss_pred             HHHHhCCCcccCCEEEECCEEeecCCCH
Confidence            4545578899  99999999 8999873

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=91.90  E-value=0.0084  Score=44.03  Aligned_cols=53  Identities=11%  Similarity=0.229  Sum_probs=33.3

Q ss_pred             hhhhhheeccCC--------CCCCCC-------CCceEEeccCCHH-HHHHHHhh--cCCCcccceE-eCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQE-VREGLKIY--SNWPTYPQVY-VNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~-~~~~l~~~--~~~pt~p~i~-i~g~~~  184 (213)
                      ....+|.||++|        |.+.++       +.|..+|++.+++ ....+. +  .++||+ .+| .+|+.+
T Consensus        46 ~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~-~~~~~~Pt~-~~~d~~G~~~  117 (164)
T 1sen_A           46 GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFS-PDGGYIPRI-LFLDPSGKVH  117 (164)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGC-TTCSCSSEE-EEECTTSCBC
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhc-ccCCcCCeE-EEECCCCCEE
Confidence            445788999999        655554       7899999987654 333332 3  335665 233 467643

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=91.37  E-value=0.2  Score=34.41  Aligned_cols=38  Identities=11%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC
Q psy15246         19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED   61 (213)
Q Consensus        19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~   61 (213)
                      +.+++.|..|.|+-|+.....+.++..     +..+.+||+-.
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~led-----eY~ilrVNIlS   39 (124)
T 2g2q_A            2 KNVLIIFGKPYCSICENVSDAVEELKS-----EYDILHVDILS   39 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHTTTT-----TEEEEEEECCC
T ss_pred             CceEEEeCCCccHHHHHHHHHHHHhhc-----cccEEEEEeee
Confidence            568899999999999998888755444     56688888644

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=91.10  E-value=0.048  Score=37.63  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             hhhhhheeccCC--------CCC---CCC-------CCceEEeccC--CHHHHHHHHhhcCCCcccceE-eCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTY---PQV-------VPYDTFDILQ--DQEVREGLKIYSNWPTYPQVY-VNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~---~~~-------v~~~~~d~~~--~~~~~~~l~~~~~~pt~p~i~-i~g~~~  184 (213)
                      ....+|.||++|        |.+   +.+       +.+..+|++.  +.++++.+. ..++||+ .++ -+|+.+
T Consensus        27 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~-v~~~Pt~-~~~d~~G~~~  100 (130)
T 2kuc_A           27 DKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYG-VHAYPTL-LFINSSGEVV  100 (130)
T ss_dssp             SSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTT-CCSSCEE-EEECTTSCEE
T ss_pred             CCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcC-CCCCCEE-EEECCCCcEE
Confidence            345788999999        444   222       4556777774  345555444 4455655 222 367654

>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A

Probab=90.71  E-value=0.11  Score=35.26  Aligned_cols=60  Identities=13%  Similarity=0.102  Sum_probs=48.5

Q ss_pred             CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246         19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus        19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      +..+..|-+-.-+.+++....+.++.+.+-+..+.+-.||..++++++..++|-.+||++
T Consensus         7 ~~~L~LyVaG~tp~S~~ai~nL~~i~e~~l~~~y~LeVIDv~~~PelAe~~~IvAtPTLi   66 (105)
T 1wwj_A            7 TYVLKLYVAGNTPNSVRALKMLKNILEQEFQGVYALKVIDVLKNPQLAEEDKILATPTLA   66 (105)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCSCCTTCEEECHHHHG
T ss_pred             ceEEEEEEeCCCchHHHHHHHHHHHHHHhcCCCeEEEEEEcccCHhHHhHCCeEEechhh
Confidence            345555666688889998888888766543337999999999999999999999999974

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=90.51  E-value=0.15  Score=37.82  Aligned_cols=62  Identities=11%  Similarity=0.139  Sum_probs=40.6

Q ss_pred             CcccccchhhhhhhheeccCC--------C-CCCC--C-------CCceEEeccCCHHHHHHHH-------hhcCCCccc
Q psy15246        121 DTFDILQDQEVREGLKIYSNW--------P-TYPQ--V-------VPYDTFDILQDQEVREGLK-------IYSNWPTYP  175 (213)
Q Consensus       121 ~~f~~l~~~~~~~~v~~~apW--------P-~~~~--~-------v~~~~~d~~~~~~~~~~l~-------~~~~~pt~p  175 (213)
                      ..|+.....+...+|.|+++|        | +|..  +       +.+..+|.++.+++.+.+.       +..++||+ 
T Consensus        30 ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~-  108 (173)
T 3ira_A           30 EAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLN-  108 (173)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEE-
T ss_pred             HHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcce-
Confidence            344444445556889999999        4 4432  2       5567889988888876653       46678887 


Q ss_pred             ceEe--CCeEe
Q psy15246        176 QVYV--NTELI  184 (213)
Q Consensus       176 ~i~i--~g~~~  184 (213)
                       +|+  +|+.+
T Consensus       109 -v~l~~dG~~v  118 (173)
T 3ira_A          109 -IIMTPGKKPF  118 (173)
T ss_dssp             -EEECTTSCEE
T ss_pred             -eeECCCCCce
Confidence             444  57754

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=90.24  E-value=0.31  Score=33.75  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=25.7

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      +..|+.|+|+.|++....+++.       ++.+-.+|..++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~~di~~~   35 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRH-------DVVFQEHNIMTS   35 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT-------TCCEEEEETTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccC
Confidence            4568899999999999888763       456667777654

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=89.74  E-value=0.28  Score=36.23  Aligned_cols=38  Identities=29%  Similarity=0.382  Sum_probs=27.0

Q ss_pred             hhHHHhCCCccccEEEEEeCCCCcccccCCCc-hhHHHHHHHHh
Q psy15246         63 PKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-ESLDKKLQNQA  105 (213)
Q Consensus        63 ~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~-~~l~~~i~~~~  105 (213)
                      ..+++++||.++||+++  +|+.+   .|..+ +.|.+.|++.+
T Consensus       139 ~~~a~~~gv~GtPt~vv--nG~~~---~G~~~~~~l~~~i~~~~  177 (186)
T 3bci_A          139 KKIAKDNHIKTTPTAFI--NGEKV---EDPYDYESYEKLLKDKI  177 (186)
T ss_dssp             HHHHHHTTCCSSSEEEE--TTEEC---SCTTCHHHHHHHHHC--
T ss_pred             HHHHHHcCCCCCCeEEE--CCEEc---CCCCCHHHHHHHHHHHH
Confidence            44678899999999987  78643   46544 47888887765

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=88.48  E-value=0.63  Score=32.19  Aligned_cols=34  Identities=6%  Similarity=0.145  Sum_probs=25.3

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      +..|+.|+|+.|++....+++.       ++.+-.+|..++
T Consensus         5 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~~di~~~   38 (120)
T 3fz4_A            5 LTFYEYPKCSTCRRAKAELDDL-------AWDYDAIDIKKN   38 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------CCceEEEEeccC
Confidence            4467899999999999888764       455666776554

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=87.77  E-value=0.29  Score=36.13  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=29.2

Q ss_pred             chhHHHhCCCccccEEEEEeCCCCcccccCCCc-hhHHHHHHHHhc
Q psy15246         62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP-ESLDKKLQNQAS  106 (213)
Q Consensus        62 ~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~-~~l~~~i~~~~~  106 (213)
                      +...++++||.++||+++  +|+......|..+ +.+.+.|+..++
T Consensus       151 ~~~~a~~~gv~gtPt~~i--ng~~~~~~~g~~~~~~l~~~i~~~l~  194 (195)
T 3c7m_A          151 WKASYDVAKIQGVPAYVV--NGKYLIYTKSIKSIDAMADLIRELAS  194 (195)
T ss_dssp             GGGHHHHHHHHCSSEEEE--TTTEEECGGGCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCccCEEEE--CCEEEeccCCCCCHHHHHHHHHHHHh
Confidence            345678889999999765  7764322336544 478888887763

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=87.52  E-value=0.17  Score=36.33  Aligned_cols=28  Identities=21%  Similarity=0.296  Sum_probs=19.3

Q ss_pred             hhhhheec-cCC--------CCC---CCC-------CCceEEeccCC
Q psy15246        131 VREGLKIY-SNW--------PTY---PQV-------VPYDTFDILQD  158 (213)
Q Consensus       131 ~~~~v~~~-apW--------P~~---~~~-------v~~~~~d~~~~  158 (213)
                      ...+|.|| ++|        |.+   +++       +.+..+|+..+
T Consensus        48 k~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~   94 (154)
T 2ju5_A           48 KPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQK   94 (154)
T ss_dssp             CCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSS
T ss_pred             CeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccc
Confidence            34688899 999        655   222       56677888765

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=87.50  E-value=0.45  Score=36.16  Aligned_cols=39  Identities=23%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             hhHH-HhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         63 PKLS-LNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        63 ~~l~-~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ...+ +++||+++||+++  +|+.   +.|..+. .|.+.|++.++
T Consensus       157 ~~~a~~~~GV~GtPtfvv--ng~~---~~G~~~~e~l~~~i~~~~~  197 (205)
T 3gmf_A          157 TDEAINQYNVSGTPSFMI--DGIL---LAGTHDWASLRPQILARLN  197 (205)
T ss_dssp             HHHHHHHHCCCSSSEEEE--TTEE---CTTCCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCccCCEEEE--CCEE---EeCCCCHHHHHHHHHHHhh
Confidence            3456 8899999999987  7764   4566554 79999988864

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=86.66  E-value=0.18  Score=35.14  Aligned_cols=52  Identities=17%  Similarity=0.239  Sum_probs=29.8

Q ss_pred             hhhhheeccCC--------CCC---CCC------CCceEEeccCC----HHHHHHHHhhcCCCcccceE-eCCeEe
Q psy15246        131 VREGLKIYSNW--------PTY---PQV------VPYDTFDILQD----QEVREGLKIYSNWPTYPQVY-VNTELI  184 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~---~~~------v~~~~~d~~~~----~~~~~~l~~~~~~pt~p~i~-i~g~~~  184 (213)
                      ...+|.||++|        |.+   +++      +.+..+|++.+    .++++.+. ..++||+ .++ .+|+.+
T Consensus        32 k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~-v~~~Pt~-~~~d~~G~~v  105 (134)
T 2fwh_A           32 KPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLN-VLGLPTI-LFFDGQGQEH  105 (134)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTT-CCSSSEE-EEECTTSCBC
T ss_pred             CcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcC-CCCCCEE-EEECCCCCEe
Confidence            34778899999        444   333      67788898654    23333332 3345555 233 467764

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=85.67  E-value=0.54  Score=34.93  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=24.0

Q ss_pred             hHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHH
Q psy15246         64 KLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKL  101 (213)
Q Consensus        64 ~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i  101 (213)
                      ..++++||+++||+++  ||+.+....|..+. ++.++|
T Consensus       145 ~~a~~~GV~gtPtf~i--ng~~~~~~s~~~~~e~w~~~l  181 (182)
T 3gn3_A          145 KYARQNGIHVSPTFMI--NGLVQPGMSSGDPVSKWVSDI  181 (182)
T ss_dssp             HHHHHHTCCSSSEEEE--TTEECTTCCTTSCHHHHHHHH
T ss_pred             HHHHHCCCCccCEEEE--CCEEccCCCCCCCHHHHHHHh
Confidence            4678899999999976  88766544443333 455443

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=84.78  E-value=0.64  Score=32.16  Aligned_cols=34  Identities=9%  Similarity=0.151  Sum_probs=25.2

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      +..|+.|+|+.|++....+++.       ++.+-.+|..++
T Consensus         6 i~iY~~p~C~~c~ka~~~L~~~-------gi~~~~~di~~~   39 (120)
T 3gkx_A            6 TLFLQYPACSTCQKAKKWLIEN-------NIEYTNRLIVDD   39 (120)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTT
T ss_pred             EEEEECCCChHHHHHHHHHHHc-------CCceEEEecccC
Confidence            4568899999999998887762       455666676543

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=84.10  E-value=0.046  Score=39.72  Aligned_cols=52  Identities=4%  Similarity=-0.086  Sum_probs=28.6

Q ss_pred             hhhhhheeccCC--------CCCCCC--------CCceEEeccCC-HHHHHHHHhhcCCCcccceEe-CCeE
Q psy15246        130 EVREGLKIYSNW--------PTYPQV--------VPYDTFDILQD-QEVREGLKIYSNWPTYPQVYV-NTEL  183 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~-~~~~~~l~~~~~~pt~p~i~i-~g~~  183 (213)
                      ....+|.|||+|        |.+.+.        ..|..++++.+ .+..... ...++||+ .+|- +|+.
T Consensus        44 ~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~-~v~~~PT~-~f~~~~G~~  113 (151)
T 3ph9_A           44 KKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSP-DGQYVPRI-MFVDPSLTV  113 (151)
T ss_dssp             TCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCT-TCCCSSEE-EEECTTSCB
T ss_pred             CCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhc-CCCCCCEE-EEECCCCCE
Confidence            445788999999        433222        37888888643 2222211 23456666 2332 5664

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=83.27  E-value=2.7  Score=28.36  Aligned_cols=49  Identities=10%  Similarity=0.106  Sum_probs=34.6

Q ss_pred             cEEEEEEeCCCch----------hHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHH
Q psy15246         51 QVVFARCIAEDLP----------KLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKL  101 (213)
Q Consensus        51 ~v~~~~vd~~~~~----------~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i  101 (213)
                      ++.+.+.|...++          ++.+++|+..+|.+++  +|+.+..-.-++.++|.+|+
T Consensus        43 Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~~~LP~~~V--DGevv~~G~yPt~eEl~~~l  101 (106)
T 3ktb_A           43 GIIVTRHNLRDEPQVYVSNKTVNDFLQKHGADALPITLV--DGEIAVSQTYPTTKQMSEWT  101 (106)
T ss_dssp             TCCCEEEETTTCTTHHHHSHHHHHHHHTTCGGGCSEEEE--TTEEEECSSCCCHHHHHHHH
T ss_pred             CCEEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE--CCEEEEeccCCCHHHHHHHh
Confidence            6888999988776          5678899999999765  77755421113334777775

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=81.47  E-value=3.7  Score=27.90  Aligned_cols=50  Identities=12%  Similarity=0.095  Sum_probs=35.4

Q ss_pred             cEEEEEEeCCCch----------hHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHH
Q psy15246         51 QVVFARCIAEDLP----------KLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ  102 (213)
Q Consensus        51 ~v~~~~vd~~~~~----------~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~  102 (213)
                      ++.+.+.|...++          ++.+++|+..+|.+++  +|+.+..-.-.+.++|.+|+.
T Consensus        40 Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~~~LP~~~V--DGevv~~G~yPt~eEl~~~lg   99 (110)
T 3kgk_A           40 GVQIERFNLAQQPMSFVQNEKVKAFIEASGAEGLPLLLL--DGETVMAGRYPKRAELARWFG   99 (110)
T ss_dssp             TCCEEEEETTTCTTHHHHSHHHHHHHHHHCGGGCCEEEE--TTEEEEESSCCCHHHHHHHHT
T ss_pred             CCeEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE--CCEEEEeccCCCHHHHHHHhC
Confidence            5888999988776          5778899999999765  777654211233347887764

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=80.38  E-value=0.86  Score=32.47  Aligned_cols=52  Identities=6%  Similarity=-0.043  Sum_probs=33.7

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc----hhHHHhCCCccccEEEEEe
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL----PKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~----~~l~~~~~I~~~Pti~~~~   81 (213)
                      ..|+.|+|+.|++....+++.       ++.+-.+|..++    .++.+.++-.++|.--+++
T Consensus         5 tiY~~p~C~~crkak~~L~~~-------gi~~~~idi~~~~~~~~eL~~~~~~~g~p~~~l~n   60 (141)
T 1s3c_A            5 TIYHNPASGTSRNTLEMIRNS-------GTEPTIILYLENPPSRDELVKLIADMGISVRALLR   60 (141)
T ss_dssp             EEECCTTCHHHHHHHHHHHHT-------TCCCEEECTTTSCCCHHHHHHHHHHHTSCHHHHBC
T ss_pred             EEEECCCChHHHHHHHHHHHc-------CCCEEEEECCCCCccHHHHHHHhcccCCCHHHhcc
Confidence            457799999999998888772       456666777653    2344444444556444554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	213
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	9e-14
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	2e-13
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	5e-13
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	1e-12
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	2e-12
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	3e-12
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	7e-12
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	1e-11
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	4e-11
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	3e-10
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	4e-10
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	5e-10
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	6e-10
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	1e-09
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	5e-09
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	6e-09
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	9e-09
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	4e-08
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	4e-08
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	6e-08
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	2e-06
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	2e-06
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	3e-06
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	5e-06
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	1e-05
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	2e-05
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-05
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	2e-05
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	2e-05
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	2e-05
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	2e-05
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	4e-05
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	7e-05
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	8e-05
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	5e-04
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	5e-04
d1abaa_	87	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	8e-04
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	0.003
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	0.004

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 9e-14
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 1   MSVVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
           + V  +  + D +        + AVV F       C  +       S  +KY Q VF   
Sbjct: 1   VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIA--PAFSSMSNKYPQAVFLEV 58

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
                   +    +SA PTF   +N   +D+ +GAD   L++K++
Sbjct: 59  DVHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIK 103

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 62.1 bits (150), Expect = 2e-13
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 3/106 (2%)

Query: 3   VVQISEE--LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
           V +++++    + K   DK  V+  +  W   CK M   +++++++      +      +
Sbjct: 8   VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLK-LDCNQ 66

Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           +   L+    +  VPTF ILK    V  V GA  + L + +Q   S
Sbjct: 67  ENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 112

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 61.3 bits (148), Expect = 5e-13
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 2   SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
           +V    E  +  K G  K  VV F A W   CK +  +F E++K+  +  V F +   ++
Sbjct: 11  TVDTWKEHFEKGK-GSQKLIVVDFTASWCPPCKMIAPIFAELAKK--FPNVTFLKVDVDE 67

Query: 62  LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           L  ++  + V A+PTF+ LK+ K VD+  GAD + L   +   A+
Sbjct: 68  LKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHAT 112

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 1e-12
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 3   VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
           V QI  +   ++      DK  VV F A W   CK +   F  +S++  YS V+F     
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEK--YSNVIFLEVDV 59

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
           +D   ++   +V  +PTF   K  + V    GA+ E L+  + 
Sbjct: 60  DDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 59.8 bits (144), Expect = 2e-12
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 2   SVVQIS--EELD--VEKYGKD-KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFAR 56
           SV+ I      D  + K  ++ K  VV F A W   CK +  LF+ +S      +V+F +
Sbjct: 3   SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLK 61

Query: 57  CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQAS 106
              + +  ++    ++A+PTF + K+    D + GA  + L   +   A+
Sbjct: 62  VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 58.7 bits (141), Expect = 3e-12
 Identities = 26/105 (24%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 1   MSVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
           + +V    E D     +++  +V F+A+W   CK +   ++E SK   Y+++VF +   +
Sbjct: 2   VKIVTSQAEFD-SIISQNELVIVDFFAEWCGPCKRIAPFYEECSKT--YTKMVFIKVDVD 58

Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQA 105
           ++ +++    ++++PTF + KN   VD + GA+  +L + ++  A
Sbjct: 59  EVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (139), Expect = 7e-12
 Identities = 35/55 (63%), Positives = 47/55 (85%)

Query: 149 PYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
            Y+TFDIL+D+EVR+GLK +SNWPTYPQ+YV  +L+GGLDI+KEL+   +L+P L
Sbjct: 46  EYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPIL 100

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.7 bits (144), Expect = 1e-11
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 2   SVVQISEELD----VEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC 57
            V ++         +EK  K  T VV+ Y D    C  +N+  + ++ +    +      
Sbjct: 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFC---K 156

Query: 58  IAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
           I          +    +PT ++ K  + +        +  + 
Sbjct: 157 IRASNTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAED 198

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 56.0 bits (134), Expect = 4e-11
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 1   MSVVQI-SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
            SVV + S E       +D   V  F A W   CK +           ++  V FA+  A
Sbjct: 8   PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIE--RPMEKIAYEFPTVKFAKVDA 65

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN 103
           ++  ++    +V  +PTF+I ++ K +  V GA+P  L +KL++
Sbjct: 66  DNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRD 109

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 53.9 bits (129), Expect = 3e-10
 Identities = 10/86 (11%), Positives = 23/86 (26%)

Query: 11  DVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYK 70
           D      D   ++      + E      +  E+ ++        A    E    +   + 
Sbjct: 29  DWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFG 88

Query: 71  VSAVPTFVILKNLKPVDRVEGADPES 96
           V   P  ++         + G  P +
Sbjct: 89  VFRFPATLVFTGGNYRGVLNGIHPWA 114

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 53.5 bits (128), Expect = 4e-10
 Identities = 14/94 (14%), Positives = 29/94 (30%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL 62
            V+ S   D  K   D   ++      + E      +  E+ ++        A    E  
Sbjct: 15  PVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQS 74

Query: 63  PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
             +   + V   P  ++  + K    + G  P +
Sbjct: 75  EAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWA 108

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 52.9 bits (126), Expect = 5e-10
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 1  MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
            V+ I++   + E    ++  +V+F+A W   C+ M+ L +  +      ++   +   
Sbjct: 2  KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS-DRLKVVKLEI 60

Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
          +  P     YKV  VP   ++K  + +D  EG   + 
Sbjct: 61 DPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKD 97

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 52.9 bits (126), Expect = 6e-10
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
                VV F A W   C+ +   F +++K+      +           ++ ++ + A+PT
Sbjct: 27  SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDEL--KSVASDWAIQAMPT 84

Query: 77  FVILKNLKPVDRVEGADPESLDKKLQNQAS 106
           F+ LK  K +D+V GA  + L   +    +
Sbjct: 85  FMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 51.1 bits (122), Expect = 1e-09
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
           V +    I  +   RE +   S   T PQ++++ + IGG D +  L     L P L
Sbjct: 26  VSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLL 81

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.3 bits (119), Expect = 5e-09
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 3   VVQISEELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
           V Q+ ++ D++        K  V+ F+A W   CK ++    E+S Q     VV  +   
Sbjct: 7   VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDV 65

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ 102
           ++   +++ Y +S++PTFV LKN   V+   GA+ + L+  ++
Sbjct: 66  DECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 108

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 49.8 bits (118), Expect = 6e-09
 Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 3  VVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
          ++ ++++  D +    D   +V F+A+W   CK +  + DE++ +    ++  A+   + 
Sbjct: 4  IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE-YQGKLTVAKLNIDQ 62

Query: 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
           P  +  Y +  +PT ++ KN +      GA  + 
Sbjct: 63 NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKG 97

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 49.4 bits (117), Expect = 9e-09
 Identities = 22/106 (20%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 2   SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
           + + +++    +    DK  +V F+A W   C+ M  + +E ++     +V  A+   ++
Sbjct: 1   ATMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA-DKVTVAKLNVDE 59

Query: 62  LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES-----LDKKLQ 102
            P+ +  + + ++PT ++ K  +PV ++ G  P+      L   LQ
Sbjct: 60  NPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ 105

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWP--TYPQVYVNTELIGGLDIIKELQVANKLIPTL 203
           + Y   DI QD  +R+ ++  +  P  T PQ+       G  ++  E    + L   L
Sbjct: 33  IQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 47.6 bits (112), Expect = 4e-08
 Identities = 18/97 (18%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 1  MSVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA 59
          M    ++++             +V F+A W   C+ +  + DE++ + K  ++   +   
Sbjct: 1  MEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNT 59

Query: 60 EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
          ++ P ++  Y + ++PT ++ K  K  + + GA P++
Sbjct: 60 DESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKA 96

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.0 bits (111), Expect = 6e-08
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 136 KIYSNWPTYPQVVPYDTFDILQDQEVREG-LKIYSNWPTYPQVYVNTELIGGLDIIKELQ 194
           ++ S  P    ++ +       D    +  L+  +   T P+V++  E IGG   ++ + 
Sbjct: 30  ELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMH 89

Query: 195 VANKLIPTLDQ 205
              +L+  L Q
Sbjct: 90  KRGELLTRLQQ 100

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 2/99 (2%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYS--QVVFARCIAE 60
           V+ + +    E     K  +V FYA W   CK +   + + + + K    ++  A+  A 
Sbjct: 9   VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 68

Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
           +   L+  Y V   PT    +N       E       D 
Sbjct: 69  EESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADD 107

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 2   SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
           +VV+++ +   E        +  F+A W   CK+M   + + ++      +  A+    +
Sbjct: 11  AVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE 70

Query: 62  LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
              L + + +   P+  I KN    + ++   P + + 
Sbjct: 71  NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEA 108

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 3e-06
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT 76
          +D+  V+ F  DW   C  M+ +   ++++   +  V       ++P  +  Y++    T
Sbjct: 21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEK-VKNFAVIYLVDITEVPDFNKMYELYDPCT 79

Query: 77 FVILKNLKPVDRVEGADPES 96
           +     K +    G    +
Sbjct: 80 VMFFFRNKHIMIDLGTGNNN 99

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 41.7 bits (97), Expect = 5e-06
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 2/99 (2%)

Query: 3   VVQI-SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQ-SKYSQVVFARCIAE 60
           V  + ++  +       K  ++ FYA W   CK +   ++E+    +K            
Sbjct: 4   VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 63

Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
           D     +  ++   PT  +         V  +   +++ 
Sbjct: 64  DATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVED 102

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL--DIIKELQVA 196
             ++  ++ +  E  E L     +   P V        G   D+I  L  A
Sbjct: 26  FDFEMINVDRVPEAAEAL-RAQGFRQLPVVIAGDLSWSGFRPDMINRLHPA 75

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 9/108 (8%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSD------ECKHMNTLFDEMSKQSKYSQVVFAR 56
           V+ ++ +     + K +   + ++    D      + +    + +  ++  +   V F  
Sbjct: 13  VINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGL 72

Query: 57  CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQ 104
             +E    ++    ++   +  + K  + ++       ++L + L + 
Sbjct: 73  VDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDV 120

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 145 PQVVPYDTFDILQDQEVREGLKIYSNWP--TYPQVYVNTELIGGLDIIKEL 193
                Y   DI  +   +E L+  +  P  T PQ++V+ + IGG       
Sbjct: 28  RDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAW 78

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 40.3 bits (93), Expect = 2e-05
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 3/97 (3%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK---YSQVVFARCIA 59
           +   +     E   K +TA           C+        +  ++K   Y          
Sbjct: 11  LEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQL 70

Query: 60  EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
            DL      Y +  VP FV + + +   R + +    
Sbjct: 71  NDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQ 107

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 39.2 bits (91), Expect = 2e-05
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL--DIIKELQ 194
           + Y+T DI  D E R+ +     +   P V V+ E   G   + IK+LQ
Sbjct: 26  LAYNTVDISLDDEARDYVMAL-GYVQAPVVEVDGEHWSGFRPERIKQLQ 73

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.3 bits (91), Expect = 2e-05
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 22  VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK 81
           +  F +     C     + DE  K+      V    I  D  + ++ Y + AVP   I  
Sbjct: 5   IEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD-REKAIEYGLMAVPAIAING 63

Query: 82  NLKPVDRVEGADPES-----LDKKLQ 102
            ++      GA         ++ +++
Sbjct: 64  VVR----FVGAPSREELFEAINDEME 85

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 2   SVVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE 60
           SV Q+  +  D       K  +V +YA W   CK +   + E++     +         +
Sbjct: 13  SVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLD 72

Query: 61  DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDK 99
                     +   PT V+    K  + V      SLD 
Sbjct: 73  HTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDS 111

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.8 bits (89), Expect = 4e-05
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 19  KTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV 78
           K  +  F +     C     + +E++ +   +  V    + E+  K ++ Y + AVPT V
Sbjct: 3   KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK-AMEYGIMAVPTIV 61

Query: 79  ILKNLKPVDRVEGADPES-----LDKKL 101
           I  +++      GA  +      + K+L
Sbjct: 62  INGDVE----FIGAPTKEALVEAIKKRL 85

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 38.7 bits (89), Expect = 7e-05
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 17  KDKTAVVHFYADWSDECKHMNTLFDEM---SKQSKYSQVVFARCIAEDLPKLSLNYKVSA 73
                ++ F       C     +  +    + ++   +++     A + P+ +  Y V A
Sbjct: 14  DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA 73

Query: 74  VPTFVILKNLKPVDRVEGADPES-LDKKLQNQAS 106
           VP  VI  N +     EGA PE    +KL +  S
Sbjct: 74  VPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSALS 107

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.6 bits (87), Expect = 8e-05
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKE 192
           + ++   +  D      ++  S   T PQV++  + IGG D +++
Sbjct: 30  LSFEEIILGHDAT-IVSVRAVSGRTTVPQVFIGGKHIGGSDDLEK 73

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 10/113 (8%), Positives = 25/113 (22%), Gaps = 9/113 (7%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHM------NTLFDEMSKQSKYSQVVFAR 56
            + +      +   K K  +V F   +    K                       +    
Sbjct: 6   ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYG 65

Query: 57  CIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVE---GADPESLDKKLQNQAS 106
                           + P F + ++    + V         ++ + L+ Q  
Sbjct: 66  DKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQGV 118

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 36.1 bits (82), Expect = 5e-04
 Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 3  VVQISEE-LDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED 61
          V  +++          +   +V F+A W   CK +  + DE++K+    ++   +   ++
Sbjct: 1  VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKE-YSGKIAVYKLNTDE 59

Query: 62 LPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPES 96
           P ++  Y + ++PT +  KN +  + + GA P+S
Sbjct: 60 APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKS 94

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]} Length = 87

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

 Score = 35.1 bits (80), Expect = 8e-04
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV-NTELIGGLDIIKEL 193
                 D    + + +  +      T PQV+  +   IGG D ++E 
Sbjct: 39  EKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQLREY 85

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 7/100 (7%)

Query: 3   VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA--- 59
            V + E    +   +   +VV F        KH        S       ++ A       
Sbjct: 4   CVDLDELSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDY 63

Query: 60  --EDLPKLSLNYK--VSAVPTFVILKNLKPVDRVEGADPE 95
              +   L   YK      P+  + K          +  +
Sbjct: 64  GELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVD 103

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 28/114 (24%)

Query: 17  KDKTAVVHFYADWSDECKH----MNTLFDEMSKQSKYSQVVFARCIAEDLPK-------- 64
            +K  ++HF++     CK     +N   D+   Q     V   R   +  P         
Sbjct: 28  GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAE 87

Query: 65  --------------LSLNYKVSAVP-TFVILKNLKPVDRVEGA-DPESLDKKLQ 102
                         L+  ++   VP  +V  K  +      G    + L+K++ 
Sbjct: 88  HDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.94
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.94
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.94
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.94
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.94
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.93
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.93
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.93
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.92
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.92
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.92
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.92
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.92
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.92
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.89
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.89
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.87
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.87
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.86
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.85
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.85
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.85
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.84
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.84
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.82
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.81
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.8
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.77
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.76
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.76
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.73
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.68
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	99.65
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.6
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.57
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.57
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.54
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.53
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.51
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.51
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.49
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.42
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.42
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.42
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.42
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.41
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.39
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.39
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.31
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.25
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.22
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.12
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	98.99
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	98.89
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.8
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.7
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.59
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	98.55
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.47
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.47
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.44
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.42
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.39
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.35
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.34
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.31
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.3
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.3
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.28
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.28
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.26
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.23
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.21
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	98.2
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.17
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.15
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.13
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.11
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.11
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.08
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.07
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.03
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.0
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.98
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	97.98
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.95
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.94
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.94
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.93
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.92
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	97.89
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.86
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.83
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.8
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	97.75
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	97.74
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.71
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.7
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	97.69
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.66
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.65
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	97.63
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.62
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.62
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	97.61
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.6
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	97.52
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	97.42
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	97.41
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.36
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	97.33
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.33
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.32
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	97.21
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.18
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	97.16
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	97.05
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.02
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	96.99
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	96.97
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	96.91
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.89
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	96.82
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	96.73
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	96.09
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	95.83
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	95.51
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	95.13
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	94.62
d1wjka_	100	Thioredoxin-like structure containing protein C330	94.54
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	94.0
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	92.93
d1r5pa_	90	Circadian oscillation regulator KaiB {Cyanobacteri	92.05
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	91.21
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	89.0
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	88.63
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	87.14
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	85.68
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	83.49
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	83.3
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	83.2
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	83.06
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	82.36

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.94  E-value=2.6e-27  Score=165.13  Aligned_cols=105  Identities=17%  Similarity=0.413  Sum_probs=96.1

Q ss_pred             CceEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          1 MSVVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         1 M~v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      |++..+|++.+.+ +++++++++|.|||+||++|+++.|.+.+++.++.+ ++.++.||++.+++++++|+|+++||+++
T Consensus         1 m~~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~   79 (107)
T d1dbya_           1 MEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESPNVASEYGIRSIPTIMV   79 (107)
T ss_dssp             CCCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHHTCCSSCEEEE
T ss_pred             CCceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcc-cceEEEEecccchhHHHHhcccceEEEEE
Confidence            8999999965555 457788999999999999999999999999999987 89999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         80 LKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |++|+.+.++.|..+. +|.++|+++++
T Consensus        80 ~~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          80 FKGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             ESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             EECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            9999999999998775 79999999863

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.94  E-value=2.7e-27  Score=164.44  Aligned_cols=103  Identities=20%  Similarity=0.490  Sum_probs=96.0

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +.+++|++++.+.++++++++|+|||+||++|+.+.|.+++++.++++ ++.|++||++++++++++|+|.++||+++|+
T Consensus         1 a~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~   79 (105)
T d1nw2a_           1 ATMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             CCEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             CEEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCC-ceEEEEEECCCCcccHHHCCcceeeEEEEEE
Confidence            368899987888899999999999999999999999999999999997 8999999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHHHh
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      +|+.+.++.|..+. +|.++|++++
T Consensus        80 ~G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          80 GGEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             TTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHh
Confidence            99999999998876 7999988775

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.94  E-value=6.7e-27  Score=163.25  Aligned_cols=104  Identities=20%  Similarity=0.344  Sum_probs=94.7

Q ss_pred             ceEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      .|+++|++++.. +++++++++|.|||+||++|+++.|.|++++.++++ .+.++.||++++++++++|+|+++||+++|
T Consensus         3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~   81 (108)
T d1thxa_           3 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPNPTTVKKYKVEGVPALRLV   81 (108)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCC-cceeceecccccHHHHHHhcccCCCEEEEE
Confidence            488999965554 568889999999999999999999999999999997 799999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ++|+.+.++.|..+. +|.++|+++++
T Consensus        82 ~~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          82 KGEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            999999999998765 79999999873

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.2e-26  Score=160.61  Aligned_cols=103  Identities=19%  Similarity=0.408  Sum_probs=94.3

Q ss_pred             ceEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      .|++||++.+.+ ++.++++++|+|||+||++|+++.|.+.+++.++.+ ++.++.+|+++++.++++|+|+++||+++|
T Consensus         3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~   81 (108)
T d2trxa_           3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc-ceeeeeccccchhhHHHHhCCCcEEEEEEE
Confidence            589999965544 568899999999999999999999999999999887 899999999999999999999999999999


Q ss_pred             eCCCCcccccCCCch-hHHHHHHHHh
Q psy15246         81 KNLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      ++|+.+.++.|..+. +|.++|+++|
T Consensus        82 ~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          82 KNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            999999999998765 7999999886

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.94  E-value=1.8e-26  Score=159.97  Aligned_cols=102  Identities=21%  Similarity=0.453  Sum_probs=92.6

Q ss_pred             eEEeCCchhhh-hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISEELDVE-KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~~~~~~-~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      |.+||++.+.+ +++++++++|.|||+||++|+++.|.++++++.+.+ .+.++.||++++++++++|+|+++||+++|+
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~   79 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRSIPTVLFFK   79 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcC-ccceeEEecccchhhhhhcceeeeeEEEEEE
Confidence            57899965555 457788999999999999999999999999999987 7899999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHHHh
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      +|+.+.++.|..+. +|.++|+++|
T Consensus        80 ~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          80 NGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             TTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             cCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            99999999998665 7999999874

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8e-26  Score=157.49  Aligned_cols=103  Identities=23%  Similarity=0.343  Sum_probs=93.3

Q ss_pred             CceEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          1 MSVVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         1 M~v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      |.|..+.+ +.+.+.+  +++++++|+|||+||++|+++.|.|++++++++  ++.|+++|++++++++++|+|+++||+
T Consensus         1 ~~v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d~~~~l~~~~~v~~~Pt~   78 (107)
T d1gh2a_           1 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATNNISATPTF   78 (107)
T ss_dssp             CCEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             CceEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccc--cccccccccccchhhhhhcCceeceEE
Confidence            78888877 4444445  558899999999999999999999999999998  689999999999999999999999999


Q ss_pred             EEEeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         78 VILKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      ++|++|+.+.++.|.+..+|.++|++++
T Consensus        79 ~~~~~G~~v~~~~G~~~~~l~~~i~k~l  106 (107)
T d1gh2a_          79 QFFRNKVRIDQYQGADAVGLEEKIKQHL  106 (107)
T ss_dssp             EEEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCHHHHHHHHHHhh
Confidence            9999999999999987778999999986

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.93  E-value=6.8e-26  Score=159.38  Aligned_cols=103  Identities=27%  Similarity=0.417  Sum_probs=94.4

Q ss_pred             ceEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          2 SVVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      +++++++ +.+.++++++++++|+|||+||++|+++.|.|++++++++  ++.|++||++++++++++|+|+++||+++|
T Consensus         9 ~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   86 (113)
T d1r26a_           9 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQLPTFIIA   86 (113)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc--cccccccccccchhhHHHccccCCCEEEEE
Confidence            4788877 6666778999999999999999999999999999999998  799999999999999999999999999999


Q ss_pred             eCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         81 KNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        81 ~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      ++|+.+.+..|.+...+.+.|++.++
T Consensus        87 ~~G~~v~~~~G~~~~~l~~~l~~~ik  112 (113)
T d1r26a_          87 RSGKMLGHVIGANPGMLRQKLRDIIK  112 (113)
T ss_dssp             ETTEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCHHHHHHHHHHHhc
Confidence            99999999999887788888888764

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-25  Score=155.98  Aligned_cols=101  Identities=28%  Similarity=0.471  Sum_probs=90.3

Q ss_pred             eEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      |.++++ +.+.+.+  +++++++|+|||+||++|+.+.|.++++++.++  ++.|+++|++++++++++|+|+++||+++
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~   79 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVASECEVKCMPTFQF   79 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCBSSEEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccc--cceeeecccccCHhHHHHcCceEEEEEEE
Confidence            567877 4455555  457899999999999999999999999999998  57899999999999999999999999999


Q ss_pred             EeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         80 LKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      |++|+.+.++.|.+.++|.++|++++
T Consensus        80 ~~~G~~v~~~~G~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          80 FKKGQKVGEFSGANKEKLEATINELV  105 (105)
T ss_dssp             EETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred             EECCEEEEEEeCCCHHHHHHHHHhhC
Confidence            99999999999987778999998764

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.93  E-value=1e-25  Score=155.86  Aligned_cols=100  Identities=22%  Similarity=0.476  Sum_probs=90.6

Q ss_pred             eEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      |..+++ +.+.++++++++++|+|||+||++|+++.|.+++++++++  ++.|+.+|++++++++++|+|+++||+++|+
T Consensus         2 v~~i~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k   79 (103)
T d1syra_           2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEVSEVTEKENITSMPTFKVYK   79 (103)
T ss_dssp             CEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTTHHHHHHTTCCSSSEEEEEE
T ss_pred             cEEeCCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhccc--ceEEEeeccccCcceeeeeeeecceEEEEEE
Confidence            344555 6666678889999999999999999999999999999998  6789999999999999999999999999999


Q ss_pred             CCCCcccccCCCchhHHHHHHHH
Q psy15246         82 NLKPVDRVEGADPESLDKKLQNQ  104 (213)
Q Consensus        82 ~g~~~~~~~g~~~~~l~~~i~~~  104 (213)
                      +|+.+.++.|.+..+|.++|+++
T Consensus        80 ~G~~v~~~~G~~~~~l~~~i~k~  102 (103)
T d1syra_          80 NGSSVDTLLGANDSALKQLIEKY  102 (103)
T ss_dssp             TTEEEEEEESCCHHHHHHHHHTT
T ss_pred             CCEEEEEEeCcCHHHHHHHHHhh
Confidence            99999999998777899999886

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.92  E-value=2.7e-25  Score=156.05  Aligned_cols=104  Identities=25%  Similarity=0.418  Sum_probs=93.0

Q ss_pred             ceEEeCC-chhhhhh----cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccE
Q psy15246          2 SVVQISE-ELDVEKY----GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPT   76 (213)
Q Consensus         2 ~v~~l~~-~~~~~~~----~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pt   76 (213)
                      .|+.+++ +.+++.+    .++++++|+|||+||++|+.+.|.|+++++++++ ++.|+.||++++++++++|+|+++||
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt   81 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITAMPT   81 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccc-eEEEEEeeccccccccccccccCCCE
Confidence            4778866 3333443    4679999999999999999999999999999996 79999999999999999999999999


Q ss_pred             EEEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         77 FVILKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        77 i~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      +++|++|+.+.++.|.+.++|.++|+++++
T Consensus        82 ~~~~~~G~~v~~~~G~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          82 FHVYKDGVKADDLVGASQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred             EEEEECCEEEEEEeCcCHHHHHHHHHHHhC
Confidence            999999999999999877799999999864

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=5e-25  Score=154.37  Aligned_cols=102  Identities=26%  Similarity=0.473  Sum_probs=91.3

Q ss_pred             eEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          3 VVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      |.++.+ +.+...+  +++++++|+|||+||++|+.+.|.|+++++++++ .+.++.+|++++++++++|+|+++||+++
T Consensus         7 v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~d~~~~l~~~~~V~~~Pt~~~   85 (111)
T d1xwaa_           7 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDECEDIAMEYNISSMPTFVF   85 (111)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             EEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhccc-ceEEEEEEeecCcchhhcCCCccccEEEE
Confidence            567877 3334444  5789999999999999999999999999999997 79999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         80 LKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      |++|+.+.++.|.++.+|.++|++++
T Consensus        86 ~~~G~~v~~~~G~~~~~l~~~I~~~l  111 (111)
T d1xwaa_          86 LKNGVKVEEFAGANAKRLEDVIKANI  111 (111)
T ss_dssp             EETTEEEEEEESCCHHHHHHHHHHTC
T ss_pred             EECCEEEEEEeCCCHHHHHHHHHhcC
Confidence            99999999999998888999998763

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=5.8e-25  Score=154.80  Aligned_cols=101  Identities=26%  Similarity=0.514  Sum_probs=90.7

Q ss_pred             eEEeCC-chhhhhh----cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          3 VVQISE-ELDVEKY----GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         3 v~~l~~-~~~~~~~----~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      |+.+.+ +.+.+.+    +++++++|+|||+||++|+++.|.++++++.++  ++.|+.||++++++++++|+|+++||+
T Consensus         8 vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~~~~~l~~~~~V~~~Pt~   85 (114)
T d1xfla_           8 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDELKSVASDWAIQAMPTF   85 (114)
T ss_dssp             CEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             EEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccc--ccceeEEEeeeceeeccccceeeeEEE
Confidence            677766 4343333    678999999999999999999999999999998  699999999999999999999999999


Q ss_pred             EEEeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         78 VILKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      ++|++|+.+.++.|.+.++|.++|++++
T Consensus        86 ~~~~~G~~v~~~~G~~~~~l~~~i~k~l  113 (114)
T d1xfla_          86 MFLKEGKILDKVVGAKKDELQSTIAKHL  113 (114)
T ss_dssp             EEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred             EEEECCEEEEEEeCcCHHHHHHHHHHhh
Confidence            9999999999999988779999999986

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.4e-24  Score=153.97  Aligned_cols=104  Identities=18%  Similarity=0.336  Sum_probs=92.2

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      |++++++.+.+.+++++.++|.||++||++|+++.|.|+++++.+.+.++.|+.||+++++++|++|+|+++||+++|++
T Consensus        12 v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~f~~   91 (119)
T d2b5ea4          12 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKN   91 (119)
T ss_dssp             CEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             cEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeEEEEEC
Confidence            78999988888889999999999999999999999999999999975479999999999999999999999999999999


Q ss_pred             CCCccc--ccCCCc-hhHHHHHHHHhc
Q psy15246         83 LKPVDR--VEGADP-ESLDKKLQNQAS  106 (213)
Q Consensus        83 g~~~~~--~~g~~~-~~l~~~i~~~~~  106 (213)
                      |+...+  +.|... ++|.+||+++++
T Consensus        92 g~~~~~~~y~g~~~~~~l~~fi~k~~~  118 (119)
T d2b5ea4          92 SDVNNSIDYEGPRTAEAIVQFMIKQSQ  118 (119)
T ss_dssp             TCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             CEEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            976653  345444 479999998864

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.92  E-value=4.6e-25  Score=155.11  Aligned_cols=102  Identities=31%  Similarity=0.532  Sum_probs=90.8

Q ss_pred             eEEeCC-chhhh----hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEE
Q psy15246          3 VVQISE-ELDVE----KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTF   77 (213)
Q Consensus         3 v~~l~~-~~~~~----~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti   77 (213)
                      |+++.+ +...+    ...++++++|+|||+||++|+.+.|.|++++++++  ++.|+.+|++++++++++|+|+++||+
T Consensus         6 vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~I~~~Pt~   83 (113)
T d1ti3a_           6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDELKAVAEEWNVEAMPTF   83 (113)
T ss_dssp             EEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred             EEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC--CceEEeeeeeccccccccCeecccceE
Confidence            667766 32222    24678999999999999999999999999999998  689999999999999999999999999


Q ss_pred             EEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         78 VILKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        78 ~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      ++|++|+.+.+..|.+.++|.++|+++..
T Consensus        84 ~~~k~G~~v~~~~G~~~~~l~~~i~k~as  112 (113)
T d1ti3a_          84 IFLKDGKLVDKTVGADKDGLPTLVAKHAT  112 (113)
T ss_dssp             EEEETTEEEEEEECCCTTHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEcCCCHHHHHHHHHHHhC
Confidence            99999999999999887899999999863

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.92  E-value=6.7e-25  Score=153.99  Aligned_cols=101  Identities=24%  Similarity=0.420  Sum_probs=91.6

Q ss_pred             eEEeCCchhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC-chhHHHhCCCccccEEEE
Q psy15246          3 VVQISEELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED-LPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         3 v~~l~~~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~-~~~l~~~~~I~~~Pti~~   79 (213)
                      |++++.+.+...+  +.+++++|+||++||++|+.+.|.|++++++++  ++.++.+|+++ +++++++|+|+++||+++
T Consensus         8 v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~   85 (112)
T d1f9ma_           8 VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLAKELGIRVVPTFKI   85 (112)
T ss_dssp             EEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSTTHHHHHHHCCSSSSEEEE
T ss_pred             eEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccc--cceeecccccccchhhHhheeeccCCEEEE
Confidence            7889887777776  446899999999999999999999999999998  68899999975 899999999999999999


Q ss_pred             EeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         80 LKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      |++|+.+.++.|.+.+++.++|+++.
T Consensus        86 ~k~G~~v~~~~G~~~~~l~e~i~~~~  111 (112)
T d1f9ma_          86 LKENSVVGEVTGAKYDKLLEAIQAAR  111 (112)
T ss_dssp             EETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCHHHHHHHHHHcc
Confidence            99999999999998888999998763

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.1e-24  Score=150.01  Aligned_cols=104  Identities=20%  Similarity=0.344  Sum_probs=91.1

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |+.++++.+.+++++++.++|.|||+||++|+++.|.|+++++.+.+  .++.++.||++.+++++.+|+|.++||+++|
T Consensus         9 V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~   88 (120)
T d1meka_           9 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFF   88 (120)
T ss_dssp             EEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEE
T ss_pred             eEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeEEEE
Confidence            67888877788888899999999999999999999999999999864  3599999999999999999999999999999


Q ss_pred             eCCCCcc--cccCCCch-hHHHHHHHHhc
Q psy15246         81 KNLKPVD--RVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        81 ~~g~~~~--~~~g~~~~-~l~~~i~~~~~  106 (213)
                      ++|+...  .+.|.... +|.+||++.++
T Consensus        89 ~~G~~~~~~~~~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          89 RNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             ESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             ECCeEeeeEEecCCCCHHHHHHHHHHhhC
Confidence            9986553  34565554 79999999864

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.89  E-value=2.8e-23  Score=148.15  Aligned_cols=105  Identities=9%  Similarity=0.077  Sum_probs=88.6

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEcCCCHH------HHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCcccc
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYADWSDE------CKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVP   75 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~------C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~P   75 (213)
                      .|++||++++...+.+++.++|.||||||+|      |..+.+.++.+++.+.+..+.|++|||++++++|++|+|+++|
T Consensus        12 ~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~~yP   91 (124)
T d1a8ya1          12 RVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEED   91 (124)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCCSTT
T ss_pred             ccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccccCC
Confidence            4889999888888888999999999999996      4555566677777766546999999999999999999999999


Q ss_pred             EEEEEeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         76 TFVILKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        76 ti~~~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      |+++|++|+.+.+.++++.+.|.+||.+.+.
T Consensus        92 Ti~~f~~g~~~~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          92 SIYVFKEDEVIEYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             CEEEEESSSEEECCSCCSHHHHHHHHHHHHS
T ss_pred             cEEEeccCccEEeeCCCCHHHHHHHHHHhcC
Confidence            9999999998875544555589999999874

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=2.6e-22  Score=139.35  Aligned_cols=101  Identities=22%  Similarity=0.241  Sum_probs=83.3

Q ss_pred             eCCchhhhhhcCCCe-EEEEEEcCCCHHHHhHHHHHHHHHHHcC---CCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          6 ISEELDVEKYGKDKT-AVVHFYADWSDECKHMNTLFDEMSKQSK---YSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         6 l~~~~~~~~~~~~~~-~vV~F~a~wC~~C~~~~~~~~~l~~~~~---~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      |+++....+...++. .++.|||+||++|+++.|.+++++.+.+   ...+.+..+|++++++++++|+|+++||+++++
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~   81 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQV   81 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEe
Confidence            455544444454555 4667999999999999999999976422   236999999999999999999999999999999


Q ss_pred             CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         82 NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        82 ~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|+.+.++.|..+. .+.++|++.++
T Consensus        82 ~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          82 NGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHhhC
Confidence            99999999998776 79999998763

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.7e-22  Score=145.13  Aligned_cols=101  Identities=15%  Similarity=0.229  Sum_probs=81.2

Q ss_pred             EEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          4 VQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         4 ~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      .+|.+ ...++.+  +.+++++|+|||+||++|+++.|.++++++++++ .+.|+.||++++++++++|+|+++||+++|
T Consensus         5 ~~l~s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~~~~la~~~~I~~~PT~~~f   83 (137)
T d1qgva_           5 PHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEVPDFNKMYELYDPCTVMFF   83 (137)
T ss_dssp             CBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTSSCSCSSCEEEEE
T ss_pred             cccCCHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhc-cceEEEeeccccchhhhhcCeeeEEEEEEE
Confidence            34555 2333333  4578999999999999999999999999999997 799999999999999999999999999999


Q ss_pred             eCCCCcccccCC-----------CchhHHHHHHHHh
Q psy15246         81 KNLKPVDRVEGA-----------DPESLDKKLQNQA  105 (213)
Q Consensus        81 ~~g~~~~~~~g~-----------~~~~l~~~i~~~~  105 (213)
                      ++|+.+....|.           +.+++.+.++...
T Consensus        84 ~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~  119 (137)
T d1qgva_          84 FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY  119 (137)
T ss_dssp             ETTEEEEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             eCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHH
Confidence            999877544442           2235677666553

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.86  E-value=3.2e-22  Score=141.53  Aligned_cols=101  Identities=11%  Similarity=0.069  Sum_probs=78.0

Q ss_pred             EeCCchhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          5 QISEELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         5 ~l~~~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      .++....+..+  ..++++++.|||+|||+|+++.|.++++++++++.++.++.||++++++++++|+|+++||+++|++
T Consensus        15 ~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~   94 (119)
T d2es7a1          15 PVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTD   94 (119)
T ss_dssp             ECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESC
T ss_pred             eecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEEEEc
Confidence            44554444443  4577899999999999999999999999999986569999999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHh
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      |+.+.+..|..+. ++.++|+..+
T Consensus        95 G~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          95 GKLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             C----CEESCCCHHHHHHHHHHHH
T ss_pred             CeEEEEeeCCCCHHHHHHHHHHHh
Confidence            9999999998776 7999998875

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.85  E-value=5.2e-22  Score=132.19  Aligned_cols=83  Identities=20%  Similarity=0.317  Sum_probs=73.6

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCC-Cchh
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA-DPES   96 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~-~~~~   96 (213)
                      ++..++.|||+||++|+++.|.|+++++.+++ .+.+..+|++++++++++|+|+++||++++++|+.    .|. +.++
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~~----~G~~~~~~   76 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMENPQKAMEYGIMAVPTIVINGDVEF----IGAPTKEA   76 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEEC----CSSSSSHH
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccccc-ccccccccccccccccccCCceEeeEEEEECCcEE----ECCCCHHH
Confidence            57889999999999999999999999999986 79999999999999999999999999998888763    354 4458


Q ss_pred             HHHHHHHHh
Q psy15246         97 LDKKLQNQA  105 (213)
Q Consensus        97 l~~~i~~~~  105 (213)
                      |.++|++++
T Consensus        77 l~~~i~~~L   85 (85)
T d1fo5a_          77 LVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999998874

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=3.3e-21  Score=136.88  Aligned_cols=102  Identities=18%  Similarity=0.158  Sum_probs=84.6

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCC-----CchhHHHhCCC--cc
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAE-----DLPKLSLNYKV--SA   73 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~-----~~~~l~~~~~I--~~   73 (213)
                      +++|+++++++++++++.+||.||||||+||++  |.|+++++.+..  ..+.+++||++     ++.+++++|+|  ++
T Consensus         4 ~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~   81 (122)
T d2c0ga2           4 CVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKN   81 (122)
T ss_dssp             CEECCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTS
T ss_pred             eEEcChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCC
Confidence            689999888999999999999999999999994  999999987642  37999999985     46899999988  58


Q ss_pred             ccEEEEEeCCCCcc---cccC-CCchhHHHHHHHHhc
Q psy15246         74 VPTFVILKNLKPVD---RVEG-ADPESLDKKLQNQAS  106 (213)
Q Consensus        74 ~Pti~~~~~g~~~~---~~~g-~~~~~l~~~i~~~~~  106 (213)
                      +||+++|++|+...   .+.| ++.++|.+||+++.+
T Consensus        82 ~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~  118 (122)
T d2c0ga2          82 FPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP  118 (122)
T ss_dssp             CCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcC
Confidence            99999999885322   2334 444589999999864

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.2e-22  Score=144.76  Aligned_cols=102  Identities=12%  Similarity=0.068  Sum_probs=88.9

Q ss_pred             EeCCchhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeC
Q psy15246          5 QISEELDVEKY--GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         5 ~l~~~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~   82 (213)
                      .++.+.....+  +.+++++|.|||+||++|+++.|.|+++++++++..+.++.||++++++++++|+|+++||+++|++
T Consensus        21 ~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~~~~  100 (132)
T d2hfda1          21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG  100 (132)
T ss_dssp             EECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEEEET
T ss_pred             ccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEEEEc
Confidence            45554444444  3456889999999999999999999999999997458899999999999999999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHHHHhc
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      |+.+.++.|..+. +|.++|+..+.
T Consensus       101 G~~v~~~~G~~~~~~l~~~i~~ll~  125 (132)
T d2hfda1         101 GNYRGVLNGIHPWAELINLMRGLVE  125 (132)
T ss_dssp             TEEEEEECCCSCHHHHHHHHHHHHS
T ss_pred             CcEeeeecCCCCHHHHHHHHHHHhC
Confidence            9999999998776 79999999875

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.84  E-value=9.6e-22  Score=138.24  Aligned_cols=104  Identities=17%  Similarity=0.230  Sum_probs=79.5

Q ss_pred             ceEEeCCchhhhh-hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCc-EEEEEEeCCCchhHHHhCCCccccEEEE
Q psy15246          2 SVVQISEELDVEK-YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQ-VVFARCIAEDLPKLSLNYKVSAVPTFVI   79 (213)
Q Consensus         2 ~v~~l~~~~~~~~-~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~-v~~~~vd~~~~~~l~~~~~I~~~Pti~~   79 (213)
                      +|.+|+.+++.+. +.++++++|.|||+||++|+++.|.|+++++.+.+.. ..+..+++......+.+++|+++||+++
T Consensus         3 ~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~~   82 (116)
T d2djja1           3 PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKL   82 (116)
T ss_dssp             SSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEEE
T ss_pred             CcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEEE
Confidence            5788998666554 5888999999999999999999999999999987521 1223344444455577899999999999


Q ss_pred             EeCCCCc--ccccCCCc-hhHHHHHHHHh
Q psy15246         80 LKNLKPV--DRVEGADP-ESLDKKLQNQA  105 (213)
Q Consensus        80 ~~~g~~~--~~~~g~~~-~~l~~~i~~~~  105 (213)
                      |++|+..  ..+.|... ++|.+||+++.
T Consensus        83 f~~g~~~~~~~~~g~~~~~~l~~fi~~~~  111 (116)
T d2djja1          83 YPAGAKGQPVTYSGSRTVEDLIKFIAENG  111 (116)
T ss_dssp             ECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             EECCccCceEEecCCCCHHHHHHHHHHcc
Confidence            9988533  23455544 48999999875

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.8e-21  Score=141.45  Aligned_cols=102  Identities=22%  Similarity=0.349  Sum_probs=82.6

Q ss_pred             ceEEeCCchhhhhh-cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC--CcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          2 SVVQISEELDVEKY-GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY--SQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         2 ~v~~l~~~~~~~~~-~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~--~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      +|++|+...+.+.+ ..++.++|.||||||++|+++.|.|+++++.+.+  ..+.++.+|++.  .+|++|+|+++||++
T Consensus        13 ~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~--~~~~~~~v~~~Ptl~   90 (140)
T d2b5ea1          13 SVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE--NDVRGVVIEGYPTIV   90 (140)
T ss_dssp             SEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG--CCCSSCCCSSSSEEE
T ss_pred             CcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc--hhccccccccCCeEE
Confidence            37889996666655 7788999999999999999999999999988763  246777777654  579999999999999


Q ss_pred             EEeCCCCccc--ccCCCc-hhHHHHHHHHh
Q psy15246         79 ILKNLKPVDR--VEGADP-ESLDKKLQNQA  105 (213)
Q Consensus        79 ~~~~g~~~~~--~~g~~~-~~l~~~i~~~~  105 (213)
                      +|++|+....  +.|... ++|.+||++..
T Consensus        91 ~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~  120 (140)
T d2b5ea1          91 LYPGGKKSESVVYQGSRSLDSLFDFIKENG  120 (140)
T ss_dssp             EECCTTSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred             EEECCEEcceeEeCCCCCHHHHHHHHHHcC
Confidence            9999865543  456544 48999999875

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.3e-20  Score=131.82  Aligned_cols=98  Identities=21%  Similarity=0.278  Sum_probs=78.4

Q ss_pred             EEeCC-chhhhhh--cCCCeEEEEEEcC-------CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-------CCchhHH
Q psy15246          4 VQISE-ELDVEKY--GKDKTAVVHFYAD-------WSDECKHMNTLFDEMSKQSKYSQVVFARCIA-------EDLPKLS   66 (213)
Q Consensus         4 ~~l~~-~~~~~~~--~~~~~~vV~F~a~-------wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-------~~~~~l~   66 (213)
                      +.+.+ +.+.+.+  .++++++|+|||+       ||++|+++.|.++++++.+++ ++.|+.||+       +.+..++
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~~~~d~~~~l~   82 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPNNDFR   82 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHHHCTTCHHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCcccchhhhhHH
Confidence            34444 4444455  4668999999995       999999999999999999987 799999998       4566799


Q ss_pred             HhCCCccccEEEEEeCCCCcccccCCCchhHHHHHH
Q psy15246         67 LNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQ  102 (213)
Q Consensus        67 ~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~  102 (213)
                      ++|+|+++||+++|++|+.+....+.+.+.+..+++
T Consensus        83 ~~~~V~~iPT~i~~~~g~~l~~~~~~~~~ll~~~~~  118 (119)
T d1woua_          83 KNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFS  118 (119)
T ss_dssp             HHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHH
T ss_pred             HhCCeEEEEEEEEEECCeEEeeeecCCHHHHHHHhc
Confidence            999999999999999998776555655555655554

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.81  E-value=1.9e-20  Score=131.54  Aligned_cols=95  Identities=14%  Similarity=0.177  Sum_probs=79.9

Q ss_pred             CCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc----hhHHHhCCCccccEEEEEeC
Q psy15246          7 SEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL----PKLSLNYKVSAVPTFVILKN   82 (213)
Q Consensus         7 ~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~----~~l~~~~~I~~~Pti~~~~~   82 (213)
                      +.+...+.++++++++|+||++||++|+++.|.|++++++++. .+.++.+|...+    ++++++|+|.++||+++|++
T Consensus        15 t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~-~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~~   93 (115)
T d1zmaa1          15 TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITD   93 (115)
T ss_dssp             CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEET
T ss_pred             CHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh-hhhhheeecccccccccccccccccccccEEEEEEC
Confidence            3366677789999999999999999999999999999999886 566665554332    46889999999999999999


Q ss_pred             CCCcccccCCCch-hHHHHHH
Q psy15246         83 LKPVDRVEGADPE-SLDKKLQ  102 (213)
Q Consensus        83 g~~~~~~~g~~~~-~l~~~i~  102 (213)
                      |+...++.|..+. +|.+||.
T Consensus        94 gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          94 GQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             TEEEEECCTTCCHHHHHHHHT
T ss_pred             CEEEEEEcCCCCHHHHHHHHc
Confidence            9998888887776 7888873

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.80  E-value=5.5e-20  Score=122.27  Aligned_cols=80  Identities=20%  Similarity=0.205  Sum_probs=68.7

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCC-CchhHHH
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA-DPESLDK   99 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~-~~~~l~~   99 (213)
                      .++.|||+||++|+++.|.|+++++++++ ++.++.+|++++++++++|+|+++||+++  +|+.  ++.|. +.++|.+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~~--~~~G~~~~~~l~~   78 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE   78 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccc-cccccccccccchhhHHhcCceEeCEEEE--CCcE--EEEcCCCHHHHHH
Confidence            35669999999999999999999999987 79999999999999999999999999876  4432  34565 4458999


Q ss_pred             HHHHHh
Q psy15246        100 KLQNQA  105 (213)
Q Consensus       100 ~i~~~~  105 (213)
                      +|++.+
T Consensus        79 ~i~~~l   84 (85)
T d1nhoa_          79 AINDEM   84 (85)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            999875

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3.1e-19  Score=123.75  Aligned_cols=86  Identities=47%  Similarity=0.857  Sum_probs=74.0

Q ss_pred             CCCCCCcccccCCCcccccchhhhhhhheeccCCCCCCCCCCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehH
Q psy15246        108 MKNQPSNITHVPYDTFDILQDQEVREGLKIYSNWPTYPQVVPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL  187 (213)
Q Consensus       108 ~kg~p~~~~~~~~~~f~~l~~~~~~~~v~~~apWP~~~~~v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~  187 (213)
                      +||+|.. +.|++..       .++.+|..+.        ++|..+|++.+++.++.+.++++++|+|||||+|++|||+
T Consensus        21 ~Kgt~~~-p~Cp~c~-------~ak~lL~~~~--------i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi~g~~IGG~   84 (109)
T d1wika_          21 MKGNKQE-AKCGFSK-------QILEILNSTG--------VEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGL   84 (109)
T ss_dssp             ESSTTTC-CCSSTHH-------HHHHHHHHTC--------SCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEECH
T ss_pred             eCCCCCC-CCChHHH-------HHHHHHHhcC--------CCceEEEecccHHHHHHHHHhcCCCCCCeEEECCEEEcCH
Confidence            7888875 6677766       4445555544        7999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCchhhccCCCCC
Q psy15246        188 DIIKELQVANKLIPTLDQPPSS  209 (213)
Q Consensus       188 d~~~~~~~~~~l~~~~~~~~~~  209 (213)
                      |++.+|+++|+|.++|+.....
T Consensus        85 ddl~~l~~~G~L~~lL~~~~~~  106 (109)
T d1wika_          85 DIVKELKDNGELLPILKGESGP  106 (109)
T ss_dssp             HHHHHHHHHTCSHHHHHTCCSC
T ss_pred             HHHHHHHHCCCHHHHHHhcCCC
Confidence            9999999999999999887543

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=1.2e-18  Score=118.29  Aligned_cols=80  Identities=13%  Similarity=0.153  Sum_probs=68.1

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-   95 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-   95 (213)
                      .+...++.|+++||++|+++.|.+++++..++  ++.+..+|++++++++++|+|+++||+++  +|+.+  +.|..+. 
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~~--~~G~~~~~   87 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEF--GQGRMTLT   87 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCCHH
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHhCC--ceEEEEEecccchHHHhhcccccccEEEE--CCEEE--EecCCCHH
Confidence            45567888999999999999999999999887  79999999999999999999999999854  88765  3565544 


Q ss_pred             hHHHHHH
Q psy15246         96 SLDKKLQ  102 (213)
Q Consensus        96 ~l~~~i~  102 (213)
                      +|.++|+
T Consensus        88 ~l~~~le   94 (96)
T d1hyua4          88 EIVAKVD   94 (96)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            6777664

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.1e-18  Score=119.56  Aligned_cols=101  Identities=20%  Similarity=0.326  Sum_probs=76.4

Q ss_pred             CceEEeCC-chhhhhh--cCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCC----chhHHHhCC
Q psy15246          1 MSVVQISE-ELDVEKY--GKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAED----LPKLSLNYK   70 (213)
Q Consensus         1 M~v~~l~~-~~~~~~~--~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~----~~~l~~~~~   70 (213)
                      |+.+.+++ +.....+  +++++++|.|||+||++|+++.|.+   .++.+.+.  ++.+..+|.+.    +.+++++|+
T Consensus         2 ~~f~~i~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~   79 (117)
T d2fwha1           2 LNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTANDAQDVALLKHLN   79 (117)
T ss_dssp             CCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCCHHHHHHHHHTT
T ss_pred             CCceEecCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc--ceEEEecccccchhHHHHHHhhhe
Confidence            55666766 3333333  5688999999999999999999987   55666666  56777777643    557899999


Q ss_pred             CccccEEEEEe-CCCCcc--cccCCCch-hHHHHHHH
Q psy15246         71 VSAVPTFVILK-NLKPVD--RVEGADPE-SLDKKLQN  103 (213)
Q Consensus        71 I~~~Pti~~~~-~g~~~~--~~~g~~~~-~l~~~i~~  103 (213)
                      |.++||+++|+ +|+.+.  +..|..+. ++.++|++
T Consensus        80 v~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          80 VLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             CCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             hhhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            99999999995 787653  56786655 78888875

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=3.2e-19  Score=126.43  Aligned_cols=101  Identities=18%  Similarity=0.183  Sum_probs=80.9

Q ss_pred             ceEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-C-----cEEEEEEeCCCchhHHHhCC--Ccc
Q psy15246          2 SVVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-S-----QVVFARCIAEDLPKLSLNYK--VSA   73 (213)
Q Consensus         2 ~v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~-----~v~~~~vd~~~~~~l~~~~~--I~~   73 (213)
                      .+++||++++++.+.+++.++|.||+|||.+|..  |.|+++++.+.+ .     +|.++.+|++.++++|.+++  |++
T Consensus         5 ~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~   82 (122)
T d1g7ea_           5 GALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKES   82 (122)
T ss_dssp             SSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSS
T ss_pred             ceEECCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccC
Confidence            4788999888899999999999999999988864  788888888764 1     35555668888999999864  789


Q ss_pred             ccEEEEEeCCCCc--ccccCCCc-hhHHHHHHHH
Q psy15246         74 VPTFVILKNLKPV--DRVEGADP-ESLDKKLQNQ  104 (213)
Q Consensus        74 ~Pti~~~~~g~~~--~~~~g~~~-~~l~~~i~~~  104 (213)
                      +||+++|++|+..  ..+.|.+. ++|.+||++.
T Consensus        83 yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          83 YPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             CEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             CCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            9999999998533  24556554 4899999886

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.1e-17  Score=128.06  Aligned_cols=99  Identities=18%  Similarity=0.273  Sum_probs=80.4

Q ss_pred             eEEeCC-chhhhhh---cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246          3 VVQISE-ELDVEKY---GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus         3 v~~l~~-~~~~~~~---~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      |.+|++ +.+.+.+   .++..|||+||++||++|+.|.|.|++|+..|+  .+.|++||++..+ +..+|+|.++||++
T Consensus       101 v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~~~~-~~~~~~i~~lPtl~  177 (217)
T d2trcp_         101 VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNTG-AGDRFSSDVLPTLL  177 (217)
T ss_dssp             EEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHHT-CSTTSCGGGCSEEE
T ss_pred             EEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc--cceEEEEccccch-hHHhCCCCCCCeEE
Confidence            678876 4455554   335579999999999999999999999999999  7999999998764 66899999999999


Q ss_pred             EEeCCCCcccccCCCc--------hhHHHHHHHH
Q psy15246         79 ILKNLKPVDRVEGADP--------ESLDKKLQNQ  104 (213)
Q Consensus        79 ~~~~g~~~~~~~g~~~--------~~l~~~i~~~  104 (213)
                      +|++|+.+.++.|...        .+|..+|.++
T Consensus       178 ~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         178 VYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            9999998887766432        3466666554

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.65  E-value=1.2e-16  Score=110.01  Aligned_cols=46  Identities=24%  Similarity=0.442  Sum_probs=41.1

Q ss_pred             HHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhccCC
Q psy15246        161 VREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQP  206 (213)
Q Consensus       161 ~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~~  206 (213)
                      .+..+++.++++|+|||||+|++|||+|++.+|+++|+|.++|+..
T Consensus        56 ~~~~l~~~~g~~tvPqIfi~g~~IGG~~el~~l~~~G~L~~~L~~~  101 (105)
T d1ktea_          56 IQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQV  101 (105)
T ss_dssp             HHHHHHHHHSCCCSCEEEETTEEEESHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHhhccCCCcCcEEEECCEEEecHHHHHHHHHCCCHHHHHHHc
Confidence            4456677789999999999999999999999999999999999754

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.6e-15  Score=108.86  Aligned_cols=94  Identities=15%  Similarity=0.206  Sum_probs=70.2

Q ss_pred             hhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC---------------------CCchhHHHhC
Q psy15246         11 DVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA---------------------EDLPKLSLNY   69 (213)
Q Consensus        11 ~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~---------------------~~~~~l~~~~   69 (213)
                      ..+.+.++++++|+|||+||++|++..|.++++.+..-  .+..+.++.                     +.+..+++.|
T Consensus        13 ~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~--~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   90 (136)
T d1z5ye1          13 QADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGI--RVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDL   90 (136)
T ss_dssp             CHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTTC--CEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHH
T ss_pred             cHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhhhh--hhcccccccchhhhHHHHHHcCCccceeecccchhHHHhc
Confidence            34455689999999999999999999999999876432  333333332                     2344688999


Q ss_pred             CCccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         70 KVSAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        70 ~I~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      +|.++|+++++. +|+.+.+..|.... ++.+.|++.++
T Consensus        91 ~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~  129 (136)
T d1z5ye1          91 GVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  129 (136)
T ss_dssp             TCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             ccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHH
Confidence            999999998885 88888888887654 56666666553

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.57  E-value=1.7e-15  Score=99.45  Aligned_cols=57  Identities=28%  Similarity=0.439  Sum_probs=54.8

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHHHHHcCCchhhcc
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKELQVANKLIPTLD  204 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~  204 (213)
                      ++|..+|++.+++.++.+.+.+|++|+|||||+|++|||+|++.+|+++|+|.++|+
T Consensus        26 i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i~~~~IGG~~el~~l~~~g~L~~lLk   82 (82)
T d1fova_          26 VSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLLK   82 (82)
T ss_dssp             CCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTCSHHHHC
T ss_pred             CCeEEEeccchHHHHHHHHHHhCCCCCCeEEECCEEEecHHHHHHHHHcCCHHHHhC
Confidence            899999999999999999999999999999999999999999999999999999985

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.57  E-value=8.3e-15  Score=105.75  Aligned_cols=91  Identities=15%  Similarity=0.299  Sum_probs=74.5

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------------CchhHH
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------------DLPKLS   66 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~~l~   66 (213)
                      ..++++++|.|||+||++|++..|.+.++.++++..++.++.|..+                            .+.+++
T Consensus        20 ~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   99 (143)
T d2fy6a1          20 LKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIA   99 (143)
T ss_dssp             CCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHH
T ss_pred             HhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHH
Confidence            3678999999999999999999999999998887545776666532                            244689


Q ss_pred             HhCCCccccEEEEEe-CCCCcccccCCCch-hHHHHHHHHh
Q psy15246         67 LNYKVSAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        67 ~~~~I~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      +.|++.++|+++++. +|+.+.+..|.... ++.++|++..
T Consensus       100 ~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1         100 QSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             HHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             HHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence            999999999999994 88888888887665 6888887653

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=2.5e-14  Score=102.06  Aligned_cols=85  Identities=20%  Similarity=0.372  Sum_probs=67.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-----------------------CchhHHHhCCCcc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-----------------------DLPKLSLNYKVSA   73 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-----------------------~~~~l~~~~~I~~   73 (213)
                      ++++++|.|||+||++|++..|.+.++.+++++  +.++.|+..                       .+.++.++|++.+
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~  101 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE--VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ  101 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc--cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCc
Confidence            689999999999999999999999999999984  555555432                       3457899999999


Q ss_pred             ccEEEEEe-CCCCcccccCCCch-hHHHHHHHH
Q psy15246         74 VPTFVILK-NLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        74 ~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                      +|++++++ +|+ +.+..|.... +|.+.|+++
T Consensus       102 ~P~~~iiD~~G~-i~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         102 QPAYAFVDPHGN-VDVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             SSEEEEECTTCC-EEEEESCCCHHHHHHHHHHH
T ss_pred             cCeEEEECCCCe-EEEEECCCCHHHHHHHHHhh
Confidence            99999996 666 4445565444 788888765

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=8e-15  Score=98.41  Aligned_cols=58  Identities=22%  Similarity=0.353  Sum_probs=54.5

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCC--CcccceEeCCeEeehHHHHHHHHHcCCchhhccC
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNW--PTYPQVYVNTELIGGLDIIKELQVANKLIPTLDQ  205 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~--pt~p~i~i~g~~~gg~d~~~~~~~~~~l~~~~~~  205 (213)
                      ++|.++|+..+.+.++.+.+++++  +|+|||||+|+||||+|++.+++++|+|.++|+.
T Consensus        33 I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg~del~~~~e~g~L~~~lk~   92 (93)
T d1t1va_          33 IQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAVEQDTLQEFLKL   92 (93)
T ss_dssp             CCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHHHHHHHTTCHHHHTTC
T ss_pred             CceEEEEecCchhHHHHHHHhccCCCceeEEEEECCEEEecHHHHHHHHHCCCHHHHhcc
Confidence            899999999999999999988865  6999999999999999999999999999999974

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.51  E-value=2.9e-14  Score=103.07  Aligned_cols=88  Identities=23%  Similarity=0.363  Sum_probs=69.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC---------------------CCchhHHHhCCCcccc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA---------------------EDLPKLSLNYKVSAVP   75 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~---------------------~~~~~l~~~~~I~~~P   75 (213)
                      ++++++|+|||+||++|+...|.+.++.+.++. .+..+.++.                     +.+..+.+.|+|.++|
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  108 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF-QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP  108 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTS-EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCc-eeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccc
Confidence            679999999999999999999999999877663 333333331                     2355789999999999


Q ss_pred             EEEEEe-CCCCcccccCCCch-hHHHHHHHHh
Q psy15246         76 TFVILK-NLKPVDRVEGADPE-SLDKKLQNQA  105 (213)
Q Consensus        76 ti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~  105 (213)
                      |++++. +|+.+.+..|.... ++.+.|++.+
T Consensus       109 ~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         109 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             EEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             eEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            999886 88988888887665 6777777665

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=6.3e-14  Score=101.18  Aligned_cols=89  Identities=15%  Similarity=0.219  Sum_probs=72.9

Q ss_pred             hhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------------CchhHH
Q psy15246         14 KYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------------DLPKLS   66 (213)
Q Consensus        14 ~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------------~~~~l~   66 (213)
                      ...++++++|+||++||++|++..|.++++.+++++ ++.++.|+.+                           ....++
T Consensus        25 ~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~  103 (143)
T d2b5xa1          25 QLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALT  103 (143)
T ss_dssp             HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHH
T ss_pred             HHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccchhhhhhHHHhhccCccccccCccchH
Confidence            346789999999999999999999999999999986 6777777642                           233478


Q ss_pred             HhCCCccccEEEEEe-CCCCcccccCCCch-hHHHHHHH
Q psy15246         67 LNYKVSAVPTFVILK-NLKPVDRVEGADPE-SLDKKLQN  103 (213)
Q Consensus        67 ~~~~I~~~Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~  103 (213)
                      +.|++.++|+++++. +|+.+.+..|.... ++.+.|++
T Consensus       104 ~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         104 DAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             HHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             HHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            899999999999885 88888788887765 67777765

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=1.2e-13  Score=98.66  Aligned_cols=85  Identities=18%  Similarity=0.330  Sum_probs=66.6

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------CchhHHHhCCCccc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------DLPKLSLNYKVSAV   74 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------~~~~l~~~~~I~~~   74 (213)
                      .+++++|.|||+||++|++..|.++++.++++  ++.++.|+.+                      ....++++|+|+++
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~  100 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQ  100 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhc--cccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcC
Confidence            58999999999999999999999999999887  5777777754                      34568899999999


Q ss_pred             cEEEEEe-CCCCc--ccccCCCch-hHHHHHHH
Q psy15246         75 PTFVILK-NLKPV--DRVEGADPE-SLDKKLQN  103 (213)
Q Consensus        75 Pti~~~~-~g~~~--~~~~g~~~~-~l~~~i~~  103 (213)
                      |++++++ +|+..  .+..|.... +|.+.|.+
T Consensus       101 P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         101 PAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             SEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             CEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            9999996 66532  233444333 67777654

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.42  E-value=4.4e-13  Score=96.93  Aligned_cols=70  Identities=16%  Similarity=0.229  Sum_probs=57.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCc------------------------hhHHHhCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDL------------------------PKLSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~I   71 (213)
                      ++++++|+|||+||++|++..|.++++.+++++ .++.++.|+.+..                        ..+++.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            689999999999999999999999999998875 3587888876532                        136788999


Q ss_pred             ccccEEEEEe-C-CCCc
Q psy15246         72 SAVPTFVILK-N-LKPV   86 (213)
Q Consensus        72 ~~~Pti~~~~-~-g~~~   86 (213)
                      .++||++++. + |+.+
T Consensus       107 ~~iPt~~lid~~~G~vi  123 (144)
T d1i5ga_         107 KSIPTLVGVEADSGNII  123 (144)
T ss_dssp             CSSSEEEEEETTTCCEE
T ss_pred             CCcCEEEEEeCCCCEEE
Confidence            9999999997 4 5544

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=1.1e-12  Score=98.83  Aligned_cols=89  Identities=10%  Similarity=0.129  Sum_probs=70.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC-----------------------------CCchhHHH
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA-----------------------------EDLPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~-----------------------------~~~~~l~~   67 (213)
                      .+++++|.|||+||++|++..|.+.+++++|++ ++.++.|+.                             |...++++
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~  109 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAK  109 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccc-cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhcc
Confidence            579999999999999999999999999999987 788888863                             23456899


Q ss_pred             hCCCccccEEEEEe-CCCCcccccCC----------CchhHHHHHHHHhcc
Q psy15246         68 NYKVSAVPTFVILK-NLKPVDRVEGA----------DPESLDKKLQNQAST  107 (213)
Q Consensus        68 ~~~I~~~Pti~~~~-~g~~~~~~~g~----------~~~~l~~~i~~~~~~  107 (213)
                      +|++.++|++++++ +|+.+ +.+..          ...+|.+.|++.++.
T Consensus       110 ~~~v~~~P~~~liD~~G~i~-y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g  159 (187)
T d2cvba1         110 AYRALRTPEVFLFDERRLLR-YHGRVNDNPKDPSKVQSHDLEAAIEALLRG  159 (187)
T ss_dssp             HTTCCEESEEEEECTTCBEE-EEECSSSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred             cccccceeeEEEEcCCCeEE-EEeeecCCCCCCCCCCHHHHHHHHHHHHcC
Confidence            99999999999997 55543 22211          122599999999865

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.8e-13  Score=99.28  Aligned_cols=90  Identities=12%  Similarity=0.136  Sum_probs=72.8

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHH---HHHHHHcCCCcEEEEEEeCCCc--hhHHHhCCCccccEEEEEe--CCCCccc
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLF---DEMSKQSKYSQVVFARCIAEDL--PKLSLNYKVSAVPTFVILK--NLKPVDR   88 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~---~~l~~~~~~~~v~~~~vd~~~~--~~l~~~~~I~~~Pti~~~~--~g~~~~~   88 (213)
                      .++|+++|+|+++||++|+.|....   +++.+.+.. ++.++.+|.+..  ..++++|+|.++||++++.  .|+.+..
T Consensus        40 ~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~-~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~  118 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVE  118 (147)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             HcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh-heeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEecc
Confidence            6789999999999999999998744   445555543 788999998764  7899999999999999996  5788777


Q ss_pred             ccCCCchhHHHHHHHHhc
Q psy15246         89 VEGADPESLDKKLQNQAS  106 (213)
Q Consensus        89 ~~g~~~~~l~~~i~~~~~  106 (213)
                      ..+..++++.+.|++.+.
T Consensus       119 ~~~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1         119 WHQLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             ESSCCHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHh
Confidence            777776677777777764

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=9.4e-14  Score=94.32  Aligned_cols=85  Identities=12%  Similarity=0.173  Sum_probs=68.9

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCc
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADP   94 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~   94 (213)
                      .++.-++|+.|+++||++|+++.+.++++...+.   ..++.+|.++++++.++|+++ +|++++  +|+.+. ....+.
T Consensus        12 ~~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~~-~g~~d~   84 (100)
T d1wjka_          12 SNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI---LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFLM-MHRVNT   84 (100)
T ss_dssp             SCCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE---EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEEE-ESSCCH
T ss_pred             cCCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc---eEEEecccccCHHHHHHhccc-CCceee--cCceEE-eCCCCH
Confidence            3566778999999999999999999999987766   567889999999999999998 998754  776553 234555


Q ss_pred             hhHHHHHHHHhc
Q psy15246         95 ESLDKKLQNQAS  106 (213)
Q Consensus        95 ~~l~~~i~~~~~  106 (213)
                      ++|+++|++..+
T Consensus        85 ~~L~~~L~~l~~   96 (100)
T d1wjka_          85 SKLEKQLRKLSG   96 (100)
T ss_dssp             HHHHHHHHSSSC
T ss_pred             HHHHHHHHHHhc
Confidence            689999987653

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.41  E-value=4.2e-13  Score=96.92  Aligned_cols=71  Identities=15%  Similarity=0.349  Sum_probs=58.3

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCc------------------------hhHHHhCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDL------------------------PKLSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~I   71 (213)
                      ++++++|+|||+||++|++..|.++++.+++.. .++.++.|+.+..                        .++.+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            589999999999999999999999999998853 3688888876522                        236789999


Q ss_pred             ccccEEEEEe-C-CCCcc
Q psy15246         72 SAVPTFVILK-N-LKPVD   87 (213)
Q Consensus        72 ~~~Pti~~~~-~-g~~~~   87 (213)
                      +++||+++++ + |+.+.
T Consensus       107 ~~~Pt~~lID~~~G~Ii~  124 (144)
T d1o73a_         107 ESIPTLITINADTGAIIG  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CcCCEEEEEECCCCEEEe
Confidence            9999999997 4 55443

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.39  E-value=1e-12  Score=93.93  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=70.9

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------chhHHHhCCCccc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------LPKLSLNYKVSAV   74 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~I~~~   74 (213)
                      .+++++|.||++||++|+...+.+.++.+.+.+.++.++.++.++                      ...+++.|++.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            678999999999999999999999999999886568888887542                      3457899999999


Q ss_pred             cEEEEEe-CCCCcccccCCCch-hHHHHHH
Q psy15246         75 PTFVILK-NLKPVDRVEGADPE-SLDKKLQ  102 (213)
Q Consensus        75 Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~  102 (213)
                      |++++++ +|+.+.++.|.... .+.+.++
T Consensus       104 P~~~liD~~G~i~~~~~G~~~~~~~~~~l~  133 (137)
T d1st9a_         104 PTTFLINPEGKVVKVVTGTMTESMIHDYMN  133 (137)
T ss_dssp             CEEEEECTTSEEEEEEESCCCHHHHHHHHH
T ss_pred             ceEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence            9999996 78888888887665 5655543

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.3e-13  Score=97.24  Aligned_cols=77  Identities=18%  Similarity=0.226  Sum_probs=59.9

Q ss_pred             hcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcC-CCcEEEEEEeCCCchhHHHhC-CCccccEEEEEe-CCCCcccccC
Q psy15246         15 YGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSK-YSQVVFARCIAEDLPKLSLNY-KVSAVPTFVILK-NLKPVDRVEG   91 (213)
Q Consensus        15 ~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~-~~~v~~~~vd~~~~~~l~~~~-~I~~~Pti~~~~-~g~~~~~~~g   91 (213)
                      ..++++++|.|||+||++|+++.|.+.+..+..+ ..++.++.||.++..+++..+ ...++||++++. +|+.+....|
T Consensus        22 ~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~g  101 (135)
T d1sena_          22 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIIN  101 (135)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCCC
T ss_pred             HHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEEEEecC
Confidence            4779999999999999999999998865443221 127889999999887777654 455789999996 7887766655

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.31  E-value=5.6e-12  Score=90.60  Aligned_cols=70  Identities=19%  Similarity=0.321  Sum_probs=57.8

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCC------------------------chhHHHhCCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAED------------------------LPKLSLNYKV   71 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~------------------------~~~l~~~~~I   71 (213)
                      ++++++|+|||+||++|+...|.+.++.+++.. .++.++.++.+.                        ...+.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            689999999999999999999999999999864 257777777552                        1357889999


Q ss_pred             ccccEEEEEe-C-CCCc
Q psy15246         72 SAVPTFVILK-N-LKPV   86 (213)
Q Consensus        72 ~~~Pti~~~~-~-g~~~   86 (213)
                      +++||+++++ + |+.+
T Consensus       105 ~~~Pt~~liD~~~G~Vi  121 (144)
T d1o8xa_         105 ESIPTLIGVDADSGDVV  121 (144)
T ss_dssp             CSSSEEEEEETTTCCEE
T ss_pred             CcCCEEEEEeCCCCEEE
Confidence            9999999997 4 4543

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.1e-12  Score=84.89  Aligned_cols=37  Identities=14%  Similarity=0.174  Sum_probs=28.9

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      +|.|..++|++|.+.+..++++...+.  .+.+..+|.+
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~--~i~~~~~~~~   39 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCC--CceEEEEecC
Confidence            567889999999999999999888887  4666555433

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.22  E-value=3.2e-11  Score=89.60  Aligned_cols=89  Identities=17%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--c--------------------------hhHHHh
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--L--------------------------PKLSLN   68 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--~--------------------------~~l~~~   68 (213)
                      ++++++|.||++||++|+...+.+.++.+.+.+.++.++.|..+.  .                          ..+...
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            679999999999999999999999999998876456666665431  1                          012334


Q ss_pred             CCCccccEEEEEe-CCCCcccccCC---CchhHHHHHHHHh
Q psy15246         69 YKVSAVPTFVILK-NLKPVDRVEGA---DPESLDKKLQNQA  105 (213)
Q Consensus        69 ~~I~~~Pti~~~~-~g~~~~~~~g~---~~~~l~~~i~~~~  105 (213)
                      +++.++|++++++ +|+.+.++.|.   +.+++.+.|+.++
T Consensus       135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence            5788899999886 78887777774   3347888888775

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.12  E-value=5.6e-11  Score=87.51  Aligned_cols=73  Identities=11%  Similarity=0.120  Sum_probs=60.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhC---CCccccEEEEEeCC-CCcccccC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNY---KVSAVPTFVILKNL-KPVDRVEG   91 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~---~I~~~Pti~~~~~g-~~~~~~~g   91 (213)
                      .++..++.||++||++|++..|.++++++.++  ++.+..|+.+.+++..++|   +...+|+++++.+. .....+.+
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~  129 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVE  129 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEES
T ss_pred             cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC--CCcEEEEECccCHHHHHHHHHhccccccceeecCccchhcccccc
Confidence            57788999999999999999999999999998  6888889999999999998   55678888887643 44444444

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.99  E-value=7.4e-11  Score=77.57  Aligned_cols=47  Identities=28%  Similarity=0.428  Sum_probs=34.9

Q ss_pred             CCceEEeccCC-----HHHHHHHH-----hhcCCCcccceEe-CCeEeehHHHHHHHH
Q psy15246        148 VPYDTFDILQD-----QEVREGLK-----IYSNWPTYPQVYV-NTELIGGLDIIKELQ  194 (213)
Q Consensus       148 v~~~~~d~~~~-----~~~~~~l~-----~~~~~pt~p~i~i-~g~~~gg~d~~~~~~  194 (213)
                      ++|..+++..+     ...++++.     ..++++|+||||| ||++|||+|+|+++.
T Consensus        29 i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~del~e~~   86 (87)
T d1abaa_          29 QPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQLREYF   86 (87)
T ss_dssp             CCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHHHHHHT
T ss_pred             CCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECHHHHHHHh
Confidence            78888887643     33333332     2367899999999 699999999999874

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.89  E-value=8.2e-10  Score=70.15  Aligned_cols=44  Identities=23%  Similarity=0.452  Sum_probs=37.9

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehHHHHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGLDIIKE  192 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~d~~~~  192 (213)
                      ++|..+|++.+.+. +.+.+.++++|+|||||+|++|||+|+|.+
T Consensus        30 i~~~~~~v~~~~~~-~~~~~~~~~~tvP~i~i~g~~IGG~~el~~   73 (74)
T d1nm3a1          30 LSFEEIILGHDATI-VSVRAVSGRTTVPQVFIGGKHIGGSDDLEK   73 (74)
T ss_dssp             CCCEEEETTTTCCH-HHHHHHTCCSSSCEEEETTEEEESHHHHHH
T ss_pred             CCeEEEEccCcHHH-HHHHHHhCCccCCEEEECCEEEEChHHHhh
Confidence            78999999887554 455668899999999999999999999875

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.80  E-value=3.1e-09  Score=67.37  Aligned_cols=46  Identities=35%  Similarity=0.483  Sum_probs=40.7

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehH--HHHHHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL--DIIKELQ  194 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~--d~~~~~~  194 (213)
                      ++|..+|++.+++.++.++. .+.+|+||++++|++|||+  |.+++|.
T Consensus        26 i~~~~~~i~~~~~~~~~~~~-~g~~tvP~i~i~g~~igGf~~d~l~~L~   73 (74)
T d1r7ha_          26 LAYNTVDISLDDEARDYVMA-LGYVQAPVVEVDGEHWSGFRPERIKQLQ   73 (74)
T ss_dssp             CCCEEEETTTCHHHHHHHHH-TTCBCCCEEEETTEEEESCCHHHHHHHH
T ss_pred             CceEEEEccCCHHHHHHHHH-hCCCCcCEEEECCEEEeCCCHhHHHHhh
Confidence            89999999999999888875 4889999999999999997  6777765

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.70  E-value=3.9e-08  Score=71.09  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=64.9

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCc-
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVS-   72 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~-   72 (213)
                      .++++++|.|| +.||++|....+.+.++.+.+...++.++.+..+                     .+.+++++|++. 
T Consensus        28 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  107 (160)
T d2cx4a1          28 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH  107 (160)
T ss_dssp             TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEE
T ss_pred             hCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCccc
Confidence            46889999999 9999999999999999988888656777777643                     345688899883 


Q ss_pred             ---------cccEEEEEe-CCCCcccccCC------CchhHHHHHHHHhc
Q psy15246         73 ---------AVPTFVILK-NLKPVDRVEGA------DPESLDKKLQNQAS  106 (213)
Q Consensus        73 ---------~~Pti~~~~-~g~~~~~~~g~------~~~~l~~~i~~~~~  106 (213)
                               ..|++.++. +|+......+.      +.+++.+.+++.++
T Consensus       108 ~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1         108 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             EEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             cccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence                     467777775 77655433321      12356666666553

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=1e-07  Score=68.81  Aligned_cols=78  Identities=12%  Similarity=0.056  Sum_probs=59.0

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------CchhHHHhCCCcc
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------DLPKLSLNYKVSA   73 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~I~~   73 (213)
                      .+++.+++.|| +.||+.|....+.+.+...+++. .+.++.|..+                     .+.+++++||+..
T Consensus        31 ~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~  109 (156)
T d2a4va1          31 ENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKK  109 (156)
T ss_dssp             HHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBS
T ss_pred             CCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCc
Confidence            34566666677 89999999999999999999986 5666677643                     4567889999887


Q ss_pred             cc------EEEEEeCCCCcccccCCCc
Q psy15246         74 VP------TFVILKNLKPVDRVEGADP   94 (213)
Q Consensus        74 ~P------ti~~~~~g~~~~~~~g~~~   94 (213)
                      .|      ++++..+|+...++.+..+
T Consensus       110 ~~~~~~~r~~~i~~dg~i~~~~~~~~~  136 (156)
T d2a4va1         110 TPLSGSIRSHFIFVDGKLKFKRVKISP  136 (156)
T ss_dssp             SSSSCBCCEEEEEETTEEEEEEESCCH
T ss_pred             cccCCeeEEEEEEECCeEEEEEEEeCC
Confidence            76      4556678987776666554

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=2e-08  Score=63.84  Aligned_cols=47  Identities=19%  Similarity=0.364  Sum_probs=40.8

Q ss_pred             CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehH--HHHHHHHH
Q psy15246        148 VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL--DIIKELQV  195 (213)
Q Consensus       148 v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~--d~~~~~~~  195 (213)
                      ++|..+|++.+++..+.++. .|.+|+|+|+|+|+++||+  |.+++|++
T Consensus        26 i~y~~~~i~~~~~~~~~~~~-~g~~tvP~i~i~~~~i~Gf~~d~i~~L~~   74 (76)
T d1h75a_          26 FDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFRPDMINRLHP   74 (76)
T ss_dssp             CCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCCHHHHGGGSC
T ss_pred             ceeEEEeecCCHHHHHHHHh-cCCCCCCEEEECCEEEECCCHHHHHHHhc
Confidence            89999999999998888874 6899999999999999997  77766543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=8.8e-08  Score=69.21  Aligned_cols=83  Identities=18%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC------------------------------------
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA------------------------------------   59 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~------------------------------------   59 (213)
                      .+.+.+++.|+-+.||+|+++.|.++++.+.    ++.+.....                                    
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~----~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   99 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA   99 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHHHHHHhhcc----CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccc
Confidence            4567899999999999999999999988653    333333321                                    


Q ss_pred             --------CCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         60 --------EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        60 --------~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                              ..+..+++++||+|+||++ +.+|+.   ..|..+. .|.++|++...
T Consensus       100 ~~~~~~~i~~~~~la~~lgv~GTPt~~-~~nG~~---v~G~~~~e~l~~~i~~~~k  151 (156)
T d1eeja1         100 PASCDVDIADHYALGVQLGVSGTPAVV-LSNGTL---VPGYQPPKEMKEFLDEHQK  151 (156)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEEE-CTTSCE---EESCCCHHHHHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHHcCCcCCCEEE-EeCCeE---ecCCCCHHHHHHHHHHHHH
Confidence                    1345688999999999964 467864   4587665 79999988753

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=2.4e-07  Score=67.63  Aligned_cols=70  Identities=19%  Similarity=0.152  Sum_probs=57.1

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-------------------------CchhHHHhCC
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-------------------------DLPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~~~   70 (213)
                      .++.+++.|| +.||+.|....+.+.++.+++...++.++.|..+                         .+.+++++||
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            5788999998 9999999999999999999998656888888654                         3456889999


Q ss_pred             C-----ccccEEEEEe-CCCCc
Q psy15246         71 V-----SAVPTFVILK-NLKPV   86 (213)
Q Consensus        71 I-----~~~Pti~~~~-~g~~~   86 (213)
                      |     ...|+.+++. +|+..
T Consensus       123 v~~~~~~~~r~~fvID~~G~I~  144 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNEIQ  144 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEE
T ss_pred             CCccCCccceeEEEEcCCCEEE
Confidence            8     6788888886 67653

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.44  E-value=2.6e-07  Score=66.19  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=60.6

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeC------------------------------------
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIA------------------------------------   59 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~------------------------------------   59 (213)
                      .+.+.+++.|+-+.||+|+++.+.++.+.+...  .+.+.....                                    
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~  101 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGI--TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  101 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHHTTE--EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCCEEEEEEECCCCHHHHHHhHHHHHHhccCc--eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccch
Confidence            456778999999999999999999999876533  344333211                                    


Q ss_pred             ------CCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHHHHHHH
Q psy15246         60 ------EDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDKKLQNQ  104 (213)
Q Consensus        60 ------~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~~i~~~  104 (213)
                            ..+.++++++||+|+||+++ .||+.+   .|..+. +|.+.|++.
T Consensus       102 ~~~~~i~~~~~la~~lGv~GTPt~~~-~nG~~i---~G~~~~~~l~~~l~~~  149 (150)
T d1t3ba1         102 KTPNIVKKHYELGIQFGVRGTPSIVT-STGELI---GGYLKPADLLRALEET  149 (150)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTSCCC---CSCCCHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHHhcCcCCCCEEEE-cCCcEe---cCCCCHHHHHHHHHhh
Confidence                  12456889999999999764 577644   576665 688888763

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.42  E-value=2.5e-07  Score=67.45  Aligned_cols=87  Identities=21%  Similarity=0.272  Sum_probs=62.2

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~~   67 (213)
                      .++++||.|| +.||+.|....+.+.++.+++...++.++.|+.+.                            +..+++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence            6789999999 99999999999999999999886678888887642                            344778


Q ss_pred             hCCCc------cccEEEEEe-CCCCccccc-----CCCchhHHHHHHH
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDRVE-----GADPESLDKKLQN  103 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~~~-----g~~~~~l~~~i~~  103 (213)
                      .|++.      .+|++.++. +|+......     +.+.+++.+.|+.
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            88873      467776676 776543322     2333455555544

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.39  E-value=9.2e-07  Score=64.46  Aligned_cols=41  Identities=12%  Similarity=0.354  Sum_probs=34.0

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEE
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARC   57 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~v   57 (213)
                      .+.++.||.|....||+|+++.+.+..+.+++.+ .+.+...
T Consensus        16 ~~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~-~~~~~~~   56 (181)
T d1beda_          16 ASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE-GAKFQKN   56 (181)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TCEEEEE
T ss_pred             CCCCCEEEEEECCCCccchhhhhhhhhHhhhccc-ccceeEE
Confidence            3577899999999999999999999999998875 4444444

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=1.2e-06  Score=63.80  Aligned_cols=80  Identities=14%  Similarity=0.189  Sum_probs=59.1

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC------------------------------------
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE------------------------------------   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~------------------------------------   60 (213)
                      ..+.+|+.|+.+.||+|+++.+.++++.+..   ++.+..++..                                    
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~  111 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLN  111 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCC
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccc
Confidence            3456789999999999999999999987653   4666666521                                    


Q ss_pred             --------------CchhHHHhCCCccccEEEEEeCCCCcccccCCCch-hHHH
Q psy15246         61 --------------DLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-SLDK   99 (213)
Q Consensus        61 --------------~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~l~~   99 (213)
                                    .+.++++++||+++||+++...+.......|..+. .|.+
T Consensus       112 ~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~  165 (169)
T d1v58a1         112 VPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNI  165 (169)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHH
Confidence                          23457788999999999887755455667887776 3443

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1e-06  Score=65.21  Aligned_cols=45  Identities=11%  Similarity=0.056  Sum_probs=39.3

Q ss_pred             cCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         16 GKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        16 ~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      -+++++||.++|+||+.|.+..+.++++.++|.+.++.++.+-|+
T Consensus        22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~n   66 (184)
T d2f8aa1          22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   66 (184)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             cCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecc
Confidence            378999999999999999998999999999998656888877665

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.31  E-value=9.7e-07  Score=55.33  Aligned_cols=67  Identities=9%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh---HHHhCCCccccEEEEEeCCCCcccccCCCchhHH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK---LSLNYKVSAVPTFVILKNLKPVDRVEGADPESLD   98 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~---l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~   98 (213)
                      ++.|..+||++|.+.+..+++.       ++.+..+|++++++   ..+.++.+++|++.  .+|+   ...|++++.|.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~-------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~--i~g~---~igGf~~d~l~   70 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA-------GLAYNTVDISLDDEARDYVMALGYVQAPVVE--VDGE---HWSGFRPERIK   70 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEE--ETTE---EEESCCHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc-------CCceEEEEccCCHHHHHHHHHhCCCCcCEEE--ECCE---EEeCCCHhHHH
Confidence            5678999999999999888763       56677788887654   44677999999874  4675   45688876665


Q ss_pred             HH
Q psy15246         99 KK  100 (213)
Q Consensus        99 ~~  100 (213)
                      +.
T Consensus        71 ~L   72 (74)
T d1r7ha_          71 QL   72 (74)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.30  E-value=8e-07  Score=64.72  Aligned_cols=87  Identities=20%  Similarity=0.137  Sum_probs=60.6

Q ss_pred             CCCeEEEEEEcC-CCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-------------------------CchhHHHhCC
Q psy15246         17 KDKTAVVHFYAD-WSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-------------------------DLPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~a~-wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~~~   70 (213)
                      .++.+||.||.. ||+.|....+.+.++.+++...++.++.|..+                         .+.+++++||
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~yg  109 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhC
Confidence            478899999965 99999999999999999997556888888765                         2345788898


Q ss_pred             Cc------cccEEEEEe-CCCCccccc-----CCCchhHHHHHHH
Q psy15246         71 VS------AVPTFVILK-NLKPVDRVE-----GADPESLDKKLQN  103 (213)
Q Consensus        71 I~------~~Pti~~~~-~g~~~~~~~-----g~~~~~l~~~i~~  103 (213)
                      +.      ..|+..++. +|+......     |.+..++.+.|+.
T Consensus       110 v~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lka  154 (166)
T d1we0a1         110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKA  154 (166)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred             CCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHh
Confidence            85      456666665 665433222     2233455555543

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.30  E-value=4e-06  Score=57.40  Aligned_cols=86  Identities=15%  Similarity=0.262  Sum_probs=65.6

Q ss_pred             CCeEEEEEEc--CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC--chhHHHhCCCccccEEEEEeCCCCc-ccccC-
Q psy15246         18 DKTAVVHFYA--DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED--LPKLSLNYKVSAVPTFVILKNLKPV-DRVEG-   91 (213)
Q Consensus        18 ~~~~vV~F~a--~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~--~~~l~~~~~I~~~Pti~~~~~g~~~-~~~~g-   91 (213)
                      .++|-+.++.  +.|+.|..+...++++++.-.  ++.+...|.+.  +.+++++|+|...|++.++.+|+.. -++.| 
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSd--ki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~Gi   98 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSELTD--KLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGL   98 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCT--TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESC
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhhCC--CeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEec
Confidence            4555444444  579999999999999988765  78877777654  6789999999999999999988653 25556 


Q ss_pred             CCchhHHHHHHHHh
Q psy15246         92 ADPESLDKKLQNQA  105 (213)
Q Consensus        92 ~~~~~l~~~i~~~~  105 (213)
                      +...++..+|...+
T Consensus        99 P~GhEf~SlilaIl  112 (119)
T d1a8la1          99 PAGHEFAAFLEDIV  112 (119)
T ss_dssp             CCTTHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHH
Confidence            44458888887765

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.28  E-value=3.6e-06  Score=58.72  Aligned_cols=103  Identities=13%  Similarity=0.113  Sum_probs=80.4

Q ss_pred             eEEeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCC--ccccEEEEE
Q psy15246          3 VVQISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKV--SAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I--~~~Pti~~~   80 (213)
                      |.++|.++.....+.+++.++.|+.+. .....+...+.++|+++++ ++.|+.+|.+++....+.||+  ..+|.++++
T Consensus         8 v~e~~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~-ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i~   85 (133)
T d2djka1           8 IGEIGPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRG-VINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQ   85 (133)
T ss_dssp             SEECCHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTT-TSEEEEECTTTTGGGTTTTTCCSSSSSEEEEE
T ss_pred             eeccChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcC-ceEEEEEeHHHhHHHHHHhcCCcccCCcEEEE
Confidence            457888777777888899888888765 4578889999999999998 899999999999999999998  468999988


Q ss_pred             eCC-C-Ccccc-cC-CCchhHHHHHHHHhcc
Q psy15246         81 KNL-K-PVDRV-EG-ADPESLDKKLQNQAST  107 (213)
Q Consensus        81 ~~g-~-~~~~~-~g-~~~~~l~~~i~~~~~~  107 (213)
                      ... . ...+. .+ .+.+.|.+|+++.++.
T Consensus        86 ~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~G  116 (133)
T d2djka1          86 EVAKNQKFPFDQEKEITFEAIKAFVDDFVAG  116 (133)
T ss_dssp             CTTTCCBCCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred             EcCCCceecCCccccCCHHHHHHHHHHHHcC
Confidence            632 2 22221 22 3445799999998764

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.28  E-value=1.1e-07  Score=66.02  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=52.6

Q ss_pred             ccccCCCcccccchhhhhhhheeccCCCC-------CCCC---------------CCceEEeccCCHHHHHHHHhhcCCC
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNWPT-------YPQV---------------VPYDTFDILQDQEVREGLKIYSNWP  172 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apWP~-------~~~~---------------v~~~~~d~~~~~~~~~~l~~~~~~p  172 (213)
                      +..++.++|+.+......++|.||+||+.       |..+               +.++.+||+.+.++++.+. +.++|
T Consensus        13 V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~-I~~yP   91 (124)
T d1a8ya1          13 VINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLG-LTEED   91 (124)
T ss_dssp             CEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTT-CCSTT
T ss_pred             cEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccc-cccCC
Confidence            56788999984433344489999999964       2221               6799999999999988876 78899


Q ss_pred             cccceEeCCeEe
Q psy15246        173 TYPQVYVNTELI  184 (213)
Q Consensus       173 t~p~i~i~g~~~  184 (213)
                      |+ .+|.+|+.+
T Consensus        92 Ti-~~f~~g~~~  102 (124)
T d1a8ya1          92 SI-YVFKEDEVI  102 (124)
T ss_dssp             CE-EEEESSSEE
T ss_pred             cE-EEeccCccE
Confidence            98 888998654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.26  E-value=6.7e-08  Score=65.02  Aligned_cols=67  Identities=12%  Similarity=0.266  Sum_probs=52.1

Q ss_pred             cccCCCcccccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        116 THVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       116 ~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      ..++..+|+...+.+...+|.|||||        |.+.++       +.|+.+|++.++++++.++ ..++||+ .+|.+
T Consensus         3 i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~-V~~~Pt~-~~~~~   80 (105)
T d1nw2a_           3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFG-IMSIPTL-ILFKG   80 (105)
T ss_dssp             EEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTT-CCBSSEE-EEEET
T ss_pred             EEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCC-cceeeEE-EEEEC
Confidence            35677888854444556899999999        444444       7899999999999988776 7889999 78899


Q ss_pred             CeEe
Q psy15246        181 TELI  184 (213)
Q Consensus       181 g~~~  184 (213)
                      |+.+
T Consensus        81 G~~~   84 (105)
T d1nw2a_          81 GEPV   84 (105)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            9744

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.23  E-value=1.2e-07  Score=63.64  Aligned_cols=67  Identities=13%  Similarity=0.255  Sum_probs=50.9

Q ss_pred             ccCCCcccc-cchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        117 HVPYDTFDI-LQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       117 ~~~~~~f~~-l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      .++..+|+. +.+.+..++|.|||||        |.+.++       ..+..+|+..++++++.+. ..++||+ .+|.+
T Consensus         3 el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~-V~~~Pt~-~~~~~   80 (104)
T d1fb6a_           3 DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYN-IRSIPTV-LFFKN   80 (104)
T ss_dssp             ECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTT-CCSSSEE-EEEET
T ss_pred             ECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcc-eeeeeEE-EEEEc
Confidence            467788883 3344555899999999        444443       6788999999999988777 7899998 78899


Q ss_pred             CeEee
Q psy15246        181 TELIG  185 (213)
Q Consensus       181 g~~~g  185 (213)
                      |+.++
T Consensus        81 G~~v~   85 (104)
T d1fb6a_          81 GERKE   85 (104)
T ss_dssp             TEEEE
T ss_pred             CeEEE
Confidence            97443

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.21  E-value=4e-06  Score=64.34  Aligned_cols=89  Identities=11%  Similarity=0.039  Sum_probs=66.2

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC---------------------------CchhHHH
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE---------------------------DLPKLSL   67 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~---------------------------~~~~l~~   67 (213)
                      .+++.+|+.|| ++||+.|....+.+.++.+++...++.++.|.++                           .+.++++
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak  106 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVAR  106 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHH
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHH
Confidence            46788999999 9999999999999999988887556888877654                           3456899


Q ss_pred             hCCC-------ccccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246         68 NYKV-------SAVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ  104 (213)
Q Consensus        68 ~~~I-------~~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~  104 (213)
                      .||+       ...|++.++. +|+.....     .|++.+++.+.|+.+
T Consensus       107 ~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         107 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence            9998       4678888886 66542221     245555777777654

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1e-06  Score=55.53  Aligned_cols=64  Identities=9%  Similarity=0.196  Sum_probs=49.0

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH---HhCCCccccEEEEEeCCCCcccccCCCchhH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS---LNYKVSAVPTFVILKNLKPVDRVEGADPESL   97 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~---~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l   97 (213)
                      ++.|..+||++|.+.+..|++.       ++.+..+|++++++..   +..|.+++|++++  +|+   ...|++++.|
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~-------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~---~i~Gf~~d~i   69 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR-------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDL---SWSGFRPDMI   69 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTE---EEESCCHHHH
T ss_pred             EEEEeCCCCccHHHHHHHHHhc-------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCE---EEECCCHHHH
Confidence            5678999999999999888773       5778888998877543   4569999999865  554   3568877654

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.17  E-value=3.5e-06  Score=62.75  Aligned_cols=88  Identities=18%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------------CchhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------------DLPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~~l~~   67 (213)
                      .++.+|+.|| ++||+.|......+.++.+++...++.++.|..+                            .+.++++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            4789999999 9999999999999999999987657888888755                            3456899


Q ss_pred             hCCCc------cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ  104 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~  104 (213)
                      +||+.      .+|+..+++ +|+.....     .|...+++.+.|+.+
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  160 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHh
Confidence            99983      466666665 66543332     234445666666654

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.15  E-value=8.6e-08  Score=64.68  Aligned_cols=67  Identities=16%  Similarity=0.300  Sum_probs=50.0

Q ss_pred             ccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeC
Q psy15246        117 HVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVN  180 (213)
Q Consensus       117 ~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~  180 (213)
                      .++.++|+ .+.+....++|.|||||        |.+.++       +.++.+|++.++++++.+. ..++||+ .+|.+
T Consensus         5 ~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~-V~~~Pt~-~~~~~   82 (107)
T d1dbya_           5 AVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYG-IRSIPTI-MVFKG   82 (107)
T ss_dssp             EECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHT-CCSSCEE-EEESS
T ss_pred             EecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhc-ccceEEE-EEEEC
Confidence            34567776 34444555899999999        444333       7889999999999988777 7889999 68888


Q ss_pred             CeEee
Q psy15246        181 TELIG  185 (213)
Q Consensus       181 g~~~g  185 (213)
                      |+.++
T Consensus        83 G~~v~   87 (107)
T d1dbya_          83 GKKCE   87 (107)
T ss_dssp             SSEEE
T ss_pred             CeEEE
Confidence            87554

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=2.4e-07  Score=63.72  Aligned_cols=68  Identities=15%  Similarity=0.405  Sum_probs=52.5

Q ss_pred             CcccccCCCcccccchhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCcccc
Q psy15246        113 SNITHVPYDTFDILQDQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQ  176 (213)
Q Consensus       113 ~~~~~~~~~~f~~l~~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~  176 (213)
                      +.+..++.++|+.+.+.+..++|.||+||        |+|.++        +.++.+||..+.++++.+. ..++||+ .
T Consensus        10 s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~-v~~~Pti-~   87 (119)
T d2b5ea4          10 SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHN-IPGFPSL-K   87 (119)
T ss_dssp             SSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTT-CCSSSEE-E
T ss_pred             CccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhc-cccCCeE-E
Confidence            34677888999855444456899999999        555444        7889999999999988876 6788888 6


Q ss_pred             eEeCCe
Q psy15246        177 VYVNTE  182 (213)
Q Consensus       177 i~i~g~  182 (213)
                      +|.+|+
T Consensus        88 ~f~~g~   93 (119)
T d2b5ea4          88 IFKNSD   93 (119)
T ss_dssp             EEETTC
T ss_pred             EEECCE
Confidence            777875

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.11  E-value=2.3e-07  Score=62.61  Aligned_cols=68  Identities=10%  Similarity=0.232  Sum_probs=50.4

Q ss_pred             ccccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246        115 ITHVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      +..++..+|+ .+.+.+...+|.||+||        |.+.++       +.++.+|+++++++++.+. ..++||+ .+|
T Consensus         4 V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~-I~~~Pt~-~~~   81 (108)
T d1thxa_           4 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYK-VEGVPAL-RLV   81 (108)
T ss_dssp             EEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTT-CCSSSEE-EEE
T ss_pred             ceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhc-ccCCCEE-EEE
Confidence            4567788887 34444455889999999        334333       7889999999999988776 6778888 677


Q ss_pred             eCCeEe
Q psy15246        179 VNTELI  184 (213)
Q Consensus       179 i~g~~~  184 (213)
                      .+|+.+
T Consensus        82 ~~g~~v   87 (108)
T d1thxa_          82 KGEQIL   87 (108)
T ss_dssp             ETTEEE
T ss_pred             ECCEEE
Confidence            789743

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=8.2e-06  Score=58.06  Aligned_cols=71  Identities=10%  Similarity=0.007  Sum_probs=51.1

Q ss_pred             cCCCeEEEE-EEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-----------------------CchhHHHhCCC
Q psy15246         16 GKDKTAVVH-FYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-----------------------DLPKLSLNYKV   71 (213)
Q Consensus        16 ~~~~~~vV~-F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-----------------------~~~~l~~~~~I   71 (213)
                      ...+.+++. |++.||++|....+.+.++.+++...++.++.+..+                       .+.++++.|++
T Consensus        27 ~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv  106 (153)
T d1xvwa1          27 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGV  106 (153)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTC
T ss_pred             cCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhh
Confidence            334555554 458999999999999999999888667888888754                       23457888987


Q ss_pred             c------cccEEEEEe-CCCCc
Q psy15246         72 S------AVPTFVILK-NLKPV   86 (213)
Q Consensus        72 ~------~~Pti~~~~-~g~~~   86 (213)
                      .      ..|+++++. +|+..
T Consensus       107 ~~~~~g~~~r~tfvID~~G~I~  128 (153)
T d1xvwa1         107 FNEQAGIANRGTFVVDRSGIIR  128 (153)
T ss_dssp             EETTTTEECSEEEEECTTSBEE
T ss_pred             hhhccCceeeeEEEECCCCEEE
Confidence            5      235566664 77653

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=8.8e-06  Score=56.18  Aligned_cols=100  Identities=15%  Similarity=0.184  Sum_probs=77.2

Q ss_pred             EeCCchhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCc-cccEEEEEeCC
Q psy15246          5 QISEELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVS-AVPTFVILKNL   83 (213)
Q Consensus         5 ~l~~~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~-~~Pti~~~~~g   83 (213)
                      +|+.+.....++++.+.++.|+.+.- .-..+++.+.++|+++++ ++.|+.+|.++.....+.+|+. ..|.+++...-
T Consensus         4 ei~~~~~~~y~~~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkg-ki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~   81 (125)
T d2b5ea3           4 EIDGSVFAQYVESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRG-LMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMT   81 (125)
T ss_dssp             BCCHHHHHHHHHTTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTT-TCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETT
T ss_pred             ccCHHHHHHHHhcCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcC-eeEEEEEchHHhHHHHHHcCCCccCCcEEEEecc
Confidence            35666677777889999999998753 456789999999999998 8999999999999999999987 48999887633


Q ss_pred             CCcccc---------------cCCCchhHHHHHHHHhc
Q psy15246         84 KPVDRV---------------EGADPESLDKKLQNQAS  106 (213)
Q Consensus        84 ~~~~~~---------------~g~~~~~l~~~i~~~~~  106 (213)
                      ....+.               .-.+.+.|.+|+++.+.
T Consensus        82 ~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~  119 (125)
T d2b5ea3          82 EDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK  119 (125)
T ss_dssp             TTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred             cCcccccchhhhhhcccccccccCCHHHHHHHHHHHHc
Confidence            221111               12344579999999875

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.07  E-value=5e-06  Score=60.02  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=32.5

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEe
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCI   58 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd   58 (213)
                      ..+..|+.|....||+|+++.+.+.++.+++.+ ..+.+....
T Consensus        23 ~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (172)
T d1z6ma1          23 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKL   65 (172)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeecc
Confidence            345679999999999999999999998887763 235555444

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.03  E-value=3.8e-06  Score=61.19  Aligned_cols=71  Identities=17%  Similarity=0.227  Sum_probs=54.2

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHH
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLS   66 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~   66 (213)
                      ..++++++.|| +.||+.|....+.+++...++...++.++.|..+.                            ..+++
T Consensus        31 ~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~  110 (170)
T d1zofa1          31 LGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (170)
T ss_dssp             CCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             cCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHH
Confidence            34568999999 99999999999999998888875568888887542                            34678


Q ss_pred             HhCCCc-----cccEEEEEe-CCCCc
Q psy15246         67 LNYKVS-----AVPTFVILK-NLKPV   86 (213)
Q Consensus        67 ~~~~I~-----~~Pti~~~~-~g~~~   86 (213)
                      +.||+.     ..|+..++. +|+..
T Consensus       111 ~~ygv~~~~~~~~r~tfvID~~G~I~  136 (170)
T d1zofa1         111 RDYDVLFEEAIALRGAFLIDKNMKVR  136 (170)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEE
T ss_pred             HHcCCCccccceeEEEEEEcCCCeEE
Confidence            999984     567666665 66543

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=2e-07  Score=64.41  Aligned_cols=81  Identities=14%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             ccccCCCcccccchhhhhhhheeccCCC------CCCCC--------------CCceEEeccCCHHHHHHHH-hhcCCCc
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNWP------TYPQV--------------VPYDTFDILQDQEVREGLK-IYSNWPT  173 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apWP------~~~~~--------------v~~~~~d~~~~~~~~~~l~-~~~~~pt  173 (213)
                      ...++..+|+.+......++|+||+||+      .|.++              +.++.+|+..+.++++... .+.++||
T Consensus         6 ~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yPT   85 (122)
T d1g7ea_           6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPV   85 (122)
T ss_dssp             SCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCEE
T ss_pred             eEECCHHhHHHHHhhCCeEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCCe
Confidence            5678899999655555558999999994      33223              4556667777778877654 3568999


Q ss_pred             ccceEeCCe------EeehH--HHHHHHHHc
Q psy15246        174 YPQVYVNTE------LIGGL--DIIKELQVA  196 (213)
Q Consensus       174 ~p~i~i~g~------~~gg~--d~~~~~~~~  196 (213)
                      + .+|.+|+      +-|..  +.+.+..++
T Consensus        86 i-~~f~~G~~~~~~~y~G~rt~~~l~~fi~~  115 (122)
T d1g7ea_          86 F-YLFRDGDFENPVPYSGAVKVGAIQRWLKG  115 (122)
T ss_dssp             E-EEEESSCCCCCEEEESCCCHHHHHHHHHT
T ss_pred             E-EEEecCcccCceecCCCCCHHHHHHHHHh
Confidence            9 7899984      44554  455555444

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.98  E-value=8.9e-06  Score=58.43  Aligned_cols=87  Identities=17%  Similarity=0.177  Sum_probs=60.2

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------------CchhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------------DLPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~~l~~   67 (213)
                      .++++|+.|| +.||+.|....+.++++..++...+..++.|..+                            ...++++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  104 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  104 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHH
Confidence            4789999999 9999999999999999998887546777777653                            2345788


Q ss_pred             hCCCcc------ccEEEEE-eCCCCccccc-----CCCchhHHHHHHH
Q psy15246         68 NYKVSA------VPTFVIL-KNLKPVDRVE-----GADPESLDKKLQN  103 (213)
Q Consensus        68 ~~~I~~------~Pti~~~-~~g~~~~~~~-----g~~~~~l~~~i~~  103 (213)
                      .|++..      .|+..++ ++|+......     |.+.+++.+.|+.
T Consensus       105 ~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka  152 (158)
T d1zyea1         105 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA  152 (158)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            898873      3445555 4776533222     2333456666653

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=3.7e-07  Score=61.46  Aligned_cols=79  Identities=20%  Similarity=0.355  Sum_probs=56.0

Q ss_pred             ccccCCCccc-ccchhhhhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceE
Q psy15246        115 ITHVPYDTFD-ILQDQEVREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVY  178 (213)
Q Consensus       115 ~~~~~~~~f~-~l~~~~~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~  178 (213)
                      +..++.++|+ .+.+....++|.|||||        |.+.++       +.+..+|+++++.++..+. ..++||+ .+|
T Consensus         4 v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~-v~~~PT~-~~~   81 (108)
T d2trxa_           4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYG-IRGIPTL-LLF   81 (108)
T ss_dssp             EEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTT-CCSSSEE-EEE
T ss_pred             ceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhC-CCcEEEE-EEE
Confidence            3567788887 34344445889999999        333333       6788999999999888777 7889998 788


Q ss_pred             eCCe----Eeeh--HHHHHHHHH
Q psy15246        179 VNTE----LIGG--LDIIKELQV  195 (213)
Q Consensus       179 i~g~----~~gg--~d~~~~~~~  195 (213)
                      .+|+    ++|.  .+.+.++.+
T Consensus        82 ~~G~~v~~~~G~~~~~~l~~~i~  104 (108)
T d2trxa_          82 KNGEVAATKVGALSKGQLKEFLD  104 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCHHHHHHHHH
Confidence            8997    4453  355555443

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=9.2e-06  Score=59.43  Aligned_cols=41  Identities=12%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHH---HHHcCCCcEEEEEEe
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEM---SKQSKYSQVVFARCI   58 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l---~~~~~~~~v~~~~vd   58 (213)
                      .+.+.||.|+.-.||||+++.+.+..+   ....++ .+.+....
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~-~~~~~~~~   60 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYH   60 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCT-TCCEEEEE
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCC-ceEEEEEe
Confidence            456789999999999999999877443   344443 56666654

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.94  E-value=3e-05  Score=48.45  Aligned_cols=72  Identities=15%  Similarity=0.159  Sum_probs=52.5

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKL  101 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i  101 (213)
                      +..|..++|+.|.+....+.+    ..  .+.+-.+|+++++++..+|+.+ +|.+.  .+|.... .-+++.++|.+++
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~~--~~~~~~vdI~~d~~l~~~y~~~-IPVl~--~~~~~~l-~w~fd~~~l~~~L   71 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----AR--AGAFFSVFIDDDAALESAYGLR-VPVLR--DPMGREL-DWPFDAPRLRAWL   71 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----TT--CCCEEEEECTTCHHHHHHHTTT-CSEEE--CTTCCEE-ESCCCHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh----cc--CCcEEEEEccCCHHHHHHhCCe-eeEEE--ECCeeEE-cCccCHHHHHHHH
Confidence            567899999999987665443    22  4678899999999999999976 89764  2443222 2246777898888


Q ss_pred             HH
Q psy15246        102 QN  103 (213)
Q Consensus       102 ~~  103 (213)
                      ..
T Consensus        72 ~~   73 (75)
T d1ttza_          72 DA   73 (75)
T ss_dssp             HT
T ss_pred             hc
Confidence            64

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.4e-05  Score=55.31  Aligned_cols=90  Identities=6%  Similarity=0.037  Sum_probs=59.8

Q ss_pred             CCCeEEEEEEcCCCH-HHHhHHHHHHHHHHHcCC----CcEEEEEEeCCC----------------------------ch
Q psy15246         17 KDKTAVVHFYADWSD-ECKHMNTLFDEMSKQSKY----SQVVFARCIAED----------------------------LP   63 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~-~C~~~~~~~~~l~~~~~~----~~v~~~~vd~~~----------------------------~~   63 (213)
                      .++++||.||.+||+ .|....+.+.++.+.+..    ..+.+..+..+.                            ..
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            689999999999996 698888888777665431    234544444321                            01


Q ss_pred             hHHHhCCCccc---------------cEEEEEe-CCCCcccccCCCch-hHHHHHHHHhc
Q psy15246         64 KLSLNYKVSAV---------------PTFVILK-NLKPVDRVEGADPE-SLDKKLQNQAS  106 (213)
Q Consensus        64 ~l~~~~~I~~~---------------Pti~~~~-~g~~~~~~~g~~~~-~l~~~i~~~~~  106 (213)
                      .+...|++...               +++.++. +|+.+.++.+.... ++.+.|+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            24566665433               5666675 88888877654444 78888888764

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.93  E-value=2.6e-06  Score=56.15  Aligned_cols=60  Identities=25%  Similarity=0.140  Sum_probs=41.0

Q ss_pred             hhheeccCC-CCCCCC-------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee-h---HHHHHHHH
Q psy15246        133 EGLKIYSNW-PTYPQV-------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG-G---LDIIKELQ  194 (213)
Q Consensus       133 ~~v~~~apW-P~~~~~-------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g-g---~d~~~~~~  194 (213)
                      .++.|++|| |.++++             +.+..+|++.++++++.+.    ..++|++++||+.++ |   .+++.+..
T Consensus        18 ~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~----I~~vPt~~~ng~~~~~G~~~~~~l~~~l   93 (96)
T d1hyua4          18 EFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERN----VMGVPAVFVNGKEFGQGRMTLTEIVAKV   93 (96)
T ss_dssp             EEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTT----CCSSSEEEETTEEEEESCCCHHHHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhcc----cccccEEEECCEEEEecCCCHHHHHHHH
Confidence            466788999 444333             7889999999988877654    446777899998775 3   34444444


Q ss_pred             Hc
Q psy15246        195 VA  196 (213)
Q Consensus       195 ~~  196 (213)
                      ++
T Consensus        94 es   95 (96)
T d1hyua4          94 DT   95 (96)
T ss_dssp             CC
T ss_pred             hC
Confidence            33

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=1.7e-05  Score=57.23  Aligned_cols=42  Identities=14%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .++++++.|| +.||++|....+.++++..++.  ++.++.|..+
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d   85 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISAD   85 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEESS
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEcC
Confidence            5778888888 7799999999999999988887  5777777644

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.7e-06  Score=59.13  Aligned_cols=67  Identities=10%  Similarity=0.245  Sum_probs=49.6

Q ss_pred             ccccCCCcccccchhhhhhhheeccCC-CCCCCC-----------------CCceEEeccCCHHHHHHHHhhcCCCcccc
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNW-PTYPQV-----------------VPYDTFDILQDQEVREGLKIYSNWPTYPQ  176 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apW-P~~~~~-----------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~  176 (213)
                      +..++.++|+.+.+.....+|.||+|| |.+.++                 +.++.+|+..+.+++..+. ..++||+ .
T Consensus         9 V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-i~~~Pt~-~   86 (120)
T d1meka_           9 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYG-VRGYPTI-K   86 (120)
T ss_dssp             EEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHT-CCSSSEE-E
T ss_pred             eEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhC-CccCCeE-E
Confidence            455678888844344445889999999 344333                 6789999999988888776 7788988 6


Q ss_pred             eEeCCeE
Q psy15246        177 VYVNTEL  183 (213)
Q Consensus       177 i~i~g~~  183 (213)
                      +|.+|+.
T Consensus        87 ~~~~G~~   93 (120)
T d1meka_          87 FFRNGDT   93 (120)
T ss_dssp             EEESSCS
T ss_pred             EEECCeE
Confidence            7888854

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.86  E-value=3.7e-05  Score=56.62  Aligned_cols=88  Identities=15%  Similarity=0.088  Sum_probs=62.5

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-------------------------CchhHHHhCC
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-------------------------DLPKLSLNYK   70 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-------------------------~~~~l~~~~~   70 (213)
                      .++.+++.|| +.||+.|....+.+++..+++...++.++.|..+                         .+.+++++||
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence            4688999999 9999999999999999999887546777777754                         3445788898


Q ss_pred             Cc------cccEEEEEe-CCCCcccc-----cCCCchhHHHHHHHH
Q psy15246         71 VS------AVPTFVILK-NLKPVDRV-----EGADPESLDKKLQNQ  104 (213)
Q Consensus        71 I~------~~Pti~~~~-~g~~~~~~-----~g~~~~~l~~~i~~~  104 (213)
                      +.      ..|+..+++ +|+.....     .|.+..++.+.|+.+
T Consensus       109 v~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaL  154 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHH
Confidence            85      346666665 56532221     234445666666654

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.83  E-value=2.1e-06  Score=58.23  Aligned_cols=53  Identities=19%  Similarity=0.318  Sum_probs=42.4

Q ss_pred             hhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        131 VREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ...+|.||++|        |.+.++       +.|..+|+++++++++.+. ..++||+ .+|.+|+.++
T Consensus        25 k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~-v~~~Pt~-~~~~~G~~v~   92 (112)
T d1ep7a_          25 KPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAG-ITAMPTF-HVYKDGVKAD   92 (112)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHT-CCBSSEE-EEEETTEEEE
T ss_pred             CeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecccccccccccc-ccCCCEE-EEEECCEEEE
Confidence            34789999999        555444       7889999999999988876 7789998 7889998544

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=97.80  E-value=2.9e-06  Score=57.50  Aligned_cols=71  Identities=21%  Similarity=0.429  Sum_probs=50.9

Q ss_pred             CCcccccCCCccccc-ch-hhhhhhheeccCC--------CCCCCC------CCceEEeccC-CHHHHHHHHhhcCCCcc
Q psy15246        112 PSNITHVPYDTFDIL-QD-QEVREGLKIYSNW--------PTYPQV------VPYDTFDILQ-DQEVREGLKIYSNWPTY  174 (213)
Q Consensus       112 p~~~~~~~~~~f~~l-~~-~~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~-~~~~~~~l~~~~~~pt~  174 (213)
                      .+.+..++.++|+.+ .. .+...+|.||++|        |.+.++      +.+..+|++. ++++++.+. ..++||+
T Consensus         5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~-V~~~Pt~   83 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELG-IRVVPTF   83 (112)
T ss_dssp             TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHC-CSSSSEE
T ss_pred             ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccccceeecccccccchhhHhhee-eccCCEE
Confidence            334556677777733 32 2345788999999        555554      6788999976 688887776 7789999


Q ss_pred             cceEeCCeEe
Q psy15246        175 PQVYVNTELI  184 (213)
Q Consensus       175 p~i~i~g~~~  184 (213)
                       .+|-+|+.+
T Consensus        84 -~~~k~G~~v   92 (112)
T d1f9ma_          84 -KILKENSVV   92 (112)
T ss_dssp             -EEEETTEEE
T ss_pred             -EEEECCEEE
Confidence             788899853

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=97.75  E-value=2.4e-06  Score=57.93  Aligned_cols=51  Identities=18%  Similarity=0.378  Sum_probs=41.9

Q ss_pred             hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ..+|.||++|        |.++++      +.|..+|++.+++++..+. ..++||+ .+|.||+.+
T Consensus        28 ~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~-I~~~Pt~-~~~k~G~~v   92 (113)
T d1ti3a_          28 LIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWN-VEAMPTF-IFLKDGKLV   92 (113)
T ss_dssp             EEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHH-CSSTTEE-EEEETTEEE
T ss_pred             EEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeeccccccccCe-ecccceE-EEEECCEEE
Confidence            3688999999        555554      6789999999999988877 8899999 788999844

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.74  E-value=1.9e-06  Score=58.62  Aligned_cols=52  Identities=12%  Similarity=0.254  Sum_probs=42.0

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeE
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTEL  183 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~  183 (213)
                      +...+|.|||+|        |.+.++      +.|..+|+++++++++.+. +.++||+ .+|.+|+.
T Consensus        26 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~-V~~~Pt~-~~~~~G~~   91 (113)
T d1r26a_          26 DILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCR-VLQLPTF-IIARSGKM   91 (113)
T ss_dssp             SSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTT-CCSSSEE-EEEETTEE
T ss_pred             CCeEEEEEECCCCccchhhceeccccccccccccccccccccchhhHHHcc-ccCCCEE-EEEECCEE
Confidence            334788899999        455444      8899999999999988776 7889999 78899964

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.71  E-value=5e-05  Score=47.44  Aligned_cols=71  Identities=15%  Similarity=0.330  Sum_probs=51.8

Q ss_pred             EEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCC--CchhHHHH
Q psy15246         23 VHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGA--DPESLDKK  100 (213)
Q Consensus        23 V~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~--~~~~l~~~  100 (213)
                      |....+.|+.|.++....+++++++.- ...+.++  ++-.++. +|||.++|.+++  ||+.+  ..|.  +.++|.++
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi-~a~v~kv--~d~~ei~-~ygVmstPalvI--dg~vv--~~G~vPs~~ei~~~   75 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGI-DAEFEKI--KEMDQIL-EAGLTALPGLAV--DGELK--IMGRVASKEEIKKI   75 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTC-CEEEEEE--CSHHHHH-HHTCSSSSCEEE--TTEEE--ECSSCCCHHHHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCC-ceEEEEe--CCHHHHH-HcCCcCCCEEEE--CCEEE--EEecCCCHHHHHHH
Confidence            455689999999999999999888763 5565555  4566676 699999999876  67644  3454  33467766


Q ss_pred             H
Q psy15246        101 L  101 (213)
Q Consensus       101 i  101 (213)
                      |
T Consensus        76 L   76 (77)
T d1iloa_          76 L   76 (77)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=9.7e-05  Score=54.79  Aligned_cols=88  Identities=18%  Similarity=0.161  Sum_probs=63.4

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------------CchhHHH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------------DLPKLSL   67 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~~l~~   67 (213)
                      .++.+++.|| +.||+.|......+.+..+++...++.++.|.++                            .+.++++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence            4788999999 9999999999999999999988667888888754                            3346889


Q ss_pred             hCCCc------cccEEEEEe-CCCCccc-----ccCCCchhHHHHHHHH
Q psy15246         68 NYKVS------AVPTFVILK-NLKPVDR-----VEGADPESLDKKLQNQ  104 (213)
Q Consensus        68 ~~~I~------~~Pti~~~~-~g~~~~~-----~~g~~~~~l~~~i~~~  104 (213)
                      .||+.      .+|+..++. +|+....     ..|.+..++.+.|+.+
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            99885      356666665 5653221     1234445666666555

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.69  E-value=3.1e-06  Score=56.29  Aligned_cols=53  Identities=23%  Similarity=0.451  Sum_probs=42.2

Q ss_pred             hhhhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      +...+|.||++|        |.+.++      ..|+.+|+++++++++.+. ..+.||+ .+|.+|+.+
T Consensus        18 ~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~-V~~~Pt~-i~~k~G~~v   84 (103)
T d1syra_          18 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKEN-ITSMPTF-KVYKNGSSV   84 (103)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTT-CCSSSEE-EEEETTEEE
T ss_pred             CCcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccCcceeeeee-eecceEE-EEEECCEEE
Confidence            334788999999        555444      6789999999999988776 7788998 788999854

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=97.66  E-value=4.4e-05  Score=48.38  Aligned_cols=56  Identities=13%  Similarity=0.186  Sum_probs=42.0

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchh----HHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPK----LSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~----l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      +..|..+|||+|.+.+..+++.       ++.+..+|++.+++    +.+..|.+++|.+.  -+|+.+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~--i~~~~I   62 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI   62 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc-------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence            4568899999999999888775       46677778877654    44556899999874  477643

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.65  E-value=6.3e-05  Score=54.50  Aligned_cols=89  Identities=16%  Similarity=0.223  Sum_probs=61.8

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCC----------------------------chhHH
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAED----------------------------LPKLS   66 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~l~   66 (213)
                      ..++.+||.|| +.||+.|......|++..+++...++.++.|..+.                            ...++
T Consensus        25 ~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~  104 (170)
T d2h01a1          25 IGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  104 (170)
T ss_dssp             TTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHH
Confidence            44578999999 89999999999999999988876578888888652                            24678


Q ss_pred             HhCCCc-----cccEEEEEe-CCCCcccccC-----CCchhHHHHHHHH
Q psy15246         67 LNYKVS-----AVPTFVILK-NLKPVDRVEG-----ADPESLDKKLQNQ  104 (213)
Q Consensus        67 ~~~~I~-----~~Pti~~~~-~g~~~~~~~g-----~~~~~l~~~i~~~  104 (213)
                      ++||+.     ..++..++. +|.......+     .+.+++.+.|+.+
T Consensus       105 ~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1         105 RSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HHhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            889883     345666665 6654332211     2223566666554

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.63  E-value=0.0001  Score=52.81  Aligned_cols=42  Identities=14%  Similarity=0.126  Sum_probs=34.8

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~   60 (213)
                      .++.++|.|| +.||+.|....+.+.+...++.  ++.++.|..+
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d   83 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMD   83 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEESS
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEec
Confidence            5678888888 7899999999999999888887  5777777654

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=5.8e-05  Score=54.59  Aligned_cols=44  Identities=16%  Similarity=0.225  Sum_probs=35.1

Q ss_pred             CCCeEEEEEEcCCCH-HHHhHHHHHHHHHHHcC--CCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSD-ECKHMNTLFDEMSKQSK--YSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~-~C~~~~~~~~~l~~~~~--~~~v~~~~vd~~   60 (213)
                      .++++||.||.+||+ .|....+.+.++.+.+.  +.++.++.|..|
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            689999999999997 69999999988877764  235777777654

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.62  E-value=2.5e-06  Score=58.71  Aligned_cols=67  Identities=9%  Similarity=0.145  Sum_probs=46.6

Q ss_pred             ccccCCCcccccchhhhhhhheeccCC------CCCCCC----------CCceEEeccC-----CHHHHHHHHh-hcCCC
Q psy15246        115 ITHVPYDTFDILQDQEVREGLKIYSNW------PTYPQV----------VPYDTFDILQ-----DQEVREGLKI-YSNWP  172 (213)
Q Consensus       115 ~~~~~~~~f~~l~~~~~~~~v~~~apW------P~~~~~----------v~~~~~d~~~-----~~~~~~~l~~-~~~~p  172 (213)
                      ...++..+|+.+.+.....+|.|||||      |.|.++          +.++.+||+.     +.+++..++- ..++|
T Consensus         4 ~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~P   83 (122)
T d2c0ga2           4 CVDLDELSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFP   83 (122)
T ss_dssp             CEECCTTTHHHHHTTSSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCC
T ss_pred             eEEcChHhHHHHHhcCCcEEEEEECCCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCC
Confidence            356788999955555555899999999      455555          5678899864     4667766651 13688


Q ss_pred             cccceEeCCe
Q psy15246        173 TYPQVYVNTE  182 (213)
Q Consensus       173 t~p~i~i~g~  182 (213)
                      |+ .+|.+|+
T Consensus        84 Ti-~~f~~g~   92 (122)
T d2c0ga2          84 SI-FLFKGNA   92 (122)
T ss_dssp             EE-EEESSSS
T ss_pred             cE-EEEeCCc
Confidence            88 6676664

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.61  E-value=5.5e-06  Score=56.17  Aligned_cols=51  Identities=14%  Similarity=0.296  Sum_probs=41.1

Q ss_pred             hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ..+|.||++|        |.++++      +.|..+|+++++++++.++ ..++||+ .+|.+|+.+
T Consensus        30 ~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~-V~~~Pt~-~~~~~G~~v   94 (114)
T d1xfla_          30 LVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWA-IQAMPTF-MFLKEGKIL   94 (114)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTT-CCSSSEE-EEEETTEEE
T ss_pred             eEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeeceeeccccc-eeeeEEE-EEEECCEEE
Confidence            3678899999        555544      6789999999999988776 7789998 788999864

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00032  Score=52.76  Aligned_cols=90  Identities=8%  Similarity=0.062  Sum_probs=64.0

Q ss_pred             hcCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-------------------------------Cc
Q psy15246         15 YGKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-------------------------------DL   62 (213)
Q Consensus        15 ~~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-------------------------------~~   62 (213)
                      ...++.+|+.|| ++||+.|......+++...++...++.++.|.++                               .+
T Consensus        24 ~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~  103 (220)
T d1prxa_          24 FLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRN  103 (220)
T ss_dssp             HHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTT
T ss_pred             HcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcc
Confidence            345678888888 7899999999999999999888656777777554                               34


Q ss_pred             hhHHHhCCCc------------cccEEEEEe-CCCCccc-----ccCCCchhHHHHHHHH
Q psy15246         63 PKLSLNYKVS------------AVPTFVILK-NLKPVDR-----VEGADPESLDKKLQNQ  104 (213)
Q Consensus        63 ~~l~~~~~I~------------~~Pti~~~~-~g~~~~~-----~~g~~~~~l~~~i~~~  104 (213)
                      .+++++||+.            ..+++.++. +|.....     ..|++.+++.+.|+.+
T Consensus       104 ~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         104 RELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             cHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence            5688999886            346667775 5643221     2355556676666654

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=8.6e-06  Score=54.61  Aligned_cols=51  Identities=22%  Similarity=0.242  Sum_probs=41.5

Q ss_pred             hhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        133 EGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       133 ~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      .+|.||++|        |.+.++      +.|..+|+++++++.+.+. ..+.||+ .+|.+|+.++
T Consensus        24 vvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~-v~~~Pt~-~~~~~G~~v~   88 (107)
T d1gh2a_          24 AVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNN-ISATPTF-QFFRNKVRID   88 (107)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTT-CCSSSEE-EEEETTEEEE
T ss_pred             EEEEEECCCCCCccccchhhhccccccccccccccccccchhhhhhcC-ceeceEE-EEEECCEEEE
Confidence            677899999        555444      7789999999999987776 7789999 7899998654

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=1.5e-05  Score=53.04  Aligned_cols=52  Identities=19%  Similarity=0.376  Sum_probs=40.8

Q ss_pred             hhhheeccCC--------CCCCCC------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        132 REGLKIYSNW--------PTYPQV------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       132 ~~~v~~~apW--------P~~~~~------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      ..+|.|||+|        |.+.++      +.|..+|+++++++.+.+. ..++||+ .+|.||+.++
T Consensus        22 ~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~-V~~~Pt~-~~~~~G~~v~   87 (105)
T d2ifqa1          22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECE-VKCMPTF-QFFKKGQKVG   87 (105)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTT-CCBSSEE-EEEETTEEEE
T ss_pred             EEEEEEEcCCccchhhhhhhhhhhccccccceeeecccccCHhHHHHcC-ceEEEEE-EEEECCEEEE
Confidence            3678899999        444444      5689999999999987776 7789999 7889998543

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=97.41  E-value=0.00021  Score=44.10  Aligned_cols=56  Identities=14%  Similarity=0.153  Sum_probs=40.2

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch---hHHHhCCCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP---KLSLNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~---~l~~~~~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|..++|++|++++..|++.       ++.+..+|.+.+.   .+.+..+..++|.+.  -+|+.+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~--i~g~~I   65 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-------GLSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKHI   65 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCCeEEEEccCcHHHHHHHHHhCCccCCEEE--ECCEEE
Confidence            5679999999999999988875       3455566665433   345567889999874  466543

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=3.6e-05  Score=53.51  Aligned_cols=68  Identities=16%  Similarity=0.150  Sum_probs=48.8

Q ss_pred             cCCCcccc-cch-hhhhhhheeccCC-CCCCCC---------------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        118 VPYDTFDI-LQD-QEVREGLKIYSNW-PTYPQV---------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       118 ~~~~~f~~-l~~-~~~~~~v~~~apW-P~~~~~---------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ++..+|+. +.. .....+|.|+++| |.+.++               +.++.+|+++++++++.+. ..++||+ .+|.
T Consensus        22 ~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~-V~~~PT~-~~~~   99 (132)
T d2hfda1          22 VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFG-VFRFPAT-LVFT   99 (132)
T ss_dssp             ECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHT-CCSCCEE-EEEE
T ss_pred             cccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhc-cCcceeE-EEEE
Confidence            45566663 222 2233677899999 555555               3567899999999988887 7889999 7889


Q ss_pred             CCeEeehH
Q psy15246        180 NTELIGGL  187 (213)
Q Consensus       180 ~g~~~gg~  187 (213)
                      +|+.+|.+
T Consensus       100 ~G~~v~~~  107 (132)
T d2hfda1         100 GGNYRGVL  107 (132)
T ss_dssp             TTEEEEEE
T ss_pred             cCcEeeee
Confidence            99977754

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=5.4e-06  Score=58.27  Aligned_cols=52  Identities=10%  Similarity=0.084  Sum_probs=42.6

Q ss_pred             hhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        131 VREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ...+|.|||||        |.++++       +.|+.+|+++++++.+.++ ..+.||+ .+|.+|+.+
T Consensus        23 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~-I~~~PT~-~~f~~g~~i   89 (137)
T d1qgva_          23 RVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYE-LYDPCTV-MFFFRNKHI   89 (137)
T ss_dssp             SEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSC-SCSSCEE-EEEETTEEE
T ss_pred             CEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcC-eeeEEEE-EEEeCCcEE
Confidence            34788999999        555444       7889999999999887776 7789999 788999876

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.33  E-value=7e-06  Score=52.45  Aligned_cols=53  Identities=17%  Similarity=0.218  Sum_probs=35.4

Q ss_pred             hhheeccCC-CCCCCC--------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEeehH
Q psy15246        133 EGLKIYSNW-PTYPQV--------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIGGL  187 (213)
Q Consensus       133 ~~v~~~apW-P~~~~~--------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~gg~  187 (213)
                      .++.||||| |.+.+.              +.+..+|+++++++++.+. ..++||+ .++-+|+++|+.
T Consensus         5 ~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~-V~~~Pt~-~i~~~g~~~G~~   72 (85)
T d1fo5a_           5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYG-IMAVPTI-VINGDVEFIGAP   72 (85)
T ss_dssp             EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTT-TCCSSEE-EETTEEECCSSS
T ss_pred             EEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCC-ceEeeEE-EEECCcEEECCC
Confidence            355789999 444443              5667888888877766544 5566666 455557888874

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.0013  Score=43.73  Aligned_cols=94  Identities=14%  Similarity=0.235  Sum_probs=67.3

Q ss_pred             eEEeCC-chhhhhhcCCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEe
Q psy15246          3 VVQISE-ELDVEKYGKDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILK   81 (213)
Q Consensus         3 v~~l~~-~~~~~~~~~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~   81 (213)
                      +.+|++ +..+..+.++..++|-|+.+--.   .....|.++|+.++  ++.|+.+.   +.++++.+++.. |+|++|+
T Consensus         2 a~~l~~~~~~e~f~~~~~v~VVGfF~~~~~---~~~~~F~~~A~~~~--d~~F~~t~---~~~v~~~~~v~~-~~Ivl~k   72 (110)
T d1bjxa_           2 ATTLPDGAAAESLVESSEVAVIGFFKDVES---DSAKQFLQAAEAID--DIPFGITS---NSDVFSKYQLDK-DGVVLFK   72 (110)
T ss_dssp             EEECCSHHHHHHHHHHSSEEEEEECTTTTS---HHHHHHHHHHHHCS--SSCEEEEC---CSHHHHHTTCSS-CEEEEEE
T ss_pred             ceEcCCHHHHHHHhccCCeEEEEEEcCCCc---hHHHHHHHHHHhCc--CceEEEEC---CHHHHHHcCCCC-CeEEEec
Confidence            456777 44445567888999989876533   33458899999986  57777654   567899999976 9999999


Q ss_pred             CCC-CcccccCC-CchhHHHHHHHHh
Q psy15246         82 NLK-PVDRVEGA-DPESLDKKLQNQA  105 (213)
Q Consensus        82 ~g~-~~~~~~g~-~~~~l~~~i~~~~  105 (213)
                      +.. ....+.|. +..+|.+||....
T Consensus        73 ~~de~~~~~~~~~~~~~l~~fi~~~~   98 (110)
T d1bjxa_          73 KFDEGRNNFEGEVTKENLLDFIKHNQ   98 (110)
T ss_dssp             SSSSSBCCCCSCCCHHHHHHHHHHHS
T ss_pred             cCCccccccCCCCCHHHHHHHHHHcC
Confidence            753 33334444 4448999999885

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.21  E-value=2.1e-05  Score=53.71  Aligned_cols=66  Identities=17%  Similarity=0.204  Sum_probs=38.4

Q ss_pred             cCCCccc-ccch-hhhhhhheeccCC-CCCCCC---------------CCceEEeccCCHHHHHHHHhhcCCCcccceEe
Q psy15246        118 VPYDTFD-ILQD-QEVREGLKIYSNW-PTYPQV---------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYV  179 (213)
Q Consensus       118 ~~~~~f~-~l~~-~~~~~~v~~~apW-P~~~~~---------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i  179 (213)
                      ++..+++ .+.. .....++.|+++| |.+.+.               +.++.+|+++++++++.+. ..++||+ .+|.
T Consensus        16 v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~-V~~~Pt~-~~~~   93 (119)
T d2es7a1          16 VEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFN-VRRFPAT-LVFT   93 (119)
T ss_dssp             CCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTT-CCSSSEE-EEES
T ss_pred             ecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcC-cCcceEE-EEEE
Confidence            4556666 2322 2334777899999 444444               4567899998888887766 7788998 7888


Q ss_pred             CCeEee
Q psy15246        180 NTELIG  185 (213)
Q Consensus       180 ~g~~~g  185 (213)
                      +|+.+|
T Consensus        94 ~G~~v~   99 (119)
T d2es7a1          94 DGKLRG   99 (119)
T ss_dssp             CC----
T ss_pred             cCeEEE
Confidence            887544

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.18  E-value=0.0013  Score=43.22  Aligned_cols=94  Identities=11%  Similarity=0.184  Sum_probs=65.0

Q ss_pred             eEEeCCchhhhh-hc-CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEE
Q psy15246          3 VVQISEELDVEK-YG-KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVIL   80 (213)
Q Consensus         3 v~~l~~~~~~~~-~~-~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~   80 (213)
                      |..|++..+.+. +. ++..++|=|+.+--+.   ....|.++|..+++ ++.|+.+.   +.+++++++|. .|++++|
T Consensus         1 v~~i~~~~e~~~F~~~~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd-~~~F~~t~---d~~va~~~~v~-~~~vvlf   72 (102)
T d1a8ya2           1 VELIEGERELQAFENIEDEIKLIGYFKNKDSE---HYKAFKEAAEEFHP-YIPFFATF---DSKVAKKLTLK-LNEIDFY   72 (102)
T ss_dssp             EEEECSHHHHHHHTTCCSSCEEEEECSSTTCH---HHHHHHHHHHHHTT-TSCEEEEC---CHHHHHHHCCC-TTCEEEE
T ss_pred             CeeecCHHHHHHHhccCCCEEEEEEECCCCcH---HHHHHHHHHHHcCC-CceEEEEC---CHHHHHHcCCC-CCCEEEe
Confidence            345666444444 44 5678888888754443   45588888988876 78888754   78999999995 7999999


Q ss_pred             eCC-CCcccccCC--CchhHHHHHHHH
Q psy15246         81 KNL-KPVDRVEGA--DPESLDKKLQNQ  104 (213)
Q Consensus        81 ~~g-~~~~~~~g~--~~~~l~~~i~~~  104 (213)
                      ++= .....+.|.  +..+|.+||+.+
T Consensus        73 r~fde~~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          73 EAFMEEPVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             CTTCSSEEECSSSSCCHHHHHHHHHHT
T ss_pred             eecCCCceecCCCCCCHHHHHHHHHHh
Confidence            843 222234453  445899999886

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.16  E-value=3.3e-05  Score=51.81  Aligned_cols=52  Identities=17%  Similarity=0.296  Sum_probs=40.7

Q ss_pred             hhhhheeccCC--------CCCCCC-------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEe
Q psy15246        131 VREGLKIYSNW--------PTYPQV-------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELI  184 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~-------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~  184 (213)
                      ...+|.||++|        |.+.++       +.+..+|+++++++.+.+. ..++||+ .+|-+|+.+
T Consensus        26 k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~-V~~~Pt~-~~~~~G~~v   92 (111)
T d1xwaa_          26 KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYN-ISSMPTF-VFLKNGVKV   92 (111)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTT-CCSSSEE-EEEETTEEE
T ss_pred             CEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCC-CccccEE-EEEECCEEE
Confidence            34788999999        655555       6778899999998887666 7789999 788898744

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=97.05  E-value=0.00064  Score=48.56  Aligned_cols=44  Identities=11%  Similarity=0.142  Sum_probs=37.2

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL   62 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~   62 (213)
                      .++.+++.|| +.||+.|....+.|++...+++  ++.++.|.++..
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d~~   85 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADLP   85 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESSCH
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCCcH
Confidence            5788999999 6688889999999999999998  688888887753

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.02  E-value=3.5e-05  Score=51.17  Aligned_cols=52  Identities=15%  Similarity=0.111  Sum_probs=37.8

Q ss_pred             hhheeccCC--------CCCCCC-----------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCe----Eeeh
Q psy15246        133 EGLKIYSNW--------PTYPQV-----------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTE----LIGG  186 (213)
Q Consensus       133 ~~v~~~apW--------P~~~~~-----------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~----~~gg  186 (213)
                      .++.|++||        |.+.++           +.+..+|+.+++++++.++ ..++||+ .++.+|+    ++|+
T Consensus        18 ~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~-V~~vPTi-~i~~~G~~~~~~~G~   92 (107)
T d1a8la2          18 RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYN-VMAVPKI-VIQVNGEDRVEFEGA   92 (107)
T ss_dssp             EEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTT-CCSSCEE-EEEETTEEEEEEESC
T ss_pred             EEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccc-cccceEE-EEEeCCeEEEEEECC
Confidence            344689999        444333           5678899999999887776 7788887 6777886    5565

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.0005  Score=49.20  Aligned_cols=46  Identities=13%  Similarity=0.122  Sum_probs=33.9

Q ss_pred             CCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhH
Q psy15246         17 KDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKL   65 (213)
Q Consensus        17 ~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l   65 (213)
                      .++++|+.|| +.||+.|....+.+++..+...   +.++.|..+...+.
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~g---~~vv~Is~d~~~~~   88 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAASG---ATVLCVSKDLPFAQ   88 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHTT---CEEEEEESSCHHHH
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhccccc---ccccccccchHHHH
Confidence            6788999999 5688889998888887766543   56677776654443

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=7.2e-06  Score=57.57  Aligned_cols=80  Identities=18%  Similarity=0.292  Sum_probs=47.3

Q ss_pred             ccccCCCcccc-cchhhhhhhheeccCC--------CCCCCC--------CCceEEeccCCHHHHHHHHhhcCCCcccce
Q psy15246        115 ITHVPYDTFDI-LQDQEVREGLKIYSNW--------PTYPQV--------VPYDTFDILQDQEVREGLKIYSNWPTYPQV  177 (213)
Q Consensus       115 ~~~~~~~~f~~-l~~~~~~~~v~~~apW--------P~~~~~--------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i  177 (213)
                      +..++..+|+. +.+....++|.||+||        |.|.++        ..+..++++.+.++++.+. ..++||+ .+
T Consensus        14 V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~~~~-v~~~Ptl-~~   91 (140)
T d2b5ea1          14 VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVV-IEGYPTI-VL   91 (140)
T ss_dssp             EEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSSCC-CSSSSEE-EE
T ss_pred             cEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhccccc-cccCCeE-EE
Confidence            66788899984 3455556899999999        666665        2333444443333443332 4566776 56


Q ss_pred             EeCCeEe------e--hHHHHHHHHHc
Q psy15246        178 YVNTELI------G--GLDIIKELQVA  196 (213)
Q Consensus       178 ~i~g~~~------g--g~d~~~~~~~~  196 (213)
                      |-+|+.+      |  ..+.+.+..++
T Consensus        92 f~~g~~~~~~~y~G~~t~~~l~~fi~~  118 (140)
T d2b5ea1          92 YPGGKKSESVVYQGSRSLDSLFDFIKE  118 (140)
T ss_dssp             ECCTTSCCCCBCCSCCCHHHHHHHHHH
T ss_pred             EECCEEcceeEeCCCCCHHHHHHHHHH
Confidence            6666532      3  24556555543

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=96.91  E-value=0.002  Score=48.22  Aligned_cols=89  Identities=10%  Similarity=0.118  Sum_probs=63.1

Q ss_pred             cCCCeEEEEEE-cCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC----------------------------CchhHH
Q psy15246         16 GKDKTAVVHFY-ADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE----------------------------DLPKLS   66 (213)
Q Consensus        16 ~~~~~~vV~F~-a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~----------------------------~~~~l~   66 (213)
                      -.++.+|+.|| ++||+.|......|++...++...++.++.|.+|                            .+.+++
T Consensus        28 ~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va  107 (219)
T d1xcca_          28 IENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELA  107 (219)
T ss_dssp             TTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHH
T ss_pred             cCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHH
Confidence            46888999999 9999999999999999999888657888887765                            234688


Q ss_pred             HhCCCcc------------ccEEEEEe-CCCCccc-----ccCCCchhHHHHHHHH
Q psy15246         67 LNYKVSA------------VPTFVILK-NLKPVDR-----VEGADPESLDKKLQNQ  104 (213)
Q Consensus        67 ~~~~I~~------------~Pti~~~~-~g~~~~~-----~~g~~~~~l~~~i~~~  104 (213)
                      +.||+..            .-++.++. +|+....     ..|++.+++.+.|+.+
T Consensus       108 ~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         108 NKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  163 (219)
T ss_dssp             HHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence            8998832            23555555 5543221     2255556777777654

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.0017  Score=45.33  Aligned_cols=28  Identities=11%  Similarity=0.052  Sum_probs=19.7

Q ss_pred             CCCeEEEEEEcCCCHH-HHhHHHHHHHHH
Q psy15246         17 KDKTAVVHFYADWSDE-CKHMNTLFDEMS   44 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~-C~~~~~~~~~l~   44 (213)
                      .+|.+||.||.+||+. |..+...+..+.
T Consensus        25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~   53 (169)
T d2b7ka1          25 LGKFSIIYFGFSNCPDICPDELDKLGLWL   53 (169)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeccccCCcccchhhhhhhhh
Confidence            5899999999999964 544444444443

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=96.82  E-value=1.6e-05  Score=53.69  Aligned_cols=66  Identities=15%  Similarity=0.278  Sum_probs=38.6

Q ss_pred             ccccCCCccccc-chhhhhhhheeccCC--------CCCCCC---------CCceEEeccCCHHHHHHHHhhcCCCcccc
Q psy15246        115 ITHVPYDTFDIL-QDQEVREGLKIYSNW--------PTYPQV---------VPYDTFDILQDQEVREGLKIYSNWPTYPQ  176 (213)
Q Consensus       115 ~~~~~~~~f~~l-~~~~~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~  176 (213)
                      +..++.++|+.+ .+....++|.||+||        |.|.++         ..+..++.......+... ++.++||+ .
T Consensus         4 V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~Pti-~   81 (116)
T d2djja1           4 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD-EIQGFPTI-K   81 (116)
T ss_dssp             SEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS-CCSSSSEE-E
T ss_pred             cEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcc-cccCCCEE-E
Confidence            355778889843 355556899999999        666655         123344444332222212 35567777 4


Q ss_pred             eEeCCe
Q psy15246        177 VYVNTE  182 (213)
Q Consensus       177 i~i~g~  182 (213)
                      +|.+|+
T Consensus        82 ~f~~g~   87 (116)
T d2djja1          82 LYPAGA   87 (116)
T ss_dssp             EECSSC
T ss_pred             EEECCc
Confidence            666664

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.73  E-value=0.00012  Score=46.45  Aligned_cols=49  Identities=20%  Similarity=0.305  Sum_probs=33.8

Q ss_pred             heeccCC-CCCCCC--------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCC--eEeehH
Q psy15246        135 LKIYSNW-PTYPQV--------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNT--ELIGGL  187 (213)
Q Consensus       135 v~~~apW-P~~~~~--------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g--~~~gg~  187 (213)
                      ..||+|| |.+.+.              +.++.+|++++++++..+    +...+|+++++|  +++|..
T Consensus         6 ~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~----~V~~~Pt~~~~~~~~~~G~~   71 (85)
T d1nhoa_           6 EVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEY----GLMAVPAIAINGVVRFVGAP   71 (85)
T ss_dssp             EEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGT----CSSCSSEEEETTTEEEECSS
T ss_pred             EEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhc----CceEeCEEEECCcEEEEcCC
Confidence            3489999 444444              788999999988775543    345666777786  467763

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.09  E-value=0.031  Score=36.24  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=58.7

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCC-cccccC-CCc
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKP-VDRVEG-ADP   94 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~-~~~~~g-~~~   94 (213)
                      -.+++.+..+.+.|+.|..+...+++++..-.  ++.+..-+.          +....|++.+.++|+. --++.| +..
T Consensus        17 l~~~V~l~~~~~~~~~s~el~~~l~eva~lSd--kI~~~~~~~----------~~~r~Ps~~i~~~g~~~gI~F~GiP~G   84 (102)
T d1hyua3          17 LTKPVELIATLDDSAKSAEIKELLAEIAELSD--KVTFKEDNT----------LPVRKPSFLITNPGSQQGPRFAGSPLG   84 (102)
T ss_dssp             CCSCEEEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEECTT----------SSSCSSEEEEECTTCCCSCEEESCCCG
T ss_pred             CCCCEEEEEEeCCChhHHHHHHHHHHHHhhCC--CeEEEEcCC----------CCCCCCeEEEecCCCEeeeEEecCCCc
Confidence            45677778888999999999999999988765  777753222          1234699999887754 234555 455


Q ss_pred             hhHHHHHHHHhccCCCCC
Q psy15246         95 ESLDKKLQNQASTMKNQP  112 (213)
Q Consensus        95 ~~l~~~i~~~~~~~kg~p  112 (213)
                      .++..+|...++ ..|.|
T Consensus        85 hEF~Slilail~-v~G~p  101 (102)
T d1hyua3          85 HEFTSLVLALLW-TGGHP  101 (102)
T ss_dssp             GGHHHHHHHHHH-HTTCC
T ss_pred             ccHHHHHHHHHh-ccCCc
Confidence            689998888775 34544

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.006  Score=40.30  Aligned_cols=50  Identities=8%  Similarity=-0.015  Sum_probs=36.6

Q ss_pred             CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHH----HhCCCccccEEEEEeCCCCc
Q psy15246         28 DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLS----LNYKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        28 ~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~----~~~~I~~~Pti~~~~~g~~~   86 (213)
                      |.|++|++.+..|.++       ++.+..+|.+.++++.    +..+...+|.+.  -+|+.+
T Consensus        28 p~Cp~c~~ak~lL~~~-------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIF--i~g~~I   81 (109)
T d1wika_          28 AKCGFSKQILEILNST-------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY--VRGDLV   81 (109)
T ss_dssp             CCSSTHHHHHHHHHHT-------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE--CSSSEE
T ss_pred             CCChHHHHHHHHHHhc-------CCCceEEEecccHHHHHHHHHhcCCCCCCeEE--ECCEEE
Confidence            8899999999888754       4567777888766543    445778888874  577644

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.51  E-value=0.034  Score=41.38  Aligned_cols=84  Identities=18%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             CCeEEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCC-----------Cc-------hhHHHhCCCccccEEEE
Q psy15246         18 DKTAVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAE-----------DL-------PKLSLNYKVSAVPTFVI   79 (213)
Q Consensus        18 ~~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~-----------~~-------~~l~~~~~I~~~Pti~~   79 (213)
                      -+.++=.|.+.||+.|-.....+++|++. +  +|..+....+           ..       ...+.+++.+++||=-+
T Consensus         5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~-~--~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~   81 (225)
T d2axoa1           5 VKGVVELFTSQGCASCPPADEALRKMIQK-G--DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQA   81 (225)
T ss_dssp             CCCEEEEEECTTCTTCHHHHHHHHHHHHH-T--SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEE
T ss_pred             CCcEEEEeeCCCCCCCHHHHHHHHHhhCC-C--CEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeE
Confidence            34566689999999999999999999875 3  5555555543           11       23566779998888777


Q ss_pred             EeCCCCcccccCCCchhHHHHHHHHhc
Q psy15246         80 LKNLKPVDRVEGADPESLDKKLQNQAS  106 (213)
Q Consensus        80 ~~~g~~~~~~~g~~~~~l~~~i~~~~~  106 (213)
                      +.+|+.  ...|.+...+...|.....
T Consensus        82 vvnG~~--~~~gs~~~~~~~~i~~~~~  106 (225)
T d2axoa1          82 ILNGRD--HVKGADVRGIYDRLDAFKR  106 (225)
T ss_dssp             EETTTE--EEETTCHHHHHHHHHHHHH
T ss_pred             EEeCcc--cccccCHHHHHHHHHHHhh
Confidence            778863  3457777778888877653

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=95.13  E-value=0.11  Score=33.57  Aligned_cols=85  Identities=14%  Similarity=0.227  Sum_probs=59.3

Q ss_pred             CeEEEEEEcCCCHHHHhHHHHHHHHHHHcCC-CcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCch-h
Q psy15246         19 KTAVVHFYADWSDECKHMNTLFDEMSKQSKY-SQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPE-S   96 (213)
Q Consensus        19 ~~~vV~F~a~wC~~C~~~~~~~~~l~~~~~~-~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~-~   96 (213)
                      +...+..|...-+.+.+....+.++.+.+.. ..+.+-.||+.+++++++.++|-.+||++=.... +..+..|.+-. .
T Consensus        11 ~~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P~-P~q~l~Gs~i~~q   89 (105)
T d1t4za_          11 QPLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPG-SRQVLSGIDLTDQ   89 (105)
T ss_dssp             CCEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESS-CCEEEESSCHHHH
T ss_pred             CCeEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCCC-cceeecChhHHHH
Confidence            3444445555557777777777777776543 2488899999999999999999999998744322 33456675554 5


Q ss_pred             HHHHHHHH
Q psy15246         97 LDKKLQNQ  104 (213)
Q Consensus        97 l~~~i~~~  104 (213)
                      +..|.-+.
T Consensus        90 l~~w~prw   97 (105)
T d1t4za_          90 LANQLPQW   97 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HhhhhhHh
Confidence            77776554

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.0067  Score=44.35  Aligned_cols=43  Identities=12%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             CCCeEEEEEEcCCCHHHHhHHHHHH---HHHHHcCCCcEEEEEEeCC
Q psy15246         17 KDKTAVVHFYADWSDECKHMNTLFD---EMSKQSKYSQVVFARCIAE   60 (213)
Q Consensus        17 ~~~~~vV~F~a~wC~~C~~~~~~~~---~l~~~~~~~~v~~~~vd~~   60 (213)
                      .+++.|+.|+.=+||||.++.|.+.   ++.+.+++ ++.|..+...
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~-~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCC-CcEEEEEecC
Confidence            4678899999999999999999775   56667775 6677665543

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.54  E-value=0.01  Score=38.40  Aligned_cols=54  Identities=6%  Similarity=0.030  Sum_probs=31.2

Q ss_pred             hhhhhheeccCC--------CCCCCC-CCc----eEEeccCCHHHHHHHHhhcCCCcccceEeCCeE--eehHH
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-VPY----DTFDILQDQEVREGLKIYSNWPTYPQVYVNTEL--IGGLD  188 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-v~~----~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~--~gg~d  188 (213)
                      ....++.|+++|        |.+.++ .+|    ..+|+..++++.+..    +.. +|+|+|||+.  .|..|
T Consensus        15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y----~~~-VPvl~idg~~~~~g~~d   83 (100)
T d1wjka_          15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERY----KFD-IPVFHLNGQFLMMHRVN   83 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHS----SSS-CSEEEESSSEEEESSCC
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHh----ccc-CCceeecCceEEeCCCC
Confidence            344566677888        555544 333    444555555554432    344 8999999964  44444

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.0015  Score=44.08  Aligned_cols=57  Identities=14%  Similarity=0.204  Sum_probs=36.2

Q ss_pred             hhhheecc-------CC--------CCCCCC-------CCceEEeccC-------CHHHHHHHHhhcCCCcccceEeCCe
Q psy15246        132 REGLKIYS-------NW--------PTYPQV-------VPYDTFDILQ-------DQEVREGLKIYSNWPTYPQVYVNTE  182 (213)
Q Consensus       132 ~~~v~~~a-------pW--------P~~~~~-------v~~~~~d~~~-------~~~~~~~l~~~~~~pt~p~i~i~g~  182 (213)
                      ..+|.|||       ||        |.+.++       +.|..+|+..       +..++..++ ..+.||+ .+|-+|+
T Consensus        23 ~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~-V~~iPT~-i~~~~g~  100 (119)
T d1woua_          23 TIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLK-VTAVPTL-LKYGTPQ  100 (119)
T ss_dssp             EEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHC-CCSSSEE-EETTSSC
T ss_pred             EEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCC-eEEEEEE-EEEECCe
Confidence            35778887       48        554433       6788899854       334555443 5677777 4666787


Q ss_pred             EeehHHHH
Q psy15246        183 LIGGLDII  190 (213)
Q Consensus       183 ~~gg~d~~  190 (213)
                      .+.|.+..
T Consensus       101 ~l~~~~~~  108 (119)
T d1woua_         101 KLVESECL  108 (119)
T ss_dssp             EEEGGGGG
T ss_pred             EEeeeecC
Confidence            77776643

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.14  Score=30.81  Aligned_cols=71  Identities=8%  Similarity=0.095  Sum_probs=47.4

Q ss_pred             EEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHHH
Q psy15246         24 HFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQN  103 (213)
Q Consensus        24 ~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~  103 (213)
                      .|+.+.||.|++.+-.+....-.+     .+..++.+...++.+..+-..+|++.. .+|+.+.     .+..|.++|++
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi~~-----e~~~~~~~~~~~~~~~~p~~~VP~L~~-~dg~~i~-----eS~~I~~yLd~   71 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNIPV-----ELHVLLNDDAETPTRMVGQKQVPILQK-DDSRYMP-----ESMDIVHYVDK   71 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTCCC-----EEEECCTTTTHHHHHHHSSSCCCEEEE-TTTEEEE-----CHHHHHHHHHH
T ss_pred             EEccCCCCchHHHHHHHHHhCCCc-----ccccccccchHHHHHhCCCCceEEEEE-cCCCEEe-----cHHHHHHHHHH
Confidence            477899999999888777654333     334445556666777778889998753 3454322     34578888877


Q ss_pred             Hh
Q psy15246        104 QA  105 (213)
Q Consensus       104 ~~  105 (213)
                      .-
T Consensus        72 ~~   73 (75)
T d1g7oa2          72 LD   73 (75)
T ss_dssp             HT
T ss_pred             hh
Confidence            64

>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Circadian oscillation regulator KaiB
species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]

Probab=92.05  E-value=0.049  Score=34.28  Aligned_cols=58  Identities=14%  Similarity=0.083  Sum_probs=48.2

Q ss_pred             EEEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCCCccccEEE
Q psy15246         21 AVVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYKVSAVPTFV   78 (213)
Q Consensus        21 ~vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~I~~~Pti~   78 (213)
                      ++-.|-|..-+.+.+....+.++.+.+-+..+.+-.||..++++++..++|-.+||++
T Consensus         3 ~L~LyVaG~tp~S~~ai~nl~~i~e~~l~~~y~LeVIDv~~qP~lAe~~~IvATPtLv   60 (90)
T d1r5pa_           3 VLKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLS   60 (90)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTSCSCCTTCCEECHHHHG
T ss_pred             EEEEEEcCCChhHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEeehHHH
Confidence            4556778888999998888888877643327899999999999999999999999964

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.21  E-value=0.0066  Score=45.15  Aligned_cols=50  Identities=20%  Similarity=0.209  Sum_probs=33.1

Q ss_pred             hhheeccCC-CCCCCC-------------CCceEEeccCCHHHHHHHHhhcCCCcccceEeCCeEee
Q psy15246        133 EGLKIYSNW-PTYPQV-------------VPYDTFDILQDQEVREGLKIYSNWPTYPQVYVNTELIG  185 (213)
Q Consensus       133 ~~v~~~apW-P~~~~~-------------v~~~~~d~~~~~~~~~~l~~~~~~pt~p~i~i~g~~~g  185 (213)
                      .+|.||+|| |.+..+             ++|..+|+...+.+ ..+ ...+.||+ .+|.+|+.++
T Consensus       123 Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~~~-~~~-~i~~lPtl-~~yk~G~~v~  186 (217)
T d2trcp_         123 IVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAG-DRF-SSDVLPTL-LVYKGGELIS  186 (217)
T ss_dssp             EEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHTCS-TTS-CGGGCSEE-EEEETTEEEE
T ss_pred             EEEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccchhH-HhC-CCCCCCeE-EEEECCEEEE
Confidence            577899999 222222             78888887643222 222 25578999 7999999776

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.00  E-value=0.44  Score=29.68  Aligned_cols=56  Identities=5%  Similarity=0.035  Sum_probs=37.6

Q ss_pred             EEEEEcCCCH------HHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHH----hC--CCccccEEEEEeCCCCc
Q psy15246         22 VVHFYADWSD------ECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSL----NY--KVSAVPTFVILKNLKPV   86 (213)
Q Consensus        22 vV~F~a~wC~------~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~----~~--~I~~~Pti~~~~~g~~~   86 (213)
                      ++.|++++|+      .|.++...++..       +|.+-.+|++.+++..+    .-  +...+|-+  |.+|+.+
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~-------~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqi--fv~~~~i   71 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDGK-------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQI--VNGNHYC   71 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT-------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEE--EETTEEE
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHHC-------CCceEEEEecCchhHHHHHHHhccCCCceeEEE--EECCEEE
Confidence            4567999995      888888877773       67888899987765442    22  23456664  5567544

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.63  E-value=0.058  Score=33.65  Aligned_cols=51  Identities=10%  Similarity=0.038  Sum_probs=31.5

Q ss_pred             CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc-----h----hHHHh-----CCCccccEEEEEeCCCCc
Q psy15246         28 DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL-----P----KLSLN-----YKVSAVPTFVILKNLKPV   86 (213)
Q Consensus        28 ~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~-----~----~l~~~-----~~I~~~Pti~~~~~g~~~   86 (213)
                      +.|++|.+.+..+.+.       ++.+..+++++.     .    ++.++     .+.+++|.|.+ .+|+.+
T Consensus        12 ~~C~~C~~AK~lL~~~-------~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi-~dg~~I   76 (87)
T d1abaa_          12 HKCGPCDNAKRLLTVK-------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDGSHI   76 (87)
T ss_dssp             SCCHHHHHHHHHHHHT-------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTSCEE
T ss_pred             CCChhHHHHHHHHHHc-------CCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEe-cCCcEE
Confidence            4699999998877774       455666665532     1    12222     36778998832 356533

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.14  E-value=0.033  Score=36.57  Aligned_cols=54  Identities=7%  Similarity=-0.071  Sum_probs=29.8

Q ss_pred             hhhhhheeccCC--------CCCCCC-----CCceEEeccC--CHHH-HHHHHh--hcCCCcccceEeCCeEe
Q psy15246        130 EVREGLKIYSNW--------PTYPQV-----VPYDTFDILQ--DQEV-REGLKI--YSNWPTYPQVYVNTELI  184 (213)
Q Consensus       130 ~~~~~v~~~apW--------P~~~~~-----v~~~~~d~~~--~~~~-~~~l~~--~~~~pt~p~i~i~g~~~  184 (213)
                      ....+|.||+||        |.+.++     ..+..+++..  +.+. ..-.++  ..+.||+ .+|-+|+.+
T Consensus        26 ~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTl-i~~~~gk~~   97 (115)
T d1zmaa1          26 KETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGF-VHITDGQIN   97 (115)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEE-EEEETTEEE
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEE-EEEECCEEE
Confidence            334788899999        555444     4556667654  3222 222232  3455665 345677744

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=85.68  E-value=1.7  Score=26.30  Aligned_cols=71  Identities=14%  Similarity=0.112  Sum_probs=44.4

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCchhHHHhCC-C-ccccEEEEEeCCCCcccccCCCchhHHH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLPKLSLNYK-V-SAVPTFVILKNLKPVDRVEGADPESLDK   99 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~~l~~~~~-I-~~~Pti~~~~~g~~~~~~~g~~~~~l~~   99 (213)
                      ++.+....|+.|++.+-.+.+..-     .+....+|....++...+.+ . ..+|++.  .+|..+.     .+..|.+
T Consensus         6 l~Ly~~~~Sp~~~rvr~~L~~kgi-----~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~--~~g~~l~-----eS~~I~~   73 (84)
T d1oyja2           6 LVLLDFWVSPFGQRCRIAMAEKGL-----EFEYREEDLGNKSDLLLRSNPVHRKIPVLL--HAGRPVS-----ESLVILQ   73 (84)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTC-----CCEEEECCTTSCCHHHHHHSTTTCCSCEEE--ETTEEEE-----SHHHHHH
T ss_pred             eEEEcCCCChHHHHHHHHHHHcCC-----CcEEEEEccCcCCHHHHhhCCCcCcccEEE--ECCceEE-----cHHHHHH
Confidence            344667889999998777665432     24566667665444444444 4 4589874  5665332     4456888


Q ss_pred             HHHHH
Q psy15246        100 KLQNQ  104 (213)
Q Consensus       100 ~i~~~  104 (213)
                      +|++.
T Consensus        74 YL~e~   78 (84)
T d1oyja2          74 YLDDA   78 (84)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88776

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=83.49  E-value=0.29  Score=31.54  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=27.9

Q ss_pred             hhhhheeccCC--------CCCCCC---------CCceEEeccCCHHHHHHH-Hh--hcCCCcccceE-eCCe
Q psy15246        131 VREGLKIYSNW--------PTYPQV---------VPYDTFDILQDQEVREGL-KI--YSNWPTYPQVY-VNTE  182 (213)
Q Consensus       131 ~~~~v~~~apW--------P~~~~~---------v~~~~~d~~~~~~~~~~l-~~--~~~~pt~p~i~-i~g~  182 (213)
                      ...+|.|||+|        |.+...         ..+..+|+..+.+....+ ++  ..++||+ .+| -+|+
T Consensus        23 K~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~-~~~~~~G~   94 (117)
T d2fwha1          23 KPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTI-LFFDGQGQ   94 (117)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEE-EEECTTSC
T ss_pred             CeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEE-EEEeCCCc
Confidence            35788999999        544322         234566666653332222 22  4577877 333 3464

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.30  E-value=0.86  Score=31.22  Aligned_cols=34  Identities=24%  Similarity=0.200  Sum_probs=25.9

Q ss_pred             hcCCCeEEEEEE-cCCCHHH-HhHHHHHHHHHHHcC
Q psy15246         15 YGKDKTAVVHFY-ADWSDEC-KHMNTLFDEMSKQSK   48 (213)
Q Consensus        15 ~~~~~~~vV~F~-a~wC~~C-~~~~~~~~~l~~~~~   48 (213)
                      +-+++.+++.|| +.|++.| .+..+.+.+....+.
T Consensus        28 ~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~   63 (161)
T d1hd2a_          28 LFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALK   63 (161)
T ss_dssp             HTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHH
T ss_pred             HhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHH
Confidence            346888888898 8999999 567777777665544

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=83.20  E-value=1.6  Score=26.35  Aligned_cols=71  Identities=13%  Similarity=0.089  Sum_probs=45.4

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCc----hhHHHhCCCccccEEEEEeCCCCcccccCCCchhH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDL----PKLSLNYKVSAVPTFVILKNLKPVDRVEGADPESL   97 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~----~~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l   97 (213)
                      +|.|+.+.|+.|++.+-.++++.-     .+.+..||....    +++.+..--..+|++.  .+|..+.     .+..|
T Consensus         2 ~iLY~~~~S~~~~~v~~~l~e~gi-----~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~--~~~~~l~-----ES~aI   69 (85)
T d1r5aa2           2 TVLYYLPASPPCRSVLLLAKMIGV-----ELDLKVLNIMEGEQLKPDFVELNPQHCIPTMD--DHGLVLW-----ESRVI   69 (85)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTC-----CEEEEECCTTTTGGGSHHHHTTCTTCCSSEEE--ETTEEEE-----CHHHH
T ss_pred             EEEEcCCCCHhHHHHHHHHHHcCC-----CCEEEEecCCCcccCCHHHHHHHhcCCCCEEE--Eccccee-----cHHHH
Confidence            678999999999998877666422     456777776543    3444444445799875  4554332     33457


Q ss_pred             HHHHHHH
Q psy15246         98 DKKLQNQ  104 (213)
Q Consensus        98 ~~~i~~~  104 (213)
                      ..++.+.
T Consensus        70 ~~YL~~~   76 (85)
T d1r5aa2          70 LSYLVSA   76 (85)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776554

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.06  E-value=1.5  Score=27.31  Aligned_cols=73  Identities=5%  Similarity=-0.024  Sum_probs=45.9

Q ss_pred             EEEEEcCCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-hHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHH
Q psy15246         22 VVHFYADWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-KLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKK  100 (213)
Q Consensus        22 vV~F~a~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~  100 (213)
                      +-.|..++|+.|++.+-.+++.     +-.+....||....+ ++.+......+|++.. .+|..+.     .+..|.++
T Consensus        20 ~~Ly~~~~sP~~~rv~~~l~~k-----gi~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~-~dg~~i~-----eS~aI~~Y   88 (98)
T d1eema2          20 IRIYSMRFCPFAERTRLVLKAK-----GIRHEVININLKNKPEWFFKKNPFGLVPVLEN-SQGQLIY-----ESAITCEY   88 (98)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCEEEEEBCTTSCCGGGGGTCTTCCSCEEEE-TTCCEEE-----SHHHHHHH
T ss_pred             EEEEcCCCChHHHHHHHHHHHh-----CCCCEEEEecccCCcHHHHhhhccccceeEEe-CCCCEEc-----CHHHHHHH
Confidence            4557889999999988666663     213556667765443 3444445568999863 3454331     34468888


Q ss_pred             HHHHh
Q psy15246        101 LQNQA  105 (213)
Q Consensus       101 i~~~~  105 (213)
                      |++..
T Consensus        89 L~e~~   93 (98)
T d1eema2          89 LDEAY   93 (98)
T ss_dssp             HHHHS
T ss_pred             HHHHC
Confidence            87763

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.36  E-value=1.9  Score=26.19  Aligned_cols=66  Identities=5%  Similarity=-0.037  Sum_probs=43.8

Q ss_pred             CCCHHHHhHHHHHHHHHHHcCCCcEEEEEEeCCCch-hHHHhCCCccccEEEEEeCCCCcccccCCCchhHHHHHHHHh
Q psy15246         28 DWSDECKHMNTLFDEMSKQSKYSQVVFARCIAEDLP-KLSLNYKVSAVPTFVILKNLKPVDRVEGADPESLDKKLQNQA  105 (213)
Q Consensus        28 ~wC~~C~~~~~~~~~l~~~~~~~~v~~~~vd~~~~~-~l~~~~~I~~~Pti~~~~~g~~~~~~~g~~~~~l~~~i~~~~  105 (213)
                      ..||.|++.+-.+++..-     .+....||....+ ++.+...-..+|++..  +|..+.     .+..|.++|++..
T Consensus        17 ~~cPf~~rv~~~L~~kgi-----~~~~~~v~~~~~~~~~~~~nP~~~vPvL~~--~~~~i~-----eS~~I~~YLee~~   83 (86)
T d1k0ma2          17 GNCPFSQRLFMVLWLKGV-----TFNVTTVDTKRRTETVQKLCPGGELPFLLY--GTEVHT-----DTNKIEEFLEAVL   83 (86)
T ss_dssp             CSCHHHHHHHHHHHHHTC-----CCEEEEECTTSCCHHHHHHCTTCCSSEEEE--TTEEEE-----CHHHHHHHHHHHS
T ss_pred             CCCHhHHHHHHHHHHHCC-----CcEEEEeecccccHHHHHHhccCceeEEEE--cccccc-----cHHHHHHHHHHHc
Confidence            479999998877766432     3446667876544 4555556778999873  554332     4456888887764