Psyllid ID: psy15258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLVTSNSQSQ
Secondary Structure (PSIPRED)
ccHHHHHHHHcccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccEEcccccHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccEEEEccccccccEEEEcccccccccccccccHHHHHHHHHHccccEEcccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHcHHHHHHHHHHHHHHHHcccccEccEccccccccc
Coil and Loop (DISEMBL)
MDPAEIEFIaedqnveiipkfnhlNLIHlisgdvgpfragipakvPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDigaddipnvDLIRTLIKDIWDLRISKLRSSIDTFvksggghatlnhLTQFEINSIRNILCDVLDtmsslkdkqcdvdVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFvksggghatlnhLTQFEINSIRNILCDVLDtmsslkdkqcdvDVTLVTSNSQSQ
Flexible Loop (DISEMBL)
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLetlteikeeekkSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSlkdkqcdvDVTLVTSNSQSQ
Low Complexity Region (SEG)
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNletlteikeeekkSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLVTSNSQSQ
Disordered region (IsUnstruct)
******EFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTL********
Disordered Region (DISOPRED)
*DPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEK****FIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM***********************LIKDIWDLRISKLRSSI***VKSGGGHATLNHLTQFEINSIRNILCDVLDTM**********************
Disordered Region (DISEMBL)
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLVTSNSQSQ
Disordered Region (DISPRO)
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDK****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLVTSNSQSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q9D600	185	DNA replication complex G	yes	N/A	0.645	0.924	0.523	3e-48
Q7ZT46	185	DNA replication complex G	N/A	N/A	0.645	0.924	0.505	4e-48
Q9Y248	185	DNA replication complex G	yes	N/A	0.645	0.924	0.517	4e-48
Q9VQY9	203	Probable DNA replication	yes	N/A	0.645	0.842	0.517	8e-43
Q9C7A8	210	DNA replication complex G	yes	N/A	0.656	0.828	0.367	1e-30
O62193	180	Probable DNA replication	yes	N/A	0.603	0.888	0.388	6e-30
Q8IHI1	190	Probable DNA replication	N/A	N/A	0.6	0.836	0.370	3e-29
P0CQ30	185	DNA replication complex G	yes	N/A	0.501	0.718	0.382	1e-23
P0CQ31	185	DNA replication complex G	N/A	N/A	0.501	0.718	0.382	1e-23
Q54BL9	223	Probable DNA replication	yes	N/A	0.581	0.690	0.376	1e-21

>sp|Q9D600|PSF2_MOUSE DNA replication complex GINS protein PSF2 OS=Mus musculus GN=Gins2 PE=1 SV=1

 Score =  192 bits (487), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 124/172 (72%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P  VPLWLAINLKQRQKCR
Sbjct: 1   MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L+ P WM++E L ++++EE+K   F  +PS HYME++ ++L+  +D+IP  D IRTLIKD
Sbjct: 60  LLPPEWMDVEKLEQMRDEERKEETFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           +WD R++KLR S D+FV+    HA L++LT  EI+S    L   L+ M  L+
Sbjct: 120 LWDTRMAKLRVSADSFVRQQEAHAKLDNLTLMEISSSGAFLTQALNHMYKLR 171

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS complex seems to bind preferentially to single-stranded DNA.
Mus musculus (taxid: 10090)

>sp|Q7ZT46|PSF2_XENLA DNA replication complex GINS protein PSF2 OS=Xenopus laevis GN=gins2 PE=2 SV=1

 Score =  191 bits (486), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 123/172 (71%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD +E+EF+AE + V +IP F+ L+ ++LI GD+GPF   +P +VPLWLAINLKQRQKCR
Sbjct: 1   MDASEVEFLAEKEQVTVIPNFS-LDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V P WM++E L  I+++E++   F  MPS +YME++ ++L+  AD+IP  D IRTL+KD
Sbjct: 60  IVPPEWMDVEKLEAIRDQERREETFTPMPSPYYMELTKLLLNHAADNIPKADEIRTLVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
            WD RI+KLR S D+FVK    HA L++LT  EIN+I     + L+ M  L+
Sbjct: 120 TWDTRIAKLRLSADSFVKGQEAHAKLDNLTLMEINTIGTFFTESLNHMYKLR 171

The GINS complex plays an essential role in the initiation of DNA replication.

Xenopus laevis (taxid: 8355)

>sp|Q9Y248|PSF2_HUMAN DNA replication complex GINS protein PSF2 OS=Homo sapiens GN=GINS2 PE=1 SV=1

 Score =  191 bits (485), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 124/172 (72%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 1   MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L+ P WM++E L ++++ E+K   F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct: 60  LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           +WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct: 120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 171

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS complex seems to bind preferentially to single-stranded DNA.

Homo sapiens (taxid: 9606)

>sp|Q9VQY9|PSF2_DROME Probable DNA replication complex GINS protein PSF2 OS=Drosophila melanogaster GN=Psf2 PE=2 SV=1

 Score =  174 bits (440), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 126/172 (73%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+ IEFI E   + IIP F++  L HLI G VGPFRAG P  VPLW+A +L+++QKCR
Sbjct: 1   MDPSIIEFIGEKCMISIIPNFSNEPL-HLIYGPVGPFRAGFPVFVPLWMATHLRKQQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V P WM+++ L EIKEEEK+S+FF KMP +HYM ++ +++    DD+P  + +RT+IKD
Sbjct: 60  IVPPEWMDMDILEEIKEEEKRSKFFTKMPCEHYMVVAQLVMSTAPDDVPRCEELRTVIKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           I+D+R SKLR+SID F+K  G +A L++LT  EI+S+R IL   LD ++  +
Sbjct: 120 IFDIRESKLRTSIDAFIKGEGTYAKLDNLTLLEIHSVRPILPYSLDHIARYQ 171

The GINS complex plays an essential role in the initiation of DNA replication.

Drosophila melanogaster (taxid: 7227)

>sp|Q9C7A8|PSF2_ARATH DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana GN=GINS2 PE=2 SV=2

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 110/177 (62%), Gaps = 3/177 (1%)

Query: 3   PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
           P E+EF+AED+ VEI+P  N +  ++ ISGD G F   IP KVPLWLA+ LK+R KC   
Sbjct: 14  PQEVEFMAEDELVEIVPNMN-MEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFR 72

Query: 63  LPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIW 122
            P WM+++ LT+I E E++S+   +     Y+E++ ++ D   DDIP++ ++R+L++DI 
Sbjct: 73  PPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPDMYMVRSLVEDIR 132

Query: 123 DLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVD 179
           D+R+ KL +++ +F   G     +++++  E+N +R  +   L+        + DVD
Sbjct: 133 DVRLHKLETNLGSF--QGTSAVKISNVSAMEVNIVRPFVIRALEAFYKHDKPEADVD 187

The GINS complex plays an essential role in the initiation of DNA replication.

Arabidopsis thaliana (taxid: 3702)

>sp|O62193|PSF2_CAEEL Probable DNA replication complex GINS protein PSF2 OS=Caenorhabditis elegans GN=F31C3.5 PE=3 SV=1

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 105/162 (64%), Gaps = 2/162 (1%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           M+    EFIA +  +E+IP  +    IHLISGD+GPF AG+P ++P+W AI +K++  C+
Sbjct: 1   MNAERCEFIAGNSLIEVIPSISDDRPIHLISGDIGPFEAGVPCRIPVWTAILMKRKHNCK 60

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V P WM+++ L +I   E +S+   K+P DH+ E+SH+++    +DI  V+ +++L++D
Sbjct: 61  VVAPQWMDVDELKKILTSETESQGLAKLP-DHFFEISHMLVRDAREDIFEVEAVKSLVQD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGG-HATLNHLTQFEINSIRNIL 161
           I+D R +KLRSS   F++     HA L+++   E +S R  L
Sbjct: 120 IYDRRDAKLRSSAIEFLRQNQTCHAQLDNVQLIEASSARATL 161

The GINS complex plays an essential role in the initiation of DNA replication.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8IHI1|PSF2_BRUMA Probable DNA replication complex GINS protein PSF2 OS=Brugia malayi GN=BMBAC01P19.06 PE=3 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 106/162 (65%), Gaps = 3/162 (1%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           M P + EFIA ++ ++I P+FN L+ +HLI GD+GPF AG+P  VPLW+A+ L++R+KC 
Sbjct: 1   MTPEQCEFIAGNEWIQINPQFN-LDELHLICGDIGPFEAGMPIWVPLWIAVTLRKRRKCT 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           ++ P W+ +E L ++   E  +  F ++P   Y+E++H+ +    +D+P+ D+IR  ++D
Sbjct: 60  IIPPQWLCVEELKKLVIAESGTNAFGQVPR-FYLEIAHMFVQYAKEDLPDSDMIRVYVQD 118

Query: 121 IWDLRISKLRSSIDTFV-KSGGGHATLNHLTQFEINSIRNIL 161
           +WD R +KL +S   F+ +    HA ++++T  E+  I+  L
Sbjct: 119 LWDKRSAKLNNSSTKFLGQVESCHARMDNITLMEVAYIKRSL 160

The GINS complex plays an essential role in the initiation of DNA replication.

Brugia malayi (taxid: 6279)

>sp|P0CQ30|PSF2_CRYNJ DNA replication complex GINS protein PSF2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PSF2 PE=3 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 93/136 (68%), Gaps = 3/136 (2%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           + P E+ F+AE  ++ I+P F+ +  + LISG  GPFR    ++VPLWL ++LK+++KCR
Sbjct: 11  LTPDELAFLAEHDHISIVPLFS-MTRVRLISGIYGPFRPPSASRVPLWLGLSLKKKRKCR 69

Query: 61  LVLPTWMNLETLTE-IKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIK 119
           +V P W++ E L   +++E++ S  F ++P   +ME+S ++LDI +DD+    L+R+L+K
Sbjct: 70  IVPPEWLSAERLQAFLRDEKENSEGFERLPR-RFMEISKVLLDIASDDLSQPTLLRSLLK 128

Query: 120 DIWDLRISKLRSSIDT 135
           DI ++R +K+R  + +
Sbjct: 129 DIREVRQAKIRMGLQS 144

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CQ31|PSF2_CRYNB DNA replication complex GINS protein PSF2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PSF2 PE=3 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 93/136 (68%), Gaps = 3/136 (2%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           + P E+ F+AE  ++ I+P F+ +  + LISG  GPFR    ++VPLWL ++LK+++KCR
Sbjct: 11  LTPDELAFLAEHDHISIVPLFS-MTRVRLISGIYGPFRPPSASRVPLWLGLSLKKKRKCR 69

Query: 61  LVLPTWMNLETLTE-IKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIK 119
           +V P W++ E L   +++E++ S  F ++P   +ME+S ++LDI +DD+    L+R+L+K
Sbjct: 70  IVPPEWLSAERLQAFLRDEKENSEGFERLPR-RFMEISKVLLDIASDDLSQPTLLRSLLK 128

Query: 120 DIWDLRISKLRSSIDT 135
           DI ++R +K+R  + +
Sbjct: 129 DIREVRQAKIRMGLQS 144

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q54BL9|PSF2_DICDI Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium discoideum GN=gins2 PE=3 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 95/162 (58%), Gaps = 8/162 (4%)

Query: 3   PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
           P++IEF+AED  + ++P F   +LI L SG+ GPF    P ++PLWLAI+LK+++KC + 
Sbjct: 8   PSQIEFLAEDTTITVVPNFKMESLIFL-SGEYGPFVPSFPIEIPLWLAISLKKKKKCTIT 66

Query: 63  LPTWMNLETL-TEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDI 121
            P WM    L  + +EE K    FI++P +++ E+S ++L    DDI +++ IR L  DI
Sbjct: 67  PPDWMTYNKLKAKFQEENKIKDGFIELP-ENFDEISSLLLANCPDDIKDINKIRILKGDI 125

Query: 122 WDLRISKLRSSIDTFVKS---GGGHATL--NHLTQFEINSIR 158
              R  KL  S+ + + S   G    T+   + +  EIN IR
Sbjct: 126 LSRREKKLEESLKSHLNSLTDGESVTTMEFKNFSMMEINKIR 167

The GINS complex plays an essential role in the initiation of DNA replication.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
340711251	188	PREDICTED: probable DNA replication comp	0.630	0.888	0.607	2e-56
307170552	186	DNA replication complex GINS protein PSF	0.630	0.897	0.595	4e-54
321469936	192	hypothetical protein DAPPUDRAFT_50715 [D	0.645	0.890	0.563	3e-53
156553960	187	PREDICTED: probable DNA replication comp	0.630	0.893	0.571	4e-53
307212057	183	Probable DNA replication complex GINS pr	0.690	1.0	0.554	6e-53
380023290	173	PREDICTED: DNA replication complex GINS	0.630	0.965	0.577	6e-53
357613691	196	putative DNA replication complex GINS pr	0.645	0.872	0.563	2e-52
328778778	247	PREDICTED: DNA replication complex GINS	0.630	0.676	0.559	6e-52
405963795	183	DNA replication complex GINS protein PSF	0.645	0.934	0.558	7e-52
332030489	185	Putative DNA replication complex GINS pr	0.675	0.967	0.532	2e-51

>gi|340711251|ref|XP_003394192.1| PREDICTED: probable DNA replication complex GINS protein PSF2-like [Bombus terrestris]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 135/168 (80%), Gaps = 1/168 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EFI E + V I+P F+  ++IHLISG VGPFRAG+P KVP+WLA+NLKQ+QKCR
Sbjct: 1   MDPSEVEFIGEKELVTIVPNFS-FDMIHLISGSVGPFRAGLPVKVPIWLAVNLKQQQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V   WM+++ L E KEEEK S+ FIKMPS+HYME + ++L++G+DDIP+ D I+T +KD
Sbjct: 60  IVNQDWMDVDGLNETKEEEKLSKLFIKMPSNHYMEEAQLLLNVGSDDIPDADRIKTAVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
           IWD+R+SKLR+SID F+KS G HA L+HLT  EINS+R +L   LD M
Sbjct: 120 IWDIRMSKLRTSIDAFLKSEGLHAKLDHLTAMEINSVRPLLPHALDQM 167

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170552|gb|EFN62760.1| DNA replication complex GINS protein PSF2 [Camponotus floridanus]

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 133/168 (79%), Gaps = 1/168 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP++IEF+ E Q V I+P FN L++I+LISG VGPFRAG+P KVP+WLA++LKQ+QKCR
Sbjct: 1   MDPSKIEFLGEKQLVNIVPNFN-LDIIYLISGSVGPFRAGLPVKVPIWLAVSLKQKQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           ++   WMN+E+L + KE EK S+ F +MPS+HY++ S I+L++  DDIP+ D IRT +KD
Sbjct: 60  IINQEWMNIESLNDRKEMEKMSKLFTEMPSNHYIDESQILLNVANDDIPDADRIRTSVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
           IWD+R+SKLR+S+D FVKS G HA L+HLT  EINSIR +L   LD M
Sbjct: 120 IWDIRMSKLRTSVDAFVKSEGVHARLDHLTAMEINSIRPLLPHALDQM 167

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469936|gb|EFX80914.1| hypothetical protein DAPPUDRAFT_50715 [Daphnia pulex]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 129/172 (75%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           M+PAE+EF+AE+Q+++I P F+H + ++LI G+VGPFR GIP +VPLW+AINLKQRQKCR
Sbjct: 1   MNPAEVEFLAENQSIQITPNFSH-DRLYLICGEVGPFRPGIPVQVPLWMAINLKQRQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L  P WM +ETLT+IKE+E +S+ F  MP  HYM  + +IL     DIPN D IR L+KD
Sbjct: 60  LTAPEWMTVETLTKIKEDEGQSKTFTPMPDQHYMVTTQLILGAAPHDIPNTDEIRILVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           IWD+RI+KLRSS+D F+K GG  A ++HLT  EIN++R  L   LD +  L+
Sbjct: 120 IWDMRIAKLRSSVDAFLKIGGSLAKVDHLTLMEINTVRPFLPHALDQLFRLR 171

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553960|ref|XP_001602753.1| PREDICTED: probable DNA replication complex GINS protein PSF2-like [Nasonia vitripennis]

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 133/168 (79%), Gaps = 1/168 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EF+ E Q V I+P F+   +IHLISG +GPFRAG+P +VP+W+A++LKQ+QKCR
Sbjct: 1   MDPSEVEFLGEKQLVSIVPNFS-FGVIHLISGSIGPFRAGLPVRVPIWIALSLKQQQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V   WM++E LTEI EEEK+S+ F +MP++H+M+ + ++L    DDIP+VD IRT+IK 
Sbjct: 60  IVAQEWMDMEKLTEILEEEKQSKLFTRMPNNHFMDEAQMLLTAAPDDIPDVDNIRTIIKX 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
           IWDLR++KLRSS+  FVK+ G +A L+HLT  EINSIR++L D LD M
Sbjct: 120 IWDLRMAKLRSSVIGFVKNEGTYAKLDHLTAMEINSIRSLLPDALDIM 167

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212057|gb|EFN87940.1| Probable DNA replication complex GINS protein PSF2 [Harpegnathos saltator]

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 133/184 (72%), Gaps = 1/184 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EF+ E Q V IIP FN L++IHLISG VGPFRAG+P KVP+WLA+ LKQ+QKCR
Sbjct: 1   MDPSEVEFLGEKQLVSIIPNFN-LDVIHLISGSVGPFRAGLPVKVPIWLAVCLKQKQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           ++   WM +E L E KE EK S+ F +MPS HY++ S I+L  G DDIP+ D IR  +KD
Sbjct: 60  IINQEWMEVENLNERKEMEKMSKLFTEMPSYHYIDESQILLSTGNDDIPDADGIRIAVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDV 180
           IWD+R+SKLR+S+D FVK+ G HA L+HLT  EIN IR +L   LD M  ++    D+++
Sbjct: 120 IWDIRMSKLRTSMDAFVKNEGVHARLDHLTAMEINGIRPLLPHALDQMLRIQSVSIDLEI 179

Query: 181 TLQL 184
              L
Sbjct: 180 GFHL 183

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023290|ref|XP_003695457.1| PREDICTED: DNA replication complex GINS protein PSF2-like, partial [Apis florea]

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 128/168 (76%), Gaps = 1/168 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EF+ E + V I+P F+  + IHLISG VGPFRAG+P KVP+WLA+NLKQ+QKCR
Sbjct: 1   MDPSEVEFLGEKELVTIVPNFS-FDTIHLISGSVGPFRAGLPVKVPIWLAVNLKQQQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           ++   WMN E+L E KEEEK S+ F KMPS+HY++ + ++L   +DDI   D IRT +KD
Sbjct: 60  IINQEWMNAESLNEAKEEEKLSKLFTKMPSNHYVDETQLLLSAASDDIHEADNIRTAVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
           +WD+R+SKLR+SID F+KS G HA L+HLT  EINS+R +L   LD M
Sbjct: 120 LWDIRMSKLRTSIDAFLKSDGMHAKLDHLTAMEINSVRPLLPHALDQM 167

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613691|gb|EHJ68662.1| putative DNA replication complex GINS protein pSF2 [Danaus plexippus]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 130/172 (75%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP EIEFI E++ V IIP F++ + I+LI G+ GPFRAG+P  VPLWLA+ LKQ+QKCR
Sbjct: 1   MDPYEIEFIGENRIVSIIPNFSY-DKIYLICGEFGPFRAGLPMNVPLWLAVMLKQKQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V P WM++E L  IKEEEKKSRFF KMP++HYM  + +IL    +DIP    I+T+IKD
Sbjct: 60  IVPPDWMDIEILEGIKEEEKKSRFFTKMPNEHYMVEAKLILGAANEDIPRAAEIKTIIKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           IWD+R+SKLR+S+D  +KSGG +  L+HLT  EINS++ IL + +D +  +K
Sbjct: 120 IWDIRMSKLRTSMDALMKSGGSYGRLDHLTMMEINSVKPILPEAMDELYRIK 171

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778778|ref|XP_392289.2| PREDICTED: DNA replication complex GINS protein PSF2 [Apis mellifera]

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 128/168 (76%), Gaps = 1/168 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EF+ E + V ++P F+  + IHLISG VGPFRAG+P K+P+WLA+NLKQ+QKCR
Sbjct: 1   MDPSEVEFLGEKELVTVVPNFS-FDTIHLISGSVGPFRAGLPVKIPIWLAVNLKQQQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           ++   WM+ E+L E KEEEK S+ F KMPS+HY++ + ++L   +DDI   D IRT +KD
Sbjct: 60  IINQDWMDAESLNEAKEEEKLSKLFTKMPSNHYVDETQLLLSAASDDIHEADKIRTAVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTM 168
           +WD+R+SKLR+SID F+KS G HA L+HLT  EINS+R +L   LD M
Sbjct: 120 LWDIRMSKLRTSIDAFLKSDGMHAKLDHLTAMEINSVRPLLPHALDQM 167

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405963795|gb|EKC29341.1| DNA replication complex GINS protein PSF2 [Crassostrea gigas]

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 96/172 (55%), Positives = 128/172 (74%), Gaps = 1/172 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MDP+E+EF+AE + V ++P F  L+ I+LI GD+GP   G+P +VPLW+A+NLKQ QKCR
Sbjct: 1   MDPSEVEFLAEKEFVTVVPNFA-LDKIYLIGGDIGPLTPGLPVQVPLWMAVNLKQGQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V P WM+++ L + K+EE  S+FF KMP DHY+E++ ++L    DDIP+ D IRTL+KD
Sbjct: 60  IVPPEWMDIDRLQDKKQEETDSKFFTKMPCDHYIEVTQLLLKSATDDIPHADEIRTLVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           IWDLRI+KLRSSIDTFVKS   HA LN LT  E+N++R  L   LD M  L+
Sbjct: 120 IWDLRIAKLRSSIDTFVKSDATHAKLNFLTLMELNTVRPFLTKALDQMHVLR 171

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|332030489|gb|EGI70177.1| Putative DNA replication complex GINS protein PSF2 [Acromyrmex echinatior]

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/186 (53%), Positives = 134/186 (72%), Gaps = 7/186 (3%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           M+P+E+EF+ E Q V I+P FN  ++I+LISG VGPFRAG+P +VP+WLA+ LKQ+QKCR
Sbjct: 1   MNPSEVEFLGEKQLVSIVPNFNS-DIIYLISGSVGPFRAGLPVRVPIWLAVCLKQKQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           +V   WM++E L E KE EK S+ F +MPS HYM+ S I+L++  DDIP+ D IR  +KD
Sbjct: 60  IVSQEWMDIEGLNERKEMEKMSKLFTEMPSSHYMDESQILLNVANDDIPDADGIRIAVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLD------TMSSLKDK 174
           IWD+R+SKLR+S+D FVKS G HA L+HLT  EIN IR +L   LD      +M  +  +
Sbjct: 120 IWDIRMSKLRTSVDAFVKSEGVHARLDHLTAMEINGIRPLLPHALDQILRIQSMKQIPSR 179

Query: 175 QCDVDV 180
             +V+V
Sbjct: 180 VVEVEV 185

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
ZFIN|ZDB-GENE-050419-19	182	gins2 "GINS complex subunit 2"	0.645	0.939	0.488	3.6e-41
UNIPROTKB|Q7ZT46	185	gins2 "DNA replication complex	0.645	0.924	0.482	4.2e-40
UNIPROTKB|Q9Y248	185	GINS2 "DNA replication complex	0.645	0.924	0.494	4.2e-40
RGD|1311055	185	Gins2 "GINS complex subunit 2	0.645	0.924	0.494	6.8e-40
UNIPROTKB|E2QU81	185	GINS2 "DNA replication complex	0.645	0.924	0.482	1.1e-39
UNIPROTKB|E1BC42	185	GINS2 "DNA replication complex	0.645	0.924	0.488	1.1e-39
MGI|MGI:1921019	185	Gins2 "GINS complex subunit 2	0.645	0.924	0.494	1.1e-39
UNIPROTKB|F1S6I3	185	GINS2 "DNA replication complex	0.645	0.924	0.476	1.6e-38
FB|FBgn0261976	203	Psf2 "Psf2" [Drosophila melano	0.622	0.812	0.487	4.3e-38
WB|WBGene00009287	180	F31C3.5 [Caenorhabditis elegan	0.603	0.888	0.370	4.5e-27

ZFIN|ZDB-GENE-050419-19 gins2 "GINS complex subunit 2" [Danio rerio (taxid:7955)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 84/172 (48%), Positives = 118/172 (68%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MDPAE+EF+AE + V+IIP F+ L+ I+LI GD+GPF  G+P +VP+WLA+NLKQRQKCR
Sbjct:     1 MDPAEVEFLAEKEMVKIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPVWLALNLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             +V P WM+                F  +P+ +YME++ ++L+  AD+IP  D IRTL+KD
Sbjct:    60 IVPPEWMDTDKLEDIREQERKLDTFTPIPNPYYMELTKLLLNHAADNIPKADEIRTLVKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             IWD R++KLR S D+F+     HA L++LT  EIN+ R+ L D L+ M  L+
Sbjct:   120 IWDTRMAKLRLSADSFISQQEAHAQLDNLTLMEINTTRSFLLDSLNYMYKLR 171

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q7ZT46 gins2 "DNA replication complex GINS protein PSF2" [Xenopus laevis (taxid:8355)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 83/172 (48%), Positives = 113/172 (65%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD +E+EF+AE + V +IP F+ L+ ++LI GD+GPF   +P +VPLWLAINLKQRQKCR
Sbjct:     1 MDASEVEFLAEKEQVTVIPNFS-LDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             +V P WM+                F  MPS +YME++ ++L+  AD+IP  D IRTL+KD
Sbjct:    60 IVPPEWMDVEKLEAIRDQERREETFTPMPSPYYMELTKLLLNHAADNIPKADEIRTLVKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
              WD RI+KLR S D+FVK    HA L++LT  EIN+I     + L+ M  L+
Sbjct:   120 TWDTRIAKLRLSADSFVKGQEAHAKLDNLTLMEINTIGTFFTESLNHMYKLR 171

GO:0000811 "GINS complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=IMP

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=IDA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IDA

UNIPROTKB|Q9Y248 GINS2 "DNA replication complex GINS protein PSF2" [Homo sapiens (taxid:9606)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 85/172 (49%), Positives = 114/172 (66%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct:    60 LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct:   120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 171

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|1311055 Gins2 "GINS complex subunit 2 (Psf2 homolog)" [Rattus norvegicus (taxid:10116)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 85/172 (49%), Positives = 113/172 (65%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P  VPLWLAINLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F  +PS HYME++ ++L+  +D+IP  D IRTLIKD
Sbjct:    60 LLPPEWMDVEKLEQMRDEERKEETFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD R++KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct:   120 LWDTRMAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGAFLTQALNHMYKLR 171

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QU81 GINS2 "DNA replication complex GINS protein PSF2" [Canis lupus familiaris (taxid:9615)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 83/172 (48%), Positives = 115/172 (66%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ ++ ++LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-VDKMYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct:    60 LIPPEWMDVEKLEKIRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD RI+KLR S D+FV+    HA L++LT  EI+S    L + L+ M  L+
Sbjct:   120 VWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEISSSGPFLTEALNHMYKLR 171

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E1BC42 GINS2 "DNA replication complex GINS protein PSF2" [Bos taurus (taxid:9913)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 84/172 (48%), Positives = 113/172 (65%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLA+NLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVQVPLWLAVNLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F  MPS +YME++ ++L+  +D+IP  D IRTLIKD
Sbjct:    60 LLPPEWMDVEKLEKIRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLIKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD RI+K R S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct:   120 VWDTRIAKFRVSADSFVRQQEAHAKLDNLTLMEINTSGAFLTQALNHMYKLR 171

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

MGI|MGI:1921019 Gins2 "GINS complex subunit 2 (Psf2 homolog)" [Mus musculus (taxid:10090)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 85/172 (49%), Positives = 113/172 (65%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P  VPLWLAINLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F  +PS HYME++ ++L+  +D+IP  D IRTLIKD
Sbjct:    60 LLPPEWMDVEKLEQMRDEERKEETFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD R++KLR S D+FV+    HA L++LT  EI+S    L   L+ M  L+
Sbjct:   120 LWDTRMAKLRVSADSFVRQQEAHAKLDNLTLMEISSSGAFLTQALNHMYKLR 171

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1S6I3 GINS2 "DNA replication complex GINS protein PSF2" [Sus scrofa (taxid:9823)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 82/172 (47%), Positives = 111/172 (64%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct:     1 MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVQVPLWLAINLKQRQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             L+ P WM+                F   P+ HY E++ ++L+  +D+IP  D IRTLIKD
Sbjct:    60 LLAPEWMDVEKLEKMRDHERKEDTFTPAPNPHYTELTKLLLNHASDNIPKADEIRTLIKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
             +WD R++KLR S D+FV+    HA L++LT  E+N+    L   L  M  L+
Sbjct:   120 VWDTRVAKLRVSADSFVRQQEAHAKLDNLTLMEVNAGGAFLTRALSHMFKLR 171

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

FB|FBgn0261976 Psf2 "Psf2" [Drosophila melanogaster (taxid:7227)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 81/166 (48%), Positives = 112/166 (67%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             MDP+ IEFI E   + IIP F++  L HLI G VGPFRAG P  VPLW+A +L+++QKCR
Sbjct:     1 MDPSIIEFIGEKCMISIIPNFSNEPL-HLIYGPVGPFRAGFPVFVPLWMATHLRKQQKCR 59

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             +V P WM+             S+FF KMP +HYM ++ +++    DD+P  + +RT+IKD
Sbjct:    60 IVPPEWMDMDILEEIKEEEKRSKFFTKMPCEHYMVVAQLVMSTAPDDVPRCEELRTVIKD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLD 166
             I+D+R SKLR+SID F+K  G +A L++LT  EI+S+R IL   LD
Sbjct:   120 IFDIRESKLRTSIDAFIKGEGTYAKLDNLTLLEIHSVRPILPYSLD 165

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0000811 "GINS complex" evidence=IDA

GO:0043138 "3'-5' DNA helicase activity" evidence=IDA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

GO:0030261 "chromosome condensation" evidence=IMP

WB|WBGene00009287 F31C3.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 60/162 (37%), Positives = 98/162 (60%)

Query:     1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
             M+    EFIA +  +E+IP  +    IHLISGD+GPF AG+P ++P+W AI +K++  C+
Sbjct:     1 MNAERCEFIAGNSLIEVIPSISDDRPIHLISGDIGPFEAGVPCRIPVWTAILMKRKHNCK 60

Query:    61 LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
             +V P WM+             S+   K+P DH+ E+SH+++    +DI  V+ +++L++D
Sbjct:    61 VVAPQWMDVDELKKILTSETESQGLAKLP-DHFFEISHMLVRDAREDIFEVEAVKSLVQD 119

Query:   121 IWDLRISKLRSSIDTFVKSGGG-HATLNHLTQFEINSIRNIL 161
             I+D R +KLRSS   F++     HA L+++   E +S R  L
Sbjct:   120 IYDRRDAKLRSSAIEFLRQNQTCHAQLDNVQLIEASSARATL 161

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O62193	PSF2_CAEEL	No assigned EC number	0.3888	0.6037	0.8888	yes	N/A
Q9VQY9	PSF2_DROME	No assigned EC number	0.5174	0.6452	0.8423	yes	N/A
Q6BZ44	PSF2_DEBHA	No assigned EC number	0.3121	0.6264	0.8058	yes	N/A
Q9C7A8	PSF2_ARATH	No assigned EC number	0.3672	0.6566	0.8285	yes	N/A
O94329	PSF2_SCHPO	No assigned EC number	0.3254	0.6188	0.8961	yes	N/A
Q9Y248	PSF2_HUMAN	No assigned EC number	0.5174	0.6452	0.9243	yes	N/A
Q9D600	PSF2_MOUSE	No assigned EC number	0.5232	0.6452	0.9243	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	265
cd11712	119	cd11712, GINS_A_psf2, Alpha-helical domain of GINS	9e-45
COG5093	185	COG5093, COG5093, Uncharacterized conserved protei	1e-25
cd11712	119	cd11712, GINS_A_psf2, Alpha-helical domain of GINS	3e-18
pfam05916	106	pfam05916, Sld5, GINS complex protein	2e-15
pfam05916	106	pfam05916, Sld5, GINS complex protein	0.003

>gnl|CDD|212550 cd11712, GINS_A_psf2, Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)

 Score =  146 bits (371), Expect = 9e-45
 Identities = 55/119 (46%), Positives = 80/119 (67%), Gaps = 1/119 (0%)

Query: 56  RQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIR 115
           R KCR+V P W+ +E L EI EEEKKS  F  +P  HY+E++ ++L++ +DDIP+ D IR
Sbjct: 1   RNKCRIVPPDWLTVEYLKEILEEEKKSETFSPLP-FHYLEIAKLLLEVASDDIPDADEIR 59

Query: 116 TLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDK 174
           +L++DI D+R +KLRS ++  + SG  HA L++LT  EIN IR  L   LD +  L+  
Sbjct: 60  SLVEDIRDVRQAKLRSGLEKLLGSGEVHAKLDNLTAMEINEIRPFLSGALDKLRKLRAS 118

Psf2 is a component of GINS tetrameric protein complex and has been found to play important roles in normal eye development in Xenopus laevis. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3. Length = 119

>gnl|CDD|227424 COG5093, COG5093, Uncharacterized conserved protein [Function unknown]

 Score = 99.2 bits (247), Expect = 1e-25
 Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 5/172 (2%)

Query: 3   PAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV 62
           P EI FIA ++ +EI P      L  L      P      A+VPLW A+ LK++  C++V
Sbjct: 13  PEEILFIAYNELIEIEPMTTIPQLRLLERATYPPMMPLDIARVPLWAALLLKKQNMCKIV 72

Query: 63  LPTWMNLETL-TEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDI 121
           LP+W+ LE+L   I  E +K+  F ++P  +++ ++  +L+   DD+ +++  R +++DI
Sbjct: 73  LPSWLQLESLKMSIDVEIEKADEFSELPP-YWLPLATELLNENCDDVEDIEESRMIVEDI 131

Query: 122 WDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKD 173
            ++R +K    +            L++LT FEIN IR ++ + +D    ++D
Sbjct: 132 REIRQAKTLKGLKCL---NEKALNLDNLTLFEINEIRPLILESMDVGRRIED 180

Length = 185

>gnl|CDD|212550 cd11712, GINS_A_psf2, Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)

 Score = 77.6 bits (192), Expect = 3e-18
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query: 185 NVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMS 244
           + D IR+L++DI D+R +KLRS ++  + SG  HA L++LT  EIN IR  L   LD + 
Sbjct: 54  DADEIRSLVEDIRDVRQAKLRSGLEKLLGSGEVHAKLDNLTAMEINEIRPFLSGALDKLR 113

Query: 245 SLKDK 249
            L+  
Sbjct: 114 KLRAS 118

Psf2 is a component of GINS tetrameric protein complex and has been found to play important roles in normal eye development in Xenopus laevis. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3. Length = 119

>gnl|CDD|218810 pfam05916, Sld5, GINS complex protein

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 43  AKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRF---FIKMPSDHYMEMSHI 99
            ++PLWLA  L +R    +  P  ++LE L  +K E K         K+P  ++ E++ +
Sbjct: 1   PELPLWLAEELVERVLVEIEAPDELSLEVLNALKAEPKNVDTKLQLSKLPP-YFYELAEL 59

Query: 100 ILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEI 154
           +L++           + L+++   +R+ K+                L++L++ E 
Sbjct: 60  LLELLR--------NKRLLREYLRIRLRKIEKLAWHLAGGNESEDLLDNLSEEER 106

The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3), all of which are included in this family. The GINS complex is conserved from yeast to humans, and has been shown in human to bind directly to DNA primase. Length = 106

>gnl|CDD|218810 pfam05916, Sld5, GINS complex protein

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 182 LQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEI 229
           L L +   + L+++   +R+ K+                L++L++ E 
Sbjct: 59  LLLELLRNKRLLREYLRIRLRKIEKLAWHLAGGNESEDLLDNLSEEER 106

The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3), all of which are included in this family. The GINS complex is conserved from yeast to humans, and has been shown in human to bind directly to DNA primase. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG4071|consensus	187		100.0
COG5093	185	Uncharacterized conserved protein [Function unknow	100.0
PTZ00362	479	hypothetical protein; Provisional	100.0
KOG4071|consensus	187		99.89
PF05916	108	Sld5: GINS complex protein; InterPro: IPR021151 DN	99.77
COG5093	185	Uncharacterized conserved protein [Function unknow	99.64
PTZ00362	479	hypothetical protein; Provisional	99.42
KOG1106|consensus	177		97.27
PF05916	108	Sld5: GINS complex protein; InterPro: IPR021151 DN	94.74
COG5138	168	Uncharacterized conserved protein [Function unknow	93.78

>KOG4071|consensus

Probab=100.00  E-value=2.4e-61  Score=416.91  Aligned_cols=174  Identities=48%  Similarity=0.899  Sum_probs=167.8

Q ss_pred             CChhhhhhhhcCceeEEeeCCccccccccccccccCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhh
Q psy15258          1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEK   80 (265)
Q Consensus         1 m~p~E~eFlAe~e~I~IvP~f~~~~~l~lI~g~~GPF~p~~p~~VPLWlAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E~   80 (265)
                      |+|+|++|+|++++|+|+|+|++ ++++||+|++|||.||.|++||||+|++||||++|+|+||.||+++.|+++++.|+
T Consensus         3 ~~peeiefia~~eli~I~P~~S~-~~l~li~~d~gp~~p~~~~rVpLWlAllLKkq~kc~Iv~P~wm~~~~L~~i~d~E~   81 (187)
T KOG4071|consen    3 MSPEEIEFIAENELIEIIPNISM-DQLHLISGDIGPFNPGVPCRVPLWLALLLKKQNKCRIVPPEWMDVDELEKIRDVEK   81 (187)
T ss_pred             CCHHHHHHHhcccceeeccCCcc-hhhhhhcCCCcccCCCCcceehHHHHHHHhhccCceEeCcccccHHHHHHHHHHhh
Confidence            79999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcceecCCchHHHHHhhHHh
Q psy15258         81 KSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNI  160 (265)
Q Consensus        81 ~~~~Fs~LP~~hy~EiA~lLL~~a~dDi~~~~~ir~Li~DI~evR~~Klr~gl~~~~~~~~~~l~l~NLt~mEin~iR~f  160 (265)
                      .++.|++|| +||+|+|++|+++|.||||+.++||++|+||||+|++|+|+|++.|..  ..|+++||||+||||++|||
T Consensus        82 e~~tfs~lp-~~~~ela~lL~n~a~Ddi~~~eeiR~lV~DI~d~R~aKlr~s~~~f~~--~~hakldNltLmEiN~~rpf  158 (187)
T KOG4071|consen   82 ESETFSKLP-FYYFELATLLLNFARDDIPDIEEIRTLVKDIRDIRLAKLRTSLDSFNR--QAHAKLDNLTLMEINEIRPF  158 (187)
T ss_pred             cccccccCC-hHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhHHHHhh--HhhcCcccceeeeeccchHH
Confidence            988999999 899999999999999999999999999999999999999999999943  36999999999999999999


Q ss_pred             HHHHHHHHhhhhcccccc
Q psy15258        161 LCDVLDTMSSLKDKQCDV  178 (265)
Q Consensus       161 ~~~amd~l~~l~~~~~~~  178 (265)
                      ++++||+++++++++.+.
T Consensus       159 l~~~l~~~~ki~~~s~~~  176 (187)
T KOG4071|consen  159 LTEALDHGRKIRQTSKDQ  176 (187)
T ss_pred             HHHHHHHHHHHhhhhhhc
Confidence            999999999999766533

>COG5093 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.1e-48  Score=328.29  Aligned_cols=171  Identities=29%  Similarity=0.524  Sum_probs=163.6

Q ss_pred             CChhhhhhhhcCceeEEeeCCcccccccccc-ccccCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHh
Q psy15258          1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLIS-GDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEE   79 (265)
Q Consensus         1 m~p~E~eFlAe~e~I~IvP~f~~~~~l~lI~-g~~GPF~p~~p~~VPLWlAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E   79 (265)
                      ++|+|+.|+|++|+|.|+|..++ +.+.|++ .+|+|+.|...++||||+|+.|||+++|+|++|.||+++.|+..++.|
T Consensus        11 fSPEEi~fia~nE~i~I~P~~t~-~qlrL~~~~t~p~m~p~~~~rvpLw~ALlLKkqn~c~Iv~P~wl~~~~L~~~i~~e   89 (185)
T COG5093          11 FSPEEILFIAYNELIEIEPMTTI-PQLRLLERATYPPMMPLDIARVPLWAALLLKKQNMCKIVLPSWLQLESLKMSIDVE   89 (185)
T ss_pred             CCHHHHHHHhcccceeeeccccc-chhhhhhhhcCCCCCCchhhhhHHHHHHHHHhcccccccChhHhhHHHHHhhhhHH
Confidence            48999999999999999999999 8899999 599999999999999999999999999999999999999999988888


Q ss_pred             hc-cCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcceecCCchHHHHHhhH
Q psy15258         80 KK-SRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIR  158 (265)
Q Consensus        80 ~~-~~~Fs~LP~~hy~EiA~lLL~~a~dDi~~~~~ir~Li~DI~evR~~Klr~gl~~~~~~~~~~l~l~NLt~mEin~iR  158 (265)
                      +. .+.||.+| |||++.|+.||+.|.||+.+.+++|..|+||+++|++|.++|++.+   |+.++++||||+||||+||
T Consensus        90 ~~~~d~fSelp-~~wl~lA~~Lln~~~ddvediee~r~iv~dirEiRq~K~lkGlk~l---ne~~L~ldNl~l~EiNEir  165 (185)
T COG5093          90 IEKADEFSELP-PYWLPLATELLNENCDDVEDIEESRMIVEDIREIRQAKTLKGLKCL---NEKALNLDNLTLFEINEIR  165 (185)
T ss_pred             HhcccccccCC-chHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHhhHhhh---hhhhcCccccchhhhhhhH
Confidence            76 89999999 9999999999999999999999999999999999999999999875   8999999999999999999


Q ss_pred             HhHHHHHHHHhhhhcccc
Q psy15258        159 NILCDVLDTMSSLKDKQC  176 (265)
Q Consensus       159 ~f~~~amd~l~~l~~~~~  176 (265)
                      |++.++||.++++.+.+.
T Consensus       166 p~i~e~md~~R~I~~~s~  183 (185)
T COG5093         166 PLILESMDVGRRIEDLSK  183 (185)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            999999999999987654

>PTZ00362 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-43  Score=337.97  Aligned_cols=167  Identities=18%  Similarity=0.301  Sum_probs=144.2

Q ss_pred             hcCceeEEeeCCcccc-ccccccc-cccCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHh-hccCCCC
Q psy15258         10 AEDQNVEIIPKFNHLN-LIHLISG-DVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEE-KKSRFFI   86 (265)
Q Consensus        10 Ae~e~I~IvP~f~~~~-~l~lI~g-~~GPF~p~~p~~VPLWlAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E-~~~~~Fs   86 (265)
                      |-+|+|-|--....|. .+.+|+| ++|||+||.|++||||||++||++++|+|+||.||+++.|++++++| ++++.|+
T Consensus       282 al~eLvVvKalvDip~~~L~lI~G~digpfkag~~~~VPLWLAi~LKq~~KC~IvpP~Wm~ie~Lk~I~eeE~~~~~~Ft  361 (479)
T PTZ00362        282 ALDELVVVKALVDIPYIDLSEIEGFDFKEMKSGERQWLPIYIAKELSHFGLVTVEFPFWFYIKNLKNIYEREFEDQNELT  361 (479)
T ss_pred             HhcceEEEEEecCCCCCcceeeeccccCCcCCCCeeEEeeeehhhhcccCceEEeCcccccHHHHHHHHHHHhhCccccc
Confidence            5567777754444411 2378999 99999999999999999999999999999999999999999999999 7789999


Q ss_pred             CCCCccHHHHHHHHHhc-------CCCCCCC------hHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcceecCCchHHH
Q psy15258         87 KMPSDHYMEMSHIILDI-------GADDIPN------VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFE  153 (265)
Q Consensus        87 ~LP~~hy~EiA~lLL~~-------a~dDi~~------~~~ir~Li~DI~evR~~Klr~gl~~~~~~~~~~l~l~NLt~mE  153 (265)
                      +||++||+|||++||++       |+||+++      +++||++|+|||++|++|+|+|++.+ ...+.|++++|||.||
T Consensus       362 ~LP~p~y~EIa~lLl~~~~F~~~~a~edi~~~d~~~~~~kVR~LIeDIrd~R~~KIr~~Le~~-~~~ss~i~LdNLslmE  440 (479)
T PTZ00362        362 DLPSPYFFEISSMFLENNIFKKVTPIETIGQRTVYKYISKVAGLVEDIRYKRLKKIMNHLENQ-DVHSSIIYIDNLQISE  440 (479)
T ss_pred             cCCchhHHHHHHHHHhcccccccCChhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccEEEECCccHHH
Confidence            99977999999999999       7777666      69999999999999999999999997 3446899999999999


Q ss_pred             HHhhHHhHHHHHHHHhhhhccccccccc
Q psy15258        154 INSIRNILCDVLDTMSSLKDKQCDVDVT  181 (265)
Q Consensus       154 in~iR~f~~~amd~l~~l~~~~~~~d~~  181 (265)
                      ++.+|+    +|+.+.+.....+..+-+
T Consensus       441 i~~Vn~----~Ls~f~k~d~~~~~~~~~  464 (479)
T PTZ00362        441 TYCVNQ----LLSVFFQYDKNLNSLTNS  464 (479)
T ss_pred             HHHHHH----HHHHHHHhcccccccccc
Confidence            999999    556666666666665555

>KOG4071|consensus

Probab=99.89  E-value=1.2e-23  Score=182.55  Aligned_cols=76  Identities=39%  Similarity=0.649  Sum_probs=71.4

Q ss_pred             cccccccccChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccCCcchHHHHhhhhhHHHHHHHHhhhhccccCccc
Q psy15258        176 CDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDV  255 (265)
Q Consensus       176 ~~~d~~~~~~~~~ir~li~Di~d~R~~Klr~~~~~f~~~~~~h~~ldnlt~mEin~irpf~~~~m~~l~~~~~~~~~~~~  255 (265)
                      +++||+   ++++||++||||||+|+||+|+|++.|+++  +|||+||||+||||++|||++++||++++++++..+++.
T Consensus       104 a~Ddi~---~~eeiR~lV~DI~d~R~aKlr~s~~~f~~~--~hakldNltLmEiN~~rpfl~~~l~~~~ki~~~s~~~~~  178 (187)
T KOG4071|consen  104 ARDDIP---DIEEIRTLVKDIRDIRLAKLRTSLDSFNRQ--AHAKLDNLTLMEINEIRPFLTEALDHGRKIRQTSKDQQE  178 (187)
T ss_pred             ccccch---hHHHHHHHHHHHHHHHHHHHHHhHHHHhhH--hhcCcccceeeeeccchHHHHHHHHHHHHHhhhhhhccc
Confidence            788999   999999999999999999999999999755  899999999999999999999999999999998877776


Q ss_pred             c
Q psy15258        256 T  256 (265)
Q Consensus       256 ~  256 (265)
                      +
T Consensus       179 ~  179 (187)
T KOG4071|consen  179 E  179 (187)
T ss_pred             c
Confidence            5

>PF05916 Sld5: GINS complex protein; InterPro: IPR021151 DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template

Probab=99.77  E-value=1.9e-18  Score=134.15  Aligned_cols=104  Identities=27%  Similarity=0.522  Sum_probs=89.9

Q ss_pred             cchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhhcc---CCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHH
Q psy15258         43 AKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKS---RFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIK  119 (265)
Q Consensus        43 ~~VPLWlAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E~~~---~~Fs~LP~~hy~EiA~lLL~~a~dDi~~~~~ir~Li~  119 (265)
                      ++||+|+|..|++++.|+|.+|+|++++++..+..+|++.   ..|+++| +||+|.+.+++..+       +.++.++.
T Consensus         1 v~lP~w~a~~L~~~~~~~i~~p~~~~~~~~~~l~~e~~~~~~~~~l~~l~-~~f~~~~~~l~~~~-------~~ik~~l~   72 (108)
T PF05916_consen    1 VELPLWLAKELKKRNLVEIQPPDWFSIEYLNALEAEEKNNSNKVDLSKLP-PYFYELGEMLLELL-------ERIKRLLR   72 (108)
T ss_dssp             EEEEHHHHHHHHHTTSEEEE-TCCHCHHHHHHHHHHHCCCS-HCSCCTSS-TTHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             CcCCcchHHHHHHcCCeeecCcHhhhHHHHHHHHhhhccccchhhhhcCC-hHHHHHHHHHHHHH-------HHHHHHHH
Confidence            5799999999999999999999999999966666666653   5999999 89999999999988       89999999


Q ss_pred             HHHHHHHHHHHHhHHHHH-hcCCcceecCCchHHHH
Q psy15258        120 DIWDLRISKLRSSIDTFV-KSGGGHATLNHLTQFEI  154 (265)
Q Consensus       120 DI~evR~~Klr~gl~~~~-~~~~~~l~l~NLt~mEi  154 (265)
                      +++..|..||+++..... ..+.....++|||.+|.
T Consensus        73 ~~~~~R~~KI~~~~~~~~~~~~~~~~~~~~Ls~~Er  108 (108)
T PF05916_consen   73 DYLRIRLKKILSLAWHLLSGNDDPQEILENLSEEER  108 (108)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHCTTCHHHHTTS-HHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccCCcHHHHccCCHhhC
Confidence            999999999999988762 34556778999999984

One of the key early steps leading to DNA replication is formation of the pre- replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery. Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon []. The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100 kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. ; PDB: 2EHO_L 2E9X_G 2Q9Q_H 3ANW_B.

>COG5093 Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=2.2e-16  Score=134.62  Aligned_cols=70  Identities=26%  Similarity=0.429  Sum_probs=65.3

Q ss_pred             ccccccccccChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccCCcchHHHHhhhhhHHHHHHHHhhhhccc
Q psy15258        175 QCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQ  250 (265)
Q Consensus       175 ~~~~d~~~~~~~~~ir~li~Di~d~R~~Klr~~~~~f~~~~~~h~~ldnlt~mEin~irpf~~~~m~~l~~~~~~~  250 (265)
                      .|-+||-   |++++|.+|+||+++|++|.++|++..   ||+|+++||||+||||++|||+..+||.++++++.-
T Consensus       113 ~~~ddve---diee~r~iv~dirEiRq~K~lkGlk~l---ne~~L~ldNl~l~EiNEirp~i~e~md~~R~I~~~s  182 (185)
T COG5093         113 ENCDDVE---DIEESRMIVEDIREIRQAKTLKGLKCL---NEKALNLDNLTLFEINEIRPLILESMDVGRRIEDLS  182 (185)
T ss_pred             hccchHh---HHHHHHHHHHHHHHHHHHHHHhhHhhh---hhhhcCccccchhhhhhhHHHHHHHHHHHHHHHhhh
Confidence            4566777   899999999999999999999999996   999999999999999999999999999999998753

>PTZ00362 hypothetical protein; Provisional

Probab=99.42  E-value=4.8e-13  Score=130.16  Aligned_cols=96  Identities=15%  Similarity=0.188  Sum_probs=70.5

Q ss_pred             ceecCCchHHHHHhhHHhHHHH-HHHHhhhhccccccccccccChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCccccc
Q psy15258        143 HATLNHLTQFEINSIRNILCDV-LDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATL  221 (265)
Q Consensus       143 ~l~l~NLt~mEin~iR~f~~~a-md~l~~l~~~~~~~d~~~~~~~~~ir~li~Di~d~R~~Klr~~~~~f~~~~~~h~~l  221 (265)
                      .-.|.+=-.|||..+  |+..+ +........-...++++   .+++||++||||||+|++|+|+|+++|- .+++|++|
T Consensus       360 Ft~LP~p~y~EIa~l--Ll~~~~F~~~~a~edi~~~d~~~---~~~kVR~LIeDIrd~R~~KIr~~Le~~~-~~ss~i~L  433 (479)
T PTZ00362        360 LTDLPSPYFFEISSM--FLENNIFKKVTPIETIGQRTVYK---YISKVAGLVEDIRYKRLKKIMNHLENQD-VHSSIIYI  433 (479)
T ss_pred             cccCCchhHHHHHHH--HHhcccccccCChhhcccccccc---cHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccEEEE
Confidence            345665566888876  55431 11111111122345666   6899999999999999999999999983 45799999


Q ss_pred             CCcchHHHHhhhhhHHHHHHHHhhhhc
Q psy15258        222 NHLTQFEINSIRNILCDVLDTMSSLKD  248 (265)
Q Consensus       222 dnlt~mEin~irpf~~~~m~~l~~~~~  248 (265)
                      ||||+||++.|||    +|+.+.+++.
T Consensus       434 dNLslmEi~~Vn~----~Ls~f~k~d~  456 (479)
T PTZ00362        434 DNLQISETYCVNQ----LLSVFFQYDK  456 (479)
T ss_pred             CCccHHHHHHHHH----HHHHHHHhcc
Confidence            9999999999999    7888888743

>KOG1106|consensus

Probab=97.27  E-value=0.0011  Score=58.27  Aligned_cols=98  Identities=14%  Similarity=0.255  Sum_probs=76.3

Q ss_pred             hhcCceeEEeeCCccccccccccccccCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCCC
Q psy15258          9 IAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKM   88 (265)
Q Consensus         9 lAe~e~I~IvP~f~~~~~l~lI~g~~GPF~p~~p~~VPLWlAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E~~~~~Fs~L   88 (265)
                      +|..+.|...-...+ ..+-+++..--+..+|..|.+|+|+|-.|+..+--.|.+|+-++. ..++.++.+-+.-.+..+
T Consensus        21 la~~~ki~ct~e~~i-~~lgfl~~~~~~~~~g~kVelP~wl~~~L~~~~~~si~lP~~fs~-~~rn~i~Adp~~vdL~s~   98 (177)
T KOG1106|consen   21 LASGEKIPCTFETKI-PNLGFLQAPPRELPAGRKVELPYWLAEELAINQFVSILLPDIFSE-KVRNVIKADPNKVDLRSL   98 (177)
T ss_pred             HhcCCcccceeeecC-CCCCccCCCcccCCCCCcccchHHHHHHHhhccceeecCchHHHH-HHHHHHhcCcceeecccc
Confidence            566666555555555 555556655667789999999999999999999999999998875 455666777777788888


Q ss_pred             CCccHHHHHHHHHhcCCCCCC
Q psy15258         89 PSDHYMEMSHIILDIGADDIP  109 (265)
Q Consensus        89 P~~hy~EiA~lLL~~a~dDi~  109 (265)
                      - +||++.+..|+-.-+++-.
T Consensus        99 ~-phFY~fg~kl~~l~s~~~l  118 (177)
T KOG1106|consen   99 C-PHFYEFGMKLLPLDSGENL  118 (177)
T ss_pred             c-cHHHHHHHHHhhcccCcch
Confidence            7 8999999999987776544

>PF05916 Sld5: GINS complex protein; InterPro: IPR021151 DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template

Probab=94.74  E-value=0.052  Score=41.58  Aligned_cols=43  Identities=21%  Similarity=0.319  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHH-hcCCcccccCCcchHHH
Q psy15258        187 DLIRTLIKDIWDLRISKLRSSIDTFV-KSGGGHATLNHLTQFEI  229 (265)
Q Consensus       187 ~~ir~li~Di~d~R~~Klr~~~~~f~-~~~~~h~~ldnlt~mEi  229 (265)
                      +.++.++.|+++.|..|++.++..+. ..+.++..++|||.+|.
T Consensus        65 ~~ik~~l~~~~~~R~~KI~~~~~~~~~~~~~~~~~~~~Ls~~Er  108 (108)
T PF05916_consen   65 ERIKRLLRDYLRIRLKKILSLAWHLLSGNDDPQEILENLSEEER  108 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHCTTCHHHHTTS-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHccCCHhhC
Confidence            77889999999999999999999973 34666679999999994

One of the key early steps leading to DNA replication is formation of the pre- replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery. Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon []. The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100 kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. ; PDB: 2EHO_L 2E9X_G 2Q9Q_H 3ANW_B.

>COG5138 Uncharacterized conserved protein [Function unknown]

Probab=93.78  E-value=0.12  Score=44.45  Aligned_cols=89  Identities=12%  Similarity=0.149  Sum_probs=60.5

Q ss_pred             hhhcCceeEEeeCCccccccccccccccCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCC
Q psy15258          8 FIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIK   87 (265)
Q Consensus         8 FlAe~e~I~IvP~f~~~~~l~lI~g~~GPF~p~~p~~VPLWlAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E~~~~~Fs~   87 (265)
                      -++++..|...-..+. +.+-+++..=.|.--|.++++|+|||-.|-...-..+.+|..++-.-+.++...=.. -..-.
T Consensus         9 iL~~~s~ipctf~~~I-pglG~l~~~gr~~p~n~kvelP~wLa~~Lainsfv~~l~p~~fs~~v~naika~P~t-vdlrs   86 (168)
T COG5138           9 ILLGESRIPCTFKHKI-PGLGFLGPRGRILPENRKVELPYWLASFLAINSFVCELGPGFFSESVLNAIKAKPST-VDLRS   86 (168)
T ss_pred             HhcCCCccceeeEeec-CCcccCCCCCcccCCCCeeechHHHHHHHHHhhhHHhcCcchHHHHHHHHHhcCCce-eehhh
Confidence            3566766666666666 566556655556777899999999999999887888999999987766665443322 23334


Q ss_pred             CCCccHHHHHHH
Q psy15258         88 MPSDHYMEMSHI   99 (265)
Q Consensus        88 LP~~hy~EiA~l   99 (265)
                      +- +||+-.|..
T Consensus        87 I~-~hff~lA~K   97 (168)
T COG5138          87 IC-PHFFYLAEK   97 (168)
T ss_pred             cc-hHHHHHHHH
Confidence            43 466666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
2e9x_B	185	The Crystal Structure Of Human Gins Core Complex Le		5e-45
2e9x_B	185	The Crystal Structure Of Human Gins Core Complex Le		2e-10
2q9q_A	191	The Crystal Structure Of Full Length Human Gins Com		6e-45
2q9q_A	191	The Crystal Structure Of Full Length Human Gins Com		2e-10
2eho_C	186	Crystal Structure Of Human Gins Complex Length = 18		6e-41
2eho_C	186	Crystal Structure Of Human Gins Complex Length = 18		3e-09

>pdb|2E9X|B Chain B, The Crystal Structure Of Human Gins Core Complex Length = 185

Iteration: 1
 Score =  177 bits (449), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 1   MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59
Query: 61  LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L+ P WM+                F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct: 60  LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           +WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct: 120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 171

>pdb|2E9X|B Chain B, The Crystal Structure Of Human Gins Core Complex Length = 185

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 186 VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSS 245
            D IRTL+KD+WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  
Sbjct: 110 ADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYK 169
Query: 246 LK 247
           L+
Sbjct: 170 LR 171

>pdb|2Q9Q|A Chain A, The Crystal Structure Of Full Length Human Gins Complex Length = 191

Iteration: 1
 Score =  177 bits (449), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 7   MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 65
Query: 61  LVLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L+ P WM+                F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct: 66  LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 125
Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           +WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+
Sbjct: 126 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLR 177

>pdb|2Q9Q|A Chain A, The Crystal Structure Of Full Length Human Gins Complex Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 186 VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSS 245
            D IRTL+KD+WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  
Sbjct: 116 ADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYK 175
Query: 246 LK 247
           L+
Sbjct: 176 LR 177

>pdb|2EHO|C Chain C, Crystal Structure Of Human Gins Complex Length = 186

Iteration: 1
 Score =  164 bits (414), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 109/171 (63%), Gaps = 1/171 (0%)
Query: 2   DPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRL 61
           D AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCRL
Sbjct: 3   DAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRL 61
Query: 62  VLPTWMNXXXXXXXXXXXXXSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDI 121
           + P W +                F   PS +Y E++ ++L+  +D+IP  D IRTL+KD 
Sbjct: 62  LPPEWXDVEKLEKXRDHERKEETFTPXPSPYYXELTKLLLNHASDNIPKADEIRTLVKDX 121
Query: 122 WDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLK 172
           WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+    L+
Sbjct: 122 WDTRIAKLRVSADSFVRQQEAHAKLDNLTLXEINTSGTFLTQALNHXYKLR 172

>pdb|2EHO|C Chain C, Crystal Structure Of Human Gins Complex Length = 186

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 186 VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSS 245
            D IRTL+KD WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+    
Sbjct: 111 ADEIRTLVKDXWDTRIAKLRVSADSFVRQQEAHAKLDNLTLXEINTSGTFLTQALNHXYK 170
Query: 246 LK 247
           L+
Sbjct: 171 LR 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
2e9x_B	185	DNA replication complex GINS protein PSF2; eukaryo	2e-70
2e9x_B	185	DNA replication complex GINS protein PSF2; eukaryo	8e-17

>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A* Length = 185

 Score =  214 bits (545), Expect = 2e-70
 Identities = 89/175 (50%), Positives = 124/175 (70%), Gaps = 1/175 (0%)

Query: 1   MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
           MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 1   MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query: 61  LVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKD 120
           L+ P WM++E L ++++ E+K   F  MPS +YME++ ++L+  +D+IP  D IRTL+KD
Sbjct: 60  LLPPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKD 119

Query: 121 IWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQ 175
           +WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+   
Sbjct: 120 MWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNL 174

>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A* Length = 185

 Score = 75.3 bits (185), Expect = 8e-17
 Identities = 30/66 (45%), Positives = 40/66 (60%)

Query: 185 NVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMS 244
             D IRTL+KD+WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M 
Sbjct: 109 KADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMY 168

Query: 245 SLKDKQ 250
            L+   
Sbjct: 169 KLRTNL 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
2e9x_B	185	DNA replication complex GINS protein PSF2; eukaryo	100.0
2e9x_B	185	DNA replication complex GINS protein PSF2; eukaryo	99.78
2e9x_C	219	GINS complex subunit 3; eukaryotic DNA replication	98.76
3anw_B	171	GINS23, putative uncharacterized protein; SLD5 sup	98.32
3anw_A	188	GINS51, putative uncharacterized protein; SLD5 sup	95.01

>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*

Probab=100.00  E-value=3e-65  Score=445.07  Aligned_cols=175  Identities=50%  Similarity=0.895  Sum_probs=169.4

Q ss_pred             CChhhhhhhhcCceeEEeeCCccccccccccccccCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhh
Q psy15258          1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEK   80 (265)
Q Consensus         1 m~p~E~eFlAe~e~I~IvP~f~~~~~l~lI~g~~GPF~p~~p~~VPLWlAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E~   80 (265)
                      |||+|++|+||+++|+|+|+|++ ++++||+|+||||+||.|++||||||++||++++|+|+||+||++++|++++++|+
T Consensus         1 ~~p~EieFlae~e~I~IvP~f~~-~~~~lI~g~~gPf~p~~~~~VPLWLAl~Lkk~~kc~I~~P~Wl~~e~L~~~~~~E~   79 (185)
T 2e9x_B            1 MDAAEVEFLAEKELVTIIPNFSL-DKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHER   79 (185)
T ss_dssp             CCHHHHHHHHTTSEEEEEESSCB-CCEEETTEEECCBCTTCCEEEEHHHHHHHHHTTSEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCeEEEEeCCCC-CceeeeecccCCcCCCCcceeHHHHHHHHHhCCceEEECCcccCHHHHHHHHHHHh
Confidence            89999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCc-cHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcceecCCchHHHHHhhHH
Q psy15258         81 KSRFFIKMPSD-HYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRN  159 (265)
Q Consensus        81 ~~~~Fs~LP~~-hy~EiA~lLL~~a~dDi~~~~~ir~Li~DI~evR~~Klr~gl~~~~~~~~~~l~l~NLt~mEin~iR~  159 (265)
                      +++.|++|| + ||+|||++||++|+||++++++||+||+|||++|++|+|+|++.+.+.++++++++|+|+||+|++|+
T Consensus        80 ~~~~f~~lP-~~~~~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~vR~~Kir~~l~~l~~~~~~~~~l~nls~mEin~iR~  158 (185)
T 2e9x_B           80 KEETFTPMP-SPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGT  158 (185)
T ss_dssp             HCSSCCCCS-STTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTCCHHHHHHHHH
T ss_pred             cccccccCC-HHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCccHHHHHHhHH
Confidence            988999999 6 79999999999999999999999999999999999999999999987778899999999999999999


Q ss_pred             hHHHHHHHHhhhhccccc
Q psy15258        160 ILCDVLDTMSSLKDKQCD  177 (265)
Q Consensus       160 f~~~amd~l~~l~~~~~~  177 (265)
                      |++++||++++++++...
T Consensus       159 f~~~~~~~l~~l~~~~~~  176 (185)
T 2e9x_B          159 FLTQALNHMYKLRTNLQP  176 (185)
T ss_dssp             HHHHHHHHHHHHTTSCC-
T ss_pred             HHHHHHHHHHHHhccccc
Confidence            999999999999877644

>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*

Probab=99.78  E-value=3.5e-19  Score=154.89  Aligned_cols=72  Identities=42%  Similarity=0.675  Sum_probs=68.0

Q ss_pred             cccccccccChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccCCcchHHHHhhhhhHHHHHHHHhhhhccc
Q psy15258        176 CDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQ  250 (265)
Q Consensus       176 ~~~d~~~~~~~~~ir~li~Di~d~R~~Klr~~~~~f~~~~~~h~~ldnlt~mEin~irpf~~~~m~~l~~~~~~~  250 (265)
                      +.+|++   ++++||++|+||||+|++|+|+|+++|.+++++|++|||||+||||++|||++++||+++++++..
T Consensus       103 a~dDi~---~~~~ir~Li~DI~~vR~~Kir~~l~~l~~~~~~~~~l~nls~mEin~iR~f~~~~~~~l~~l~~~~  174 (185)
T 2e9x_B          103 ASDNIP---KADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRTNL  174 (185)
T ss_dssp             HGGGST---THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTCCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             cccccc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCccHHHHHHhHHHHHHHHHHHHHHhccc
Confidence            357888   999999999999999999999999999887889999999999999999999999999999998765

>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*

Probab=98.76  E-value=1.5e-07  Score=83.53  Aligned_cols=149  Identities=15%  Similarity=0.181  Sum_probs=108.4

Q ss_pred             hhhhcCceeEEeeCCccccccc--cccc---cc-cC-CCCCCccchhHHHHHHh--cccCcceeeCCCCCCHHHHHHHHH
Q psy15258          7 EFIAEDQNVEIIPKFNHLNLIH--LISG---DV-GP-FRAGIPAKVPLWLAINL--KQRQKCRLVLPTWMNLETLTEIKE   77 (265)
Q Consensus         7 eFlAe~e~I~IvP~f~~~~~l~--lI~g---~~-GP-F~p~~p~~VPLWlAi~L--Kk~~kC~IvpP~WL~ve~L~~~l~   77 (265)
                      .+||++|.|..+++... ..+-  ++.|   .- .. ..+|.++.+|||||..|  .+++.|.|.+|+-++....+ .++
T Consensus        27 dILa~~ekVpC~f~~~~-~~lG~~~Ld~~a~~~~~d~l~~G~kveLPlWLA~~L~~~~~~~v~i~~P~~y~~~~~~-~L~  104 (219)
T 2e9x_C           27 DILMSHEKLPVRTETAM-PRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRT-VFS  104 (219)
T ss_dssp             HHHHTTSEEEEEESSCB-TTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSSSSEEECCCGGGSHHHHH-HHH
T ss_pred             HHHhcCCeeeeEEeecC-CCCcHhhcCCccCCCCcccCCCCCEecchHHHHHHHHHhccCceEEeCchhhhHHHHH-HHh
Confidence            47999999999999999 7776  5555   44 34 89999999999999999  99999999999999977654 455


Q ss_pred             HhhccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCc-ceecCCchHHHHHh
Q psy15258         78 EEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGG-HATLNHLTQFEINS  156 (265)
Q Consensus        78 ~E~~~~~Fs~LP~~hy~EiA~lLL~~a~dDi~~~~~ir~Li~DI~evR~~Klr~gl~~~~~~~~~-~l~l~NLt~mEin~  156 (265)
                      .+-..-.+..+. +||++.+..|+..  +.. +..++...+.+....|..+|-......  .++. .--+.+|+.+|-.-
T Consensus       105 Adp~~VdL~~~~-p~fY~lG~~L~~l--~~~-ed~~L~~~L~~tf~~R~~~I~d~a~~~--~~~~~~~~~~~Ld~~Er~L  178 (219)
T 2e9x_C          105 ADPNVVDLHKMG-PHFYGFGSQLLHF--DSP-ENADISQSLLQTFIGRFRRIMDSSQNA--YNEDTSALVARLDEMERGL  178 (219)
T ss_dssp             HCGGGSCTTTSC-SSHHHHHHHGGGG--CCT-THHHHHHHHHHHHHHHHHHHHHHHTTS--SCCCCHHHHTTCCHHHHHH
T ss_pred             cCCcEEecccCC-chHHHHHHHHHhc--ccc-chHHHHHHHHHHHHHHHHHHHHHhccc--ccccHHHHHhcCCHHHHHH
Confidence            555666778887 7999999999876  122 234666667777777888877654321  1111 11479999999888


Q ss_pred             hHHhHHH
Q psy15258        157 IRNILCD  163 (265)
Q Consensus       157 iR~f~~~  163 (265)
                      .+..--+
T Consensus       179 f~~g~~~  185 (219)
T 2e9x_C          179 FQTGQKG  185 (219)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7755433

>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=98.32  E-value=2.1e-06  Score=73.76  Aligned_cols=122  Identities=16%  Similarity=0.199  Sum_probs=85.8

Q ss_pred             cccCCCCCCccchhHHHHHHhcccCcceeeCCCCCCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHHh--------cC
Q psy15258         33 DVGPFRAGIPAKVPLWLAINLKQRQKCRLVLPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILD--------IG  104 (265)
Q Consensus        33 ~~GPF~p~~p~~VPLWlAi~LKk~~kC~IvpP~WL~ve~L~~~l~~E~~~~~Fs~LP~~hy~EiA~lLL~--------~a  104 (265)
                      +||+.+.|..+.||.|+|..|...+-|.|.--.=-.++.|.+++-+|+++..+.+||. .|..=++..+.        ..
T Consensus        22 ~f~~~~kG~e~~lp~wlA~~L~e~g~vei~d~~~~~I~eL~~il~eEr~~~~L~~LP~-dFY~rvr~yI~~Le~ei~~~~  100 (171)
T 3anw_B           22 PFGDWKSGDIVLVEDWKARELWEAGVVEIVDETDKIIGEIDKVIAEERESEPLTLLPE-GLYERAEFYAYYLENYVRLNP  100 (171)
T ss_dssp             CCTTCCSSCEEEEEHHHHHHHHHTTSEEECCTHHHHHHHHHHHHHHHTTSSSCCCCCT-THHHHHHHHHHHHHHHTTCCC
T ss_pred             hhhhcCCCCeeeccHHHHHHHHHCCCEeeccccchHHHHHHHHHHHhhccCccccCCH-HHHHHHHHHHHHHHHHHHhcc
Confidence            4899999999999999999999999999964124558899999999999999999995 44455554443        11


Q ss_pred             CCCCCC-------hHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcceecCCchHHHHHhhH
Q psy15258        105 ADDIPN-------VDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIR  158 (265)
Q Consensus       105 ~dDi~~-------~~~ir~Li~DI~evR~~Klr~gl~~~~~~~~~~l~l~NLt~mEin~iR  158 (265)
                      ..|+..       ...++..+++|.+.|..||-+.+.  ...+ +.--+++||.-|-.-..
T Consensus       101 ~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~la~--~~~~-~~eil~rLTpEEk~iy~  158 (171)
T 3anw_B          101 RESVDTINVKLTKLANLRKKLRDLKLIRFNKILKAVM--LRPN-SLELLSRLAPEERRIYL  158 (171)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--C--C-CHHHHTTSCHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCC-cHHHHhcCCHHHHHHHH
Confidence            224332       355666778888899999887551  1122 22237999998865443

>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=95.01  E-value=0.02  Score=49.20  Aligned_cols=86  Identities=23%  Similarity=0.355  Sum_probs=62.1

Q ss_pred             CCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHHh---c---CCC-CC--C------ChHHHHHHHHHHHHHHHHHHHH
Q psy15258         67 MNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILD---I---GAD-DI--P------NVDLIRTLIKDIWDLRISKLRS  131 (265)
Q Consensus        67 L~ve~L~~~l~~E~~~~~Fs~LP~~hy~EiA~lLL~---~---a~d-Di--~------~~~~ir~Li~DI~evR~~Klr~  131 (265)
                      |+++.|.+++..|+++..++++|..+|-++...+-.   .   +.| ..  .      ....++.+++.|.++|..|+-.
T Consensus         1 mdi~eL~~il~~Er~s~~L~~i~~~FY~~v~~yI~~L~~~~~~~~~~~~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv~   80 (188)
T 3anw_A            1 MDIVKLRELLEAELSSTDLNELDEDFYVEFDSLIKALKLSAESSRERGEDVEERLYLAQLKIAESLMKEIIKLRLHKIVD   80 (188)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999996677777665432   1   112 11  1      1234788899999999999987


Q ss_pred             hHHHHHhcCCcceecCCchHHHHHhhHHh
Q psy15258        132 SIDTFVKSGGGHATLNHLTQFEINSIRNI  160 (265)
Q Consensus       132 gl~~~~~~~~~~l~l~NLt~mEin~iR~f  160 (265)
                      ..  +  .+    ..+|+|.-|-.-....
T Consensus        81 ~a--~--~~----~~~~Lt~EEk~l~~~l  101 (188)
T 3anw_A           81 LA--V--EG----KIAEMTAEEKRLFNVI  101 (188)
T ss_dssp             HH--H--HT----EECCCCHHHHHHHHHH
T ss_pred             HH--h--hh----hhhhCCHHHHHHHHHH
Confidence            65  1  12    4699999997665433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d2e9xb1	112	a.278.1.2 (B:62-173) DNA replication complex GINS	8e-39
d2e9xb1	112	a.278.1.2 (B:62-173) DNA replication complex GINS	4e-17
d2e9xb2	61	d.344.1.2 (B:1-61) DNA replication complex GINS pr	9e-28

>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF2 C-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 8e-39
 Identities = 48/110 (43%), Positives = 73/110 (66%)

Query: 64  PTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWD 123
           P WM++E L ++++ E+K   F  MPS +YME++ ++L+  +D+IP  D IRTL+KD+WD
Sbjct: 2   PEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWD 61

Query: 124 LRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMSSLKD 173
            RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M  L+ 
Sbjct: 62  TRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMYKLRT 111

>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF2 C-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (179), Expect = 4e-17
 Identities = 30/64 (46%), Positives = 40/64 (62%)

Query: 185 NVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHATLNHLTQFEINSIRNILCDVLDTMS 244
             D IRTL+KD+WD RI+KLR S D+FV+    HA L++LT  EIN+    L   L+ M 
Sbjct: 48  KADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHAKLDNLTLMEINTSGTFLTQALNHMY 107

Query: 245 SLKD 248
            L+ 
Sbjct: 108 KLRT 111

>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF2 N-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.4 bits (248), Expect = 9e-28
 Identities = 41/62 (66%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 1  MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCR 60
          MD AE+EF+AE + V IIP F+ L+ I+LI GD+GPF  G+P +VPLWLAINLKQRQKCR
Sbjct: 1  MDAAEVEFLAEKELVTIIPNFS-LDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCR 59

Query: 61 LV 62
          L+
Sbjct: 60 LL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d2e9xb1	112	DNA replication complex GINS protein PSF2 {Human (	100.0
d2e9xb2	61	DNA replication complex GINS protein PSF2 {Human (	99.97
d2e9xb1	112	DNA replication complex GINS protein PSF2 {Human (	99.88
d2e9xc2	87	GINS complex subunit 3, PSF3 {Human (Homo sapiens)	96.78

>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF2 C-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-39  Score=260.61  Aligned_cols=112  Identities=43%  Similarity=0.785  Sum_probs=108.6

Q ss_pred             CCCCCCHHHHHHHHHHhhccCCCCCCCCccHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCc
Q psy15258         63 LPTWMNLETLTEIKEEEKKSRFFIKMPSDHYMEMSHIILDIGADDIPNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGG  142 (265)
Q Consensus        63 pP~WL~ve~L~~~l~~E~~~~~Fs~LP~~hy~EiA~lLL~~a~dDi~~~~~ir~Li~DI~evR~~Klr~gl~~~~~~~~~  142 (265)
                      ||+||++++|++++++|++++.|++||++||+|||++||++|+||++++++||+||+|||++|++|+|+|++.+.+.+++
T Consensus         1 PP~Wl~ve~L~~~~~~E~~~~~f~~lP~~~~~Eia~~ll~~a~ddi~~~~~vr~Lv~DI~~vR~~Klr~~~~~l~~~~~~   80 (112)
T d2e9xb1           1 PPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQQEA   80 (112)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCSSCCCCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCccccHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            89999999999999999999999999977999999999999999999999999999999999999999999999888899


Q ss_pred             ceecCCchHHHHHhhHHhHHHHHHHHhhhhcc
Q psy15258        143 HATLNHLTQFEINSIRNILCDVLDTMSSLKDK  174 (265)
Q Consensus       143 ~l~l~NLt~mEin~iR~f~~~amd~l~~l~~~  174 (265)
                      +++++|||+||+|++|+|++++||++++|+.+
T Consensus        81 ~~~l~ni~~mEin~iR~f~~~~l~~l~~l~~n  112 (112)
T d2e9xb1          81 HAKLDNLTLMEINTSGTFLTQALNHMYKLRTN  112 (112)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             eeeecchhHHHHHHhHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999998753

>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF2 N-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.6e-32  Score=196.28  Aligned_cols=61  Identities=66%  Similarity=1.158  Sum_probs=60.3

Q ss_pred             CChhhhhhhhcCceeEEeeCCccccccccccccccCCCCCCccchhHHHHHHhcccCcceee
Q psy15258          1 MDPAEIEFIAEDQNVEIIPKFNHLNLIHLISGDVGPFRAGIPAKVPLWLAINLKQRQKCRLV   62 (265)
Q Consensus         1 m~p~E~eFlAe~e~I~IvP~f~~~~~l~lI~g~~GPF~p~~p~~VPLWlAi~LKk~~kC~Iv   62 (265)
                      |+|+|++|+||||+|+|+|+|++ ++++||+|+||||+||.|++||||+|++||||+||+|+
T Consensus         1 m~P~E~eFlae~e~v~IvP~~~~-~~~~li~g~~gpf~p~~p~~VPLWlAl~LK~q~kC~IV   61 (61)
T d2e9xb2           1 MDAAEVEFLAEKELVTIIPNFSL-DKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLL   61 (61)
T ss_dssp             CCHHHHHHHHTTSEEEEEESSCB-CCEEETTEEECCBCTTCCEEEEHHHHHHHHHTTSEEEC
T ss_pred             CCHHHhhhhhcCCeEEEEcCccc-CceEeeccccCCcCCCCccccHHHHHHHHhccCceeEC
Confidence            89999999999999999999999 99999999999999999999999999999999999996

>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF2 C-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.9e-23  Score=163.05  Aligned_cols=92  Identities=35%  Similarity=0.572  Sum_probs=80.9

Q ss_pred             CCcceecCCchHHHHHhhHHhHHHHHHHHhhhhccccccccccccChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCccc
Q psy15258        140 GGGHATLNHLTQFEINSIRNILCDVLDTMSSLKDKQCDVDVTLQLNVDLIRTLIKDIWDLRISKLRSSIDTFVKSGGGHA  219 (265)
Q Consensus       140 ~~~~l~l~NLt~mEin~iR~f~~~amd~l~~l~~~~~~~d~~~~~~~~~ir~li~Di~d~R~~Klr~~~~~f~~~~~~h~  219 (265)
                      +.....+.+--.+|+..+  ++.            .+.+|++   ++++||+|||||||+|++|+|+|++.|.+++++|+
T Consensus        20 ~~~f~~lP~~~~~Eia~~--ll~------------~a~ddi~---~~~~vr~Lv~DI~~vR~~Klr~~~~~l~~~~~~~~   82 (112)
T d2e9xb1          20 EETFTPMPSPYYMELTKL--LLN------------HASDNIP---KADEIRTLVKDMWDTRIAKLRVSADSFVRQQEAHA   82 (112)
T ss_dssp             CSSCCCCSSTTHHHHHHH--HHH------------HHGGGST---THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             ccccccCCcHHHHHHHHH--HHH------------hcccCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence            344556666667888775  443            3578888   99999999999999999999999999999999999


Q ss_pred             ccCCcchHHHHhhhhhHHHHHHHHhhhhc
Q psy15258        220 TLNHLTQFEINSIRNILCDVLDTMSSLKD  248 (265)
Q Consensus       220 ~ldnlt~mEin~irpf~~~~m~~l~~~~~  248 (265)
                      +|||+|+||||++|||++++||++++|++
T Consensus        83 ~l~ni~~mEin~iR~f~~~~l~~l~~l~~  111 (112)
T d2e9xb1          83 KLDNLTLMEINTSGTFLTQALNHMYKLRT  111 (112)
T ss_dssp             ECTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eecchhHHHHHHhHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999975

>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF3 N-terminal domain-like
domain: GINS complex subunit 3, PSF3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00047  Score=51.27  Aligned_cols=51  Identities=14%  Similarity=0.352  Sum_probs=38.5

Q ss_pred             hhhhcCceeEEeeCCccccccc--cccccc-----cCCCCCCccchhHHHHHHhcccCc
Q psy15258          7 EFIAEDQNVEIIPKFNHLNLIH--LISGDV-----GPFRAGIPAKVPLWLAINLKQRQK   58 (265)
Q Consensus         7 eFlAe~e~I~IvP~f~~~~~l~--lI~g~~-----GPF~p~~p~~VPLWlAi~LKk~~k   58 (265)
                      .++|++|.|...-+... .++-  ++.++-     ++..+|.++++|||||..|-.+++
T Consensus        24 DILa~~EkvPc~f~~~~-p~LG~~~Ld~~~~~~~~~~i~~GskveLPLWLA~~L~~r~r   81 (87)
T d2e9xc2          24 DILMSHEKLPVRTETAM-PRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKR   81 (87)
T ss_dssp             HHHHTTSEEEEEESSCB-TTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSS
T ss_pred             HHhhcCCcccEEEEecC-cccchhhcCCCCCccccccCCCCCCccchHHHHHHHhhcCc
Confidence            46899999998888888 6664  555443     369999999999999999976664