Psyllid ID: psy15272

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mqtcwpkrqliecirskDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCErgadvnkgqrssslhyaacfgRPSVAKVLLRhganpdlrdedgktpldkarervdeghre
Flexible Loop (DISEMBL)
mqtcwpkrqliecirskdtDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGanpdlrdedgktpldkarervdeghre
Low Complexity Region (SEG)
MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE
Disordered region (IsUnstruct)
***CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG***SSLHYAACFGRPSVAKVLLR*****************************
Disordered Region (DISOPRED)
***CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD*****
Disordered Region (DISEMBL)
MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDK***********
Disordered Region (DISPRO)
****WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q9ULT8	2610	E3 ubiquitin-protein liga	yes	N/A	0.917	0.042	0.885	9e-55
Q69ZR2	2618	E3 ubiquitin-protein liga	yes	N/A	0.917	0.042	0.878	2e-53
Q5RJK8	282	Acyl-CoA-binding domain-c	no	N/A	0.826	0.354	0.352	5e-12
A2VDR2	282	Acyl-CoA-binding domain-c	no	N/A	0.826	0.354	0.343	2e-11
Q9BR61	282	Acyl-CoA-binding domain-c	no	N/A	0.826	0.354	0.343	3e-11
Q9D061	282	Acyl-CoA-binding domain-c	no	N/A	0.826	0.354	0.333	2e-10
Q876L4	730	Probable palmitoyltransfe	N/A	N/A	0.768	0.127	0.36	2e-10
O95271	1327	Tankyrase-1 OS=Homo sapie	no	N/A	0.768	0.070	0.357	4e-10
Q6PFX9	1320	Tankyrase-1 OS=Mus muscul	no	N/A	0.768	0.070	0.357	5e-10
Q9STP8	354	Acyl-CoA-binding domain-c	no	N/A	0.776	0.265	0.360	5e-10

>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=3

 Score =  211 bits (538), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 105/114 (92%), Gaps = 3/114 (2%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct: 364 RQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 423

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           +GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct: 424 RGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 474

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. May be required for development of the head mesenchyme and neural tube closure.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1 SV=2

 Score =  207 bits (526), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/115 (87%), Positives = 105/115 (91%), Gaps = 4/115 (3%)

Query: 8   RQLIECIRSKDTDALIETIDSGGV-EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 66
           RQLI+CIRSKDTDALI+ ID+G   EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV
Sbjct: 364 RQLIDCIRSKDTDALIDAIDTGAAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 423

Query: 67  NKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           N+GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct: 424 NRGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 475

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in development of the head mesenchyme and neural tube closure.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RJK8|ACBD6_RAT Acyl-CoA-binding domain-containing protein 6 OS=Rattus norvegicus GN=Acbd6 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL--CERGAD 65
           + + +  R  + D + + I S  V+VN  D+ G+ LL+WA   G +E+V+ L  CE G +
Sbjct: 160 KNIFDYCRENNIDHITKAIKSKTVDVNMTDEEGRALLHWACDRGHKELVKVLLQCEAGIN 219

Query: 66  VNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTP 107
               +  ++LHYAA      + ++LL+ GA+P LRD+DG  P
Sbjct: 220 CQDNEGQTALHYAAACEFSDIVELLLQSGADPTLRDQDGCLP 261

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Rattus norvegicus (taxid: 10116)

>sp|A2VDR2|ACBD6_BOVIN Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus GN=ACBD6 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 2/102 (1%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           + + +  R  + D + + I +  ++VN  D+ G+TLL+WA   G +E+V  L +  AD+N
Sbjct: 160 KDIFDYCRENNIDHITKVIKTKNMDVNMKDEEGRTLLHWACDRGHKELVTVLLQYRADIN 219

Query: 68  --KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTP 107
               +  ++LHYAA      + ++LL+ GA+P LRD+DG  P
Sbjct: 220 CQDNEGQTALHYAAACEFLDIVELLLQSGADPTLRDQDGCLP 261

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Bos taurus (taxid: 9913)

>sp|Q9BR61|ACBD6_HUMAN Acyl-CoA-binding domain-containing protein 6 OS=Homo sapiens GN=ACBD6 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           + + +  R  + D + + I S  V+VN  D+ G+ LL+WA   G +E+V  L +  AD+N
Sbjct: 160 KNIFDYCRENNIDHITKAIKSKNVDVNVKDEEGRALLHWACDRGHKELVTVLLQHRADIN 219

Query: 68  --KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTP 107
               +  ++LHYA+      + ++LL+ GA+P LRD+DG  P
Sbjct: 220 CQDNEGQTALHYASACEFLDIVELLLQSGADPTLRDQDGCLP 261

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Homo sapiens (taxid: 9606)

>sp|Q9D061|ACBD6_MOUSE Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           + + +  R  + D + + I S   +VN  D+ G+ LL+WA   G +E+V+ L +  A +N
Sbjct: 160 KNIFDYCRENNIDHIAKAIKSKAADVNMTDEEGRALLHWACDRGHKELVKVLLQYEAGIN 219

Query: 68  --KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTP 107
               +  ++LHYAA      + ++LL+ GA+P LRD+DG  P
Sbjct: 220 CQDNEGQTALHYAAACEFLDIVELLLQSGADPTLRDQDGCLP 261

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Mus musculus (taxid: 10090)

>sp|Q876L4|AKR2_SACBA Probable palmitoyltransferase AKR2 OS=Saccharomyces bayanus GN=AKR2 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 7/100 (7%)

Query: 10  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL--LNWASAFGTQEMVEFLCERGADVN 67
            IE I+  D   + E ++SG +++N   D    L  L+WA       + +FL  RGA+VN
Sbjct: 37  FIEAIKDDDLKVVKEVVESGAIDIN--KDCIDELPGLHWACIKNRFSIAKFLIRRGANVN 94

Query: 68  KG---QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDG 104
           +    +R+++LH+AA +G   +  +LL+HGANP L D  G
Sbjct: 95  QTAGPERATALHWAARYGHVYIVDLLLKHGANPTLIDGQG 134

Saccharomyces bayanus (taxid: 4931)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|O95271|TNKS1_HUMAN Tankyrase-1 OS=Homo sapiens GN=TNKS PE=1 SV=2

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 21  ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYA 78
           +++E +   G +V+  D  G   L+ A ++G  E+ E L   GA VN     + + LH A
Sbjct: 698 SVVEYLLHHGADVHAKDKGGLVPLHNACSYGHYEVAELLVRHGASVNVADLWKFTPLHEA 757

Query: 79  ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
           A  G+  + K+LL+HGA+P  ++ DG TPLD  +E
Sbjct: 758 AAKGKYEICKLLLKHGADPTKKNRDGNTPLDLVKE 792

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q6PFX9|TNKS1_MOUSE Tankyrase-1 OS=Mus musculus GN=Tnks PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 21  ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYA 78
           +++E +   G +V+  D  G   L+ A ++G  E+ E L   GA VN     + + LH A
Sbjct: 691 SVVEYLLHHGADVHAKDKGGLVPLHNACSYGHYEVAELLVRHGASVNVADLWKFTPLHEA 750

Query: 79  ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
           A  G+  + K+LL+HGA+P  ++ DG TPLD  +E
Sbjct: 751 AAKGKYEICKLLLKHGADPTKKNRDGNTPLDLVKE 785

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q9STP8|ACBP2_ARATH Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 3/97 (3%)

Query: 15  RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRS 72
           R  + + L+++I+SG + VN  D  G+T L+WA   G   + + L ++ ADVN    +  
Sbjct: 242 REGEVENLLKSIESG-IPVNARDSEGRTPLHWAIDRGHLNIAKVLVDKNADVNAKDNEGQ 300

Query: 73  SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
           + LHYA    R ++A+ L++  AN   +DEDG +PLD
Sbjct: 301 TPLHYAVVCDREAIAEFLVKQNANTAAKDEDGNSPLD 337

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with palmitoyl-CoA, but not with oleoyl-CoA. Binds to lead ions (Pb). May function as an intracellular carrier of acyl-CoA esters. Required for proper phospholipid and, to a lower extent, galactolipid composition.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
307197829	2600	E3 ubiquitin-protein ligase HECTD1 [Harp	0.942	0.043	0.947	2e-59
307166390	2551	E3 ubiquitin-protein ligase HECTD1 [Camp	0.942	0.044	0.938	4e-59
270005044	2552	hypothetical protein TcasGA2_TC007046 [T	0.942	0.044	0.929	1e-58
189236840	2609	PREDICTED: similar to hect E3 ubiquitin	0.942	0.043	0.929	1e-58
242008012	2686	hect E3 ubiquitin ligase, putative [Pedi	0.942	0.042	0.929	1e-58
345495040	2621	PREDICTED: E3 ubiquitin-protein ligase H	0.942	0.043	0.929	1e-58
350419570	2495	PREDICTED: E3 ubiquitin-protein ligase H	0.942	0.045	0.938	1e-58
345495044	2608	PREDICTED: E3 ubiquitin-protein ligase H	0.942	0.043	0.929	1e-58
345495042	2506	PREDICTED: E3 ubiquitin-protein ligase H	0.942	0.045	0.929	1e-58
340712868	2541	PREDICTED: LOW QUALITY PROTEIN: e3 ubiqu	0.942	0.044	0.938	2e-58

>gi|307197829|gb|EFN78940.1| E3 ubiquitin-protein ligase HECTD1 [Harpegnathos saltator]

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/114 (94%), Positives = 113/114 (99%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDALIE IDSGG+EVNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVN
Sbjct: 358 RQLIDCIRSKDTDALIEAIDSGGIEVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVN 417

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           KGQRSSSLHYAACFGRP++AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE
Sbjct: 418 KGQRSSSLHYAACFGRPAIAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 471

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166390|gb|EFN60527.1| E3 ubiquitin-protein ligase HECTD1 [Camponotus floridanus]

 Score =  231 bits (589), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 107/114 (93%), Positives = 113/114 (99%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDALIE ID+GG+EVNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVN
Sbjct: 370 RQLIDCIRSKDTDALIEAIDTGGIEVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVN 429

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           KGQRSSSLHYAACFGRP++AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE
Sbjct: 430 KGQRSSSLHYAACFGRPAIAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 483

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005044|gb|EFA01492.1| hypothetical protein TcasGA2_TC007046 [Tribolium castaneum]

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/114 (92%), Positives = 112/114 (98%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDALIE I+SGGVEVNFMDDVGQTLLNWASAFGTQEMVE+LC+RGADVN
Sbjct: 369 RQLIDCIRSKDTDALIEAIESGGVEVNFMDDVGQTLLNWASAFGTQEMVEYLCDRGADVN 428

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           KGQRSSSLHYAACFGRP++AKVLLRHGANPDLRDEDGKTPLDKARER DEGHRE
Sbjct: 429 KGQRSSSLHYAACFGRPAIAKVLLRHGANPDLRDEDGKTPLDKARERADEGHRE 482

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236840|ref|XP_001813187.1| PREDICTED: similar to hect E3 ubiquitin ligase [Tribolium castaneum]

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/114 (92%), Positives = 112/114 (98%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDALIE I+SGGVEVNFMDDVGQTLLNWASAFGTQEMVE+LC+RGADVN
Sbjct: 372 RQLIDCIRSKDTDALIEAIESGGVEVNFMDDVGQTLLNWASAFGTQEMVEYLCDRGADVN 431

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           KGQRSSSLHYAACFGRP++AKVLLRHGANPDLRDEDGKTPLDKARER DEGHRE
Sbjct: 432 KGQRSSSLHYAACFGRPAIAKVLLRHGANPDLRDEDGKTPLDKARERADEGHRE 485

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008012|ref|XP_002424807.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis] gi|212508345|gb|EEB12069.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/114 (92%), Positives = 112/114 (98%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDAL+E ID+ GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct: 362 RQLIDCIRSKDTDALVEAIDNAGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 421

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           KGQRSSSLHYAACFGRP++AKVLLRHGANPDLRDEDGKTPLDKARER+DEGHRE
Sbjct: 422 KGQRSSSLHYAACFGRPAIAKVLLRHGANPDLRDEDGKTPLDKARERIDEGHRE 475

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495040|ref|XP_003427422.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Nasonia vitripennis]

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/114 (92%), Positives = 113/114 (99%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDALIE I+SGG+EVNFMDDVGQTLLNWASAFGTQEMVEFLC++GADVN
Sbjct: 372 RQLIDCIRSKDTDALIEAIESGGIEVNFMDDVGQTLLNWASAFGTQEMVEFLCDKGADVN 431

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           KGQRSSSLHYAACFGRP++AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE
Sbjct: 432 KGQRSSSLHYAACFGRPAIAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 485

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419570|ref|XP_003492229.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Bombus impatiens]

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/114 (93%), Positives = 112/114 (98%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDALIE IDSGG+ VNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVN
Sbjct: 370 RQLIDCIRSKDTDALIEAIDSGGIGVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVN 429

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           KGQRSSSLHYAACFGRP++AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE
Sbjct: 430 KGQRSSSLHYAACFGRPAIAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 483

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495044|ref|XP_001605880.2| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Nasonia vitripennis]

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/114 (92%), Positives = 113/114 (99%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDALIE I+SGG+EVNFMDDVGQTLLNWASAFGTQEMVEFLC++GADVN
Sbjct: 372 RQLIDCIRSKDTDALIEAIESGGIEVNFMDDVGQTLLNWASAFGTQEMVEFLCDKGADVN 431

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           KGQRSSSLHYAACFGRP++AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE
Sbjct: 432 KGQRSSSLHYAACFGRPAIAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 485

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495042|ref|XP_003427423.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Nasonia vitripennis]

 Score =  229 bits (584), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/114 (92%), Positives = 113/114 (99%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDALIE I+SGG+EVNFMDDVGQTLLNWASAFGTQEMVEFLC++GADVN
Sbjct: 372 RQLIDCIRSKDTDALIEAIESGGIEVNFMDDVGQTLLNWASAFGTQEMVEFLCDKGADVN 431

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           KGQRSSSLHYAACFGRP++AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE
Sbjct: 432 KGQRSSSLHYAACFGRPAIAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 485

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712868|ref|XP_003394975.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase HECTD1-like [Bombus terrestris]

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/114 (93%), Positives = 112/114 (98%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           RQLI+CIRSKDTDALIE IDSGG+ VNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVN
Sbjct: 370 RQLIDCIRSKDTDALIEAIDSGGIGVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVN 429

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           KGQRSSSLHYAACFGRP++AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE
Sbjct: 430 KGQRSSSLHYAACFGRPAIAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 483

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
UNIPROTKB|G3V4V5	926	HECTD1 "E3 ubiquitin-protein l	0.917	0.119	0.885	8.6e-50
UNIPROTKB|E1C1E6	2576	HECTD1 "Uncharacterized protei	0.917	0.043	0.885	7.5e-49
ZFIN|ZDB-GENE-030616-153	2576	hectd1 "HECT domain containing	0.917	0.043	0.885	7.5e-49
UNIPROTKB|F1SHF6	2607	HECTD1 "Uncharacterized protei	0.917	0.042	0.885	7.6e-49
UNIPROTKB|E2RGH9	2609	HECTD1 "Uncharacterized protei	0.917	0.042	0.885	7.6e-49
UNIPROTKB|E1C040	2610	HECTD1 "Uncharacterized protei	0.917	0.042	0.885	7.6e-49
UNIPROTKB|E1BLD1	2610	HECTD1 "Uncharacterized protei	0.917	0.042	0.885	7.6e-49
UNIPROTKB|Q9ULT8	2610	HECTD1 "E3 ubiquitin-protein l	0.917	0.042	0.885	7.6e-49
RGD|1561653	2610	Hectd1 "HECT domain containing	0.917	0.042	0.885	7.6e-49
MGI|MGI:2384768	2618	Hectd1 "HECT domain containing	0.917	0.042	0.878	5.4e-48

UNIPROTKB|G3V4V5 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)]

 Score = 526 (190.2 bits), Expect = 8.6e-50, P = 8.6e-50
 Identities = 101/114 (88%), Positives = 105/114 (92%)

Query:     8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             RQLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct:   364 RQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 423

Query:    68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct:   424 RGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 474

GO:0001843 "neural tube closure" evidence=IEA

UNIPROTKB|E1C1E6 HECTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 526 (190.2 bits), Expect = 7.5e-49, P = 7.5e-49
 Identities = 101/114 (88%), Positives = 105/114 (92%)

Query:     8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             RQLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct:   364 RQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 423

Query:    68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct:   424 RGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 474

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-030616-153 hectd1 "HECT domain containing 1" [Danio rerio (taxid:7955)]

 Score = 526 (190.2 bits), Expect = 7.5e-49, P = 7.5e-49
 Identities = 101/114 (88%), Positives = 105/114 (92%)

Query:     8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             RQLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct:   364 RQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 423

Query:    68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct:   424 RGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 474

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IBA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1SHF6 HECTD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 526 (190.2 bits), Expect = 7.6e-49, P = 7.6e-49
 Identities = 101/114 (88%), Positives = 105/114 (92%)

Query:     8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             RQLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct:   364 RQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 423

Query:    68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct:   424 RGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 474

GO:0001843 "neural tube closure" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E2RGH9 HECTD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 526 (190.2 bits), Expect = 7.6e-49, P = 7.6e-49
 Identities = 101/114 (88%), Positives = 105/114 (92%)

Query:     8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             RQLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct:   363 RQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 422

Query:    68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct:   423 RGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 473

GO:0001843 "neural tube closure" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E1C040 HECTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 526 (190.2 bits), Expect = 7.6e-49, P = 7.6e-49
 Identities = 101/114 (88%), Positives = 105/114 (92%)

Query:     8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             RQLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct:   364 RQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 423

Query:    68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct:   424 RGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 474

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

UNIPROTKB|E1BLD1 HECTD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 526 (190.2 bits), Expect = 7.6e-49, P = 7.6e-49
 Identities = 101/114 (88%), Positives = 105/114 (92%)

Query:     8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             RQLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct:   364 RQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 423

Query:    68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct:   424 RGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 474

GO:0001843 "neural tube closure" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q9ULT8 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)]

 Score = 526 (190.2 bits), Expect = 7.6e-49, P = 7.6e-49
 Identities = 101/114 (88%), Positives = 105/114 (92%)

Query:     8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             RQLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct:   364 RQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 423

Query:    68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct:   424 RGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 474

GO:0046872 "metal ion binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

RGD|1561653 Hectd1 "HECT domain containing E3 ubiquitin protein ligase 1" [Rattus norvegicus (taxid:10116)]

 Score = 526 (190.2 bits), Expect = 7.6e-49, P = 7.6e-49
 Identities = 101/114 (88%), Positives = 105/114 (92%)

Query:     8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             RQLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct:   364 RQLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 423

Query:    68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct:   424 RGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 474

GO:0001843 "neural tube closure" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:2384768 Hectd1 "HECT domain containing 1" [Mus musculus (taxid:10090)]

 Score = 518 (187.4 bits), Expect = 5.4e-48, P = 5.4e-48
 Identities = 101/115 (87%), Positives = 105/115 (91%)

Query:     8 RQLIECIRSKDTDALIETIDSGGV-EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 66
             RQLI+CIRSKDTDALI+ ID+G   EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV
Sbjct:   364 RQLIDCIRSKDTDALIDAIDTGAAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 423

Query:    67 NKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             N+GQRSSSLHYAACFGRP VAK LLRHGANPDLRDEDGKTPLDKARER   GH E
Sbjct:   424 NRGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARER---GHSE 475

GO:0001843 "neural tube closure" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ULT8	HECD1_HUMAN	6, ., 3, ., 2, ., -	0.8859	0.9173	0.0425	yes	N/A
Q69ZR2	HECD1_MOUSE	6, ., 3, ., 2, ., -	0.8782	0.9173	0.0423	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	121
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-16
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-09
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-08
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	6e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	5e-05
smart00248	30	smart00248, ANK, ankyrin repeats	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	0.003
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.003
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 86.7 bits (215), Expect = 4e-23
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 6/114 (5%)

Query: 10  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK- 68
           L     +   + +++ +   G +VN  D+ G+T L+ A+  G  E+V+ L E+GADVN  
Sbjct: 11  LHLAASNGHLE-VVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 69  -GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
               ++ LH AA  G   V K+LL+HGA+ + RD+DG+TPL  A      GH E
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA---AKNGHLE 120

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 77.7 bits (192), Expect = 5e-20
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 44  LNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDED 103
           L+ A+  G  E+V+ L E+GADVN G   ++LH AA  G   + K+LL HGA+ + +D+D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 104 GKTPLDKARERVDEGHRE 121
           G T L  A      G+ E
Sbjct: 61  GNTALHLA---ARNGNLE 75

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 75.5 bits (186), Expect = 9e-19
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 34  NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGRPSVAKV 89
           N  D+ G+T L+ A++ G  E+V+ L E GADVN     G+  + LH AA  G   + K+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR--TPLHLAAKNGHLEIVKL 58

Query: 90  LLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           LL  GA+ + RD+DG TPL  A      G+ +
Sbjct: 59  LLEKGADVNARDKDGNTPLHLA---ARNGNLD 87

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.3 bits (165), Expect = 6e-16
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 10  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 69
           L    ++ + + +   ++ G  +VN  D    T L+ A+  G  E+V+ L E GADVN  
Sbjct: 1   LHLAAKNGNLELVKLLLEKG-ADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 70  QRS--SSLHYAACFGRPSVAKVLLRHGANPDLRD 101
            +   ++LH AA  G   + K+LL HGA+ +L+D
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 59.9 bits (145), Expect = 9e-12
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 14  IRSKDTDALIET-----IDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           I  K  D +IE      + S G ++N  D   G T L++A+    Q + E L   GA+VN
Sbjct: 136 IDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN 195

Query: 68  KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
              +  +S LH+A       +  +LL +GA+ D RD+ G TPL  +    
Sbjct: 196 IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYC 245

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 13  CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ-----EMVEFLCERGADVN 67
              SK  D +++ + + G +VN  D  G T L+ A+  G       E+ + L E GAD++
Sbjct: 79  SAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD 138

Query: 68  KGQRS-----SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
                     + LH+AA  G   + ++LL  GA+P+ R+  G T LD
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALD 185

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 17  KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQE--MVEFLCERGADVNKGQRS-- 72
           K    ++  +   G +    D +G T L+  +   + +  +V  L   G  +N   R   
Sbjct: 199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ 258

Query: 73  SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
           + LHYAA F  P   + L+  GA+ +    DG TPL   
Sbjct: 259 TPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM 297

Length = 471

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.4 bits (126), Expect = 7e-10
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVA 87
           G +VN  D  G T L+ A+  G  ++V+ L + GADVN       + LH AA  G   V 
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVV 122

Query: 88  KVLL 91
           K+LL
Sbjct: 123 KLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 21/120 (17%)

Query: 10  LIECIRSKDTDA-LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ--EMVEFLCERGADV 66
           L+  I  K     ++E +   G  VN  +  G+ LL+          ++++ L ++G D+
Sbjct: 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI 169

Query: 67  NKGQR------------------SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
           N   R                   + LHYA     P   K LL  GANP+L ++ G TPL
Sbjct: 170 NAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL 229

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.3 bits (118), Expect = 3e-09
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 61  ERGADVNK---GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
           E G        G  ++ LH AA +G   + + LL+ G + +LRD DG T LD A
Sbjct: 3   EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 48  SAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGK 105
           +A G       L   GAD N       + LH A   G   V +VLL  GA+P L D+DGK
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149

Query: 106 TPLDKARE 113
           TPL+ A E
Sbjct: 150 TPLELAEE 157

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 52  TQEMVEFLCERGADVNK--GQRSSSLH-YAACFG-RPSVAKVLLRHGANPDLRDEDGKTP 107
           T ++++ L + GADVN       + LH Y + F   P V ++LLR GA+ +  D  G TP
Sbjct: 96  TLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTP 155

Query: 108 LD 109
           L 
Sbjct: 156 LA 157

Length = 471

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 54  EMVEFLCERGADVN---KGQRSSSLHYAACFGR---PSVAKVLLRHGANPDLRDEDGKTP 107
           E+++FL E GADVN   +    S+LH+   F +   P + K+L+  G++    DEDGK  
Sbjct: 67  EILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNL 126

Query: 108 L 108
           L
Sbjct: 127 L 127

Length = 209

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQ---EMVEFLCERGADVNKGQRSSS--LHYAACFG-R 83
           G +VNF  + G+T L+    + ++   ++V  L E GADVN  +R     LH        
Sbjct: 37  GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATT 96

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPL 108
             V K+L++ GA+ + +D+ G+TPL
Sbjct: 97  LDVIKLLIKAGADVNAKDKVGRTPL 121

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.3 bits (108), Expect = 9e-08
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 71  RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
             ++LH AA  GR  + K LL  G + +  DEDG T L  A
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 6/108 (5%)

Query: 11  IECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ 70
           I CI  KD    I+TI   G++VN  D   +T L++A   G  E ++ L E GADVN   
Sbjct: 99  IPCI-EKDM---IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED 154

Query: 71  RSSS--LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
            +    +H A       + K+LL  GA  +++D +G++PL  A E  D
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGD 202

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 10/108 (9%)

Query: 7   KRQLIECIRSKDTDALIETIDSGGVEVNFMDDV----GQTLLNWASAFGTQEMVEFLCER 62
           + +L + +   D  A+ E +D G     F DDV    G T L+ A+     ++++ L  R
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLG----KFADDVFYKDGMTPLHLATILKKLDIMKLLIAR 124

Query: 63  GAD--VNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
           GAD  +    + S LH A   G     ++L+ H A  D+ D  G TPL
Sbjct: 125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPL 172

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 14/90 (15%)

Query: 34  NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS----LHYAACFGRPS---- 85
              D  G+  L+ A++ G  ++V+ L   GADVN   + +     LH AA  G P     
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVN--AKDADGDTPLHLAALNGNPPEGNI 124

Query: 86  -VAKVLLRHGA---NPDLRDEDGKTPLDKA 111
            VAK+LL  GA     +LRDEDG TPL  A
Sbjct: 125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWA 154

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 14  IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQR 71
           I+  D ++ I+ +   G +VN  DD G   ++ A      ++++ L E+GA  +V     
Sbjct: 132 IKKGDLES-IKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG 190

Query: 72  SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
            S LH AA +G  +  K+L+ HG +   + ++G TPL  A
Sbjct: 191 ESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.3 bits (103), Expect = 3e-07
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 75  LHYAACFGRPSVAKVLLRHGANPDLRDE 102
           LH AA  G   V K+LL  GA+ + RD+
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 22/112 (19%)

Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASA--FGTQEMVEFLCERGADVN--KGQRSSSLHY 77
           +++ +   G  VN  D+ G T L +A +    +  +VE+L + GA+VN       + LH 
Sbjct: 88  IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL 147

Query: 78  AACFGRP--SVAKVLLRHGAN----------------PDLRDEDGKTPLDKA 111
                +    + K+L+  G +                 +++D  G TPL  A
Sbjct: 148 YLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYA 199

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.7 bits (96), Expect = 5e-06
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 42 TLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLL 91
          T L+ A+  G  E+V++L E+G D+N+     +++LH AA  G   V K+LL
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 6   PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ-EMVEFLCERGA 64
           P    ++         L+E     G   +  D  G T L+ +  +    ++++ L E G 
Sbjct: 204 PLHHAVKHYNKPIVHILLEN----GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGV 259

Query: 65  DVNKGQRS----SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
           DVN  +      ++LH +         K+LL +GA+ +  +    TPL  A
Sbjct: 260 DVN-AKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 23/109 (21%)

Query: 21  ALIETIDSGGVEVNFMDD-------VGQTLLNWASAFGTQEMVEFLCERGADVN------ 67
             +         +   +D        G T L+ A+     E+V+ L ERGA V       
Sbjct: 102 LHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGD 161

Query: 68  ---KGQRSSSLHY-------AACFGRPSVAKVLLRHGANPDLRDEDGKT 106
              K Q   S ++       AAC G PS+  +L    A+    D  G T
Sbjct: 162 FFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNT 210

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 16/117 (13%)

Query: 13  CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN-WASAFGTQE-MVEFLCERGADVNKGQ 70
            + +  T  +I+ +   G +VN  D VG+T L+ + S F     ++  L  +GADVN   
Sbjct: 90  YLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA-- 147

Query: 71  RSSSLHYA-ACFGR-----PSVAKVLLRHGANPDLRDEDGKTPLD------KARERV 115
                    A   +       + ++L+  GA+    D+  ++ L       K R R+
Sbjct: 148 LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARI 204

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.9 bits (89), Expect = 4e-05
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVN 67
          G T L+ A+  G  E+V+ L E GADVN
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLEAGADVN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.6 bits (88), Expect = 5e-05
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVN 67
          G T L+ A+  G  E+V+ L E GAD+N
Sbjct: 2  GNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.4 bits (85), Expect = 1e-04
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 75 LHYAACFGRPSVAKVLLRHGANPDL 99
          LH AA  G   V K+LL  GA+ + 
Sbjct: 6  LHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 5   WPKRQLIECIRSKDTDALIETIDSGG---VEVNFMDDVGQTLLNWASAFGTQEMVEFLCE 61
                LI           +  + S          ++   +  L  A++     +   +  
Sbjct: 5   LSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDR 64

Query: 62  RGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
             A  +   R   LH AA  G   + K+LL  GA+ + +D DG TPL  A
Sbjct: 65  HLAARDLDGRLP-LHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLA 113

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 30  GVEVNFMDDVGQTLLNWASAFG-TQEMVEFLCERGADVNKGQR--SSSLHYAACFGR-PS 85
           G +VN  +  G+T L   +  G   E +  L   GADVN   R   + LH A+   R   
Sbjct: 297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKD 356

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARER 114
           +   LL  GAN + RD   KTP+  A  R
Sbjct: 357 IVITLLELGANVNARDYCDKTPIHYAAVR 385

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 6   PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 65
           P  Q     R+KD    + T+   G  VN  D   +T +++A+      ++  L + GAD
Sbjct: 344 PLHQASTLDRNKDI---VITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400

Query: 66  VNK-GQR-SSSLHYAACFGRPSVA-KVLLRHGANPDLRDEDGKTPLDKA 111
           +    Q+  ++LH+A C   P ++ K L+  GAN + +++D  TPL  A
Sbjct: 401 IEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA 449

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 10  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS-AFGTQEMVEFLCERGADVN- 67
           L++ IR++D +  +   D+G   VN +DD   T L+ AS A     +V  L ERGADVN 
Sbjct: 244 LLKAIRNEDLETSLLLYDAG-FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA 302

Query: 68  ---KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
              KG+    L     +   ++ + L+  GA+ +  D    TPL +A
Sbjct: 303 KNIKGETPLYLMAKNGYDTENI-RTLIMLGADVNAADRLYITPLHQA 348

Length = 682

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 75 LHYAACFGRPSVAKVLLRHGANPD 98
          LH AA  G   + K+LL HGA+ +
Sbjct: 6  LHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG--ADVNKGQRSSSLHYAACFGR 83
            D+GG   +        LL  AS  G   ++E L +     D+   +  + LH AA  G 
Sbjct: 514 GDNGGEHDDPNMAS--NLLTVAST-GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGY 570

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                VLL+H  N  +RD +G T L  A   +   H +
Sbjct: 571 EDCVLVLLKHACNVHIRDANGNTALWNA---ISAKHHK 605

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 55  MVEFLCERGADVNKGQRSS--SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
           + E L E GADVN         +HYAA  G   +  +LL +GA+ ++   D  + L+ A
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECA 218

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 17  KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           +D   + E +  GG +VN  D    T +++A+  G  +MV  L   GADVN
Sbjct: 155 QDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN 205

Length = 682

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 32  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++N +D  G+TLL+ A  +  Q +V  L E G+DVN
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVN 479

Length = 661

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 53  QEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL-- 108
           +  VE L  RG   N+     +  LH A+      +  +LL HGA+P+  D+  KTPL  
Sbjct: 52  ERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYY 111

Query: 109 -----DKARERVD 116
                D+  ER++
Sbjct: 112 LSGTDDEVIERIN 124

Length = 446

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGRPS 85
           GV +N  D  G T L++A      E V++L + GA+ N     G   + LH A       
Sbjct: 182 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG--DTPLHIAILNNNKE 239

Query: 86  VAKVLLRHGAN 96
           + K+LL +G +
Sbjct: 240 IFKLLLNNGPS 250

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
KOG4412|consensus	226		99.95
KOG4412|consensus	226		99.95
KOG0509|consensus	600		99.91
KOG0512|consensus	228		99.91
KOG0509|consensus	600		99.91
PHA02791	284	ankyrin-like protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02791	284	ankyrin-like protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02875	413	ankyrin repeat protein; Provisional	99.88
PHA02875	413	ankyrin repeat protein; Provisional	99.87
PHA02874	434	ankyrin repeat protein; Provisional	99.87
PHA02859	209	ankyrin repeat protein; Provisional	99.87
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.86
PHA02874	434	ankyrin repeat protein; Provisional	99.86
KOG0508|consensus	615		99.85
PHA02859	209	ankyrin repeat protein; Provisional	99.85
KOG4214|consensus	117		99.85
PHA03100	480	ankyrin repeat protein; Provisional	99.85
KOG0502|consensus	296		99.85
PHA02878	477	ankyrin repeat protein; Provisional	99.85
KOG0508|consensus	615		99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
PHA03100	480	ankyrin repeat protein; Provisional	99.84
PHA03095	471	ankyrin-like protein; Provisional	99.84
PHA03095	471	ankyrin-like protein; Provisional	99.84
PHA02876	682	ankyrin repeat protein; Provisional	99.84
PHA02798	489	ankyrin-like protein; Provisional	99.83
PHA02946	446	ankyin-like protein; Provisional	99.83
PHA02989	494	ankyrin repeat protein; Provisional	99.83
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PHA02795	437	ankyrin-like protein; Provisional	99.82
KOG4177|consensus	1143		99.82
PHA02876	682	ankyrin repeat protein; Provisional	99.81
KOG0510|consensus	929		99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.81
KOG0514|consensus	452		99.81
PHA02946	446	ankyin-like protein; Provisional	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.8
KOG0195|consensus	448		99.8
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.8
PHA02798	489	ankyrin-like protein; Provisional	99.78
PHA02795	437	ankyrin-like protein; Provisional	99.77
KOG0512|consensus	228		99.77
KOG0195|consensus	448		99.77
PHA02989	494	ankyrin repeat protein; Provisional	99.76
KOG0510|consensus	929		99.76
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
PHA02792	631	ankyrin-like protein; Provisional	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.73
PHA02736	154	Viral ankyrin protein; Provisional	99.73
PHA02730	672	ankyrin-like protein; Provisional	99.71
PHA02917	661	ankyrin-like protein; Provisional	99.71
KOG1710|consensus	396		99.7
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.69
KOG0502|consensus	296		99.69
KOG4177|consensus	1143		99.69
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.69
KOG0505|consensus	527		99.69
PHA02741	169	hypothetical protein; Provisional	99.68
KOG0507|consensus	854		99.67
PHA02730	672	ankyrin-like protein; Provisional	99.67
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.66
PHA02884	300	ankyrin repeat protein; Provisional	99.66
PHA02792	631	ankyrin-like protein; Provisional	99.66
KOG0514|consensus	452		99.66
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.65
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.64
KOG0515|consensus	752		99.62
KOG0505|consensus	527		99.61
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.59
KOG3676|consensus	782		99.57
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.54
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.5
KOG0507|consensus	854		99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.48
KOG3676|consensus	782		99.48
KOG4214|consensus	117		99.47
KOG0783|consensus	1267		99.41
KOG0515|consensus	752		99.32
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.26
KOG1710|consensus	396		99.24
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.23
PF13606	30	Ank_3: Ankyrin repeat	99.18
KOG0506|consensus	622		99.17
KOG0782|consensus	1004		99.16
KOG0818|consensus	669		99.15
KOG4369|consensus	2131		99.11
KOG0818|consensus	669		99.05
KOG0705|consensus	749		99.05
PF13606	30	Ank_3: Ankyrin repeat	98.99
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.89
KOG4369|consensus	2131		98.87
KOG0522|consensus	560		98.83
KOG0522|consensus	560		98.76
KOG0506|consensus	622		98.75
KOG0783|consensus	1267		98.64
KOG3609|consensus	822		98.63
KOG0705|consensus	749		98.59
KOG0521|consensus	785		98.47
KOG0511|consensus	516		98.45
KOG0511|consensus	516		98.4
KOG2384|consensus	223		98.33
KOG0521|consensus	785		98.08
KOG0782|consensus	1004		98.05
KOG2384|consensus	223		98.0
KOG3609|consensus	822		98.0
KOG0520|consensus	975		97.99
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.8
KOG2505|consensus	591		97.8
KOG0520|consensus	975		97.55
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.48
KOG2505|consensus	591		97.2
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.72
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.65
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.01
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	87.64
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	80.67

>KOG4412|consensus

Probab=99.95  E-value=6.5e-28  Score=136.35  Aligned_cols=107  Identities=29%  Similarity=0.401  Sum_probs=61.3

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--g~t~l~~a~~~~   82 (121)
                      .+.+|||.|+..|+.+.|+.|+.+.+.+++..+..|.|+||||+..|..+++++|+..|+.++.++  |.||||-|+..|
T Consensus        71 aGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavG  150 (226)
T KOG4412|consen   71 AGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVG  150 (226)
T ss_pred             cCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhcc
Confidence            445555555555555555555555555555555555555555555555555555555555544332  555666555555


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHH
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKA  111 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a  111 (121)
                      ..+++++|+..|+.++.+|.+|+||||.|
T Consensus       151 klkvie~Li~~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  151 KLKVIEYLISQGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             chhhHHHHHhcCCCCCcccccCccHHHHH
Confidence            55566666655555566666666665555

>KOG4412|consensus

Probab=99.95  E-value=3.8e-27  Score=133.27  Aligned_cols=111  Identities=32%  Similarity=0.396  Sum_probs=102.7

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCC--CCCccHHHHHHH
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~--~~g~t~l~~a~~   80 (121)
                      ..++.++|+|+..|..+.+..|+.+.+..++.+|..||||||.|+..|+.++++.|+.+ |++++.  +.|.|+||+|+.
T Consensus        36 qD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAag  115 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAG  115 (226)
T ss_pred             ccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhc
Confidence            46788999999999998888877787888998999999999999999999999999988 888874  458999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .|..+++.+|++.|+.++++|..|.||||.|+..
T Consensus       116 K~r~eIaqlLle~ga~i~~kD~~~qtplHRAAav  149 (226)
T KOG4412|consen  116 KGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAV  149 (226)
T ss_pred             CChhhHHHHHHhcCCCCcccccccCchhHHHHhc
Confidence            9999999999999999999999999999999988

>KOG0509|consensus

Probab=99.91  E-value=6.4e-24  Score=138.36  Aligned_cols=108  Identities=36%  Similarity=0.554  Sum_probs=80.3

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC---CccHHHHHHHhCC
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ---RSSSLHYAACFGR   83 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~---g~t~l~~a~~~~~   83 (121)
                      -..++.|+..|+++.|+.+++..+.+++..|.+|.++||+|+.+++.+++++|+++|++++...   +.||||||+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            3446677777777777777766677777777777777777777777777777777777776544   3577777777777


Q ss_pred             HHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         84 PSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        84 ~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..++.+|+++||+++++|.+|.+|+|.|++.
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~  155 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQF  155 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHh
Confidence            7777777777777777777777777777776

>KOG0512|consensus

Probab=99.91  E-value=1.2e-23  Score=118.61  Aligned_cols=111  Identities=25%  Similarity=0.234  Sum_probs=103.0

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.+.+++|+..+.+..|+.+|......+|.+|.+++||||-|+.+|+.+++..|+..|+++.+  ..|+||||.||..+
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence            4567789999999999999999998888999999999999999999999999999999999875  45999999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      +.+|+-+|+++|+++++......||||+++-..
T Consensus       142 N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~r  174 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNR  174 (228)
T ss_pred             chhHHHHHHhccCcccccccccchhhHHhhccc
Confidence            999999999999999999999999999998753

>KOG0509|consensus

Probab=99.91  E-value=2.2e-23  Score=135.94  Aligned_cols=109  Identities=33%  Similarity=0.434  Sum_probs=67.7

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      .+-..+|+|+.++.. +|.++|.++|+++|... ..+.||||+|+++|+..++..|++.|+++..  ..|.+++|.|++.
T Consensus        77 ~g~tlLHWAAiNNrl-~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~  155 (600)
T KOG0509|consen   77 EGVTLLHWAAINNRL-DVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF  155 (600)
T ss_pred             CCccceeHHHHcCcH-HHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh
Confidence            334456666666666 34444555566666555 4456666666666666666666666666653  3366666666666


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ++..++-+|+.++++++.+|.+|.|||++|+.+
T Consensus       156 ~~~~~vayll~~~~d~d~~D~~grTpLmwAayk  188 (600)
T KOG0509|consen  156 GHTALVAYLLSKGADIDLRDNNGRTPLMWAAYK  188 (600)
T ss_pred             CchHHHHHHHHhcccCCCcCCCCCCHHHHHHHh
Confidence            666666666666666666666666666666665

>PHA02791 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.8e-22  Score=124.73  Aligned_cols=110  Identities=13%  Similarity=0.087  Sum_probs=76.0

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCc-hHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQ-TLLNWASAFGTQEMVEFLCERGADVNK-GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~l~~~~~~~~~-~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..++.+.+ ++|...+++++..+..|+ ||||+|+..++.+++++|++.+....+ ..|.||||+|+..
T Consensus        92 ~~G~TpLh~Aa~~g~~eiv-k~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~  170 (284)
T PHA02791         92 DKGNTALYYAVDSGNMQTV-KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKN  170 (284)
T ss_pred             CCCCCHHHHHHHcCCHHHH-HHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHc
Confidence            4556667777777666444 334455666666666653 677777777777777777766544322 2367888888888


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCH-HHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTP-LDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tp-l~~a~~~  114 (121)
                      |+.+++++|++.|++++.++..|.|| ||+|+..
T Consensus       171 g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~  204 (284)
T PHA02791        171 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN  204 (284)
T ss_pred             CCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHc
Confidence            88888888888888888888888876 8888877

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=4.2e-22  Score=123.45  Aligned_cols=110  Identities=22%  Similarity=0.223  Sum_probs=93.9

Q ss_pred             CCchHH-HHHHHHhCChHHHHHHHHhCCCCCcccc----CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC---CCccHH
Q psy15272          4 CWPKRQ-LIECIRSKDTDALIETIDSGGVEVNFMD----DVGQTLLNWASAFGTQEMVEFLCERGADVNKG---QRSSSL   75 (121)
Q Consensus         4 ~~~~~~-l~~a~~~~~~~~v~~ll~~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~---~g~t~l   75 (121)
                      ..+.++ ++.|+..++. ++.++|.+.|++++.++    ..|.||||+|+..++.+++++|++.|++++..   .|.|||
T Consensus        30 ~~~~~~lL~~A~~~~~~-eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL  108 (300)
T PHA02884         30 KICIANILYSSIKFHYT-DIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL  108 (300)
T ss_pred             cCCCCHHHHHHHHcCCH-HHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence            334444 4556666666 56666778899999864    58999999999999999999999999999853   488999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         76 HYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        76 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+|+..++.+++++|+..|++++.+|..|.||+++|++.
T Consensus       109 h~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~  147 (300)
T PHA02884        109 YISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMI  147 (300)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh
Confidence            999999999999999999999999999999999999875

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=2.6e-22  Score=116.25  Aligned_cols=113  Identities=24%  Similarity=0.284  Sum_probs=98.6

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHH-----hCCCCCccccCCCchHHHHHHHcCC----HHHHHHHHHcCCCCCCC---C
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETID-----SGGVEVNFMDDVGQTLLNWASAFGT----QEMVEFLCERGADVNKG---Q   70 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~-----~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~~---~   70 (121)
                      +..+.++|+.|+..|+.+.+..++.     ..+.+++.+|..|.||||+|+..++    .+++++|+..|++++.+   .
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~   97 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE   97 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC
Confidence            3567889999999999988877653     2357788899999999999999998    47889999999988743   5


Q ss_pred             CccHHHHHHHhCCHHHHHHHHH-cCCCCCccCcCCCCHHHHHHhhc
Q psy15272         71 RSSSLHYAACFGRPSVAKVLLR-HGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        71 g~t~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      |.||||+|+..++.+++++|+. .|++++.+|..|.|||+.|...+
T Consensus        98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~  143 (169)
T PHA02741         98 GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNE  143 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCC
Confidence            8999999999999999999998 59999999999999999998873

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=5.1e-22  Score=122.77  Aligned_cols=108  Identities=17%  Similarity=0.197  Sum_probs=60.7

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..|+.+.+.. |...+.+++..+  +.||||+|+..++.++++.|+..|++++  +..|.||||+|+..
T Consensus        28 ~~G~TpLh~Aa~~g~~eiv~~-Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~  104 (284)
T PHA02791         28 VHGHSALYYAIADNNVRLVCT-LLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS  104 (284)
T ss_pred             CCCCcHHHHHHHcCCHHHHHH-HHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            345556666666665543333 334455554432  4566666666666666666666665554  23355666666666


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCC-CHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGK-TPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~-tpl~~a~~~  114 (121)
                      |+.+++++|++.|++++.++..|. ||||+|+..
T Consensus       105 g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~  138 (284)
T PHA02791        105 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML  138 (284)
T ss_pred             CCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHc
Confidence            666666666666666655555553 566665554

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=3.7e-22  Score=115.27  Aligned_cols=111  Identities=22%  Similarity=0.238  Sum_probs=95.7

Q ss_pred             CchHHHHHHHHhCChHHHHH---HHHhCCCCCccccCCCchHHHHHHHcCCHH---HHHHHHHcCCCCCCC---CCccHH
Q psy15272          5 WPKRQLIECIRSKDTDALIE---TIDSGGVEVNFMDDVGQTLLNWASAFGTQE---MVEFLCERGADVNKG---QRSSSL   75 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~---ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~l~~~~~~~~~~---~g~t~l   75 (121)
                      .+...++.|++.|+.+.+.+   ++...+..++..|..|+||||+|+..+..+   ++++|++.|++++.+   .|.|||
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpL   98 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLL   98 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHH
Confidence            45667999999999976554   455678888888999999999999998765   478999999988743   488999


Q ss_pred             HHHHHhCCHHHHHHHHH-cCCCCCccCcCCCCHHHHHHhhc
Q psy15272         76 HYAACFGRPSVAKVLLR-HGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        76 ~~a~~~~~~~~~~~L~~-~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      |+|+..++.+++++|+. .|++++.++..|.||||+|+..+
T Consensus        99 h~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~  139 (166)
T PHA02743         99 HIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMR  139 (166)
T ss_pred             HHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcC
Confidence            99999999999999995 79999999999999999998873

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.2e-21  Score=127.15  Aligned_cols=106  Identities=28%  Similarity=0.364  Sum_probs=52.7

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCCC-ccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCH
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVEV-NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP   84 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~   84 (121)
                      ++++.|+..|+.+.+..++.. +... +..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..|+.
T Consensus        70 t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~  148 (413)
T PHA02875         70 SELHDAVEEGDVKAVEELLDL-GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI  148 (413)
T ss_pred             cHHHHHHHCCCHHHHHHHHHc-CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            344444444444443333322 2222 22334455555555555555555555555555442  2355555555555555


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +++++|++.|++++.+|..|.||||+|+..
T Consensus       149 ~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~  178 (413)
T PHA02875        149 KGIELLIDHKACLDIEDCCGCTPLIIAMAK  178 (413)
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Confidence            555555555555555555555555555554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.87  E-value=4.9e-21  Score=124.31  Aligned_cols=111  Identities=22%  Similarity=0.178  Sum_probs=97.9

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..++.+.+ ++|.+.|++++..+..|.||||+|+..++.+++++|++.|++++  +..|.||||+|+..
T Consensus       100 ~~g~tpL~~A~~~~~~~iv-~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~  178 (413)
T PHA02875        100 KDGMTPLHLATILKKLDIM-KLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAK  178 (413)
T ss_pred             CCCCCHHHHHHHhCCHHHH-HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc
Confidence            3467899999999998555 55667799999999999999999999999999999999998876  44589999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCC-CHHHHHHhhc
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGK-TPLDKARERV  115 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~-tpl~~a~~~~  115 (121)
                      |+.+++++|++.|++++..+..|. ||+++|+..+
T Consensus       179 g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~  213 (413)
T PHA02875        179 GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENN  213 (413)
T ss_pred             CCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcC
Confidence            999999999999999999998875 7888898873

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.87  E-value=5.7e-21  Score=124.70  Aligned_cols=111  Identities=28%  Similarity=0.334  Sum_probs=97.2

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..|+.+.+. +|.+.|.+++..|..|.||||+|+..+..+++++|++.|++++  +..|.||||+|+.
T Consensus       121 ~~~g~T~Lh~A~~~~~~~~v~-~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~  199 (434)
T PHA02874        121 DAELKTFLHYAIKKGDLESIK-MLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE  199 (434)
T ss_pred             CCCCccHHHHHHHCCCHHHHH-HHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            346778999999999996665 4556789999999999999999999999999999999998776  4458999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .|+.+++++|++.|++++.++..|.||||.|+..
T Consensus       200 ~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~  233 (434)
T PHA02874        200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH  233 (434)
T ss_pred             cCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHC
Confidence            9999999999999999888888888888888764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.3e-20  Score=112.49  Aligned_cols=92  Identities=13%  Similarity=0.162  Sum_probs=43.3

Q ss_pred             HHHHHHhCCCCCccccCCCchHHHHHHHc--CCHHHHHHHHHcCCCCCC--CCCccHHHH-HHHhCCHHHHHHHHHcCCC
Q psy15272         22 LIETIDSGGVEVNFMDDVGQTLLNWASAF--GTQEMVEFLCERGADVNK--GQRSSSLHY-AACFGRPSVAKVLLRHGAN   96 (121)
Q Consensus        22 v~~ll~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~l~~~~~~~~~--~~g~t~l~~-a~~~~~~~~~~~L~~~~~~   96 (121)
                      +.++|.++|++++..|..|.||||+|+..  ++.+++++|++.|++++.  ..|.||||. ++..++.+++++|++.|++
T Consensus       105 iv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad  184 (209)
T PHA02859        105 ILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID  184 (209)
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC
Confidence            33334444555555555555555544332  344455555555544432  224455553 2334445555555555555


Q ss_pred             CCccCcCCCCHHHHHHh
Q psy15272         97 PDLRDEDGKTPLDKARE  113 (121)
Q Consensus        97 ~~~~~~~g~tpl~~a~~  113 (121)
                      ++.+|..|.||+++|..
T Consensus       185 i~~~d~~g~tpl~la~~  201 (209)
T PHA02859        185 INETNKSGYNCYDLIKF  201 (209)
T ss_pred             CCCCCCCCCCHHHHHhh
Confidence            55555555555555444

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=5.7e-21  Score=132.47  Aligned_cols=107  Identities=24%  Similarity=0.302  Sum_probs=77.7

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHH--------
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLH--------   76 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~--------   76 (121)
                      ..+++.|+..|+.+.+..++ +.|.+++..|..|.||||+|+..|+.++++.|++.|++++.  ..|.||||        
T Consensus       526 ~~~L~~Aa~~g~~~~l~~Ll-~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~  604 (823)
T PLN03192        526 ASNLLTVASTGNAALLEELL-KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH  604 (823)
T ss_pred             hhHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence            45566777777765554433 45677777777777777777777777777777777766653  33666666        


Q ss_pred             -----------------------HHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         77 -----------------------YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        77 -----------------------~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                                             .|+..|+.+++++|++.|++++.+|..|.||||+|++.
T Consensus       605 ~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~  665 (823)
T PLN03192        605 KIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAE  665 (823)
T ss_pred             HHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence                                   55556667777888899999999999999999999987

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.6e-20  Score=123.86  Aligned_cols=105  Identities=25%  Similarity=0.309  Sum_probs=65.2

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh-C
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF-G   82 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~-~   82 (121)
                      +.++++.|+..|+.+.+ ++|.+.|++++..|..|.||||.|+..++.++++.|++.|++++.  ..|.||||+|+.. +
T Consensus       168 g~tpLh~A~~~~~~~iv-~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~  246 (477)
T PHA02878        168 GNTALHYATENKDQRLT-ELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK  246 (477)
T ss_pred             CCCHHHHHHhCCCHHHH-HHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcC
Confidence            55666667766666444 334445666666666667777777766667777777666666553  3366666666654 4


Q ss_pred             CHHHHHHHHHcCCCCCccCc-CCCCHHHHH
Q psy15272         83 RPSVAKVLLRHGANPDLRDE-DGKTPLDKA  111 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~-~g~tpl~~a  111 (121)
                      +.+++++|++.|++++.++. .|.||||+|
T Consensus       247 ~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        247 DYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            56666666666666665553 556666655

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.8e-20  Score=122.33  Aligned_cols=109  Identities=26%  Similarity=0.387  Sum_probs=68.9

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCC------------------
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV------------------   66 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~------------------   66 (121)
                      .+.++++.|+..|+.+.|.. |.+.|++++..+..|.+|||.|+..++.+++++|++.|+++                  
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~-Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVEL-FIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHH-HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            44566777777777755543 44556666666666666777766666666666666555332                  


Q ss_pred             -----C--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         67 -----N--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        67 -----~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                           +  +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~  167 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKH  167 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHC
Confidence                 1  22356666666666666666666666666666666666666666655

>KOG0508|consensus

Probab=99.85  E-value=2e-21  Score=123.86  Aligned_cols=106  Identities=28%  Similarity=0.379  Sum_probs=50.4

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CccHHHHHHHhCCH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAACFGRP   84 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--g~t~l~~a~~~~~~   84 (121)
                      .+|+..||..|+++.|+.|+ ++++|+++.|..|.|.||.|+..|+.+++++|++.|++++.+.  |.|+||.+++.|++
T Consensus       118 StPLraACfDG~leivKyLv-E~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLV-EHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             CccHHHHHhcchhHHHHHHH-HcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccH
Confidence            34444455555554433333 3344555555555555555555555555555555555444332  44555555555555


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +++++|+..|+.++. |..|.|||..|+..
T Consensus       197 divq~Ll~~ga~i~~-d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  197 DIVQLLLKHGAKIDV-DGHGMTPLLLAAVT  225 (615)
T ss_pred             HHHHHHHhCCceeee-cCCCCchHHHHhhh
Confidence            555555555444433 23355555544444

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.85  E-value=5.7e-20  Score=109.67  Aligned_cols=107  Identities=21%  Similarity=0.333  Sum_probs=75.6

Q ss_pred             CCchHHHHHHHHhC--ChHHHHHHHHhCCCCCcccc-CCCchHHHHHHHc---CCHHHHHHHHHcCCCCCC--CCCccHH
Q psy15272          4 CWPKRQLIECIRSK--DTDALIETIDSGGVEVNFMD-DVGQTLLNWASAF---GTQEMVEFLCERGADVNK--GQRSSSL   75 (121)
Q Consensus         4 ~~~~~~l~~a~~~~--~~~~v~~ll~~~~~~~~~~~-~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~--~~g~t~l   75 (121)
                      ..+.++++.|+..+  +. ++.++|.+.|++++..+ ..|.||||+|+..   +..++++.|++.|++++.  ..|.|||
T Consensus        49 ~~g~TpLh~a~~~~~~~~-eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpL  127 (209)
T PHA02859         49 DLYETPIFSCLEKDKVNV-EILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLL  127 (209)
T ss_pred             ccCCCHHHHHHHcCCCCH-HHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            45667777777654  44 45555666677887775 4677888876653   357788888888877763  3477888


Q ss_pred             HHHHH--hCCHHHHHHHHHcCCCCCccCcCCCCHHHHH
Q psy15272         76 HYAAC--FGRPSVAKVLLRHGANPDLRDEDGKTPLDKA  111 (121)
Q Consensus        76 ~~a~~--~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a  111 (121)
                      |+|+.  .++.+++++|++.|++++.+|..|.||||.+
T Consensus       128 h~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~  165 (209)
T PHA02859        128 HMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSY  165 (209)
T ss_pred             HHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHH
Confidence            87764  3567888888888888888888888888854

>KOG4214|consensus

Probab=99.85  E-value=1e-20  Score=96.45  Aligned_cols=104  Identities=23%  Similarity=0.430  Sum_probs=91.6

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CccHHHHHHHhCCH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAACFGRP   84 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--g~t~l~~a~~~~~~   84 (121)
                      ...+.+++.+|.+++|++.+.+ +.+++.. ..|++|||+|+..|+.+++++|+..|+++++++  |.|||-.|++.|+.
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~-g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNE-GLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHc-cccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence            3568899999999999999887 4677643 378999999999999999999999999998655  88999999999999


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHH
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKAR  112 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~  112 (121)
                      .|+++|++.|++-..+..+|.+.+..+-
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhHHhhcc
Confidence            9999999999999999999987766543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.85  E-value=3.3e-20  Score=122.38  Aligned_cols=109  Identities=28%  Similarity=0.388  Sum_probs=62.2

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCC------chHHHHHHHcCC--HHHHHHHHHcCCCCCC--CCCccH
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVG------QTLLNWASAFGT--QEMVEFLCERGADVNK--GQRSSS   74 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~------~~~l~~a~~~~~--~~~~~~l~~~~~~~~~--~~g~t~   74 (121)
                      .+.++++.|+..|+.+.+ ++|.+.|++++..+..+      .+|+|.|+..+.  .+++++|++.|++++.  ..|.||
T Consensus       175 ~g~tpL~~A~~~~~~~iv-~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~Tp  253 (480)
T PHA03100        175 YGYTPLHIAVEKGNIDVI-KFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTP  253 (480)
T ss_pred             CCCCHHHHHHHhCCHHHH-HHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            344555555555554332 33334455555544444      555555555555  5555555555555442  235666


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         75 LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        75 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ||+|+..++.+++++|++.|++++.++..|.||+++|+..
T Consensus       254 L~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        254 LHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN  293 (480)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh
Confidence            6666666666666666666666666666666666666655

>KOG0502|consensus

Probab=99.85  E-value=7e-21  Score=111.17  Aligned_cols=112  Identities=21%  Similarity=0.222  Sum_probs=102.4

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~   80 (121)
                      +.++.+++++|+.+|+++.| ++|+..|++++...+...++|.+|++.|..++++.|+.++++++  +-+|-|||-+|++
T Consensus       157 De~GfTpLiWAaa~G~i~vV-~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvr  235 (296)
T KOG0502|consen  157 DEFGFTPLIWAAAKGHIPVV-QFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVR  235 (296)
T ss_pred             cccCchHhHHHHhcCchHHH-HHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeec
Confidence            45788999999999999555 56667799999999999999999999999999999999999888  4558899999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      .++.+|++.|+..|++++.-+..|++++..|+..+
T Consensus       236 gnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValG  270 (296)
T KOG0502|consen  236 GNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALG  270 (296)
T ss_pred             CChHHHHHHHHhcCCCcccccccCCcHHHHHHHhh
Confidence            99999999999999999999999999999998873

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.85  E-value=5.4e-20  Score=121.39  Aligned_cols=109  Identities=21%  Similarity=0.290  Sum_probs=96.2

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHc-CCHHHHHHHHHcCCCCCCC---CCccHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAF-GTQEMVEFLCERGADVNKG---QRSSSLHYA   78 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~l~~~~~~~~~~---~g~t~l~~a   78 (121)
                      +..+.++++.|+..++.+.+ ++|...|++++.+|..|.||||+|+.. +..++++.|++.|++++.+   .|.||||+|
T Consensus       198 d~~g~tpLh~A~~~~~~~iv-~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        198 DKTNNSPLHHAVKHYNKPIV-HILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             CCCCCCHHHHHHHhCCHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            45678899999999998555 556677999999999999999999976 7899999999999998743   489999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        79 ~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                        .++.+++++|++.|++++.+|..|.|||++|+..
T Consensus       277 --~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        277 --IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             --ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence              4678999999999999999999999999999864

>KOG0508|consensus

Probab=99.85  E-value=3.6e-21  Score=122.67  Aligned_cols=111  Identities=25%  Similarity=0.313  Sum_probs=96.4

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGR   83 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~   83 (121)
                      +-+++..|+..|+++.| ++|..+++++|.......|||..||.-|+.+++++|++.|++++  ++.|+|.||+|+..|+
T Consensus        84 gappLWaAsaAGHl~vV-k~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh  162 (615)
T KOG0508|consen   84 GAPPLWAASAAGHLEVV-KLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH  162 (615)
T ss_pred             CCchhhHHhccCcHHHH-HHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc
Confidence            34455556677777555 55666689999888888999999999999999999999999887  5669999999999999


Q ss_pred             HHHHHHHHHcCCCCCccCcCCCCHHHHHHhhcccccC
Q psy15272         84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHR  120 (121)
Q Consensus        84 ~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~  120 (121)
                      .+++++|++.|++++.++..|+|+||.|++.   |++
T Consensus       163 ~~I~qyLle~gADvn~ks~kGNTALH~caEs---G~v  196 (615)
T KOG0508|consen  163 VDIAQYLLEQGADVNAKSYKGNTALHDCAES---GSV  196 (615)
T ss_pred             hHHHHHHHHhCCCcchhcccCchHHHhhhhc---ccH
Confidence            9999999999999999999999999999988   654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=7.7e-20  Score=95.57  Aligned_cols=87  Identities=34%  Similarity=0.588  Sum_probs=75.4

Q ss_pred             HHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCccHHHHHHHhCCHHHH
Q psy15272         10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVA   87 (121)
Q Consensus        10 l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~--~g~t~l~~a~~~~~~~~~   87 (121)
                      |+.|+..++.+.+..++. .+.+++.    |.+|+|+|+..|+.+++++|++.|++++.+  .|+||||+|+..++.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            678999999988877776 5666665    889999999999999999999999988754  699999999999999999


Q ss_pred             HHHHHcCCCCCccC
Q psy15272         88 KVLLRHGANPDLRD  101 (121)
Q Consensus        88 ~~L~~~~~~~~~~~  101 (121)
                      ++|++.|++++.+|
T Consensus        76 ~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTT-TTSS-
T ss_pred             HHHHHcCCCCCCcC
Confidence            99999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.84  E-value=5e-20  Score=121.50  Aligned_cols=110  Identities=30%  Similarity=0.448  Sum_probs=83.7

Q ss_pred             CCchHHHHHHHHhC--ChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--CC------cc
Q psy15272          4 CWPKRQLIECIRSK--DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QR------SS   73 (121)
Q Consensus         4 ~~~~~~l~~a~~~~--~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~--~g------~t   73 (121)
                      ..+.++++.|+..+  +. .+.++|.+.|.+++..+..|.||||+|+..++.+++++|++.|++++..  .|      .|
T Consensus       139 ~~g~t~L~~A~~~~~~~~-~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t  217 (480)
T PHA03100        139 SDGENLLHLYLESNKIDL-KILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFET  217 (480)
T ss_pred             CCCCcHHHHHHHcCCChH-HHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHh
Confidence            45667777777777  55 4445555667777777777888888888888888888888888776633  24      67


Q ss_pred             HHHHHHHhCC--HHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         74 SLHYAACFGR--PSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        74 ~l~~a~~~~~--~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+|.|+..++  .+++++|++.|++++.+|..|.||||+|+..
T Consensus       218 ~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~  260 (480)
T PHA03100        218 PLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYN  260 (480)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            8888888888  8888888888888888888888888888876

>PHA03095 ankyrin-like protein; Provisional

Probab=99.84  E-value=1.1e-19  Score=119.67  Aligned_cols=112  Identities=26%  Similarity=0.304  Sum_probs=88.4

Q ss_pred             CCCchHHHHHHHHhC--ChHHHHHHHHhCCCCCccccCCCchHHHHHHHcC-CHHHHHHHHHcCCCCCCC--CCccHHHH
Q psy15272          3 TCWPKRQLIECIRSK--DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFG-TQEMVEFLCERGADVNKG--QRSSSLHY   77 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~--~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~~~~~~--~g~t~l~~   77 (121)
                      +..+.++++.|+..+  +...+.++|.+.|++++..+..|.||||+|+..+ ..++++.|++.|++++..  .|.||||+
T Consensus        44 ~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~  123 (471)
T PHA03095         44 GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV  123 (471)
T ss_pred             CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            345677888888877  2335556666778888888888889999888888 588888888888887643  47888888


Q ss_pred             HH--HhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         78 AA--CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        78 a~--~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+  ..++.+++++|++.|++++.+|..|.||||+++..
T Consensus       124 a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~  162 (471)
T PHA03095        124 YLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS  162 (471)
T ss_pred             HhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            88  45677888888888888888888888888887665

>PHA03095 ankyrin-like protein; Provisional

Probab=99.84  E-value=9.7e-20  Score=119.90  Aligned_cols=111  Identities=24%  Similarity=0.312  Sum_probs=93.0

Q ss_pred             CCchHHHHHHHHh-CChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCH--HHHHHHHHcCCCCCC--CCCccHHHHH
Q psy15272          4 CWPKRQLIECIRS-KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ--EMVEFLCERGADVNK--GQRSSSLHYA   78 (121)
Q Consensus         4 ~~~~~~l~~a~~~-~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~l~~~~~~~~~--~~g~t~l~~a   78 (121)
                      ..+.++++.++.. .....+.++|.+.|.+++.+|..|.||||+|+..+..  .+++.|+..|++++.  ..|.||||+|
T Consensus       185 ~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A  264 (471)
T PHA03095        185 DRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA  264 (471)
T ss_pred             CCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            3456677776654 2334666667778999999999999999999998874  577888899988874  4599999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        79 ~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +..|+.+++++|++.|++++.++..|.||+++|+..
T Consensus       265 ~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~  300 (471)
T PHA03095        265 AVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRN  300 (471)
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh
Confidence            999999999999999999999999999999999987

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.2e-19  Score=124.06  Aligned_cols=111  Identities=23%  Similarity=0.302  Sum_probs=75.4

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..+....+..+|...|.+++.+|..|.||||+|+..++.++++.|++.|++++.  ..|.||||+|+..
T Consensus       339 ~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~  418 (682)
T PHA02876        339 RLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCG  418 (682)
T ss_pred             cCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHc
Confidence            34566777777766556666777777788887788888888888888888877777777766652  2355666666554


Q ss_pred             CC-HHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GR-PSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~-~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ++ ..++++|++.|++++.+|..|.||||+|+..
T Consensus       419 ~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~  452 (682)
T PHA02876        419 TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKK  452 (682)
T ss_pred             CCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHh
Confidence            43 3456666666666666666666666666654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.83  E-value=1.3e-19  Score=119.83  Aligned_cols=44  Identities=25%  Similarity=0.267  Sum_probs=38.9

Q ss_pred             CccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         71 RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        71 g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |.||||+|+..++.+++++|++.|++++.++..|.|||+.|++.
T Consensus       258 G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~  301 (489)
T PHA02798        258 GFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFEN  301 (489)
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHc
Confidence            67888888888888999999999999999999999999988876

>PHA02946 ankyin-like protein; Provisional

Probab=99.83  E-value=2.1e-19  Score=117.51  Aligned_cols=64  Identities=19%  Similarity=0.182  Sum_probs=45.7

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcC--CHHHHHHHHHcCCCCC
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFG--TQEMVEFLCERGADVN   67 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~~   67 (121)
                      +..+.++|+.|+..|+.+.+ ++|.++|++++.+|..|.||||+|+..+  ..++++.|++.|++++
T Consensus        69 d~~G~TpLh~Aa~~g~~eiv-~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin  134 (446)
T PHA02946         69 DDDGNYPLHIASKINNNRIV-AMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN  134 (446)
T ss_pred             CCCCCCHHHHHHHcCCHHHH-HHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcc
Confidence            34567788888888877444 4455667888888888888888877654  3567777777776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.3e-19  Score=119.95  Aligned_cols=110  Identities=19%  Similarity=0.163  Sum_probs=74.0

Q ss_pred             CCchHHHHHHHHh--CChHHHHHHHHhCCCCCcc-ccCCCchHHHHHHHcC----CHHHHHHHHHcCCCCCC--------
Q psy15272          4 CWPKRQLIECIRS--KDTDALIETIDSGGVEVNF-MDDVGQTLLNWASAFG----TQEMVEFLCERGADVNK--------   68 (121)
Q Consensus         4 ~~~~~~l~~a~~~--~~~~~v~~ll~~~~~~~~~-~~~~~~~~l~~a~~~~----~~~~~~~l~~~~~~~~~--------   68 (121)
                      ..+.++++.|+..  ++. .+.++|.+.|++++. .+..|.||+|.|+..+    +.+++++|++.|++++.        
T Consensus       143 ~~g~tpLh~a~~~~~~~~-~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~  221 (494)
T PHA02989        143 SRGYNLLHMYLESFSVKK-DVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESV  221 (494)
T ss_pred             CCCCCHHHHHHHhccCCH-HHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccH
Confidence            3455566655443  233 344445555666654 4555666666655443    56667777766654431        


Q ss_pred             --------------------------------CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         69 --------------------------------GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        69 --------------------------------~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                                                      ..|+||||+|+..++.+++++|++.|++++.+|..|.|||++|++.
T Consensus       222 l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        222 LESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKH  299 (494)
T ss_pred             HHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence                                            2277888888888888899999999999998899999999988887

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.83  E-value=1.6e-19  Score=122.90  Aligned_cols=110  Identities=15%  Similarity=0.060  Sum_probs=71.1

Q ss_pred             CCchHHHHHHHHhCCh-HHHHHHHHhCCCCCccccCCCchHHHHHH----------------------------------
Q psy15272          4 CWPKRQLIECIRSKDT-DALIETIDSGGVEVNFMDDVGQTLLNWAS----------------------------------   48 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~-~~v~~ll~~~~~~~~~~~~~~~~~l~~a~----------------------------------   48 (121)
                      ..+.+||+.|+..|+. .++.++|.+.|++++.+|..|.||||+|+                                  
T Consensus       210 ~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i  289 (764)
T PHA02716        210 NHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYI  289 (764)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHH
Confidence            4556677777777653 34555555667777777777777776542                                  


Q ss_pred             ---HcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH--hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHh
Q psy15272         49 ---AFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC--FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE  113 (121)
Q Consensus        49 ---~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~--~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~  113 (121)
                         ..++.++++.|++.|++++.  ..|+||||+|+.  .++.+++++|++.|++++.+|..|.||||+|+.
T Consensus       290 ~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        290 TLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             HHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence               23555666777777766653  346777777543  345677777777777777777777777776643

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=3.9e-20  Score=105.72  Aligned_cols=111  Identities=23%  Similarity=0.182  Sum_probs=89.0

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHh----CCCCCccccCCCchHHHHHHHcCCHH---HHHHHHHcCCCCCCC---CCcc
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDS----GGVEVNFMDDVGQTLLNWASAFGTQE---MVEFLCERGADVNKG---QRSS   73 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~----~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~l~~~~~~~~~~---~g~t   73 (121)
                      ..+.++|+.|+..|+.+.+......    .+..++..|..|.||||+|+..+..+   +++.|++.|++++.+   .|.|
T Consensus        15 ~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T   94 (154)
T PHA02736         15 IEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNT   94 (154)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCc
Confidence            4578899999999985433222111    01113356888999999999998864   678899999988743   5899


Q ss_pred             HHHHHHHhCCHHHHHHHHHc-CCCCCccCcCCCCHHHHHHhh
Q psy15272         74 SLHYAACFGRPSVAKVLLRH-GANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        74 ~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |||+|+..++.+++++|+.. |++++.++..|.||||+|+..
T Consensus        95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~  136 (154)
T PHA02736         95 PLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACER  136 (154)
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHc
Confidence            99999999999999999985 999999999999999999987

>PHA02795 ankyrin-like protein; Provisional

Probab=99.82  E-value=5.3e-19  Score=113.93  Aligned_cols=108  Identities=21%  Similarity=0.127  Sum_probs=81.0

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCc-cc-----cCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCccHHHHH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVN-FM-----DDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYA   78 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~-~~-----~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~--~g~t~l~~a   78 (121)
                      .++++.|+..++. ++.++|..+|++.. ..     +..+.+++|.+...+..++++.|++.|++++.+  .|.||||+|
T Consensus       150 ~t~lh~A~~~~~~-eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~A  228 (437)
T PHA02795        150 LNAYFRGICKKES-SVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRA  228 (437)
T ss_pred             CCHHHHHHHcCcH-HHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHH
Confidence            4566666666665 33444555565322 11     123566777777777778888888888877743  488999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        79 ~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      +..|+.+++++|++.|++++.++..|.||||+|+..+
T Consensus       229 a~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        229 IYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            9999999999999999999999999999999999874

>KOG4177|consensus

Probab=99.82  E-value=2e-19  Score=125.37  Aligned_cols=106  Identities=33%  Similarity=0.436  Sum_probs=92.6

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHH
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPS   85 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~   85 (121)
                      .+++.+...+.. .+...+..+|.+++.++.+++||||.|+.+|+.+++++|++.|++++.  +.|+||||.|+..|+.+
T Consensus       509 ~~lhla~~~~~v-~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~  587 (1143)
T KOG4177|consen  509 TPLHLAADEDTV-KVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHND  587 (1143)
T ss_pred             chhhhhhhhhhH-HHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHH
Confidence            345555555655 444455566889999999999999999999999999999999999874  45999999999999999


Q ss_pred             HHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         86 VAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        86 ~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+.+|+++|+++|..+.+|.|||++|++.
T Consensus       588 i~~LLlk~GA~vna~d~~g~TpL~iA~~l  616 (1143)
T KOG4177|consen  588 IAELLLKHGASVNAADLDGFTPLHIAVRL  616 (1143)
T ss_pred             HHHHHHHcCCCCCcccccCcchhHHHHHh
Confidence            99999999999999999999999999998

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.81  E-value=7.4e-19  Score=120.20  Aligned_cols=110  Identities=28%  Similarity=0.308  Sum_probs=71.9

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcC-CHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFG-TQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      .+.++++.|+..++...+.++|...|.+++..|..|.||||+|+..| ..++++.|+..|++++.  ..|.||||+|+..
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~  351 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL  351 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence            45667777777777766667777777777777777777777777776 36666666666665552  2356666666553


Q ss_pred             -CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 -GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 -~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                       +..+++.+|++.|++++.+|..|.||||+|+..
T Consensus       352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~  385 (682)
T PHA02876        352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVR  385 (682)
T ss_pred             CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHc
Confidence             345556666666666666666666666666554

>KOG0510|consensus

Probab=99.81  E-value=2.2e-19  Score=120.46  Aligned_cols=113  Identities=24%  Similarity=0.229  Sum_probs=98.1

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHH-cCCCC-C--CCCCccHHHH
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCE-RGADV-N--KGQRSSSLHY   77 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~-~--~~~g~t~l~~   77 (121)
                      ++..+.+|+|.|+++|+.+++.. |...|++++.++.++.||||.|+.+|...+++.|++ .+... +  +-.|+||||.
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~-Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHl  347 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDN-LLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHL  347 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHH-HHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhh
Confidence            45677899999999999988765 556699999999999999999999999999999999 44322 2  3448999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCC---ccCcCCCCHHHHHHhhc
Q psy15272         78 AACFGRPSVAKVLLRHGANPD---LRDEDGKTPLDKARERV  115 (121)
Q Consensus        78 a~~~~~~~~~~~L~~~~~~~~---~~~~~g~tpl~~a~~~~  115 (121)
                      |+..|+..++++|+..|+...   ..|.+|.||||.|+..+
T Consensus       348 aa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g  388 (929)
T KOG0510|consen  348 AAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYG  388 (929)
T ss_pred             hhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhc
Confidence            999999999999999999876   56999999999999884

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.4e-18  Score=100.32  Aligned_cols=104  Identities=22%  Similarity=0.256  Sum_probs=90.3

Q ss_pred             CCCchHHHHHHHHhCChHH--HHHHHHhCCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHH-cCCCCCC--CCCccHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDA--LIETIDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCE-RGADVNK--GQRSSSLH   76 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~--v~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~--~~g~t~l~   76 (121)
                      +..+.++++.|+..+..+.  +.++|...|.+++.++ ..|.||||+|+..++.+++++|+. .|++++.  ..|.||||
T Consensus        54 d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~  133 (166)
T PHA02743         54 DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYH  133 (166)
T ss_pred             CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHH
Confidence            4567889999999987654  3677888899999988 589999999999999999999995 7887764  45899999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCccCcCCCC
Q psy15272         77 YAACFGRPSVAKVLLRHGANPDLRDEDGKT  106 (121)
Q Consensus        77 ~a~~~~~~~~~~~L~~~~~~~~~~~~~g~t  106 (121)
                      +|+..++.+++++|++.|++++.++..|..
T Consensus       134 ~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        134 IAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            999999999999999999999998887753

>KOG0514|consensus

Probab=99.81  E-value=6.2e-20  Score=113.82  Aligned_cols=116  Identities=30%  Similarity=0.401  Sum_probs=93.1

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHc-----CCHHHHHHHHHcCCCCC---CCCCcc
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAF-----GTQEMVEFLCERGADVN---KGQRSS   73 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~l~~~~~~~~---~~~g~t   73 (121)
                      .+.-+++.+|+++.+.|++.|..||...--+++.++.-|+||+++++..     ....++..|++.| +++   .+.|.|
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQT  342 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQT  342 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcch
Confidence            3556788899999999999998888887778999899999999887765     2345677777766 333   234888


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhcccccCC
Q psy15272         74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE  121 (121)
Q Consensus        74 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~  121 (121)
                      +|++|+..|..++++.|+..|+++|++|.+|.|+|++|+++   ||.|
T Consensus       343 ALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EH---GhkE  387 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEH---GHKE  387 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhh---ChHH
Confidence            88888888888888888888888888888888888888888   6643

>PHA02946 ankyin-like protein; Provisional

Probab=99.81  E-value=1.4e-18  Score=113.74  Aligned_cols=106  Identities=15%  Similarity=0.240  Sum_probs=70.5

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcC--CHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFG--TQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      +.++++ |+..++.+ +.++|.+.|.+++..|..|.||||+|+..+  ..+++++|++.|++++.  ..|.||||+|+..
T Consensus       141 g~tpL~-aa~~~~~~-vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        141 GCGPLL-ACTDPSER-VFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             CCcHHH-HHHCCChH-HHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            344443 44445543 334455566777777777777777766543  34677777777777763  3477888888776


Q ss_pred             C--CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 G--RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~--~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +  +.+++++|+. |++++.+|..|.||||+|++.
T Consensus       219 ~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        219 TVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             CCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHh
Confidence            5  5677777774 777888888888888877765

>PHA02917 ankyrin-like protein; Provisional

Probab=99.80  E-value=1.5e-18  Score=117.81  Aligned_cols=105  Identities=20%  Similarity=0.253  Sum_probs=87.3

Q ss_pred             HHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHH--HcCCHHHHHHHHHcCCCCCCC-----CC----------
Q psy15272          9 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS--AFGTQEMVEFLCERGADVNKG-----QR----------   71 (121)
Q Consensus         9 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~l~~~~~~~~~~-----~g----------   71 (121)
                      +++.|+.+++.+. .++|...|++++..|..|+||||.++  ..++.+++++|++.|++++.+     .|          
T Consensus       106 ~~~~a~~~~~~e~-vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~  184 (661)
T PHA02917        106 FSYMKSKNVDVDL-IKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRN  184 (661)
T ss_pred             HHHHHhhcCCHHH-HHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccc
Confidence            3455666677744 45566779999999999999999543  468999999999999988632     13          


Q ss_pred             -ccHHHHHHH-----------hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         72 -SSSLHYAAC-----------FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        72 -~t~l~~a~~-----------~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                       .||||+|+.           .++.+++++|++.|++++.+|..|.||||+|++.
T Consensus       185 ~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~  239 (661)
T PHA02917        185 CGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKS  239 (661)
T ss_pred             cccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHc
Confidence             499999976           4578999999999999999999999999999988

>KOG0195|consensus

Probab=99.80  E-value=2.8e-19  Score=108.57  Aligned_cols=109  Identities=32%  Similarity=0.428  Sum_probs=93.6

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+-.++++|++.|+. .+.++|+..|+.+|..+....+|||+|+..|+.++++.|++..+++++  ..|.|||||||.
T Consensus        31 ddhgfsplhwaakegh~-aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacf  109 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHV-AIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACF  109 (448)
T ss_pred             cccCcchhhhhhhcccH-HHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhh
Confidence            34566788999998887 666777788999998888888999999999999999999999888874  448899999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHH
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR  112 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~  112 (121)
                      .|...+++-|+..|+.+++.|+.|.||+.-|.
T Consensus       110 wgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  110 WGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            99999999999999999999999999988653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.80  E-value=1.8e-18  Score=117.90  Aligned_cols=109  Identities=21%  Similarity=0.156  Sum_probs=89.4

Q ss_pred             CCchHHHHHHHHh--CChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCC--HHHHHHHHHcCCCCCC--CCCccHHHH
Q psy15272          4 CWPKRQLIECIRS--KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGT--QEMVEFLCERGADVNK--GQRSSSLHY   77 (121)
Q Consensus         4 ~~~~~~l~~a~~~--~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~l~~~~~~~~~--~~g~t~l~~   77 (121)
                      ..+.++++.|+..  ++. .+.++|.+.|++++..|..|.||||+|+..++  .++++.|++.|++++.  ..|.||||+
T Consensus       175 ~~G~TpLH~A~~n~~~~~-eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~  253 (764)
T PHA02716        175 KTGYGILHAYLGNMYVDI-DILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMT  253 (764)
T ss_pred             CCCCcHHHHHHHhccCCH-HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            4567788876543  344 56667778899999999999999999999985  4899999999998874  448899986


Q ss_pred             H-------------------------------------HHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHh
Q psy15272         78 A-------------------------------------ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE  113 (121)
Q Consensus        78 a-------------------------------------~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~  113 (121)
                      |                                     +..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus       254 Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa  326 (764)
T PHA02716        254 YIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYIL  326 (764)
T ss_pred             HHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHH
Confidence            5                                     33467889999999999999999999999998764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.78  E-value=5.5e-18  Score=112.24  Aligned_cols=92  Identities=20%  Similarity=0.258  Sum_probs=46.1

Q ss_pred             HHHHHHHhCCCCCccccCCCchHHHHHHHcC---CHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCC---HHHHHHHHH
Q psy15272         21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFG---TQEMVEFLCERGADVNK--GQRSSSLHYAACFGR---PSVAKVLLR   92 (121)
Q Consensus        21 ~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~---~~~~~~L~~   92 (121)
                      .+.++|.+.|++++.+|..|.||||+|+..+   ..+++++|++.|++++.  ..|.||||+|+..++   .+++++|++
T Consensus        90 ~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798         90 DIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             HHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            3344444445555555555555555555443   34555555555555442  234555555555544   555555555


Q ss_pred             cCCCCCccC-cCCCCHHHHHH
Q psy15272         93 HGANPDLRD-EDGKTPLDKAR  112 (121)
Q Consensus        93 ~~~~~~~~~-~~g~tpl~~a~  112 (121)
                      .|++++.++ ..|.||+|.+.
T Consensus       170 ~gadin~~~~~~~~t~Lh~~~  190 (489)
T PHA02798        170 KGVDINTHNNKEKYDTLHCYF  190 (489)
T ss_pred             hCCCcccccCcCCCcHHHHHH
Confidence            555555443 34455555443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.77  E-value=1.3e-17  Score=107.60  Aligned_cols=108  Identities=11%  Similarity=0.003  Sum_probs=91.2

Q ss_pred             CchHHHHHHHH--hCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC-C-------CCCccH
Q psy15272          5 WPKRQLIECIR--SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-K-------GQRSSS   74 (121)
Q Consensus         5 ~~~~~l~~a~~--~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~-~-------~~g~t~   74 (121)
                      ..++++|.++.  .|+. ++.++|..+|++++..  .+.||+|.|+..++.+++++|++.|++.. .       ..+.++
T Consensus       115 ~~~~~L~~~~~n~~n~~-eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~  191 (437)
T PHA02795        115 SVQDLLLYYLSNAYVEI-DIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTR  191 (437)
T ss_pred             cccHHHHHHHHhcCCCH-HHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccch
Confidence            45777888887  6666 5556677889999874  44789999999999999999999997432 1       126789


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         75 LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        75 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      +|.+...++.+++++|++.|++++.+|..|.||||+|+..+
T Consensus       192 l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g  232 (437)
T PHA02795        192 GFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAG  232 (437)
T ss_pred             hHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999999999999999883

>KOG0512|consensus

Probab=99.77  E-value=5.8e-18  Score=95.82  Aligned_cols=111  Identities=24%  Similarity=0.229  Sum_probs=92.4

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--g~t~l~~a~~   80 (121)
                      +..+-+++|.|+++|+.+.|..++ .+|++++.+...|+||||.||..++.+|+..|++.|+++++..  -.||||.|+-
T Consensus        94 D~D~YTpLHRAaYn~h~div~~ll-~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~  172 (228)
T KOG0512|consen   94 DEDEYTPLHRAAYNGHLDIVHELL-LSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAG  172 (228)
T ss_pred             ccccccHHHHHHhcCchHHHHHHH-HccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhc
Confidence            345678899999999997666655 5589999999999999999999999999999999999998644  4699999987


Q ss_pred             hCCHH-HHHHHH-HcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPS-VAKVLL-RHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~-~~~~L~-~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..+.. .+.+|+ ..+.++..++..++||+.+|.+-
T Consensus       173 ~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  173 NRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             ccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            66543 345554 44789999999999999999875

>KOG0195|consensus

Probab=99.77  E-value=2.1e-19  Score=109.07  Aligned_cols=107  Identities=30%  Similarity=0.398  Sum_probs=97.5

Q ss_pred             HHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CccHHHHHHHhCCHHH
Q psy15272          9 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAACFGRPSV   86 (121)
Q Consensus         9 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--g~t~l~~a~~~~~~~~   86 (121)
                      .++..++.|+.-.|...|.....+.|.-|..|.+|||+|+..|+..+++.|+.+|+.++..+  ..||||+|+..|+-++
T Consensus         3 dif~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdi   82 (448)
T KOG0195|consen    3 DIFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDI   82 (448)
T ss_pred             hhhhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHH
Confidence            36777888888888888888888999999999999999999999999999999999887544  4599999999999999


Q ss_pred             HHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         87 AKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        87 ~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      +..|++..++++..|..|+||||+||..+
T Consensus        83 vqkll~~kadvnavnehgntplhyacfwg  111 (448)
T KOG0195|consen   83 VQKLLSRKADVNAVNEHGNTPLHYACFWG  111 (448)
T ss_pred             HHHHHHHhcccchhhccCCCchhhhhhhc
Confidence            99999999999999999999999999874

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.76  E-value=2e-17  Score=109.68  Aligned_cols=108  Identities=19%  Similarity=0.247  Sum_probs=63.5

Q ss_pred             hHHHHHHHHhCC-----hHHHHHHHHhCCCCCccccCCCchHHHHHHHc---CCHHHHHHHHHcCCCC-C--CCCCccHH
Q psy15272          7 KRQLIECIRSKD-----TDALIETIDSGGVEVNFMDDVGQTLLNWASAF---GTQEMVEFLCERGADV-N--KGQRSSSL   75 (121)
Q Consensus         7 ~~~l~~a~~~~~-----~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~-~--~~~g~t~l   75 (121)
                      .+|++.|+.++.     ..++.++|.+.|++++.+|..|.||||.|+..   +..+++++|++.|+++ +  +..|+|||
T Consensus        70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpL  149 (494)
T PHA02989         70 ETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLL  149 (494)
T ss_pred             CCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHH
Confidence            455555554432     23455556666666666666666666655543   4556666666666666 3  23466666


Q ss_pred             HHHHHh--CCHHHHHHHHHcCCCCCc-cCcCCCCHHHHHHhh
Q psy15272         76 HYAACF--GRPSVAKVLLRHGANPDL-RDEDGKTPLDKARER  114 (121)
Q Consensus        76 ~~a~~~--~~~~~~~~L~~~~~~~~~-~~~~g~tpl~~a~~~  114 (121)
                      |+|+..  ++.+++++|++.|++++. .+..|.||++++++.
T Consensus       150 h~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~  191 (494)
T PHA02989        150 HMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRN  191 (494)
T ss_pred             HHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhc
Confidence            665543  456666666666666665 456666666665543

>KOG0510|consensus

Probab=99.76  E-value=9e-18  Score=112.87  Aligned_cols=82  Identities=29%  Similarity=0.420  Sum_probs=51.4

Q ss_pred             CccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC-----------------CCCCccHHHHHHHhCCHHHHHHHHHcCC
Q psy15272         33 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-----------------KGQRSSSLHYAACFGRPSVAKVLLRHGA   95 (121)
Q Consensus        33 ~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~-----------------~~~g~t~l~~a~~~~~~~~~~~L~~~~~   95 (121)
                      ++..+..+.+|||.|+..|+.++++.+++.|....                 +++|+||||+|++.|+.++++.|+..|+
T Consensus       218 in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga  297 (929)
T KOG0510|consen  218 INFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGA  297 (929)
T ss_pred             cccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCC
Confidence            33444444455555555555555554444432211                 3446777777777777777777777777


Q ss_pred             CCCccCcCCCCHHHHHHhh
Q psy15272         96 NPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        96 ~~~~~~~~g~tpl~~a~~~  114 (121)
                      +++.++.++.||||.|+..
T Consensus       298 ~I~~kn~d~~spLH~AA~y  316 (929)
T KOG0510|consen  298 SINSKNKDEESPLHFAAIY  316 (929)
T ss_pred             cccccCCCCCCchHHHHHc
Confidence            7777777777777777776

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.75  E-value=3.7e-17  Score=113.74  Aligned_cols=92  Identities=26%  Similarity=0.287  Sum_probs=78.3

Q ss_pred             HHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCC
Q psy15272         21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPD   98 (121)
Q Consensus        21 ~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~   98 (121)
                      .+..++...+..  ..+..+.++++.|+..|+.++++.|++.|++++.  ..|.||||+|+..|+.+++++|++.|++++
T Consensus       508 ~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin  585 (823)
T PLN03192        508 NVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH  585 (823)
T ss_pred             cHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC
Confidence            444555554432  2344567899999999999999999999998874  458999999999999999999999999999


Q ss_pred             ccCcCCCCHHHHHHhh
Q psy15272         99 LRDEDGKTPLDKARER  114 (121)
Q Consensus        99 ~~~~~g~tpl~~a~~~  114 (121)
                      .+|.+|.||||.|+..
T Consensus       586 ~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        586 IRDANGNTALWNAISA  601 (823)
T ss_pred             CcCCCCCCHHHHHHHh
Confidence            9999999999999887

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=1.4e-17  Score=86.94  Aligned_cols=70  Identities=40%  Similarity=0.607  Sum_probs=65.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         44 LNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        44 l~~a~~~~~~~~~~~l~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      ||+|+..++.+++++|++.+.+++.  |.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcC
Confidence            6899999999999999999887766  889999999999999999999999999999999999999999983

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02792 ankyrin-like protein; Provisional

Probab=99.74  E-value=1.1e-16  Score=106.97  Aligned_cols=107  Identities=19%  Similarity=0.118  Sum_probs=90.2

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCC--chHHHHHHHcCCH---HHHHHHHHcCCCCCCC--CCccHHHHH
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVG--QTLLNWASAFGTQ---EMVEFLCERGADVNKG--QRSSSLHYA   78 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~--~~~l~~a~~~~~~---~~~~~l~~~~~~~~~~--~g~t~l~~a   78 (121)
                      ....++.|+..++.+ +.++|.++|++++..|..|  .+|||.|+.....   ++++.|++.|++++.+  .|.||||+|
T Consensus       339 ~~n~~~~Aa~~gn~e-IVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~A  417 (631)
T PHA02792        339 HINKYFQKFDNRDPK-VVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYC  417 (631)
T ss_pred             cchHHHHHHHcCCHH-HHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHH
Confidence            345578888889884 5566777899999888764  6999987776554   4578889999988844  499999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHh
Q psy15272         79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE  113 (121)
Q Consensus        79 ~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~  113 (121)
                      +..++.+++++|++.|++++.++..|.||+++|..
T Consensus       418 a~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        418 IESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999865

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.73  E-value=7.2e-16  Score=84.58  Aligned_cols=111  Identities=35%  Similarity=0.477  Sum_probs=97.0

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..++.+.+.. +...+.+.+..+..|.+|+|.|+..+..++++.|++.+..++  ...+.||+|+|+.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~-li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKL-LLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHH-HHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            4567899999999999855555 556677778888999999999999999999999999996554  4458899999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .++.+++++|+..+.+++..+..+.||++.|...
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~  116 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN  116 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            9999999999999999999999999999999876

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.73  E-value=3.8e-17  Score=93.39  Aligned_cols=96  Identities=17%  Similarity=0.177  Sum_probs=82.0

Q ss_pred             CCCchHHHHHHHHhCChH--HHHHHHHhCCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHH-cCCCCC--CCCCccHHH
Q psy15272          3 TCWPKRQLIECIRSKDTD--ALIETIDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCE-RGADVN--KGQRSSSLH   76 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~--~v~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~--~~~g~t~l~   76 (121)
                      +..+.++++.|+..+..+  ++.++|.+.|.+++.++ ..|.||||+|+..++.+++++|+. .|++++  +..|.||||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~  131 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYY  131 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHH
Confidence            345678889999888764  35677788899999888 589999999999999999999997 488776  445899999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCC
Q psy15272         77 YAACFGRPSVAKVLLRHGANPD   98 (121)
Q Consensus        77 ~a~~~~~~~~~~~L~~~~~~~~   98 (121)
                      +|+..++.+++++|+..|++.+
T Consensus       132 ~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        132 VACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999998765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.71  E-value=2.6e-16  Score=105.99  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=84.5

Q ss_pred             CCchHHHHHHHHhCCh---HHHHHHHHhCCC--CCccccCCCchHHHH---HHHcC---------CHHHHHHHHHcCCCC
Q psy15272          4 CWPKRQLIECIRSKDT---DALIETIDSGGV--EVNFMDDVGQTLLNW---ASAFG---------TQEMVEFLCERGADV   66 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~---~~v~~ll~~~~~--~~~~~~~~~~~~l~~---a~~~~---------~~~~~~~l~~~~~~~   66 (121)
                      ..+.+|++.|+..++.   .++.++|.++|+  +++..|..|.||||.   +...+         ..+++++|+..|+++
T Consensus       376 ~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADI  455 (672)
T PHA02730        376 TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDI  455 (672)
T ss_pred             CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccch
Confidence            3567888888877751   355666667776  578888889999984   32222         235689999999888


Q ss_pred             CCC--CCccHHHHHHHhCCHHHHHHHHHcCCCCCccCc-CCCCHHHHHHh
Q psy15272         67 NKG--QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDE-DGKTPLDKARE  113 (121)
Q Consensus        67 ~~~--~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~-~g~tpl~~a~~  113 (121)
                      +.+  .|.||||+|+..++.+++++|++.|++++.++. .|.||++.|+.
T Consensus       456 NakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        456 DMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             hccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHH
Confidence            744  488999999999999999999999999999996 58999998875

>PHA02917 ankyrin-like protein; Provisional

Probab=99.71  E-value=4.7e-16  Score=105.80  Aligned_cols=109  Identities=12%  Similarity=0.050  Sum_probs=86.2

Q ss_pred             CCCchHHHHHHHHh---CChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCccHH
Q psy15272          3 TCWPKRQLIECIRS---KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQE----MVEFLCERGADVNKGQRSSSL   75 (121)
Q Consensus         3 ~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~----~~~~l~~~~~~~~~~~g~t~l   75 (121)
                      +..+.+++|.|+..   |+.+.+ ++|++.|++++..+..|.||||.|+..++.+    +++.|+..+...+..+..+++
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v-~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~  107 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVV-KLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFS  107 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHH-HHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHH
Confidence            45678899987555   667555 5555779999999999999999999998844    567777654323333344677


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHH
Q psy15272         76 HYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR  112 (121)
Q Consensus        76 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~  112 (121)
                      ++|+..++.+++++|++.|++++.+|..|.|||++++
T Consensus       108 ~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~  144 (661)
T PHA02917        108 YMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYV  144 (661)
T ss_pred             HHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHH
Confidence            8899999999999999999999999999999999654

>KOG1710|consensus

Probab=99.70  E-value=4.1e-16  Score=94.68  Aligned_cols=109  Identities=35%  Similarity=0.418  Sum_probs=100.4

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC---CccHHHHHHHh
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ---RSSSLHYAACF   81 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~---g~t~l~~a~~~   81 (121)
                      .+.+++++++.+++.+....||.. -.++++.|..|+++|..|+..|+.++++.|++.|++++...   +.||||.|+..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            568899999999999999888866 44689999999999999999999999999999999998543   57999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+.+++++|++.|+.....|.-|.|+-..|+..
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFV  122 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFV  122 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHh
Confidence            999999999999999999999999999999887

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.69  E-value=5.4e-16  Score=105.77  Aligned_cols=103  Identities=31%  Similarity=0.325  Sum_probs=90.5

Q ss_pred             HHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHH
Q psy15272          9 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSV   86 (121)
Q Consensus         9 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~   86 (121)
                      .++.|+..|+.+.+. +|...|.+++..|..|.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..++.++
T Consensus        85 ~L~~aa~~G~~~~vk-~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGAR-ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHH-HHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            478899999997665 45567899999999999999999999999999999999998874  458999999999999999


Q ss_pred             HHHHHHc-------CCCCCccCcCCCCHHHHHH
Q psy15272         87 AKVLLRH-------GANPDLRDEDGKTPLDKAR  112 (121)
Q Consensus        87 ~~~L~~~-------~~~~~~~~~~g~tpl~~a~  112 (121)
                      +++|+.+       |++.+..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999998       8888888888888776543

>KOG0502|consensus

Probab=99.69  E-value=5.3e-17  Score=95.15  Aligned_cols=107  Identities=30%  Similarity=0.358  Sum_probs=91.5

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~   82 (121)
                      .+..++..++.+.++..+..+.   ..-+|..|..|.|||.+|+..|+.+++++|+..|+++.  .+...++|++|++.|
T Consensus       128 ~p~s~~slsVhql~L~~~~~~~---~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~gg  204 (296)
T KOG0502|consen  128 MPWSPLSLSVHQLHLDVVDLLV---NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGG  204 (296)
T ss_pred             ccCChhhHHHHHHHHHHHHHHh---hccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCC
Confidence            3456677788887664443322   34578899999999999999999999999999999987  344669999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..+++++|+.+++++|.-|-+|.|||-+|++-
T Consensus       205 ytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrg  236 (296)
T KOG0502|consen  205 YTDIVELLLTREVDVNVYDWNGGTPLLYAVRG  236 (296)
T ss_pred             hHHHHHHHHhcCCCcceeccCCCceeeeeecC
Confidence            99999999999999999999999999998876

>KOG4177|consensus

Probab=99.69  E-value=2.5e-16  Score=110.28  Aligned_cols=111  Identities=30%  Similarity=0.337  Sum_probs=97.9

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..|+. .++++|+++|++++.+++.|+||||.|+..|+.+|++.|+++|+.++.  .+|.|||++|++
T Consensus       537 ~~r~~TpLh~A~~~g~v-~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~  615 (1143)
T KOG4177|consen  537 TGRGYTPLHVAVHYGNV-DLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVR  615 (1143)
T ss_pred             cccccchHHHHHhcCCc-hHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHH
Confidence            34566899999999999 555667777999999999999999999999999999999999999884  458999999999


Q ss_pred             hCCHHHHHHHHHcCCC-----CCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGAN-----PDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~-----~~~~~~~g~tpl~~a~~~  114 (121)
                      .|+.+++++|+..+..     ....+..|.+|...+...
T Consensus       616 lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  616 LGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             hcccchhhHHHhccCccccccchhhhhcccChhhHHHHh
Confidence            9999999999999988     777888999998876554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.69  E-value=3.6e-16  Score=108.03  Aligned_cols=77  Identities=34%  Similarity=0.384  Sum_probs=70.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC----------------CCccHHHHHHHhCCHHHHHHHHHcCCCCCccC
Q psy15272         38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKG----------------QRSSSLHYAACFGRPSVAKVLLRHGANPDLRD  101 (121)
Q Consensus        38 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~----------------~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~  101 (121)
                      ..|.||||+|+..++.++++.|++.|++++.+                .|.+|||.|+..++.+++++|++.|++++.+|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            45899999999999999999999999987632                37799999999999999999999999999999


Q ss_pred             cCCCCHHHHHHhh
Q psy15272        102 EDGKTPLDKARER  114 (121)
Q Consensus       102 ~~g~tpl~~a~~~  114 (121)
                      ..|+||+|+|+..
T Consensus       206 ~~g~T~Lh~A~~~  218 (743)
T TIGR00870       206 SLGNTLLHLLVME  218 (743)
T ss_pred             hhhhHHHHHHHhh
Confidence            9999999999876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505|consensus

Probab=99.69  E-value=1.4e-16  Score=102.86  Aligned_cols=110  Identities=29%  Similarity=0.384  Sum_probs=94.2

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCC------------------
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV------------------   66 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~------------------   66 (121)
                      .+.+.+++++...+.+.|.. +..+|.+++..|..++||+|.|+.-|+..++++|+..|++.                  
T Consensus        72 DglTalhq~~id~~~e~v~~-l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea  150 (527)
T KOG0505|consen   72 DGLTALHQACIDDNLEMVKF-LVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEA  150 (527)
T ss_pred             ccchhHHHHHhcccHHHHHH-HHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcc
Confidence            45677899999998866654 55679999999999999999999999999999999875430                  


Q ss_pred             -----------------------------------------C--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcC
Q psy15272         67 -----------------------------------------N--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDED  103 (121)
Q Consensus        67 -----------------------------------------~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~  103 (121)
                                                               .  ...|.|.+|.|+..|..++..+|++.|.+++.+|.+
T Consensus       151 ~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~d  230 (527)
T KOG0505|consen  151 TLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYD  230 (527)
T ss_pred             hhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccccc
Confidence                                                     0  111578999999999999999999999999999999


Q ss_pred             CCCHHHHHHhhc
Q psy15272        104 GKTPLDKARERV  115 (121)
Q Consensus       104 g~tpl~~a~~~~  115 (121)
                      |+||||.|+..+
T Consensus       231 gWtPlHAAA~Wg  242 (527)
T KOG0505|consen  231 GWTPLHAAAHWG  242 (527)
T ss_pred             CCCcccHHHHhh
Confidence            999999998884

>PHA02741 hypothetical protein; Provisional

Probab=99.68  E-value=1.4e-15  Score=88.12  Aligned_cols=95  Identities=17%  Similarity=0.223  Sum_probs=81.1

Q ss_pred             CCCchHHHHHHHHhCCh---HHHHHHHHhCCCCCccccC-CCchHHHHHHHcCCHHHHHHHHH-cCCCCC--CCCCccHH
Q psy15272          3 TCWPKRQLIECIRSKDT---DALIETIDSGGVEVNFMDD-VGQTLLNWASAFGTQEMVEFLCE-RGADVN--KGQRSSSL   75 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~---~~v~~ll~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~--~~~g~t~l   75 (121)
                      +..+.++|+.|+..++.   ..+.++|...|.+++.++. .|.||||+|+..++.+++++|+. .|++++  +..|.|||
T Consensus        57 d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL  136 (169)
T PHA02741         57 DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPF  136 (169)
T ss_pred             CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHH
Confidence            45678899999999985   3566777788999998885 89999999999999999999997 587776  45699999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCC
Q psy15272         76 HYAACFGRPSVAKVLLRHGANP   97 (121)
Q Consensus        76 ~~a~~~~~~~~~~~L~~~~~~~   97 (121)
                      |+|+..++.+++++|++.++..
T Consensus       137 ~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        137 ELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999886543

>KOG0507|consensus

Probab=99.67  E-value=2e-16  Score=105.80  Aligned_cols=114  Identities=22%  Similarity=0.195  Sum_probs=99.8

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+-+.+++|+.+|+. .+..+|+.+..-++..|..|.+|+|+|++.|+.++++.++..+..++.  -.|.||||.|++
T Consensus        46 d~~gfTalhha~Lng~~-~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaq  124 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQN-QISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQ  124 (854)
T ss_pred             CccchhHHHHHHhcCch-HHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhh
Confidence            45677889999999998 555666677788888899999999999999999999999988755553  348999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhccc
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE  117 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~~~  117 (121)
                      .|+.+++.+|+.+|+++.++|+.+.|++..|++.+..
T Consensus       125 hgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen  125 HGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRA  161 (854)
T ss_pred             hcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhh
Confidence            9999999999999999999999999999999998543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.67  E-value=1.4e-15  Score=102.50  Aligned_cols=111  Identities=15%  Similarity=0.054  Sum_probs=89.1

Q ss_pred             CCchHHHHHHHHhCC--hHHHHHHHHhCCCCCccccCCCchHHHHHHHcC--CHHHHHHHHHcCCCC--CCCC--CccHH
Q psy15272          4 CWPKRQLIECIRSKD--TDALIETIDSGGVEVNFMDDVGQTLLNWASAFG--TQEMVEFLCERGADV--NKGQ--RSSSL   75 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~--~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~--~~~~--g~t~l   75 (121)
                      ..+.++||.|+..+.  ..++.++|.+.|++++.+|..|+||||+|+..+  +.++++.|++.|++.  +..+  +.+|+
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l  118 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDL  118 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchH
Confidence            457889999998874  346667777889999999999999999998866  789999999997654  4333  77898


Q ss_pred             HHHHH--hCCHHHHHHHHH-cCCCCCccCc-----CCCCHHHHHHhh
Q psy15272         76 HYAAC--FGRPSVAKVLLR-HGANPDLRDE-----DGKTPLDKARER  114 (121)
Q Consensus        76 ~~a~~--~~~~~~~~~L~~-~~~~~~~~~~-----~g~tpl~~a~~~  114 (121)
                      +.++.  .++.+++++|+. .+++++....     .|.+|++++...
T Consensus       119 ~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~  165 (672)
T PHA02730        119 YSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPN  165 (672)
T ss_pred             HHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCC
Confidence            88777  788899999996 5678765532     788999988776

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.66  E-value=1.9e-16  Score=75.70  Aligned_cols=52  Identities=46%  Similarity=0.816  Sum_probs=28.4

Q ss_pred             HHcC-CCCC--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHH
Q psy15272         60 CERG-ADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA  111 (121)
Q Consensus        60 ~~~~-~~~~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a  111 (121)
                      ++.| .+++  +..|.||||+|+..|+.+++++|++.|++++.+|..|.||+++|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            4445 4444  45588888888888888888888888888899999999998876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.66  E-value=1.2e-15  Score=94.90  Aligned_cols=80  Identities=23%  Similarity=0.288  Sum_probs=69.3

Q ss_pred             cccCCCch-HHHHHHHcCCHHHHHHHHHcCCCCCCC------CCccHHHHHHHhCCHHHHHHHHHcCCCCCcc-CcCCCC
Q psy15272         35 FMDDVGQT-LLNWASAFGTQEMVEFLCERGADVNKG------QRSSSLHYAACFGRPSVAKVLLRHGANPDLR-DEDGKT  106 (121)
Q Consensus        35 ~~~~~~~~-~l~~a~~~~~~~~~~~l~~~~~~~~~~------~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~-~~~g~t  106 (121)
                      .+|..+.+ +++.|+..+..++++.|++.|++++..      .|.||||+|+..++.+++++|++.|++++.+ +..|.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            45666665 566777779999999999999998753      5899999999999999999999999999986 468999


Q ss_pred             HHHHHHhh
Q psy15272        107 PLDKARER  114 (121)
Q Consensus       107 pl~~a~~~  114 (121)
                      |||.|+..
T Consensus       107 pLh~Aa~~  114 (300)
T PHA02884        107 PLYISVLH  114 (300)
T ss_pred             HHHHHHHc
Confidence            99999887

>PHA02792 ankyrin-like protein; Provisional

Probab=99.66  E-value=9.7e-16  Score=102.50  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=88.8

Q ss_pred             HHHHH-HHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHH-cCCHHHHHHHHHcCCCCC------------------
Q psy15272          8 RQLIE-CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA-FGTQEMVEFLCERGADVN------------------   67 (121)
Q Consensus         8 ~~l~~-a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~-~~~~~~~~~l~~~~~~~~------------------   67 (121)
                      ++++. |..+++. ++.++|..+|++++.++..+.+|+++|+. .++.+++++|++.|+++.                  
T Consensus        73 ~~~~~~~s~n~~l-Elvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~  151 (631)
T PHA02792         73 DIFEYLCSDNIDI-ELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAE  151 (631)
T ss_pred             cHHHHHHHhcccH-HHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccccc
Confidence            45544 4455666 55566667799999999889999999966 699999999999997621                  


Q ss_pred             --------------------CCCCccHHHHHHHhC-------CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         68 --------------------KGQRSSSLHYAACFG-------RPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        68 --------------------~~~g~t~l~~a~~~~-------~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                                          ++.|.||||+++..+       +.+++++|+.+|++++.+|..|.||||+|+.+.
T Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        152 YYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             ccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcc
Confidence                                123789999999998       799999999999999999999999999998874

>KOG0514|consensus

Probab=99.66  E-value=9.7e-16  Score=95.49  Aligned_cols=108  Identities=31%  Similarity=0.342  Sum_probs=86.8

Q ss_pred             CchHHHHHHHH----h-CChHHHHHHHHhCCCCCccc-cCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHH
Q psy15272          5 WPKRQLIECIR----S-KDTDALIETIDSGGVEVNFM-DDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLH   76 (121)
Q Consensus         5 ~~~~~l~~a~~----~-~~~~~v~~ll~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~   76 (121)
                      .+-++++-++.    . .+.+.|.+|+ +.| ++|.+ ...|.|+|++|+.+|..++++.|+.+|++++  +.+|.|+|+
T Consensus       301 AGYtpiMLaALA~lk~~~d~~vV~~LF-~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALM  378 (452)
T KOG0514|consen  301 AGYTPVMLAALAKLKQPADRTVVERLF-KMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALM  378 (452)
T ss_pred             ccccHHHHHHHHhhcchhhHHHHHHHH-hcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHh
Confidence            34455554432    1 3444455544 444 67755 4558999999999999999999999999887  556999999


Q ss_pred             HHHHhCCHHHHHHHHHc-CCCCCccCcCCCCHHHHHHhh
Q psy15272         77 YAACFGRPSVAKVLLRH-GANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        77 ~a~~~~~~~~~~~L~~~-~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +|++.|+++++++|+.. ++++...|.+|.|+|.+|.+.
T Consensus       379 CA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  379 CAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            99999999999999988 799999999999999999887

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.65  E-value=9.8e-16  Score=105.91  Aligned_cols=111  Identities=19%  Similarity=0.160  Sum_probs=88.6

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCcccc--------------CCCchHHHHHHHcCCHHHHHHHHHcCCCCCC-
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMD--------------DVGQTLLNWASAFGTQEMVEFLCERGADVNK-   68 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~-   68 (121)
                      ..+.+|+|.|+..++.+.| ++|.+.|++++..+              ..|.+|+|.|+..++.++++.|++.|++++. 
T Consensus       126 ~~G~TpLhlAa~~~~~eiV-klLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~  204 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIV-KLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA  204 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHH-HHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence            3578999999999999655 55556788887542              3588999999999999999999999988774 


Q ss_pred             -CCCccHHHHHHHhC---------CHHHHHHHHHcCCCC-------CccCcCCCCHHHHHHhhc
Q psy15272         69 -GQRSSSLHYAACFG---------RPSVAKVLLRHGANP-------DLRDEDGKTPLDKARERV  115 (121)
Q Consensus        69 -~~g~t~l~~a~~~~---------~~~~~~~L~~~~~~~-------~~~~~~g~tpl~~a~~~~  115 (121)
                       ..|+||||+|+..+         ...+.++++..+++.       +.+|.+|.||+++|+..+
T Consensus       205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g  268 (743)
T TIGR00870       205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG  268 (743)
T ss_pred             hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC
Confidence             44899999999876         234566666665554       678999999999999883

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.64  E-value=7.8e-15  Score=87.86  Aligned_cols=108  Identities=31%  Similarity=0.428  Sum_probs=95.5

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCC-----HHHHHHHHHcCC---CCC--CCCCccHH
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGT-----QEMVEFLCERGA---DVN--KGQRSSSL   75 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~l~~~~~---~~~--~~~g~t~l   75 (121)
                      ...+++.++..+....+ .++...+.+++..+..|.||+|+|+..++     .++++.|+..|.   ...  +..|.|||
T Consensus        73 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl  151 (235)
T COG0666          73 GRLPLHSAASKGDDKIV-KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL  151 (235)
T ss_pred             ccCHHHHHHHcCcHHHH-HHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence            45677888888888666 55667789999999999999999999999     999999999999   333  34599999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         76 HYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        76 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+|+..|+.+++++|++.|++++.++..|.|++++|+..
T Consensus       152 ~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~  190 (235)
T COG0666         152 HWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN  190 (235)
T ss_pred             HHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhccc
Confidence            999999999999999999999999999999999999887

>KOG0515|consensus

Probab=99.62  E-value=4.4e-15  Score=96.48  Aligned_cols=103  Identities=28%  Similarity=0.304  Sum_probs=88.1

Q ss_pred             HHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCCHHH
Q psy15272          9 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSV   86 (121)
Q Consensus         9 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~~~~   86 (121)
                      .|++|+..|.++.|.+.+-+ -.|+...+..|.|+||-|+-.|+.+++++|+..|++++  +.+||||||+|+.+++..+
T Consensus       553 LLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            47889999999888777655 45888889999999999999999999999999999998  4569999999999999999


Q ss_pred             HHHHHHcCCCCCccC-cCCCCHHHHHH
Q psy15272         87 AKVLLRHGANPDLRD-EDGKTPLDKAR  112 (121)
Q Consensus        87 ~~~L~~~~~~~~~~~-~~g~tpl~~a~  112 (121)
                      ++.|++.|+-+-+.. .++.|+..-+.
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcc
Confidence            999999998875544 46667765443

>KOG0505|consensus

Probab=99.61  E-value=1.6e-15  Score=98.13  Aligned_cols=105  Identities=31%  Similarity=0.431  Sum_probs=95.1

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCccHHHHHHHhCCHH
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS   85 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~--~g~t~l~~a~~~~~~~   85 (121)
                      -.++.|++.++++++..+|.. +..++..+.+|.|++|.++.-.+.+|+.+|++.|.+++..  .++||+|.|+.+|+..
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~-ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR-GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc-CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            347889999999999887765 6788989999999999999999999999999999999854  4999999999999999


Q ss_pred             HHHHHHHcCCCCCccCcCCCCHHHHHHh
Q psy15272         86 VAKVLLRHGANPDLRDEDGKTPLDKARE  113 (121)
Q Consensus        86 ~~~~L~~~~~~~~~~~~~g~tpl~~a~~  113 (121)
                      ++++|+..|+++...|.+|+.|+.++..
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~  148 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAED  148 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccC
Confidence            9999999999999999999999887643

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.59  E-value=8.7e-15  Score=69.47  Aligned_cols=52  Identities=44%  Similarity=0.709  Sum_probs=25.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCCHHHHHHHH
Q psy15272         40 GQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLL   91 (121)
Q Consensus        40 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~L~   91 (121)
                      |+||+|+|+..|+.+++++|++.|.+++  +.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            3455555555555555555555555544  223555555555555555555553

...

>KOG3676|consensus

Probab=99.57  E-value=1.4e-14  Score=97.65  Aligned_cols=114  Identities=25%  Similarity=0.326  Sum_probs=94.5

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCcc--------cc---------------CCCchHHHHHHHcCCHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNF--------MD---------------DVGQTLLNWASAFGTQEMVEFL   59 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~--------~~---------------~~~~~~l~~a~~~~~~~~~~~l   59 (121)
                      .+.+++++|.|+.+.+.+-|.. |...|+|++.        .+               ..|+.||.+|+-.++.++++.|
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~l-Ll~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRL-LLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHH-HHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            3678899999999999966654 5566777752        11               1267899999999999999999


Q ss_pred             HHcCCCCCCCC--CccHHHHHHHhCCHHHHHHHHHcCCC--CCccCcCCCCHHHHHHhhccc
Q psy15272         60 CERGADVNKGQ--RSSSLHYAACFGRPSVAKVLLRHGAN--PDLRDEDGKTPLDKARERVDE  117 (121)
Q Consensus        60 ~~~~~~~~~~~--g~t~l~~a~~~~~~~~~~~L~~~~~~--~~~~~~~g~tpl~~a~~~~~~  117 (121)
                      +.+|++++.+|  |+|.||..+.....+..+++++.|++  ...+|.+|-|||.+|+..+..
T Consensus       260 l~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~  321 (782)
T KOG3676|consen  260 LAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKK  321 (782)
T ss_pred             HhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhH
Confidence            99999998555  99999999988888889999999999  899999999999999988543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=1.2e-14  Score=69.44  Aligned_cols=53  Identities=40%  Similarity=0.725  Sum_probs=32.3

Q ss_pred             HHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHH
Q psy15272         26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYA   78 (121)
Q Consensus        26 l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a   78 (121)
                      |.....+++..|..|.||||+|+..|+.+++++|++.|++++  +..|.||+|+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            333347899999999999999999999999999999999887  45599999986

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.54  E-value=1.1e-14  Score=69.08  Aligned_cols=44  Identities=43%  Similarity=0.690  Sum_probs=37.8

Q ss_pred             CccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         71 RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        71 g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+||||+|+..|+.+++++|++.|++++.+|..|.||+|+|+..
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~   44 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKN   44 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHT
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            68999999999999999999999999999999999999999998

...

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.50  E-value=5.1e-13  Score=73.15  Aligned_cols=80  Identities=41%  Similarity=0.581  Sum_probs=72.3

Q ss_pred             ccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHh
Q psy15272         36 MDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE  113 (121)
Q Consensus        36 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~  113 (121)
                      .+..|.||+|+|+..++.+++++|++.+....  +..|.+|+|.|+..+..+++++|++.++.++..+..+.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45779999999999999999999999998743  4568899999999999999999999999999999999999999988


Q ss_pred             hc
Q psy15272        114 RV  115 (121)
Q Consensus       114 ~~  115 (121)
                      .+
T Consensus        83 ~~   84 (126)
T cd00204          83 NG   84 (126)
T ss_pred             cC
Confidence            73

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507|consensus

Probab=99.49  E-value=6e-14  Score=94.27  Aligned_cols=112  Identities=28%  Similarity=0.337  Sum_probs=97.2

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCC------------CCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCc
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGG------------VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRS   72 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~   72 (121)
                      .+-+.+|++.++++.+..+|...+            -+.+..|..|.|.||.|+.+|+..+.+.|++..+-..  +..|.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~   83 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGI   83 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCc
Confidence            355789999999999998886532            3456788899999999999999999999998776443  55588


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhcccccCC
Q psy15272         73 SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE  121 (121)
Q Consensus        73 t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~  121 (121)
                      +|||+|++.|+.++++.++..+..++..+..|.||||.++++   ||++
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh---gh~d  129 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH---GHLE  129 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh---cchH
Confidence            999999999999999999999988999999999999999999   7764

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.48  E-value=2.7e-13  Score=92.81  Aligned_cols=73  Identities=40%  Similarity=0.470  Sum_probs=67.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         43 LLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        43 ~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      .|+.|+..|+.+.++.|+..|++++.  ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            57889999999999999999998874  45899999999999999999999999999999999999999999873

>KOG3676|consensus

Probab=99.48  E-value=5.6e-13  Score=90.18  Aligned_cols=111  Identities=25%  Similarity=0.336  Sum_probs=87.6

Q ss_pred             CCchHHHHHHHH---hCChHHHHHHHHhCCCCCc---c-ccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--------
Q psy15272          4 CWPKRQLIECIR---SKDTDALIETIDSGGVEVN---F-MDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--------   68 (121)
Q Consensus         4 ~~~~~~l~~a~~---~~~~~~v~~ll~~~~~~~~---~-~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--------   68 (121)
                      ..+.+.+|.|..   .+..+.+..||.-.+.-+|   . -...|.|+||.|+.+.+.++++.|+..|+++++        
T Consensus       141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~  220 (782)
T KOG3676|consen  141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFC  220 (782)
T ss_pred             chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccC
Confidence            356677777765   3444566666665554343   1 124599999999999999999999999988651        


Q ss_pred             ---C--------------CCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         69 ---G--------------QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        69 ---~--------------~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                         .              .|..||.+|++.++.+++++|+++|+|++.+|..|+|.||..+-+
T Consensus       221 ~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~  283 (782)
T KOG3676|consen  221 PDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIH  283 (782)
T ss_pred             cccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHH
Confidence               1              145799999999999999999999999999999999999987655

>KOG4214|consensus

Probab=99.47  E-value=2.6e-13  Score=69.56  Aligned_cols=73  Identities=32%  Similarity=0.413  Sum_probs=65.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         42 TLLNWASAFGTQEMVEFLCERGADVNKG-QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        42 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..+.++..+|..+-++..+..|.+++.. .|++|||+|+.+|..+++++|+..|++++.+|+.|-|||..|+..
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHH
Confidence            3567888999999999888888887743 488999999999999999999999999999999999999999887

>KOG0783|consensus

Probab=99.41  E-value=3.6e-13  Score=91.81  Aligned_cols=99  Identities=23%  Similarity=0.362  Sum_probs=85.7

Q ss_pred             HhCChHHHHHHHHhCCCC-CccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCccHHHHHHHhCCHHHHHHH
Q psy15272         15 RSKDTDALIETIDSGGVE-VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYAACFGRPSVAKVL   90 (121)
Q Consensus        15 ~~~~~~~v~~ll~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~---~~g~t~l~~a~~~~~~~~~~~L   90 (121)
                      -++....++-++.+...+ .++.|..|++++|+++..+...+++||++.|+++.-   ..|+||||-|...|+++|+-.|
T Consensus        26 tKs~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lL  105 (1267)
T KOG0783|consen   26 TKSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLL  105 (1267)
T ss_pred             hcCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHH
Confidence            333443677777765554 578899999999999999999999999999998763   3499999999999999999999


Q ss_pred             HHcCCCCCccCcCCCCHHHHHHh
Q psy15272         91 LRHGANPDLRDEDGKTPLDKARE  113 (121)
Q Consensus        91 ~~~~~~~~~~~~~g~tpl~~a~~  113 (121)
                      +.+|+.+.++|++|..||+..++
T Consensus       106 L~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  106 LSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HhcCCceEEecccCCCHHHHHhh
Confidence            99999999999999999998776

>KOG0515|consensus

Probab=99.32  E-value=6.4e-12  Score=82.16  Aligned_cols=69  Identities=30%  Similarity=0.397  Sum_probs=60.9

Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         46 WASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        46 ~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      -|+..|.+++++..+..--++..  ..|.|+||-|++.||.++|++|++.|+++|..|.+|+||||+|++-
T Consensus       556 DaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASC  626 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhc
Confidence            37778999999988876666653  3489999999999999999999999999999999999999999874

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.26  E-value=3.7e-10  Score=67.57  Aligned_cols=82  Identities=41%  Similarity=0.500  Sum_probs=72.4

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCC-----HHHHHHHHHcCC---CCCccCcC
Q psy15272         34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGR-----PSVAKVLLRHGA---NPDLRDED  103 (121)
Q Consensus        34 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~-----~~~~~~L~~~~~---~~~~~~~~  103 (121)
                      ...+..+.++++.++..+...++.+++..+.+++  +..|.|++|+|+..++     .++++.|++.|+   ..+.+|..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3455668899999999999999999999998876  4459999999999999     999999999999   66777999


Q ss_pred             CCCHHHHHHhhc
Q psy15272        104 GKTPLDKARERV  115 (121)
Q Consensus       104 g~tpl~~a~~~~  115 (121)
                      |.||+|+|+..+
T Consensus       147 g~tpl~~A~~~~  158 (235)
T COG0666         147 GNTPLHWAALNG  158 (235)
T ss_pred             CCchhHHHHHcC
Confidence            999999999883

>KOG1710|consensus

Probab=99.24  E-value=1.1e-10  Score=71.49  Aligned_cols=87  Identities=18%  Similarity=0.158  Sum_probs=72.7

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCc-cccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVN-FMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      ..+-..+.+|+++|+.+.| ++++..|+|+| .++..++||||+|+..|+.++.+.|+..|+.+..  .-|+|+-.+|+.
T Consensus        43 ~sGMs~LahAaykGnl~~v-~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAF  121 (396)
T KOG1710|consen   43 PSGMSVLAHAAYKGNLTLV-ELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAF  121 (396)
T ss_pred             CCcccHHHHHHhcCcHHHH-HHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHH
Confidence            3455678899999999555 66677799998 4578899999999999999999999999998763  448999999999


Q ss_pred             hCCHHHHHHHH
Q psy15272         81 FGRPSVAKVLL   91 (121)
Q Consensus        81 ~~~~~~~~~L~   91 (121)
                      -|+-+|+..+-
T Consensus       122 VG~H~CV~iIN  132 (396)
T KOG1710|consen  122 VGHHECVAIIN  132 (396)
T ss_pred             hcchHHHHHHh
Confidence            99988877654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.23  E-value=3.3e-11  Score=51.24  Aligned_cols=33  Identities=45%  Similarity=0.806  Sum_probs=28.2

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHHcCCCCCccCc
Q psy15272         70 QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDE  102 (121)
Q Consensus        70 ~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~  102 (121)
                      +|+||||+|+..++.+++++|++.|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478899999999999999999999998888763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=99.18  E-value=6e-11  Score=49.20  Aligned_cols=28  Identities=39%  Similarity=0.589  Sum_probs=21.1

Q ss_pred             CccHHHHHHHhCCHHHHHHHHHcCCCCC
Q psy15272         71 RSSSLHYAACFGRPSVAKVLLRHGANPD   98 (121)
Q Consensus        71 g~t~l~~a~~~~~~~~~~~L~~~~~~~~   98 (121)
                      |+||||+|+..|+.+++++|++.|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            6777777777777777777777777765

>KOG0506|consensus

Probab=99.17  E-value=8.7e-11  Score=76.02  Aligned_cols=88  Identities=24%  Similarity=0.220  Sum_probs=77.1

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHc-CC--CCCCCCCccHHHHHHHhCC
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GA--DVNKGQRSSSLHYAACFGR   83 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~--~~~~~~g~t~l~~a~~~~~   83 (121)
                      ...++.|++.|++..++++..+ +.+++.+|.+.+|+||.|+..|+.+++++|+.. +.  ++.+++|+|||.-|..+++
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h  585 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH  585 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc
Confidence            3458999999999999998887 789999999999999999999999999999864 34  4447789999999999999


Q ss_pred             HHHHHHHHHcCC
Q psy15272         84 PSVAKVLLRHGA   95 (121)
Q Consensus        84 ~~~~~~L~~~~~   95 (121)
                      .+++++|-+...
T Consensus       586 ~~v~k~L~~~~~  597 (622)
T KOG0506|consen  586 KEVVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHHHhc
Confidence            999999977644

>KOG0782|consensus

Probab=99.16  E-value=3.8e-10  Score=74.90  Aligned_cols=107  Identities=28%  Similarity=0.434  Sum_probs=91.7

Q ss_pred             HHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCccHHHHHHHhCCH
Q psy15272          9 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA----DVNKGQRSSSLHYAACFGRP   84 (121)
Q Consensus         9 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~----~~~~~~g~t~l~~a~~~~~~   84 (121)
                      .++.|+..+++-.+.+.-. .|.++..++.+..+.||+|+..|+.+++++++..|+    ++.+..|.|+||.|+..++-
T Consensus       869 eil~av~~~D~~klqE~h~-~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHL-NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHh-cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            4788999998766666444 466777889999999999999999999999999986    34456699999999999999


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHHhhcc
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVD  116 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~~  116 (121)
                      .++.+|++.|+.+...|..|.||-..|.+.++
T Consensus       948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d  979 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGD  979 (1004)
T ss_pred             HHHHHHHhcchhheecccCCCChHHHHHhcCC
Confidence            99999999999999999999999887766544

>KOG0818|consensus

Probab=99.15  E-value=5.8e-10  Score=72.66  Aligned_cols=85  Identities=25%  Similarity=0.357  Sum_probs=64.6

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCccHHHHHHHhCC
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGR   83 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~--~g~t~l~~a~~~~~   83 (121)
                      .++++..++.++.+....+|. .|+++|+.+ ..|.||||.|+..|+.--++.|+-+|+++...  .|+||+.+|-..||
T Consensus       134 srQLhasvRt~nlet~LRll~-lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLS-LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHH-cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCc
Confidence            356788888888876666554 478888766 55888888888888888888888888888744  47888888888888


Q ss_pred             HHHHHHHHH
Q psy15272         84 PSVAKVLLR   92 (121)
Q Consensus        84 ~~~~~~L~~   92 (121)
                      -++.+.|++
T Consensus       213 ~~laeRl~e  221 (669)
T KOG0818|consen  213 HELAERLVE  221 (669)
T ss_pred             hHHHHHHHH
Confidence            777665554

>KOG4369|consensus

Probab=99.11  E-value=4.9e-11  Score=84.11  Aligned_cols=105  Identities=28%  Similarity=0.334  Sum_probs=87.4

Q ss_pred             HHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCccHHHHHHHhCCHH
Q psy15272          9 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN---KGQRSSSLHYAACFGRPS   85 (121)
Q Consensus         9 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~---~~~g~t~l~~a~~~~~~~   85 (121)
                      .|-.|+..|+. ++.++|...|.++..+|..|.+|+.+|+..|+..+++.|++..+++.   ++.+.|+|.+||..|..+
T Consensus       760 ~LT~acaggh~-e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~  838 (2131)
T KOG4369|consen  760 NLTSACAGGHR-EEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTR  838 (2131)
T ss_pred             cccccccCccH-HHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcch
Confidence            34456666655 55566667799999999999999999999999999999999888876   344778999999999999


Q ss_pred             HHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         86 VAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        86 ~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ++++|+..|++-.-++-..+|||.+|..-
T Consensus       839 vvelLl~~gankehrnvsDytPlsla~Sg  867 (2131)
T KOG4369|consen  839 VVELLLNAGANKEHRNVSDYTPLSLARSG  867 (2131)
T ss_pred             HHHHHHHhhccccccchhhcCchhhhcCc
Confidence            99999999999888888889998887654

>KOG0818|consensus

Probab=99.05  E-value=1.5e-09  Score=70.87  Aligned_cols=73  Identities=33%  Similarity=0.368  Sum_probs=65.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         42 TLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        42 ~~l~~a~~~~~~~~~~~l~~~~~~~~~---~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .-||.+++.++.+..--|+..|++++-   ..|.||||.|+..|+..-+++|+-+|++++..|.+|.||+.+|.+.
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhc
Confidence            467889999999988888899998772   3389999999999999999999999999999999999999999887

>KOG0705|consensus

Probab=99.05  E-value=2.3e-09  Score=71.08  Aligned_cols=90  Identities=27%  Similarity=0.367  Sum_probs=72.7

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCC--Cc--cccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVE--VN--FMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~--~~--~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      +.++.|+...++..+.. |+.+|..  ++  .-+.+|+|+||+|+..|+..+.+.|+..|+++..  ..|+|+|.||-+.
T Consensus       626 qqLl~A~~~~Dl~t~~l-LLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAIL-LLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhc
Confidence            45778888888855544 4555543  22  4567789999999999999999999999998874  4599999999999


Q ss_pred             CCHHHHHHHHHcCCCCC
Q psy15272         82 GRPSVAKVLLRHGANPD   98 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~   98 (121)
                      |.-+|++.|+.+|...+
T Consensus       705 ~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPDE  721 (749)
T ss_pred             ccHHHHHHHHHcCCCcc
Confidence            99999999999987643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.99  E-value=1.1e-09  Score=45.31  Aligned_cols=29  Identities=48%  Similarity=0.689  Sum_probs=26.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy15272         39 VGQTLLNWASAFGTQEMVEFLCERGADVN   67 (121)
Q Consensus        39 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~   67 (121)
                      +|+||||+|+..|+.+++++|++.|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999998875

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.89  E-value=5.5e-09  Score=44.26  Aligned_cols=31  Identities=35%  Similarity=0.596  Sum_probs=28.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy15272         39 VGQTLLNWASAFGTQEMVEFLCERGADVNKG   69 (121)
Q Consensus        39 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   69 (121)
                      +|.||||+|+..++.+++++|++.|++++.+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            4889999999999999999999999988754

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG4369|consensus

Probab=98.87  E-value=3.8e-09  Score=75.02  Aligned_cols=101  Identities=32%  Similarity=0.389  Sum_probs=79.2

Q ss_pred             HHhCChHHHHHHHHhCCCCCcccc--CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC---CCccHHHHHHHhCCHHHHH
Q psy15272         14 IRSKDTDALIETIDSGGVEVNFMD--DVGQTLLNWASAFGTQEMVEFLCERGADVNKG---QRSSSLHYAACFGRPSVAK   88 (121)
Q Consensus        14 ~~~~~~~~v~~ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~---~g~t~l~~a~~~~~~~~~~   88 (121)
                      ++.|.+..+..+++..|..++.+.  ..|.+||++|..+|+...+..|++.|.++++.   +.+|+|-+|+..|..+++.
T Consensus       864 a~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~  943 (2131)
T KOG4369|consen  864 ARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVF  943 (2131)
T ss_pred             hcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHH
Confidence            455556667777777787777554  45778888888888888888888888877743   3568888888888888888


Q ss_pred             HHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         89 VLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        89 ~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +|+...+++..+-+.|.|||.-+++-
T Consensus       944 lLLa~~anvehRaktgltplme~Asg  969 (2131)
T KOG4369|consen  944 LLLAAQANVEHRAKTGLTPLMEMASG  969 (2131)
T ss_pred             HHHHHhhhhhhhcccCCcccchhhcC
Confidence            89888888888888999998887776

>KOG0522|consensus

Probab=98.83  E-value=2.5e-08  Score=65.55  Aligned_cols=86  Identities=28%  Similarity=0.378  Sum_probs=65.5

Q ss_pred             HHHHHHHHhCChHHHHHHHHhC-CCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCCH
Q psy15272          8 RQLIECIRSKDTDALIETIDSG-GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRP   84 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~~   84 (121)
                      .+++.++...+..++.+.+... ...++..|..|+||||.|+..|+...++.|+..|+++.  +..|+++||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            3477777778887887766543 33566778888899999999999998888888888765  44588999999888888


Q ss_pred             HHHHHHHHc
Q psy15272         85 SVAKVLLRH   93 (121)
Q Consensus        85 ~~~~~L~~~   93 (121)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            776666543

>KOG0522|consensus

Probab=98.76  E-value=3.5e-08  Score=64.92  Aligned_cols=75  Identities=25%  Similarity=0.437  Sum_probs=59.5

Q ss_pred             hHHHHHHHcCCHHHHHH-HHHc-CC--CCCCCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhcc
Q psy15272         42 TLLNWASAFGTQEMVEF-LCER-GA--DVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD  116 (121)
Q Consensus        42 ~~l~~a~~~~~~~~~~~-l~~~-~~--~~~~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~~  116 (121)
                      .|+|++......+-+.. |... +.  +..+..|+||||+|+..|+...++.|+..|+++.++|..|++|||-|+..++
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            45888888766554433 3322 22  3335568999999999999999999999999999999999999999998854

>KOG0506|consensus

Probab=98.75  E-value=8.3e-09  Score=67.15  Aligned_cols=77  Identities=29%  Similarity=0.398  Sum_probs=68.4

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CccHHHHHHHhCCHHHHHHHHHc-CCCCCccCcCCCCHHHHHHhh
Q psy15272         38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAACFGRPSVAKVLLRH-GANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        38 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--g~t~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..+-.++++|+..|....++-+.-.|.++..++  .+|+||.|+..|+++++++|+.. +++++.+|.-|.|||.-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            334568899999999999998888888887554  68999999999999999999998 899999999999999999876

>KOG0783|consensus

Probab=98.64  E-value=2.6e-08  Score=68.90  Aligned_cols=78  Identities=18%  Similarity=0.291  Sum_probs=64.9

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHH
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYA   78 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a   78 (121)
                      ++.++++.+|-++..+..+.+.+|| ++|.++..+| ..|+||||-|..+|+.+|+-.|++.|....  +++|.+||...
T Consensus        48 kD~~GR~alH~~~S~~k~~~l~wLl-qhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~  126 (1267)
T KOG0783|consen   48 KDRYGRTALHIAVSENKNSFLRWLL-QHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFL  126 (1267)
T ss_pred             HHhhccceeeeeeccchhHHHHHHH-hcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHH
Confidence            4567888888888888886666655 5599999888 569999999999999999999999997654  67799999876


Q ss_pred             HH
Q psy15272         79 AC   80 (121)
Q Consensus        79 ~~   80 (121)
                      ++
T Consensus       127 ~r  128 (1267)
T KOG0783|consen  127 SR  128 (1267)
T ss_pred             hh
Confidence            65

>KOG3609|consensus

Probab=98.63  E-value=2.4e-07  Score=64.04  Aligned_cols=104  Identities=19%  Similarity=0.232  Sum_probs=86.7

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCC---CCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCccHHHHHHHhC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGV---EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFG   82 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~g~t~l~~a~~~~   82 (121)
                      +...++.|+..|+...|++.+.....   ++|+.|.-|+++++.|..+.+.++.++|++.....    | -+|-+|+..|
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~----g-dALL~aI~~~   99 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE----G-DALLLAIAVG   99 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc----c-hHHHHHHHHH
Confidence            45568899999999999999987654   67899999999999999999999999999987655    2 3888999999


Q ss_pred             CHHHHHHHHHcCCCC----------CccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANP----------DLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~----------~~~~~~g~tpl~~a~~~  114 (121)
                      ..++++.++.+....          ......+-||+.+|+..
T Consensus       100 ~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~  141 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHL  141 (822)
T ss_pred             HHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHh
Confidence            999999999873322          23445677999999987

>KOG0705|consensus

Probab=98.59  E-value=1.4e-07  Score=62.92  Aligned_cols=69  Identities=29%  Similarity=0.341  Sum_probs=56.0

Q ss_pred             HHHcCCHHHHHHHHHcCCCCC------CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         47 ASAFGTQEMVEFLCERGADVN------KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        47 a~~~~~~~~~~~l~~~~~~~~------~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      |........+..|+..|....      ..+|+|+||+|++.|++.+..+|+=+|+++..+|..|.|+|.+|.+.+
T Consensus       631 A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  631 AVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            444455556666777764321      345799999999999999999999999999999999999999998873

>KOG0521|consensus

Probab=98.47  E-value=2.1e-07  Score=65.04  Aligned_cols=77  Identities=43%  Similarity=0.581  Sum_probs=69.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        38 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..|.+++|.|+..+..-..+.|+..|.+++..+  |.+|+|.+...|+...+..++++|++.++.+.+|.+|+.+|.+.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            447899999999999999999999999887544  89999999999999999999999999999999999999998654

>KOG0511|consensus

Probab=98.45  E-value=1.5e-06  Score=55.71  Aligned_cols=61  Identities=33%  Similarity=0.448  Sum_probs=52.4

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN   67 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~   67 (121)
                      +...+++|++.|+.+.|+.++. .|.++|..|....+||.+|+.-|+.++++.|++.|+...
T Consensus        36 ~f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   36 PFGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             chHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            3556889999999988877666 688999999999999999999999999999999998765

>KOG0511|consensus

Probab=98.40  E-value=2.1e-06  Score=55.00  Aligned_cols=67  Identities=33%  Similarity=0.308  Sum_probs=56.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCH
Q psy15272         41 QTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTP  107 (121)
Q Consensus        41 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~--~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tp  107 (121)
                      .--+..||+.|..+.++.|++.|.+++..  +..+||.+|+..||..++++|++.|+--..-..+|.-+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            34678899999999999999999999854  46799999999999999999999998655545566544

>KOG2384|consensus

Probab=98.33  E-value=4.6e-06  Score=48.70  Aligned_cols=64  Identities=27%  Similarity=0.273  Sum_probs=54.2

Q ss_pred             CCCCccccCCCchHHHHHHHcCCHHHHHHHHHcC-CCCC--CCCCccHHHHHHHhCCHHHHHHHHHc
Q psy15272         30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVN--KGQRSSSLHYAACFGRPSVAKVLLRH   93 (121)
Q Consensus        30 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-~~~~--~~~g~t~l~~a~~~~~~~~~~~L~~~   93 (121)
                      +.++|.+|..|+|+++.|+..|..+.+.+|+.+| +.+.  +..+.+++.+|-..|..+++..|.+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4578888999999999999999999999999998 4444  45578899999999999999888876

>KOG0521|consensus

Probab=98.08  E-value=8.3e-06  Score=57.42  Aligned_cols=82  Identities=26%  Similarity=0.310  Sum_probs=69.0

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGR   83 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~   83 (121)
                      +...+|.|+..+.. .++++|+++|.+++..|..|++|+|.+...|+......++++|++.+  +++|.+++++|....+
T Consensus       656 ~~s~lh~a~~~~~~-~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDS-GAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             ccchhhhhhccchH-HHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            35667888888876 77788889999999999999999999999999999999999999887  4568899999977755


Q ss_pred             HHHHH
Q psy15272         84 PSVAK   88 (121)
Q Consensus        84 ~~~~~   88 (121)
                      .+.+-
T Consensus       735 ~d~~~  739 (785)
T KOG0521|consen  735 ADIVL  739 (785)
T ss_pred             ccHHH
Confidence            55443

>KOG0782|consensus

Probab=98.05  E-value=2.3e-05  Score=52.95  Aligned_cols=89  Identities=20%  Similarity=0.277  Sum_probs=72.9

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCC-CccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVE-VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      .....+++|+..|+-+.|+.+|...+.. ++..|..|.|+||-|+-.++..+.++|+..|+....  ..|.||-.-|.+.
T Consensus       898 ~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa  977 (1004)
T KOG0782|consen  898 DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQA  977 (1004)
T ss_pred             chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhc
Confidence            3456789999999998888777665443 456678899999999999999999999999987764  4489999999999


Q ss_pred             CCHHHHHHHHHc
Q psy15272         82 GRPSVAKVLLRH   93 (121)
Q Consensus        82 ~~~~~~~~L~~~   93 (121)
                      +..+++-+|-.+
T Consensus       978 ~d~dlaayle~r  989 (1004)
T KOG0782|consen  978 GDPDLAAYLESR  989 (1004)
T ss_pred             CCchHHHHHhhh
Confidence            999998888654

>KOG2384|consensus

Probab=98.00  E-value=1.7e-05  Score=46.41  Aligned_cols=47  Identities=23%  Similarity=0.181  Sum_probs=43.8

Q ss_pred             CCCCccHHHHHHHhCCHHHHHHHHHcC-CCCCccCcCCCCHHHHHHhh
Q psy15272         68 KGQRSSSLHYAACFGRPSVAKVLLRHG-ANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        68 ~~~g~t~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +..|||++++|+..|..+.+.+|+.+| +.+...+..+.+.+.+|.+.
T Consensus         9 D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~   56 (223)
T KOG2384|consen    9 DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKG   56 (223)
T ss_pred             hhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhc
Confidence            455999999999999999999999999 89999999999999999877

>KOG3609|consensus

Probab=98.00  E-value=3.5e-05  Score=53.89  Aligned_cols=90  Identities=21%  Similarity=0.148  Sum_probs=67.9

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC------------CCCC
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN------------KGQR   71 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~------------~~~g   71 (121)
                      ..+++.++-|+.+.+. ++.++|.+++...       ..+|.+|+..+..++++.++.......            -..+
T Consensus        60 ~lGr~al~iai~nenl-e~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~d  131 (822)
T KOG3609|consen   60 PLGRLALHIAIDNENL-ELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPD  131 (822)
T ss_pred             hHhhhceecccccccH-HHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCC
Confidence            4567778888888888 5556666655443       237788999999999999987543321            1225


Q ss_pred             ccHHHHHHHhCCHHHHHHHHHcCCCCCccC
Q psy15272         72 SSSLHYAACFGRPSVAKVLLRHGANPDLRD  101 (121)
Q Consensus        72 ~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~  101 (121)
                      .||+..|+..++.|++++|+.+|+.+....
T Consensus       132 itPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen  132 ITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             ccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            699999999999999999999998876543

>KOG0520|consensus

Probab=97.99  E-value=1.7e-05  Score=56.35  Aligned_cols=86  Identities=28%  Similarity=0.386  Sum_probs=54.1

Q ss_pred             CCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCC--CCCCCCCccHHHHHHHhCCHHHHHHHHHcCCCCC------ccC
Q psy15272         30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPD------LRD  101 (121)
Q Consensus        30 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~--~~~~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~------~~~  101 (121)
                      +......|..+-..+|+++..+.-..+......|.  ++.+..|+||||||+..|+..++..|+..|++..      ..+
T Consensus       598 ~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~  677 (975)
T KOG0520|consen  598 GSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPET  677 (975)
T ss_pred             ccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCC
Confidence            44444555666667777555544333322223333  4445668999999999999999888887766542      334


Q ss_pred             cCCCCHHHHHHhhc
Q psy15272        102 EDGKTPLDKARERV  115 (121)
Q Consensus       102 ~~g~tpl~~a~~~~  115 (121)
                      ..|.|+..+|.+.+
T Consensus       678 p~g~ta~~la~s~g  691 (975)
T KOG0520|consen  678 PGGKTAADLARANG  691 (975)
T ss_pred             CCCCchhhhhhccc
Confidence            45777777777663

>smart00248 ANK ankyrin repeats

Probab=97.80  E-value=7.6e-05  Score=29.36  Aligned_cols=27  Identities=41%  Similarity=0.490  Sum_probs=17.4

Q ss_pred             CccHHHHHHHhCCHHHHHHHHHcCCCC
Q psy15272         71 RSSSLHYAACFGRPSVAKVLLRHGANP   97 (121)
Q Consensus        71 g~t~l~~a~~~~~~~~~~~L~~~~~~~   97 (121)
                      +.|++|+++..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666667777666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.80  E-value=4.5e-05  Score=50.61  Aligned_cols=60  Identities=32%  Similarity=0.462  Sum_probs=47.3

Q ss_pred             HHHHHHHHHcCCCCC------CCC--CccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHH
Q psy15272         53 QEMVEFLCERGADVN------KGQ--RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR  112 (121)
Q Consensus        53 ~~~~~~l~~~~~~~~------~~~--g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~  112 (121)
                      ...++.|.+.+...+      ..+  -.|+||+|+..|...++..|++.|+++..+|..|.||+.++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            456777777766543      122  358899999999999999999999999999999999988764

>KOG0520|consensus

Probab=97.55  E-value=4.3e-05  Score=54.45  Aligned_cols=80  Identities=25%  Similarity=0.317  Sum_probs=62.5

Q ss_pred             HHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--------CCCCccHHHHHHHhCCHH
Q psy15272         14 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--------KGQRSSSLHYAACFGRPS   85 (121)
Q Consensus        14 ~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--------~~~g~t~l~~a~~~~~~~   85 (121)
                      |..++++-...++.-.+..++++|..|+||||+|+..|+..++..|...|....        ...|.|+-..|...|+..
T Consensus       615 ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~g  694 (975)
T KOG0520|consen  615 CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKG  694 (975)
T ss_pred             hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccc
Confidence            455556566666666788899999999999999999999999999998775433        234788999998888888


Q ss_pred             HHHHHHHc
Q psy15272         86 VAKVLLRH   93 (121)
Q Consensus        86 ~~~~L~~~   93 (121)
                      +..+|-+.
T Consensus       695 ia~~lse~  702 (975)
T KOG0520|consen  695 IAGYLSEK  702 (975)
T ss_pred             hHHHHhhh
Confidence            77766543

>smart00248 ANK ankyrin repeats

Probab=97.48  E-value=0.00038  Score=27.16  Aligned_cols=27  Identities=41%  Similarity=0.682  Sum_probs=23.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCC
Q psy15272         40 GQTLLNWASAFGTQEMVEFLCERGADV   66 (121)
Q Consensus        40 ~~~~l~~a~~~~~~~~~~~l~~~~~~~   66 (121)
                      +.+|+|+++..+..++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            678999999999999999999887654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.20  E-value=0.0024  Score=42.84  Aligned_cols=66  Identities=24%  Similarity=0.371  Sum_probs=49.7

Q ss_pred             HhCChHHHHHHHHhCCCCCcc------ccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CccHHHHHHH
Q psy15272         15 RSKDTDALIETIDSGGVEVNF------MDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAAC   80 (121)
Q Consensus        15 ~~~~~~~v~~ll~~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~--g~t~l~~a~~   80 (121)
                      ..++.+.....|.+.+.+.|.      .+..-.|+||+|+..|...++.+|++.|+++..++  |.||..++..
T Consensus       399 kk~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  399 KKKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             hccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            445555666667776665542      23335699999999999999999999999988555  7899988763

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.72  E-value=0.54  Score=23.55  Aligned_cols=19  Identities=26%  Similarity=0.417  Sum_probs=8.9

Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q psy15272         43 LLNWASAFGTQEMVEFLCE   61 (121)
Q Consensus        43 ~l~~a~~~~~~~~~~~l~~   61 (121)
                      .+..|+..-+.+++++|++
T Consensus        35 ~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen   35 CLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHHHhhHHHHHHHHH
Confidence            3444444444444444444

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.65  E-value=1.6  Score=21.83  Aligned_cols=47  Identities=19%  Similarity=0.285  Sum_probs=39.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCccHHHHHHHhCCHHHHHHHHHc
Q psy15272         42 TLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRH   93 (121)
Q Consensus        42 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L~~~   93 (121)
                      ..+..|+..|+.++++.+++.+ .+.    ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~----~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD----NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH----HHHHHHHHHHhhHHHHHHHHHh
Confidence            4678899999999999998765 222    3479999999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.01  E-value=4.7  Score=25.17  Aligned_cols=46  Identities=28%  Similarity=0.456  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHHcCC-CCCC-----CCCccHHHHHHHhCCHHHHHHHHHcCCC
Q psy15272         51 GTQEMVEFLCERGA-DVNK-----GQRSSSLHYAACFGRPSVAKVLLRHGAN   96 (121)
Q Consensus        51 ~~~~~~~~l~~~~~-~~~~-----~~g~t~l~~a~~~~~~~~~~~L~~~~~~   96 (121)
                      ....+++.++.+|. +++.     ..|.|-|.-|...++.+.+.+|++.|+-
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            34566777777773 4442     3366777777777888888888877763

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=87.64  E-value=5  Score=25.06  Aligned_cols=46  Identities=35%  Similarity=0.415  Sum_probs=34.0

Q ss_pred             HHHHHHHhCCCCCc---cccCCCchHHHHHHHcCCHHHHHHHHHcCCCC
Q psy15272         21 ALIETIDSGGVEVN---FMDDVGQTLLNWASAFGTQEMVEFLCERGADV   66 (121)
Q Consensus        21 ~v~~ll~~~~~~~~---~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~   66 (121)
                      .+..++...-.++|   ..-+.|.|-|.-|..++..+++..|++.|+..
T Consensus       232 vL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  232 VLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            33444444334565   33477999999999999999999999999754

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=80.67  E-value=6.9  Score=23.52  Aligned_cols=93  Identities=18%  Similarity=0.164  Sum_probs=54.3

Q ss_pred             HHH-HHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHH----HHHHcCCCCCCCCC----ccHHHHHHH
Q psy15272         10 LIE-CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVE----FLCERGADVNKGQR----SSSLHYAAC   80 (121)
Q Consensus        10 l~~-a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~----~l~~~~~~~~~~~g----~t~l~~a~~   80 (121)
                      +++ ||+..+++.|++. .+   ++..  .+-.+.+..|......++..    .++.+.......+.    ..-|.+|+.
T Consensus        79 LFElAC~~qkydiV~WI-~q---nL~i--~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~  152 (192)
T PF03158_consen   79 LFELACEEQKYDIVKWI-GQ---NLHI--YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAA  152 (192)
T ss_pred             HHHHHHHHccccHHHHH-hh---ccCC--CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHH
Confidence            444 7777888666664 22   2322  22234566777777766532    23333222211111    135677888


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .|....+...+.+|.+++.      +.|..|+..
T Consensus       153 kgll~F~letlkygg~~~~------~vls~Av~y  180 (192)
T PF03158_consen  153 KGLLPFVLETLKYGGNVDI------IVLSQAVKY  180 (192)
T ss_pred             CCCHHHHHHHHHcCCcccH------HHHHHHHHh
Confidence            8999888888888877764      577777665

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-13
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-13
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-13
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-12
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-12
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-12
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		6e-12
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-12
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-12
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-11
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-11
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-11
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-10
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-10
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-10
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-10
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-09
1uoh_A	226	Human Gankyrin Length = 226		1e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-09
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-08
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-08
3deo_A	183	Structural Basis For Specific Substrate Recognition		7e-08
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		7e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		9e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-07
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		2e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-07
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		2e-07
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		3e-07
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-07
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		3e-07
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		3e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		5e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		6e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		6e-07
3so8_A	162	Crystal Structure Of Ankra Length = 162		6e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		7e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-06
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		1e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		1e-05
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-05
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-05
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		2e-05
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		2e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		8e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		9e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		2e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-04
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-04
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		5e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		6e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		7e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++LIE   + + D + + I++G  +VN  D  G+T L++A+  G +E+V+ L  +GADVN
Sbjct: 6   KRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                  + LHYAA  G   + K+L+  GA+ + +D DG+TPL  A +   EGH+E
Sbjct: 65  AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK---EGHKE 117

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++LIE   + + D + + +++G  + N  D  G+T L++A+  G +E+V+ L  +GAD N
Sbjct: 6   KRLIEAAENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                  + LHYAA  G   + K+LL  GA+P+ +D DG+TPL  A E    GH+E
Sbjct: 65  AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN---GHKE 117

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++LIE   + + D + + +++G  +VN  D  G+T L+ A+  G +E+V+ L  +GAD N
Sbjct: 6   KRLIEAAENGNKDRVKDLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 68  KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                  + LH AA  G   V K+LL  GA+P+ +D DGKTPL  A E    GH+E
Sbjct: 65  AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN---GHKE 117

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D VG T L+ A+ +G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGRDDE-VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 68  KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                 S+ LH AA FG   + +VLL++GA+ + +D++G TPL  A  R   GH E
Sbjct: 75  AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR---GHLE 127

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++LIE   + + D + + I++G  +VN  D  G+T L+ A+  G +E+V+ L  +GADVN
Sbjct: 6   KRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                  + LH+AA  G   V K+L+  GA+ + +D DG+TPL  A E    GH+E
Sbjct: 65  AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN---GHKE 117

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D+ G T L+ A++ G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
               +  + LH AA  G   + +VLL+HGA+ +  D DG TPL  A +    GH E
Sbjct: 75  ASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY---GHLE 127

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  DD G+T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 68  KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              +   + LH AA +G   + +VLL++GA+ +  D  G TPL  A    D GH E
Sbjct: 75  AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLA---ADAGHLE 127

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGRDDE-VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
               +  + L  AA FG   + +VLL++GA+ +  D +G TPL  A
Sbjct: 75  AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+ A+ +   E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 68  KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
                 S+ LH AA FG   + +VLL+HGA+ + +D+ GKT  D
Sbjct: 75  AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFD 118

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D+ G T L  A+A G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 68  K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
                  + LH AA  G   +A+VLL+HGA+ + +D+ GKT  D
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN MDD G T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 68  KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
                  + LH AA  G   + +VLL +GA+ + +D+ GKT  D
Sbjct: 75  ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD 118

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+ A+ +G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 68  K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
                 S+ LH AA  G   + +VLL+HGA+ +  D  G TPL  A
Sbjct: 75  AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN +D+ G T L+ A+  G  E+VE L + GADV+
Sbjct: 16  KKLLEAARAGQDDE-VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                  + LH AA  G   + +VLL++GA+ +  D  G TPL  A    DEGH E
Sbjct: 75  AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA---ADEGHLE 127

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+ A+ +G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 68  K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
                 S+ LH AA  G   + +VLL+HGA+ +  D  G TPL  A
Sbjct: 75  AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN MDD G T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 68  KGQ--RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
                  + LH AA  G   + +VLL +GA+ + +D+ GKT  D
Sbjct: 75  ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD 118

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G + N  D  G+T L+ A+A G  E+VE L   GADVN
Sbjct: 4   KKLLEAARAGQDDE-VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 68  K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
                 ++ LH AA  G   + +VLL++GA+ + +D  G TPL
Sbjct: 63  AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPL 105

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  DD G T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                  + LH AA  G   + +VLL++GA+ + +D  G TPL  A +R   GH E
Sbjct: 75  ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR---GHLE 127

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D VG T L+ A+ FG  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 68  KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                  + LH AA  G   V +VLL++GA+ +  D +G TPL  A    + GH E
Sbjct: 75  ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLA---ANIGHLE 127

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN MDD G T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 68  KGQ--RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
                  + LH AA  G   + +VLL +GA+ + +D+ GKT  D
Sbjct: 75  ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD 118

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           R+L+E  R+   D  +  + + G +VN  D+ G T L+ A+  G  E+VE L + GADV+
Sbjct: 16  RKLLEAARAGQDDE-VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 68  KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
                  + LH AA +G   + +VLL++GA+ +  D DG TPL  A
Sbjct: 75  ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA 120

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D +G T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 68  K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                 ++ LH AA  G   + +VLL+HGA+ + +D +G TPL  A     +GH E
Sbjct: 75  AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAY---DGHLE 127

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN +D+ G T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 68  KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
                  + LH AA  G   + +VLL+HGA+ + +D+ GKT  D
Sbjct: 75  AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFD 118

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E   +   D  +  + + G +VN  DD G T L+ A+A G  E+VE L + GADVN
Sbjct: 8   KKLLEAAAAGQDDE-VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
               +  + LH AA  G   + +VLL+HGA+ +  D  G TPL  A
Sbjct: 67  ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+ A+  G  E+VE L + GADVN
Sbjct: 4   KKLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              +   + LH AA  G   + +VLL+ GA+ + +D+DG TPL  A     EGH E
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR---EGHLE 115

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 68  KGQRSSS--LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
               S S  LH AA  G   + +VLL++GA+ +  D  G TPL  A    D GH E
Sbjct: 75  ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLA---ADTGHLE 127

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+ A+  G  E+VE L + GADVN
Sbjct: 4   KKLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              +   + LH AA  G   + +VLL+ GA+ + +D+DG TPL  A     EGH E
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR---EGHLE 115

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              +   + LH AA  G   + +VLL+ GA+ + +D+DG TPL  A     EGH E
Sbjct: 75  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR---EGHLE 127

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+ A+ FG  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 68  KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                  + LH AA  G   + +VLL++GA+ +  D  G TPL  A +R   GH E
Sbjct: 75  AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKR---GHLE 127

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D VG T L+ A+     E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 68  K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
                  + LH  A +G   + +VLL+HGA+ + +D+ GKT  D
Sbjct: 75  AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFD 118

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 21  ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYA 78
           +++E +   G +V+  D  G   L+ A ++G  E+ E L + GA VN     + + LH A
Sbjct: 56  SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
Query: 79  ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
           A  G+  + K+LL+HGA+P  ++ DG TPLD  ++
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 150

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+ A+  G  E+VE L + GADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
               +  + LH AA      + +VLL+HGA+ + +D+ GKT  D + +  +E
Sbjct: 75  ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 21  ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYA 78
           +++E +   G +V+  D  G   L+ A ++G  E+ E L + GA VN     + + LH A
Sbjct: 60  SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 119
Query: 79  ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
           A  G+  + K+LL+HGA+P  ++ DG TPLD  ++
Sbjct: 120 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 154

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 21  ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYA 78
           +++E +   G +V+  D  G   L+ A ++G  E+ E L + GA VN     + + LH A
Sbjct: 58  SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 117
Query: 79  ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
           A  G+  + K+LL+HGA+P  ++ DG TPLD  ++
Sbjct: 118 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 152

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
           +++ +   G +VN  D  G+T L+ A+  G  E+V+ L E GADVN   ++  + LH AA
Sbjct: 17  VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76
Query: 80  CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
             G   V K+LL  GA+ + +D++G+TPL  A
Sbjct: 77  RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
           ++E +   GV VN  DD G + L+ A++ G  E+V+ L  +GA VN   ++  + LHYAA
Sbjct: 55  IVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Query: 80  CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
              R  +A +LL  GANPD +D    T + +A  +
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++L+E  R+   D  +  + + G +VN  D  G T L+     G  E++E L +  ADVN
Sbjct: 16  KKLLEAARAGQDDE-VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              +S  + LH AA  G   + +VLL++GA+ +  D  G TPL  A E   +GH E
Sbjct: 75  ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAE---DGHLE 127

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
           ++E +   GV VN  DD G + L+ A++ G  E+V+ L  +GA VN   ++  + LHYAA
Sbjct: 55  IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Query: 80  CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
              R  +A +LL  GANPD +D    T + +A  +
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
           ++E +   GV VN  DD G + L+ A++ G  E+V+ L  +GA VN   ++  + LHYAA
Sbjct: 55  IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 114
Query: 80  CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
              R  +A +LL  GANPD +D    T + +A  +
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK 149

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
           ++E +   GV VN  DD G + L+ A++ G  E+V+ L  +GA VN   ++  + LHYAA
Sbjct: 56  IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 115
Query: 80  CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
              R  +A +LL  GANPD +D    T + +A  +
Sbjct: 116 SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK 150

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVA 87
           GV V+    +G T L+ AS +G  ++V+FL +  ADVN   +   S LH AA  G   + 
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV 360
Query: 88  KVLLRHGANPDLRDEDGKTPLDKAR 112
            +LL++GA+P+    DG TPL  A+
Sbjct: 361 TLLLKNGASPNEVSSDGTTPLAIAK 385

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAA 79
           + E + S G  VN  D  G+T L W+  FG  EM  FL E GA+VN    +  + L  A+
Sbjct: 83  IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS 142
Query: 80  CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
            +GR  + K LL  GA+   RD  G T    AR
Sbjct: 143 KYGRSEIVKKLLELGADISARDLTGLTAEASAR 175

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 18  DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD--VNKGQRSSSL 75
           + D L E +  G   VN  D+ G T L WASAFG  E V FL E GAD  +   +R S+L
Sbjct: 14  ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESAL 73
Query: 76  HYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
             A+  G   +  +LL    + ++ D +G TPL
Sbjct: 74  SLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 18  DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD--VNKGQRSSSL 75
           + D L E +  G   VN  D+ G T L WASAFG  E V FL E GAD  +   +R S+L
Sbjct: 14  ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESAL 73
Query: 76  HYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
             A+  G   +  +LL    + ++ D +G TPL
Sbjct: 74  SLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANP 97
           G+T L+ A+  G  E+V+ L E GADVN   ++  + LH AA  G   V K+LL  GA+ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98  DLRDEDGKTPLDKA 111
           + +D++G+TPL  A
Sbjct: 62  NAKDKNGRTPLHLA 75

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 15  RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRS- 72
           R  D  AL + ++    +V+ +D+ G+T L + +  G+ + V  L E GAD++ +  R  
Sbjct: 53  RKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 73  -SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
            ++LH AA + RP V + L+  GA+ ++ DE G T L+ ARE
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 15  RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRS- 72
           R  D  AL + ++    +V+ +D+ G+T L + +  G+ + V  L E GAD++ +  R  
Sbjct: 54  RKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 111
Query: 73  -SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
            ++LH AA + RP V + L+  GA+ ++ DE G T L+ ARE
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 20  DALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD--VNKGQRSSSLHY 77
           D +   I  G +      D+  T L+WA+  G   MV  L + GAD  +  G+  S +H 
Sbjct: 56  DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
Query: 78  AACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
           AA FG  S+   L+  G + D+ D++G TPL  A  R
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR 152

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 21  ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYA 78
           A++E +   G  +N M+    T L+ A++ G +++V+ L +  AD+N      +  LHYA
Sbjct: 48  AVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 107
Query: 79  ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +G+  VA+ L+ +GA   + ++ G+ P+DKA+  + E  RE
Sbjct: 108 CFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 150

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAA 79
           ++E + +   +VN +DD+G++ L+WA+A    +    L + GA  D+   +  + L  AA
Sbjct: 30  MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAA 89
Query: 80  CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
             G    AKVLL H AN D+ D   + P D A+ER+
Sbjct: 90  REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 125

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 21  ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYA 78
           A++E +   G  +N M+    T L+ A++ G +++V+ L +  AD+N      +  LHYA
Sbjct: 53  AVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112
Query: 79  ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +G+  VA+ L+ +GA   + ++ G+ P+DKA+  + E  RE
Sbjct: 113 CFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 155

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAA 79
           ++E + +   +VN +DD+G++ L+WA+A    +    L + GA  D+   +  + L  AA
Sbjct: 104 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAA 163
Query: 80  CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
             G    AKVLL H AN D+ D   + P D A+ER+
Sbjct: 164 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 199

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 19  TDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLH 76
            + ++E + +   +VN +DD+G++ L+WA+A    +    L + GA  D+   +  + L 
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 77  YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
            AA  G    AKVLL H AN D+ D   + P D A+ER+
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 202

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 19  TDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLH 76
            + ++E + +   +VN +DD+G++ L+WA+A    +    L + GA  D+   +  + L 
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 77  YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
            AA  G    AKVLL H AN D+ D   + P D A+ER+
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 19  TDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLH 76
            + ++E + +   +VN +DD+G++ L+WA+A    +    L + GA  D+   +  + L 
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 77  YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
            AA  G    AKVLL H AN D+ D   + P D A+ER+
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 19  TDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLH 76
            + ++E + +   +VN +DD+G++ L+WA+A    +    L + GA  D+   +  + L 
Sbjct: 137 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 196
Query: 77  YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
            AA  G    AKVLL H AN D+ D   + P D A+ER+
Sbjct: 197 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 235

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 5   WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 64
           + K +L+E  RS + + L+  +    V  +  D    T L+ A+ +    +V+ L + GA
Sbjct: 23  YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 65  DVNKGQRSS--SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
           DV+   +     LH A  +G   V ++LL+HGA  +  D    TPL +A  +
Sbjct: 83  DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK 134

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 33  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD---VNKGQRSSSLHYAACFGRPSVAKV 89
           +N  D+ G T L WA+A G   +VEFL + GAD   + KG R S+L  A   G   + K+
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-RESALSLACSKGYTDIVKM 87
Query: 90  LLRHGANPDLRDEDGKTPLDKA 111
           LL  G + +  D +G TPL  A
Sbjct: 88  LLDCGVDVNEYDWNGGTPLLYA 109

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 16  SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSS-- 73
           S DT+ ++  ++ G  ++N+ +  G T L+ A      +MV+FL E GA++N+       
Sbjct: 50  SGDTEEVLRLLERGA-DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI 108
Query: 74  SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
            LH AA  G   +A+ L+  GA+    + +G TPLD
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 33  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD---VNKGQRSSSLHYAACFGRPSVAKV 89
           +N  D+ G T L WA+A G   +VEFL + GAD   + KG R S+L  A   G   + K+
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-RESALSLACSKGYTDIVKM 85
Query: 90  LLRHGANPDLRDEDGKTPLDKA 111
           LL  G + +  D +G TPL  A
Sbjct: 86  LLDCGVDVNEYDWNGGTPLLYA 107

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 33  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD---VNKGQRSSSLHYAACFGRPSVAKV 89
           +N  D+ G T L WA+A G   +VEFL + GAD   + KG R S+L  A   G   + K+
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-RESALSLACSKGYTDIVKM 103
Query: 90  LLRHGANPDLRDEDGKTPLDKA 111
           LL  G + +  D +G TPL  A
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYA 125

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVAKVLLRHGANP 97
           G T L+ A+  G  E V+ L  +GADVN   +  ++ LH AA  G   + K+LL  GA+ 
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 98  DLRDEDGKTPLDKARERVDEGHRE 121
           + R +DG TP   A++    GH E
Sbjct: 69  NARSKDGNTPEHLAKK---NGHHE 89

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAA 79
           ++E + +   ++N  D+ G+T L+WA+A    E V  L    A  D    +  + L  AA
Sbjct: 133 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA 192
Query: 80  CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
             G    +K LL + AN ++ D   + P D A ER+
Sbjct: 193 REGSYEASKALLDNFANREITDHMDRLPRDVASERL 228

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGR 83
           + +G ++VN  DD G T + WA+ +   ++V+ L  +G+D+N    + +  LH+AA  G 
Sbjct: 97  LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156
Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLD-KARER 114
             +A++LL    +    +  G +PL   ARE 
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIAAREN 188

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 4   CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG 63
           C P   L +C +       +  + + G+ VN     G + L+ A+  G  +++  L + G
Sbjct: 53  CHP---LCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHG 109
Query: 64  ADVNKGQRSS----SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
           A  N G R++     LH A   G   V K LL   A P+ +D  G TPL  A      GH
Sbjct: 110 A--NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYA---CSGGH 164
Query: 120 RE 121
            E
Sbjct: 165 HE 166

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-- 67
          L+E    +DT  + E +     +V+ +D  G T LN A      E+ + L +RGAD+N  
Sbjct: 9  LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDL 99
               S   YA   GR  +   +L+H A PDL
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKH-ATPDL 99

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 30  GVEVNFMDDVGQ---TLLNWASAFGTQEMVEFLCERGADVNKGQRSS--SLHYAACFGRP 84
           G +VN+++  GQ   T L  A+A  +    EFL + GA+VN+   +    LH+A   G  
Sbjct: 223 GADVNWVNG-GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
            +A + L+ GA+   RD +G+ PL  A E  +
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETAN 313

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 30  GVEVNFMDDVGQ---TLLNWASAFGTQEMVEFLCERGADVNKGQRSS--SLHYAACFGRP 84
           G +VN+++  GQ   T L  A+A  +    EFL + GA+VN+   +    LH+A   G  
Sbjct: 223 GADVNWVNG-GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
            +A + L+ GA+   RD +G+ PL  A E  +
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETAN 313

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 54  EMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
           ++V+ L E GA+VN  +     + LH A    R  + ++LLRHGA+P LR ++G TP 
Sbjct: 19  DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 30  GVEVNFMDDVGQ---TLLNWASAFGTQEMVEFLCERGADVNKGQRSS--SLHYAACFGRP 84
           G +VN+++  GQ   T L  A+A  +    EFL + GA+VN+   +    LH+A   G  
Sbjct: 223 GADVNWVNG-GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
            +A + L+ GA+   RD +G+ PL  A E  +
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETAN 313

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 31  VEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNKGQR--SSSLHYAACFGRPSVA 87
           V VN +D  G T L WA   G +++VE L  +   ++N+  +   ++LH AA  G   + 
Sbjct: 97  VGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156
Query: 88  KVLLRHGANPDLRDEDGKTPLDKA 111
           ++LL  GA  DLR+ + K   D A
Sbjct: 157 QLLLAKGARTDLRNIEKKLAFDXA 180

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 54  EMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
           ++V+ L E GA+VN  +     + LH A    R  + ++LLRHGA+P LR ++G TP 
Sbjct: 39  DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 38  DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGA 95
           D+G+ LL  A A G  + V  L   GADVN   +   + LH AA  G   + +VLL+ GA
Sbjct: 1   DLGKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 96  NPDLRDEDGKTPLD 109
           + + +D+ GKT  D
Sbjct: 60  DVNAQDKFGKTAFD 73

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGAN 96
           G T L+ A      EMV  L + GAD+NK + +   + LH A      SV ++LL+ GA+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 97  PDLRDEDGKTPLDKARER 114
           P  R   G+TPL  A  R
Sbjct: 218 PTARMYGGRTPLGSALLR 235

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGAN 96
           G T L+ A      EMV  L + GAD+NK + +   + LH A      SV ++LL+ GA+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 97  PDLRDEDGKTPLDKARER 114
           P  R   G+TPL  A  R
Sbjct: 218 PTARMYGGRTPLGSALLR 235

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++ +  +++ D D + + + + G +VN   + G+  L++A+  G  E++EFL  +GAD+N
Sbjct: 4   KEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
              +   + L  A   G  S  K+LL  GA+  ++  DG T L+
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 38  DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSVAKVLLRHGA 95
           D+G+ LL  A A G  + V  L   GADV    ++ S  LH AA  G   V K+LL  GA
Sbjct: 5   DLGKKLLEAARA-GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 96  NPDLRDEDGKTPLD 109
           + + +D+ GKT  D
Sbjct: 64  DVNAQDKFGKTAFD 77

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           ++ +  +++ D D + + + + G +VN   + G+  L++A+  G  E++EFL  +GAD+N
Sbjct: 9   KEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 68  KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
              +   + L  A   G  S  K+LL  GA+  ++  DG T  +
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 13  CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----K 68
           C+R     AL+++   G +++   +  G T L+ A     QE V+ L ERGAD++    K
Sbjct: 94  CLR-----ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 148
Query: 69  GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
             RS  +H A      S+ ++LL+HGAN + +   G + L  A  R
Sbjct: 149 SGRSPLIH-AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR 193

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 38  DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSVAKVLLRHGA 95
           D+G+ LL  A A G  + V  L   GADV    ++ S  LH AA  G   V K+LL  GA
Sbjct: 23  DLGKKLLEAARA-GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Query: 96  NPDLRDEDGKTPLD 109
           +   +D+ GKT  D
Sbjct: 82  DVXAQDKFGKTAFD 95

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 55  MVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
           +V+FL +   +++K  G+ S++LHY          K+LLR  A+ ++ +E G+TPLD A+
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 113 ERVDEGHRE 121
            R+   H E
Sbjct: 247 -RLKHEHCE 254

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 23  IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAAC 80
           +E +   G + N  D  G T L+ A   G  ++VE L +  A VN    Q  S LH AA 
Sbjct: 26  VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85
Query: 81  FGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
            G   + K+LL +GA+ +  +  G  P+D
Sbjct: 86  NGHVDIVKLLLSYGASRNAVNIFGLRPVD 114

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 38  DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS-LHYAACFGRPSVAKVLLRHGAN 96
           D+G+ LL  A A G  + V  L   GA        +S LH AA +G  S  +VLLR G +
Sbjct: 1   DLGKKLLEAARA-GQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 97  PDLRDEDGKTPLDKARERVDEGH 119
            D R +  +TPL  A     EGH
Sbjct: 60  RDARTKVDRTPLHMA---ASEGH 79

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 55  MVEFLCERGA--DVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
           +V+F+ + G   D      +++LHYAA + +P   K+LL+  A     +E G+T LD AR
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Query: 113 ER 114
           ++
Sbjct: 249 KK 250

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 4   CWPKRQ-LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL------------LNWASAF 50
           C P+ Q L   I ++D  +++E   +G        D GQ L            L+ A   
Sbjct: 148 CTPEPQRLWTAICNRDLLSVLEAFANG-------QDFGQPLPGPDAQAPEELVLHLAVKV 200
Query: 51  GTQ---EMVEFLCERGA--DVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGK 105
             Q    +V+F+ + G   D      +++LHYAA + +P   K+LL+  A     +E G+
Sbjct: 201 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 260
Query: 106 TPLDKARER 114
           T LD AR++
Sbjct: 261 TALDIARKK 269

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSL--HYAACFGRPSVA 87
           G   N  D  G + ++ A+  G  + ++ L E GADVN    + SL  H A   G  SV 
Sbjct: 64  GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV 123
Query: 88  KVLLRHGANPDL--RDEDGKTPLDKARER 114
             L       DL  RD  G TPL+ AR+R
Sbjct: 124 SFL---APESDLHHRDASGLTPLELARQR 149

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSL--HYAACFGRPSVA 87
           G   N  D  G + ++ A+  G  + ++ L E GADVN    + SL  H A   G  SV 
Sbjct: 66  GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV 125
Query: 88  KVLLRHGANPDL--RDEDGKTPLDKARER 114
             L       DL  RD  G TPL+ AR+R
Sbjct: 126 SFL---APESDLHHRDASGLTPLELARQR 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-27
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-25
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-23
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-21
2rfa_A	232	Transient receptor potential cation channel subfa	5e-19
2rfa_A	232	Transient receptor potential cation channel subfa	2e-16
2rfa_A	232	Transient receptor potential cation channel subfa	2e-15
2rfa_A	232	Transient receptor potential cation channel subfa	9e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-21
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
2pnn_A	273	Transient receptor potential cation channel subfa	8e-20
2pnn_A	273	Transient receptor potential cation channel subfa	1e-14
2pnn_A	273	Transient receptor potential cation channel subfa	6e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-06
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-15
2etb_A	256	Transient receptor potential cation channel subfam	6e-14
2etb_A	256	Transient receptor potential cation channel subfam	6e-12
2etb_A	256	Transient receptor potential cation channel subfam	1e-10
2etb_A	256	Transient receptor potential cation channel subfam	5e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-04

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 96.7 bits (242), Expect = 3e-27
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
             G + N  D  G T L+ A   G  ++VE L +  A VN    Q  S LH AA  G   
Sbjct: 31  QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVD 90

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           + K+LL +GA+ +  +  G  P+D      DE  + 
Sbjct: 91  IVKLLLSYGASRNAVNIFGLRPVDYT---DDESMKS 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 84.0 bits (209), Expect = 3e-22
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPS 85
           G++    +  G+TLL+ AS  G    VE+L + G+D N     G   + LH A   G   
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW--TPLHEACNHGHLK 57

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           V ++LL+H A  +       +PL  A      GH +
Sbjct: 58  VVELLLQHKALVNTTGYQNDSPLHDA---AKNGHVD 90

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.8 bits (154), Expect = 4e-14
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
                VN       + L+ A+  G  ++V+ L   GA  N     G     + Y      
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL--RPVDYTDDESM 121

Query: 84  PSVAKVLLRHGAN 96
            S+  +  ++ ++
Sbjct: 122 KSLLLLPEKNESS 134

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 96.3 bits (241), Expect = 3e-27
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
           + G +VN   + G+  L++A+  G  E++EFL  +GAD+N       + L  A   G  S
Sbjct: 28  AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS 87

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             K+LL  GA+  ++  DG T  +      ++  + 
Sbjct: 88  CVKLLLSKGADKTVKGPDGLTAFEAT---DNQAIKA 120

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 83.2 bits (207), Expect = 4e-22
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVAKVLLRHGANP 97
                 WA   G  + V+    +G DVN+        LHYAA  G+  + + LL  GA+ 
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 98  DLRDEDGKTPLDKARERVDEGHRE 121
           +  D+   TPL  A   V EGH  
Sbjct: 67  NAPDKHHITPLLSA---VYEGHVS 87

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.2 bits (129), Expect = 2e-10
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 63  GADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           G   +         +A   G     K  +  G + +   E G+ PL  A    D G  E
Sbjct: 1   GPLGSMC--DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA---ADCGQLE 54

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 98.0 bits (245), Expect = 4e-27
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRS--SSLHYAACFGRPSV 86
             +V+ +D+ G+T L + +  G+ + V  L E GAD++ +  R   ++LH AA + RP V
Sbjct: 66  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 125

Query: 87  AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            + L+  GA+ ++ DE G T L+ ARE        
Sbjct: 126 VEALVELGADIEVEDERGLTALELARE---ILKTT 157

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 74.8 bits (185), Expect = 3e-18
 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 7/96 (7%)

Query: 27  DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPS 85
           +   +  +     G          G            ADV  + +  +    AA      
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE--TPWWTAARKADEQ 58

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
               LL    + D  DE+G+T L         G  +
Sbjct: 59  ALSQLL-EDRDVDAVDENGRTALLFV---AGLGSDK 90

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 64.4 bits (158), Expect = 3e-14
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 28  SGGVEVNFMDD-VGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFG 82
             G +++  D   G T L+ A+ +   E+VE L E GAD+     +G   ++L  A    
Sbjct: 97  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL--TALELAREIL 154

Query: 83  RPSVAKVLLRHGANPDLRD 101
           + +     ++ G    L  
Sbjct: 155 KTTPKGNPMQFGRRIGLEK 173

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 97.1 bits (243), Expect = 5e-27
 Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGR 83
           +  G   VN  D+ G T L WASAFG  E V FL E GAD +    +R S+L  A+  G 
Sbjct: 22  LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +  +LL    + ++ D +G TPL  A   V   H +
Sbjct: 82  TDIVGLLLERDVDINIYDWNGGTPLLYA---VRGNHVK 116

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 91.3 bits (228), Expect = 8e-25
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
             G + + +    ++ L+ AS  G  ++V  L ER  D+N       + L YA       
Sbjct: 57  EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             + LL  GA+     + G TP+D A   V  G+R+
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLA---VALGYRK 149

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 84.4 bits (210), Expect = 5e-22
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
              V++N  D  G T L +A      + VE L  RGAD+        + +  A   G   
Sbjct: 90  ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK 149

Query: 86  VAKVLLRHGANPDLRDEDGKTP 107
           V +V+  H       +     P
Sbjct: 150 VQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 76.3 bits (189), Expect = 6e-19
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGAD-VNKG--QRSSSLHYAACFGRPSVAKVLLRHGAN 96
               ++  +A G  + ++    +G + VNK   +  + L +A+ FG     + LL  GA+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 97  PDLRDEDGKTPLDKARERVDEGHRE 121
           P +  ++ ++ L  A      G+ +
Sbjct: 62  PHILAKERESALSLA---STGGYTD 83

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 95.6 bits (239), Expect = 2e-26
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGR 83
           +D+   ++N  DD G + L+WA   G   +VE L  RGA +N   R   + LH AA  G 
Sbjct: 25  LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             + + LL++ A+ +  +E G  PL  A      G  +
Sbjct: 85  RDIVQKLLQYKADINAVNEHGNVPLHYA---CFWGQDQ 119

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 94.0 bits (235), Expect = 9e-26
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
             G  +N M+    T L+ A++ G +++V+ L +  AD+N      +  LHYA  +G+  
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           VA+ L+ +GA   + ++ G+ P+DKA+         
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKA---PLREL 152

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 78.6 bits (195), Expect = 8e-20
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 37  DDVGQTLLNWASAFGTQEMVEFLCERGA-DVNKG--QRSSSLHYAACFGRPSVAKVLLRH 93
                  +      G    V    +    D+N+G     S LH+A   GR +V ++L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 94  GANPDLRDEDGKTPLDKARERVDEGHRE 121
           GA  ++ +    TPL  A      GHR+
Sbjct: 62  GARINVMNRGDDTPLHLA---ASHGHRD 86

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 69.0 bits (170), Expect = 5e-16
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPS 85
             ++N +++ G   L++A  +G  ++ E L   GA V+     G+    +  A    R  
Sbjct: 95  KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE--MPVDKAKAPLREL 152

Query: 86  VAKVLLRHGANP---DLRDEDGKT 106
           + +   + G N      +D   K 
Sbjct: 153 LRERAEKMGQNLNRIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.4 bits (101), Expect = 5e-06
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRP 84
           G  V+  +  G+  ++ A A   + + E   + G ++N+             G  
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR----IPYKDTFWKGTT 178

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.3 bits (246), Expect = 2e-26
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
           SG +        G T L+ A+A G  E+++ L +   DVN       + LH AA +G+  
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERV 115
             ++L+ +  + +  ++ G+T  D A E +
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDI 276

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 97.2 bits (243), Expect = 6e-26
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
             G ++N+ +  G T L+ A      +MV+FL E GA++N+    G     LH AA  G 
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW--IPLHAAASCGY 118

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +A+ L+  GA+    + +G TPLD A    +E   E
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIA---EEEAMEE 153

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.0 bits (188), Expect = 7e-18
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 37  DDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAKVLLRHGA 95
           D   +         G++  +E    +      K    +    A   G       LL  GA
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

Query: 96  NPDLRDEDGKTPLDKARERVDEGHRE 121
           + +  + DG T L +A     + + +
Sbjct: 65  DINYANVDGLTALHQA---CIDDNVD 87

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.9 bits (167), Expect = 5e-15
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNKGQRSSSLHYAACFGRPSV 86
           S G  V  ++  G T L+ A     +E+++    R G D+      ++            
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE-----AARKEEERIMLRDA 181

Query: 87  AKVLLRHGANPDLRDEDGKTPL 108
            + L     N     + G T L
Sbjct: 182 RQWLNSGHINDVRHAKSGGTAL 203

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.1 bits (152), Expect = 6e-13
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
               +VN  D  G T L+ A+ +G +E    L E   D+      GQ  ++   A     
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ--TAFDVADEDIL 277

Query: 84  PSVAKVLLRHGANPDLRDED 103
             + ++  +       + E 
Sbjct: 278 GYLEELQKKQNLLHSEKREK 297

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 96.9 bits (242), Expect = 3e-26
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRS--SSLHYAACFGRPSV 86
             +V+ +D+ G+T L + +  G+ + V  L E GAD++ +  R   ++LH AA + RP V
Sbjct: 67  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126

Query: 87  AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            + L+  GA+ ++ DE G T L+ ARE        
Sbjct: 127 VEALVELGADIEVEDERGLTALELARE---ILKTT 158

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 73.4 bits (181), Expect = 3e-17
 Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 7/86 (8%)

Query: 37  DDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAKVLLRHGA 95
              G          G            ADV  + +  +    AA          LL    
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE--TPWWTAARKADEQALSQLL-EDR 68

Query: 96  NPDLRDEDGKTPLDKARERVDEGHRE 121
           + D  DE+G+T L         G  +
Sbjct: 69  DVDAVDENGRTALLFV---AGLGSDK 91

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 16/116 (13%), Positives = 27/116 (23%), Gaps = 29/116 (25%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-------------------- 67
             G ++   D+ G T L  A             + G  +                     
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDE 191

Query: 68  ----KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
               +G+     +            V   H A      +D +  L+ A   V E  
Sbjct: 192 IVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDV--AKDYEDGLEYA---VAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 3/70 (4%)

Query: 17  KDTDALIETIDSG---GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSS 73
           +    ++E          E+      G+ +          +         A+        
Sbjct: 173 EKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED 232

Query: 74  SLHYAACFGR 83
            L YA     
Sbjct: 233 GLEYAVAESV 242

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 94.4 bits (236), Expect = 4e-26
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGR 83
           +    V  + ++  G+T L     FG+  +   L ++GA  N      +S +H AA  G 
Sbjct: 22  LHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
               KVL+ HGA+ ++ D  G  P+  A   V EGH  
Sbjct: 81  LDTLKVLVEHGADVNVPDGTGALPIHLA---VQEGHTA 115

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.8 bits (211), Expect = 2e-22
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVA 87
           G   N  D  G + ++ A+  G  + ++ L E GADVN      +  +H A   G  +V 
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 88  KVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             L    ++   RD  G TPL+ A   +  G ++
Sbjct: 118 SFLA-AESDLHRRDARGLTPLELA---LQRGAQD 147

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 72.1 bits (178), Expect = 2e-17
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 40  GQTLLNWASAFG-TQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGAN 96
               L+ A+A G  QE+   L       +   R   ++L     FG  ++A  LL+ GA+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 97  PDLRDEDGKTPLDKARERVDEGHRE 121
           P+++D  G +P+  A      G  +
Sbjct: 61  PNVQDTSGTSPVHDA---ARTGFLD 82

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 58.2 bits (142), Expect = 5e-12
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
             G +VN  D  G   ++ A   G   +V FL    +D+++   +  + L  A   G   
Sbjct: 89  EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQD 147

Query: 86  VAKVLLRH 93
           +  +L  H
Sbjct: 148 LVDILQGH 155

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 94.4 bits (236), Expect = 5e-26
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
             G +V+  D  G   L+ A ++G  E+ E L + GA VN     + + LH AA  G+  
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           + K+LL+HGA+P  ++ DG TPLD  +    +G  +
Sbjct: 123 ICKLLLQHGADPTKKNRDGNTPLDLVK----DGDTD 154

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 91.3 bits (228), Expect = 8e-25
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACF 81
                V    ++    T L++A+ +    +VE+L + GADV+     G     LH A  +
Sbjct: 28  CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL--VPLHNACSY 85

Query: 82  GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           G   VA++L++HGA  ++ D    TPL +A     +G  E
Sbjct: 86  GHYEVAELLVKHGAVVNVADLWKFTPLHEA---AAKGKYE 122

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 81.7 bits (203), Expect = 5e-21
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 40  GQTLLNWASAFGTQEMVEFLCER-GADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGAN 96
               L  A+  G  E V+ LC     +     G++S+ LH+AA + R SV + LL+HGA+
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67

Query: 97  PDLRDEDGKTPLDKARERVDEGHRE 121
              +D+ G  PL  A      GH E
Sbjct: 68  VHAKDKGGLVPLHNA---CSYGHYE 89

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 60.1 bits (147), Expect = 9e-13
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
             G  VN  D    T L+ A+A G  E+ + L + GAD  K    G   + L      G 
Sbjct: 96  KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN--TPLDLVKD-GD 152

Query: 84  PSVAKVLLRHGA 95
             +  +L    A
Sbjct: 153 TDIQDLLRGDAA 164

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 94.0 bits (235), Expect = 6e-26
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
                +N  D+ G T L WA+A G   +VEFL + GAD       R S+L  A   G   
Sbjct: 24  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           + K+LL  G + +  D +G TPL  A   V   H +
Sbjct: 84  IVKMLLDCGVDVNEYDWNGGTPLLYA---VHGNHVK 116

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 92.5 bits (231), Expect = 3e-25
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
             G +   +    ++ L+ A + G  ++V+ L + G DVN+    G   + L YA     
Sbjct: 57  QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG--TPLLYAVHGNH 114

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
               K+LL  GA+P +  + G   +D A   V  G+R 
Sbjct: 115 VKCVKMLLESGADPTIETDSGYNSMDLA---VALGYRS 149

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 81.3 bits (202), Expect = 6e-21
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANP 97
               ++  +A G    +    E+   +N    +  + L +AA  G+ +V + LL++GA+P
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 98  DLRDEDGKTPLDKARERVDEGHRE 121
            L  +  ++ L  A     +G+ +
Sbjct: 63  QLLGKGRESALSLA---CSKGYTD 83

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 74.3 bits (184), Expect = 4e-18
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
             GV+VN  D  G T L +A      + V+ L E GAD         +S+  A   G  S
Sbjct: 90  DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 149

Query: 86  VAKVLLRHGANPDLRDED 103
           V +V+  H        ++
Sbjct: 150 VQQVIESHLLKLLQNIKE 167

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 96.8 bits (242), Expect = 7e-26
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 14  IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSS 73
           I +  +  L   +     +    D  G +   +A A     +V  L   GA  N  +   
Sbjct: 7   INTWKSKQLKSFL--SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF 64

Query: 74  SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            LH AA      + K+LL  G +    D+ G T L  A   VD G+ +
Sbjct: 65  PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA---VDSGNMQ 109

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.0 bits (214), Expect = 1e-21
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
           + G   N ++   +  L+ A+     ++V+ L   G D ++      ++L+YA   G   
Sbjct: 52  NAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ 109

Query: 86  VAKVLLRHGANPDLRDEDG-KTPLDKARERVDEGHRE 121
             K+ ++         + G KT    A   V      
Sbjct: 110 TVKLFVKKNWRLMFYGKTGWKTSFYHA---VMLNDVS 143

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 81.4 bits (202), Expect = 5e-20
 Identities = 9/84 (10%), Positives = 23/84 (27%), Gaps = 6/84 (7%)

Query: 30  GVEVNFMDDVGQT-LLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAK 88
               N  + +     +  A      EM++ L +   ++      S+           +AK
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-----SANLENVLLDDAEIAK 238

Query: 89  VLLRHGANPDLRDEDGKTPLDKAR 112
           +++                + K  
Sbjct: 239 MIIEKHVEYKSDSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 80.3 bits (199), Expect = 1e-19
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 6/97 (6%)

Query: 28  SGGVEVNFMDDVG-QTLLNWASAFGTQEMVEFLCERGADVNKG-QRSSSLHYAACFGRPS 85
                + F    G +T    A       +V +               S +H     G   
Sbjct: 116 KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD 175

Query: 86  VAKVLLRHGANPDLRDEDGKTP-LDKARERVDEGHRE 121
           +  +LL +  + +  +     P +  A   +D    E
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLA---IDNKDIE 209

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 5/47 (10%), Positives = 11/47 (23%), Gaps = 5/47 (10%)

Query: 75  LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           L     +   S          +    D  G +    A   + + +  
Sbjct: 4   LSRINTWK--SKQLKSFLSSKDTFKADVHGHSASYYA---IADNNVR 45

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 95.6 bits (239), Expect = 1e-25
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGR 83
           +   +VN +DD+G++ L+WA+A    +    L + GA+ +    + +  + L  AA  G 
Sbjct: 145 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE--TPLFLAAREGS 202

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              AKVLL H AN D+ D   + P D A+ER    H +
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQER---MHHD 237

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 94.1 bits (235), Expect = 4e-25
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGR 83
           I +   +++     G T L  A+    + M+E L    ADVN       S+LH+AA    
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              A VLL++GAN D+++   +TPL  A     EG  E
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLA---AREGSYE 204

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.1 bits (204), Expect = 2e-20
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK----GQRSSSLHYAACFG 82
               + N  D++G+T L+ A +   Q + + L    A D++     G   + L  AA   
Sbjct: 78  EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT--TPLILAARLA 135

Query: 83  RPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              + + L+   A+ +  D+ GK+ L  A       + +
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWA---AAVNNVD 171

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 79.0 bits (196), Expect = 3e-19
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 23/109 (21%)

Query: 31  VEVNFMDDVGQTLLNWASAFGTQ-------------EMVEFLCERGADV-----NKGQRS 72
           ++VN     G T L  AS  G                ++     +GA +       G+  
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE-- 58

Query: 73  SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           ++LH AA + R   AK LL   A+ +++D  G+TPL  A   V    + 
Sbjct: 59  TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA---VSADAQG 104

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 66.3 bits (163), Expect = 2e-14
 Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
             G   +  ++  +T L  A+  G+ E  + L +  A+ +            A       
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 237

Query: 86  VAKVLLRHGANP 97
           + ++L     + 
Sbjct: 238 IVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 4/40 (10%), Positives = 11/40 (27%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
                 +  D + +   + A      ++V  L       +
Sbjct: 211 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.3 bits (246), Expect = 1e-25
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
             GV V+    +G T L+ AS +G  ++V+FL +  ADVN       S LH AA  G   
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           +  +LL++GA+P+    DG TPL  A+     G+  
Sbjct: 359 IVTLLLKNGASPNEVSSDGTTPLAIAKR---LGYIS 391

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.4 bits (241), Expect = 6e-25
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVA 87
           G   N     G T L+ A+  G  EMV  L  + A+ N G +S  + LH  A  G   VA
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA 294

Query: 88  KVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            VL++HG   D     G TPL  A      G+ +
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVA---SHYGNIK 325

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.4 bits (241), Expect = 6e-25
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPS 85
           S G+      + G T L+ AS  G   +V+ L +RGA  N    +  + LH AA  G   
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           VAK LL++ A  + + +D +TPL  A      GH  
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCA---ARIGHTN 94

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.9 bits (237), Expect = 2e-24
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
                 N     G T L+ A+  G  E V  L E+ A       +  + LH AA +G+  
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           VA++LL   A+P+   ++G TPL  A   V   + +
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVA---VHHNNLD 193

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.1 bits (235), Expect = 4e-24
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
                 N     G T L+ A      ++V+ L  RG   +    +  + LH AA   +  
Sbjct: 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 226

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           VA+ LL++G + +     G TPL  A     EGH E
Sbjct: 227 VARSLLQYGGSANAESVQGVTPLHLA---AQEGHAE 259

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.9 bits (232), Expect = 9e-24
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
             G   N  +   +T L+ A+  G  E+ ++L +  A VN   +   + LH AA  G  +
Sbjct: 35  QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 94

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           + K+LL + ANP+L    G TPL  A     EGH E
Sbjct: 95  MVKLLLENNANPNLATTAGHTPLHIA---AREGHVE 127

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 78.7 bits (195), Expect = 1e-18
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
               +VN    +G + L+ A+  G  ++V  L + GA  N+     ++ L  A   G  S
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391

Query: 86  VAKVLLR---HGANPDLRDEDGKTPLDKARERVDEG 118
           V  VL       +   + D+   +  +   E +D  
Sbjct: 392 VTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVS 427

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 93.2 bits (233), Expect = 2e-25
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
             G +VN +D  G T L  A+ FG  E+VE L + GADVN    +  + LH AA FG   
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           + +VLL++GA+ + +D+ GKT  D +   +D G+ +
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDIS---IDNGNED 160

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.7 bits (224), Expect = 4e-24
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
           + G +VN  D  G T L+ A+  G  E+VE L + GADVN       + L  AA FG   
Sbjct: 35  ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           + +VLL++GA+ +  D +G TPL  A      GH E
Sbjct: 95  IVEVLLKNGADVNANDMEGHTPLHLA---AMFGHLE 127

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 83.2 bits (207), Expect = 1e-21
 Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 30  GVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSV 86
           G   +          L  A+  G  + V  L   GADVN       + LH AA  G   +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 87  AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            +VLL++GA+ +  D  G TPL  A      GH E
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPLRLA---ALFGHLE 94

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 61.6 bits (151), Expect = 3e-13
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
             G +VN  D  G T L+ A+ FG  E+VE L + GADVN     G+  ++   +   G 
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK--TAFDISIDNGN 158

Query: 84  PSVAKVLLRH 93
             +A++L + 
Sbjct: 159 EDLAEILQKL 168

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.1 bits (230), Expect = 2e-25
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG---QRSSSLHYAACFGRP 84
             G + N ++  G+  +      G+ ++ E L   GA+ N       +  +H AA  G  
Sbjct: 33  EAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFL 91

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
               VL R GA  D+ D  G+ P+D A    ++GHR+
Sbjct: 92  DTLVVLHRAGARLDVCDAWGRLPVDLA---EEQGHRD 125

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 85.2 bits (212), Expect = 8e-23
 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 29  GGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSV 86
           G   ++ +       L  A+A G  E V  L E GAD N   R     +      G   V
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQV 59

Query: 87  AKVLLRHGANPDLRDEDGKT-PLDKARERVDEGHRE 121
           A++LL HGA P+  D    T P+  A     EG  +
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDA---AREGFLD 92

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 64.0 bits (157), Expect = 2e-14
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 30  GVEVNFMDDVGQTL-LNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSV 86
           G E N  D    T  ++ A+  G  + +  L   GA ++         +  A   G   +
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126

Query: 87  AKVLLRHGAN 96
           A+ L     +
Sbjct: 127 ARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 65
             G  ++  D  G+  ++ A   G +++  +L     D
Sbjct: 99  RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 92.5 bits (231), Expect = 2e-25
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN---KGQRSSSLHYAACFGRP 84
             G   N  +  G+  +      G+  + E L   GA+ N       +  +H AA  G  
Sbjct: 33  EAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL 91

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
               VL R GA  D+RD  G+ P+D A    + GHR+
Sbjct: 92  DTLVVLHRAGARLDVRDAWGRLPVDLA---EELGHRD 125

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 76.7 bits (190), Expect = 3e-19
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 37  DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHG 94
            +     L  A+A G  E V  L E GA+ N         +      G   VA++LL HG
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG 67

Query: 95  ANPDLRDEDGKT-PLDKARERVDEGHRE 121
           A P+  D    T P+  A     EG  +
Sbjct: 68  AEPNCADPATLTRPVHDA---AREGFLD 92

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.1 bits (178), Expect = 2e-17
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 30  GVEVNFMDDVGQTL-LNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSV 86
           G E N  D    T  ++ A+  G  + +  L   GA ++         +  A   G   V
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 126

Query: 87  AKVLLRHGANPDLRDEDGKTPLDKARERVD 116
           A+ L          +       +   +  D
Sbjct: 127 ARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.2 bits (147), Expect = 6e-13
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 61  ERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHR 120
           E  A  +    +  L  AA  GR    + LL  GANP+  +  G+ P+         G  
Sbjct: 2   EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM----MGSA 57

Query: 121 E 121
            
Sbjct: 58  R 58

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 51.3 bits (124), Expect = 2e-09
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVA 87
             G  ++  D  G+  ++ A   G +++  +L            S+     A  G   + 
Sbjct: 99  RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG---SNHARIDAAEGPSDIP 155

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 92.4 bits (231), Expect = 2e-25
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
             GV  +    V +T L+ A++ G   +VE L + GADVN     + ++LH+A       
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           V ++L+++GA+   + +  KT  D +   +D G+ +
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDIS---IDNGNED 147

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 89.0 bits (222), Expect = 4e-24
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYAACFGRPSVAKVLLRHGAN 96
               L  A+  G  + V  L   GA       G   S LH AA +G  S  +VLLR G +
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGT--SPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 97  PDLRDEDGKTPLDKARERVDEGHRE 121
            D R +  +TPL  A     EGH  
Sbjct: 60  RDARTKVDRTPLHMA---ASEGHAN 81

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 86.3 bits (215), Expect = 6e-23
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 10/98 (10%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
           + G      D +G + L+ A+ +G     E L   G   +      +  + LH AA  G 
Sbjct: 23  ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGH 79

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            ++ +VLL+HGA+ + +D    T L  A    +  H+E
Sbjct: 80  ANIVEVLLKHGADVNAKDMLKMTALHWA---TEHNHQE 114

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 57.8 bits (141), Expect = 6e-12
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
             G +VN  D +  T L+WA+    QE+VE L + GADV+      +  ++   +   G 
Sbjct: 88  KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCK--TAFDISIDNGN 145

Query: 84  PSVAKVL 90
             +A++L
Sbjct: 146 EDLAEIL 152

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 94.4 bits (236), Expect = 2e-25
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFG-TQEMVEFLCERGADVN---KGQRSSSLHYAACFGR 83
           + G +V+ MD  G T L WA+    + +    L      VN   K  ++++LH+A   G 
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            +V  +LL  GAN D ++  G++ LD A       +  
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLA---KQRKNVW 224

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 92.9 bits (232), Expect = 1e-24
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR---SSSLHYAACFGRP 84
             G +V   D    TLL+WA+     ++V++   +GA V++      S+ LH+A   G  
Sbjct: 30  EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           S+   L+++GA+P L D +G + +  A      GH  
Sbjct: 90  SMVVQLMKYGADPSLIDGEGCSCIHLA---AQFGHTS 123

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 90.6 bits (226), Expect = 7e-24
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 28  SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP 84
           S G  V+ +  D+  T L+WA+  G   MV  L + GAD +   G+  S +H AA FG  
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT 122

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHR 120
           S+   L+  G + D+ D++G TPL  A       H 
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWA---AYRTHS 155

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 84.0 bits (209), Expect = 3e-21
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 33  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVL 90
           +  +DD     +  A+ +G  E    L E G DV +   +  + LH+AA   R  + K  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 91  LRHGANPDLRDED-GKTPLDKARERVDEGHRE 121
           +  GA  D    D   TPL  A     +GH  
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWA---TRQGHLS 90

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.0 bits (157), Expect = 1e-13
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 28  SGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFG 82
           +  V VN  D     T L+WA   G   ++  L E GA+V+     G+  S+L  A    
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE--SALDLAKQRK 221

Query: 83  RPSVAKVLLRHGANPD 98
              +   L        
Sbjct: 222 NVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 68
             G  V+  +  G++ L+ A       M+  L E       
Sbjct: 198 EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 95.3 bits (238), Expect = 3e-25
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ-RSSSLHYAACFGRPSV 86
           + G  ++       T L  A     +  V+ L E GADVN+G+ + S LH         +
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEEL 237

Query: 87  AKVLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
           A +L+  GA+   ++ +GK P++       E  
Sbjct: 238 ACLLMDFGADTQAKNAEGKRPVELV---PPESP 267

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 88.3 bits (220), Expect = 1e-22
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAK 88
           G +VN +     T L  A   G+ + V  L + GA V  +   +S +H AA  G      
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVN 174

Query: 89  VLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            L+ +G N D +     TPL  A    +   R 
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLA---CENQQRA 204

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.8 bits (216), Expect = 4e-22
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
           S  +  + +     + ++ A+  G Q  +  L  +G  VN       S LH A   G  S
Sbjct: 49  SNPLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS 106

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             K+LL+HGA  +    D  TPL  A      G  +
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNA---CVSGSWD 139

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 66.0 bits (162), Expect = 2e-14
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR-SSSLHYAACFGRPSV 86
             G  +  MD   Q  ++ +   G ++           +       S +H AA  G    
Sbjct: 16  PRGSHMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLS 74

Query: 87  AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            + L+  G   ++   D  +PL +A      GH  
Sbjct: 75  LRNLISQGWAVNIITADHVSPLHEA---CLGGHLS 106

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
             G +VN       + L+      ++E+   L + GAD       G+R   +        
Sbjct: 211 ESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP--VELVPPES- 266

Query: 84  PSVAKVLLRHGANPD 98
           P     L R GA+  
Sbjct: 267 PLAQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 47  ASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAKVLL-RHGANPDLRDEDG 104
            S+         L  RG+ +     +   +  +   G      + L  +    D      
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD--AVSD 59

Query: 105 KTPLDKARERVDEGHRE 121
            +P+ +A      GH+ 
Sbjct: 60  WSPMHEA---AIHGHQL 73

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 91.3 bits (228), Expect = 3e-25
 Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 9/98 (9%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
           + G +VN  D+ G T L  A+A G  E+VE L + GADVN     G   + LH AA  G 
Sbjct: 35  ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF--TPLHLAAFIGH 92

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +A+VLL+HGA+ + +D+ GKT  D +   +  G+ +
Sbjct: 93  LEIAEVLLKHGADVNAQDKFGKTAFDIS---IGNGNED 127

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 79.4 bits (197), Expect = 2e-20
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPSVAKVLLRHGA 95
               L  A+  G  + V  L   GADVN     G   + L+ A   G   + +VLL++GA
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGL--TPLYLATAHGHLEIVEVLLKNGA 71

Query: 96  NPDLRDEDGKTPLDKARERVDEGHRE 121
           + +  D  G TPL  A      GH E
Sbjct: 72  DVNAVDAIGFTPLHLA---AFIGHLE 94

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 62.4 bits (153), Expect = 7e-14
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 57  EFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
                 G+D+ K      L  AA  G+    ++L+ +GA+ + +DE G TPL  A     
Sbjct: 5   HHHHHHGSDLGK-----KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA---TA 56

Query: 117 EGHRE 121
            GH E
Sbjct: 57  HGHLE 61

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.5 bits (148), Expect = 4e-13
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
             G +VN +D +G T L+ A+  G  E+ E L + GADVN     G+  ++   +   G 
Sbjct: 68  KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK--TAFDISIGNGN 125

Query: 84  PSVAKVLLRH 93
             +A++L + 
Sbjct: 126 EDLAEILQKL 135

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 93.6 bits (234), Expect = 4e-25
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGR 83
           +   +VN +DD+G++ L+WA+A    +    L + GA+ +    + +  + L  AA  G 
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE--TPLFLAAREGS 170

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              AKVLL H AN D+ D   + P D A    +  H +
Sbjct: 171 YETAKVLLDHFANRDITDHMDRLPRDIA---QERMHHD 205

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 91.7 bits (229), Expect = 2e-24
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACF 81
           I +   +++     G T L  A+    + M+E L    ADVN     G+  S+LH+AA  
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK--SALHWAAAV 135

Query: 82  GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                A VLL++GAN D+++   +TPL  A     EG  E
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLA---AREGSYE 172

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 82.5 bits (205), Expect = 7e-21
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK----GQRSSSLHYAACFG 82
               + N  D++G+T L+ A +   Q + + L    A D++     G   + L  AA   
Sbjct: 46  EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT--TPLILAARLA 103

Query: 83  RPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              + + L+   A+ +  D+ GK+ L  A       + +
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWA---AAVNNVD 139

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 81.7 bits (203), Expect = 2e-20
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 28  SGGVEV-NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFG 82
             G  + N  D  G+T L+ A+ +   +  + L E  AD N     G+  + LH A    
Sbjct: 12  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR--TPLHAAVSAD 69

Query: 83  RPSVAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
              V ++L+R+ A + D R  DG TPL  A          
Sbjct: 70  AQGVFQILIRNRATDLDARMHDGTTPLILA---ARLAVEG 106

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 69.7 bits (172), Expect = 6e-16
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 51  GTQEMVEFLCERGADV-----NKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGK 105
               ++     +GA +       G+  ++LH AA + R   AK LL   A+ +++D  G+
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGE--TALHLAARYSRSDAAKRLLEASADANIQDNMGR 59

Query: 106 TPLDKARERVDEGHRE 121
           TPL  A   V    + 
Sbjct: 60  TPLHAA---VSADAQG 72

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 69.0 bits (170), Expect = 9e-16
 Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
             G   +  ++  +T L  A+  G+ E  + L +  A+ +            A       
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 205

Query: 86  VAKVLLRHGA--NPDL 99
           + ++L  +    +P L
Sbjct: 206 IVRLLDEYNLVRSPQL 221

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 92.5 bits (231), Expect = 5e-25
 Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPS 85
           G  VN  D  G+T L W+  FG  EM  FL E GA+VN     G+  + L  A+ +GR  
Sbjct: 91  GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE--TPLIVASKYGRSE 148

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           + K LL  GA+   RD  G T    A      G +E
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASA---RIFGRQE 181

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 89.8 bits (224), Expect = 6e-24
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 7/98 (7%)

Query: 28  SGGVEV--NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGR 83
           +  ++   N+ D   +T L  A   G +  ++ L E    +     + S++L +A    R
Sbjct: 21  NQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNR 80

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +A+ LL  G+N + +D  GKTPL  +   +  G+ E
Sbjct: 81  LGIAEKLLSKGSNVNTKDFSGKTPLMWS---IIFGYSE 115

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.8 bits (167), Expect = 2e-15
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 34  NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRH 93
           + MD  G+ +          + ++FL       +  +  + L  A   G  +    L+ +
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRN--YRDSYNR--TPLMVACMLGMENAIDKLVEN 57

Query: 94  GANPDLRDEDGKTPLDKARERVDEGHRE 121
               + +D +G T L  A   V      
Sbjct: 58  FDKLEDKDIEGSTALIWA---VKNNRLG 82

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 61.6 bits (151), Expect = 4e-13
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGR 83
             G  VN  +  G+T L  AS +G  E+V+ L E GAD++     G   ++   A  FGR
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL--TAEASARIFGR 179

Query: 84  PSVAKVLLRHGA 95
             V K+      
Sbjct: 180 QEVIKIFTEVRR 191

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 93.2 bits (233), Expect = 7e-25
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
           S G ++N  D+     L+WA+  G  ++ E L     D++       S LH AA   R  
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              + L   ++  L++++G+TPL  A          
Sbjct: 192 CVVLFLSRDSDVTLKNKEGETPLQCA---SLNSQVW 224

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 92.5 bits (231), Expect = 1e-24
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGR 83
           + +G ++VN  DD G T + WA+ +   ++V+ L  +G+D+N    + +  LH+AA  G 
Sbjct: 97  LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +A++LL    +    +  G +PL  A     E   +
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIA---ARENRYD 191

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 88.2 bits (220), Expect = 6e-23
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 31  VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAK 88
           +         ++ L+ A+  G  ++   L + GA+++     + + L  AA        K
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 89  VLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            L++ GA  D +D +G T L  A     +GH E
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLA---AKKGHYE 91

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 86.3 bits (215), Expect = 4e-22
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNKG--QRSSSLHYAACFGRP 84
             G  V+  D  G T L+ A+  G  E+V++L   G  DVN       + + +A  +   
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            + K+LL  G++ ++RD +    L  A      G  +
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWA---AFSGCVD 158

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.4 bits (210), Expect = 2e-21
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
             G  ++   +  +T L  A+     E V++L + GA V+      S+ LH AA  G   
Sbjct: 32  QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE 91

Query: 86  VAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
           V + LL +G  + + +D+ G TP+  A    +  H +
Sbjct: 92  VVQYLLSNGQMDVNCQDDGGWTPMIWA---TEYKHVD 125

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.9 bits (162), Expect = 2e-14
 Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
           +   +++ ++  G + L+ A+     + V     R +DV    +   + L  A+   +  
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224

Query: 86  VAKVLLRHGAN 96
            A  + +   +
Sbjct: 225 SALQMSKALQD 235

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 90.1 bits (225), Expect = 9e-25
 Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 9/98 (9%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
             G +VN  D  G+T L+ A+  G  E+V+ L E GADVN     G+  + LH AA  G 
Sbjct: 23  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGH 80

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             V K+LL  GA+ + +D++G+TPL  A      GH E
Sbjct: 81  LEVVKLLLEAGADVNAKDKNGRTPLHLA---ARNGHLE 115

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 83.9 bits (209), Expect = 2e-22
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANP 97
           G+T L+ A+  G  E+V+ L E GADVN       + LH AA  G   V K+LL  GA+ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 98  DLRDEDGKTPLDKARERVDEGHRE 121
           + +D++G+TPL  A      GH E
Sbjct: 62  NAKDKNGRTPLHLA---ARNGHLE 82

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.4 bits (166), Expect = 6e-16
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
             G +VN  D  G+T L+ A+  G  E+V+ L E GADVN   +   + LH AA  G   
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115

Query: 86  VAKVLLRHGA 95
           V K+LL  GA
Sbjct: 116 VVKLLLEAGA 125

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.9 bits (237), Expect = 1e-24
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
             G +V+  D  G   L+ A ++G  E+ E L + GA VN     + + LH AA   R  
Sbjct: 79  QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVE 138

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           V  +LL HGA+P L +  GK+ +D A        RE
Sbjct: 139 VCSLLLSHGADPTLVNCHGKSAVDMA---PTPELRE 171

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.9 bits (237), Expect = 1e-24
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 10  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 69
           L+E  RS + + L+  +    V  +  D    T L+ A+ +    +V+ L + GADV+  
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87

Query: 70  --QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                  LH A  +G   V ++LL+HGA  +  D    TPL +A     +   E
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA---ASKNRVE 138

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 93.7 bits (234), Expect = 3e-24
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPS 85
           G  VN  +    T L+ A+     +++E L + GA +N     GQ  ++LH AA  G   
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ--TALHRAALAGHLQ 294

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERV 115
             ++LL +G++P +    G T      E V
Sbjct: 295 TCRLLLSYGSDPSIISLQGFTAAQMGNEAV 324

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.1 bits (222), Expect = 1e-22
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 28  SGGVEVNFMDDVGQT-LLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP 84
               +     +  +  LL  A +   ++++  L     + +   G++S+ LH AA + R 
Sbjct: 12  DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRV 71

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            + ++LL+HGA+   +D+ G  PL  A      GH E
Sbjct: 72  RIVQLLLQHGADVHAKDKGGLVPLHNA---CSYGHYE 105

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.5 bits (179), Expect = 2e-16
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 14  IRSKDTD---ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ 70
               +     A+         E    +  G +LL  A      ++ + L     +  + Q
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209

Query: 71  -RSSSLHYAACFGRPS---VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              ++LH A     P    VA++LLR GAN + +++D  TPL  A    +  H +
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA---AERAHND 261

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.3 bits (168), Expect = 5e-15
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
             G ++N +D +GQT L+ A+  G  +    L   G+D +    Q  ++           
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----E 322

Query: 86  VAKVLLRHGANPDLRDEDGKT 106
             + +L         D D + 
Sbjct: 323 AVQQILSESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.8 bits (146), Expect = 5e-12
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 10/79 (12%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKV 89
           G +   ++  G++ ++ A     +E + +  +  +          L  AA     +  K 
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS----------LLQAAREADLAKVKK 196

Query: 90  LLRHGANPDLRDEDGKTPL 108
            L        + +  +T L
Sbjct: 197 TLALEIINFKQPQSHETAL 215

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 92.3 bits (230), Expect = 1e-24
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNKG--QRSSSLHYAACFGRP 84
              V VN +D  G T L WA   G +++VE L  +   ++N+      ++LH AA  G  
Sbjct: 94  DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYA 153

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            + ++LL  GA  DLR+ + K   D A    +     
Sbjct: 154 DIVQLLLAKGARTDLRNIEKKLAFDMA---TNAACAS 187

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.1 bits (201), Expect = 2e-20
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACF 81
                +E+N  + +G T L+ A+  G  ++V+ L  +GA  +      +   +   A   
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK--LAFDMATNA 183

Query: 82  GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
              S+ K      A   L + +     + +     E H
Sbjct: 184 ACASLLKKKQGTDAVRTLSNAEDYLDDEDS---DLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.7 bits (187), Expect = 3e-18
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKV 89
             ++ ++ D+  T     ++ G   ++          +     + LH AA  G  S  + 
Sbjct: 35  EGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESI---DNPLHEAAKRGNLSWLRE 91

Query: 90  LLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            L +    +  D+ G T L  A      GH++
Sbjct: 92  CLDNRVGVNGLDKAGSTALYWA---CHGGHKD 120

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 58.4 bits (142), Expect = 8e-12
 Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 10/84 (11%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANP 97
           GQ  +  A         + L     D+        ++       GR       L      
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYV 66

Query: 98  DLRDEDGKTPLDKARERVDEGHRE 121
             + E    PL +A      G+  
Sbjct: 67  AEQAESIDNPLHEA---AKRGNLS 87

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.8 bits (234), Expect = 1e-24
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 28  SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRP 84
             G ++N  +   G+T L+ A       ++E L + GAD         + L  A     P
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            +A++L  HGA       D  +P   +     +   +
Sbjct: 239 ILARLLRAHGAPEPEDGGDKLSPCSSS---GSDSDSD 272

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.5 bits (228), Expect = 7e-24
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 23  IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSS---SLHYAA 79
               +   +++   +  G T L+ A      EMV  L + GAD+NK + +     LH A 
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200

Query: 80  CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                SV ++LL+ GA+P  R   G+TPL  A   +   +  
Sbjct: 201 EAQAASVLELLLKAGADPTARMYGGRTPLGSA---LLRPNPI 239

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.9 bits (211), Expect = 2e-21
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 33  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV-------NKGQRSSSLHYAACFGRPS 85
             ++ + G T L+ A     +  ++FL    A         + GQ  ++LH AA  G  S
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ--TALHLAAILGEAS 59

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             + L   GA   + +  G T L  A          
Sbjct: 60  TVEKLYAAGAGVLVAERGGHTALHLA---CRVRAHT 92

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.7 bits (182), Expect = 3e-17
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 32  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKV 89
            ++  +D+GQT L+ A+  G    VE L   GA V   +R   ++LH A      + A V
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96

Query: 90  LLRHGANPDLRDEDGKTPLDKA 111
           LL+   +      D      + 
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQD 118

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 70.7 bits (174), Expect = 4e-16
 Identities = 15/108 (13%), Positives = 24/108 (22%), Gaps = 19/108 (17%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG----------------QRSS 73
           G  V   +  G T L+ A           L +      +                   + 
Sbjct: 68  GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127

Query: 74  SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           +   +                   +  + DG TPL  A   V     E
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA---VIHKDAE 172

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 92.5 bits (231), Expect = 1e-24
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
           L+     GG E++  +++ QT L+ A       +V  L   GA      R   ++ H A 
Sbjct: 28  LVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC 87

Query: 80  CFGRPSVAKVLLRHGA----NPDLRDEDGKTPLDKARERVDEGHRE 121
               P+  + LL   A    + + R+ DG T L  A   V+   +E
Sbjct: 88  EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA---VNTECQE 130

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 88.3 bits (220), Expect = 5e-23
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 28  SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRP 84
             G +++ +D   G++ L  A    +  MV+ L + GA+VN    S  S+LH A+  G  
Sbjct: 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL 196

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            + + L+R GA+  L++    TPL  AR R      +
Sbjct: 197 PLVRTLVRSGADSSLKNCHNDTPLMVARSR---RVID 230

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 87.5 bits (218), Expect = 1e-22
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG---QRSSSLHYA 78
           L+++   G +++   +  G T L+ A     QE V+ L ERGAD++        S L +A
Sbjct: 98  LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157

Query: 79  ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                 S+ ++LL+HGAN + +   G + L  A      G   
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSA---SGRGLLP 197

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.0 bits (209), Expect = 3e-21
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 33  VNFMDDVGQTLLNWASAFGTQEMVEFLCER----GADVNKG--QRSSSLHYAACFGRPSV 86
               D+ G T L+ A   G    V  L       G +++     R + LH A     PSV
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 87  AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            ++L+  GA+P   D  G+T    A    +     
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLA---CEHRSPT 93

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.6 bits (174), Expect = 3e-16
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPS 85
           G  VN     G + L+ AS  G   +V  L   GAD +         + L  A       
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND--TPLMVARSRRVID 230

Query: 86  VAKVLLRHGAN 96
           + +      A+
Sbjct: 231 ILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 6/37 (16%), Positives = 13/37 (35%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 64
             G + +  +    T L  A +    +++     R A
Sbjct: 204 RSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 89.4 bits (223), Expect = 1e-24
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
           S G +VN     G T L+ A+  G  E+V+ L  +GADVN   +  ++  H A   G   
Sbjct: 30  SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHE 89

Query: 86  VAKVLLRHGANPDLRDEDGKTPL 108
           + K+L   GA+ + R        
Sbjct: 90  IVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 82.4 bits (205), Expect = 7e-22
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 37  DDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHG 94
              G T L+ A+  G  E V+ L  +GADVN      ++ LH AA  G   + K+LL  G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 95  ANPDLRDEDGKTPLDKARERVDEGHRE 121
           A+ + R +DG TP   A      GH E
Sbjct: 66  ADVNARSKDGNTPEHLA---KKNGHHE 89

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.4 bits (140), Expect = 4e-12
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 63  GADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           G        ++ LH AA  G     K LL  GA+ + R +DG TPL  A      GH E
Sbjct: 1   GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA---AKNGHAE 56

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 90.1 bits (225), Expect = 2e-24
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
              V VN  +  G+T L      G  E+   L  RGA+ +       + +H AA  G   
Sbjct: 26  QNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD 84

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             + LL   A+ ++ D +G  PL  A     EGH  
Sbjct: 85  TLQTLLEFQADVNIEDNEGNLPLHLA---AKEGHLR 117

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.8 bits (219), Expect = 2e-23
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
             G   +  D  G  +++ A+  G  + ++ L E  ADVN     G     LH AA  G 
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN--LPLHLAAKEGH 115

Query: 84  PSVAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
             V + L++H A N   R+  G T  D A      G  E
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLA---RLYGRNE 151

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 83.2 bits (207), Expect = 1e-21
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 36  MDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPSVAKVLL 91
           M +     L  A+A G  E +  L +   +VN     G+  ++L      G P +A+ LL
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGR--TALQVMK-LGNPEIARRLL 57

Query: 92  RHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             GANPDL+D  G   +  A      G  +
Sbjct: 58  LRGANPDLKDRTGFAVIHDA---ARAGFLD 84

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 63.2 bits (155), Expect = 6e-14
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNKGQR--SSSLHYAACFGRP 84
               +VN  D+ G   L+ A+  G   +VEFL +  A +V        ++   A  +GR 
Sbjct: 91  EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150

Query: 85  SVAKVLLRHGA 95
            V  ++  +GA
Sbjct: 151 EVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.5 bits (91), Expect = 9e-05
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 64
           +      V   +  G T  + A  +G  E+V  +   GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 91.5 bits (228), Expect = 4e-24
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
           + G+ V F + +   LL  +S  G  ++V+ +     D +       ++LH A C G   
Sbjct: 26  AHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTE 84

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           + K L++ G N +  D DG TPL  A       + +
Sbjct: 85  IVKFLVQFGVNVNAADSDGWTPLHCA---ASCNNVQ 117

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.4 bits (212), Expect = 8e-22
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK-----GQRSSSLHYAACFG 82
             GV VN  D  G T L+ A++    ++ +FL E GA V        Q ++        G
Sbjct: 91  QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150

Query: 83  RPSVAKVLLRHGANPDLRDEDGKTPL-DKARERVDE 117
               ++ L        + ++     L D   +  DE
Sbjct: 151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 83.4 bits (207), Expect = 5e-21
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 37  DDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAKVLLRHGA 95
           +  GQ  L        ++        G  V       + L  ++  G   + + ++    
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 96  NPDLRDEDGKTPLDKARERVDEGHRE 121
           +P L +++G T L  A   V  GH E
Sbjct: 62  DPSLPNDEGITALHNA---VCAGHTE 84

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 87.5 bits (218), Expect = 6e-23
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 37  DDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHG 94
                 LL  A+   T+++ E L +    V++   + ++ L+ A       +AK L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 95  ANPDLRDEDGKTPLDKARERVDEGHRE 121
           A+ +L++    +P   A     +G  E
Sbjct: 63  ADINLQNSISDSPYLYA---GAQGRTE 86

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 87.1 bits (217), Expect = 8e-23
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPS 85
               +V+ +D  G T LN A      E+ + L +RGAD+N       S   YA   GR  
Sbjct: 27  DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86

Query: 86  VAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
           +   +L+H   + +  +  G   L  A    ++GH +
Sbjct: 87  ILAYMLKHATPDLNKHNRYGGNALIPA---AEKGHID 120

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 86.7 bits (216), Expect = 9e-23
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVNK----GQRSSSLHYAAC 80
           +     ++N  +  G   L  A+  G  + V+ L E G  D++     G   ++L  A  
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY--TALIEAVG 149

Query: 81  FGRPS-----VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
               +     + K+L+ +GA+  ++D  G+T +D A ++   G+ E
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK---GYTE 192

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 61.3 bits (150), Expect = 5e-13
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAF-----GTQEMVEFLCERGADVNKGQRS--SSLHYA 78
           ++ G  +++F +D G T L  A          Q++V+ L E GAD +    S  +++ YA
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185

Query: 79  ACFGRPSVAKVLLRH 93
              G   ++K+L ++
Sbjct: 186 NQKGYTEISKILAQY 200

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 88.7 bits (221), Expect = 9e-23
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 28  SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRP 84
            GG  VNF + + G T L+ A     +++VE L   GAD        ++    AA  G  
Sbjct: 26  EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV 85

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            + K+ L  GA+ +  D  G T   +A      G  +
Sbjct: 86  KLLKLFLSKGADVNECDFYGFTAFMEA---AVYGKVK 119

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.4 bits (215), Expect = 6e-22
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFG----TQEMVEFLCERGADVNKG--QRSSSLHYAA 79
           +D  G +VN  D++G+  L  A         + +   L + GADVN    +  + L  A 
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 80  CFGRPSVAKVLL-RHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                 + + LL +     +  D DGKT L  A   V+   ++
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA---VELKLKK 267

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.0 bits (214), Expect = 9e-22
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVN---KGQRSSSLHYAACFGRPSVAKVLLRHGAN 96
              LL  A      ++V+ L E GA+VN   +    + LH A    R  + ++LLRHGA+
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 97  PDLRDEDGKTPLDKARERVDEGHRE 121
           P LR ++G TP   A      G  +
Sbjct: 65  PVLRKKNGATPFLLA---AIAGSVK 86

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 83.7 bits (208), Expect = 7e-21
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 21  ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNKG--QRSSSLHY 77
           A +        +   +   G T L  A+  G  E+++ L  E GADVN       ++L +
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

Query: 78  AACFGRPS----VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           A      S    +  +LL HGA+ ++R E GKTPL  A   V++ H  
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA---VEKKHLG 233

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.4 bits (202), Expect = 5e-20
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 16/107 (14%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS------------L 75
           S G +VN  D  G T    A+ +G  + ++FL +RGA+VN  +++              L
Sbjct: 93  SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

Query: 76  HYAACFGRPSVAKVLLRH-GANPDLRDEDGKTPLDKARERVDEGHRE 121
             AA  G   V K+LL   GA+ +  D  G+  L  A   +      
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA---LLSSDDS 196

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.1 bits (178), Expect = 2e-16
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNKGQRS--SSLHYAACFGRPSV 86
           G +VN   + G+T L  A       +V+ L E+   ++N       ++L  A       +
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268

Query: 87  AKVLLRHGANPDLRD 101
           A++L + GA+ D  D
Sbjct: 269 AELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.3 bits (124), Expect = 5e-09
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 68
           ++   +E+N  D  G+T L  A     +++ E LC+RGA  + 
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.6 bits (218), Expect = 1e-22
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN---KGQRSSSLHYAACFGRPSV 86
              +   +  G T L+ AS  G   +VE L   GADVN        ++LH A     P +
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166

Query: 87  AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +LL+ GA+ +     G +P      R       
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLTWGR---PSTR 198

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.2 bits (204), Expect = 1e-20
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 37  DDVGQTLLNWASAFG----TQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVL 90
            + G + L+ A        T E++  +    A +N     + + LH A    +P +A+ L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 91  LRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           L  G +P+LRD  G TPL  A    ++G   
Sbjct: 65  LGAGCDPELRDFRGNTPLHLA---CEQGCLA 92

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.8 bits (203), Expect = 2e-20
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
           +I  +      +NF +++ QT L+ A      E+ E L   G D         + LH A 
Sbjct: 27  VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86

Query: 80  CFGRPSVAKVLLRHGANPDL------RDEDGKTPLDKARERVDEGHRE 121
             G  +   VL +    P L       + +G T L  A      G+  
Sbjct: 87  EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA---SIHGYLG 131

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 76.0 bits (188), Expect = 2e-18
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 28  SGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRP 84
           S G +VN  +   G+T L+ A      ++V  L + GADVN+      S           
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST 197

Query: 85  SVAKVLLRHGANPDLRDEDGKTPLDKARE 113
            + + L +          + +       E
Sbjct: 198 RIQQQLGQLTLENLQMLPESEDEESYDTE 226

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.8 bits (206), Expect = 2e-22
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANP 97
           G+T L+ A+  G  E+V+ L E GADVN       + LH AA  G   V K+LL  GA+ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 98  DLRDEDGKTPLDKARERVDEGHRE 121
           + +D++G+TPL  A      GH E
Sbjct: 62  NAKDKNGRTPLHLA---ARNGHLE 82

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.5 bits (169), Expect = 9e-17
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
            G +VN  D  G+T L+ A+  G  E+V+ L E GADVN   +   + LH AA  G   
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82

Query: 86 VAKVLLRHGA 95
          V K+LL  GA
Sbjct: 83 VVKLLLEAGA 92

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 84.8 bits (211), Expect = 1e-21
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVNKG--QRSSSLHYAACFGRP 84
             G  V   D   Q  L+ A++ G+ +++E LC  G + VN    Q  + L +A   G  
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187

Query: 85  SVAKVLL-RHGANPDLRDEDGKTPLDKA 111
             A +L+ ++GA  DL D  G    D A
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 83.7 bits (208), Expect = 2e-21
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS-----LHYAACFG 82
           S    +   D  G+  L+W+ +F   E+  FL  +  +VN             H A   G
Sbjct: 24  SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG 83

Query: 83  RPSVAKVLLRH--GANPDLRDEDGKTPLDKARERVDEGHRE 121
              V K L       + +     G T L  A   V +   E
Sbjct: 84  NLEVVKSLYDRPLKPDLNKITNQGVTCLHLA---VGKKWFE 121

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 83.3 bits (207), Expect = 4e-21
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 28  SGGVEVNFMDDV---GQTLLNWASAFGTQEMVEFLCER--GADVNKG--QRSSSLHYAAC 80
           S    VN  D     G T  + A + G  E+V+ L +R    D+NK   Q  + LH A  
Sbjct: 57  SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116

Query: 81  FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                V++ L+ +GA+  ++D+  + PL +A      G  +
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRA---ASVGSLK 154

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 75.6 bits (187), Expect = 3e-18
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 39  VGQTLLNWASAFG-TQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPSVAKVLLRH 93
           +    L+ A       ++ E L  + + + +    G+    LH++  F    +   LL  
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWSVSFQAHEITSFLLSK 58

Query: 94  GANP---DLRDEDGKTPLDKARERVDEGHRE 121
             N    D  D+ G TP   A      G+ E
Sbjct: 59  MENVNLDDYPDDSGWTPFHIA---CSVGNLE 86

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 86.9 bits (216), Expect = 1e-21
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNK----GQRSSSLHYAACFG 82
            G    +     G+T L++A+      +V++L  E+G++ +K    G+  + +  AA  G
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK--TPIMLAAQEG 324

Query: 83  RPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           R  V   L++ GA+ +  D    T    A+      H  
Sbjct: 325 RIEVVMYLIQQGASVEAVDATDHTARQLAQAN---NHHN 360

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 14/104 (13%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL--------CERGADVNKGQRS--SSLHY 77
              V +       +T+L+W ++  + E  E L           GADVN       + L  
Sbjct: 114 RESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172

Query: 78  AACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           A    R  +   L++ GA+P + ++  ++ L +A          
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQA---AANRDFG 213

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.9 bits (190), Expect = 4e-18
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 13/109 (11%)

Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ-RSSSLHYAAC 80
           L +   +        +      L+   A G+  + E +     ++   +   + LH+ A 
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPRHNRTVLHWIAS 134

Query: 81  FGRPSVAKVLLRH--------GANPDLRDEDGKTPLDKARERVDEGHRE 121
                 ++ L+ H        GA+ +  D D  TPL  A   V    R 
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA---VLARRRR 180

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.4 bits (181), Expect = 9e-17
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 19/110 (17%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL---CERGADVNKGQR--SSSLHYAACFG 82
             G +    +   ++ L+ A+A     M+ ++    +   D+ +  R   ++L   A   
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 246

Query: 83  ---RPSVAKVLLRHGANPDLR--------DEDGKTPLDKARERVDEGHRE 121
              + + AK+L+  GA  D             G+T L  A       +  
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA---AQVSNMP 293

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACF 81
           +   G   +  D+ G+T +  A+  G  E+V +L ++GA V          ++   A   
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH--TARQLAQAN 356

Query: 82  GRPSVAKVLLRHGANPD 98
              ++  +  R     +
Sbjct: 357 NHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 10/100 (10%), Positives = 21/100 (21%), Gaps = 12/100 (12%)

Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACF 81
            +E  +    + +      Q  L  AS  G  +      +  +                 
Sbjct: 20  PMENEEKNR-KNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYP-------NPQGYGN 71

Query: 82  GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           G   +      +   P   + +    L         G   
Sbjct: 72  GNDFLGDFNHTNLQIPTEPEPESPIKLHTEA----AGSYA 107

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.1 bits (214), Expect = 2e-21
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 2/101 (1%)

Query: 14  IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS- 72
           ++  D   +       G  V     V    +  A+    QE+++ L E+  +V +   + 
Sbjct: 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTG 323

Query: 73  -SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
                       P+V ++ L   A    R          ++
Sbjct: 324 AGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.1 bits (214), Expect = 2e-21
 Identities = 12/109 (11%), Positives = 25/109 (22%), Gaps = 18/109 (16%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--------------- 72
             G++VN  D+     L  +       + + L ++                         
Sbjct: 232 EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWL 291

Query: 73  SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             +  AA   +  V ++L             G     K      +    
Sbjct: 292 DFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKR---KKKAAPA 337

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 85.7 bits (213), Expect = 3e-21
 Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 11/100 (11%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACF 81
            D   +     DD     ++ A+  G  + V  L E G         G   ++LH A  F
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC--TALHLACKF 63

Query: 82  GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           G    AK L   G         G+ P+  A   V     +
Sbjct: 64  GCVDTAKYLASVGEVHS--LWHGQKPIHLA---VMANKTD 98

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 85.3 bits (212), Expect = 4e-21
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-----GADVNKGQRS--SSLHYAAC 80
             G      D   +T L  A  F  +E ++ + +         ++   +   S LH+A  
Sbjct: 161 QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220

Query: 81  FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                VA   +  G + ++ D +   PL  +   V      
Sbjct: 221 INWEDVAMRFVEMGIDVNMEDNEHTVPLYLS---VRAAMVL 258

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.8 bits (195), Expect = 1e-18
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 17/126 (13%)

Query: 10  LIECIRSKDTDALIETIDSGGVEV-----NFMDDVGQTLLNWASAFGTQ--EMVEFLCER 62
           L+E  + +         +    EV     +     GQT L+W    G +  EM++ L + 
Sbjct: 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162

Query: 63  GADVNKGQRS--SSLHYAACFGRPSVAKVLL-----RHGANPDLRDEDGKTPLDKARERV 115
           GA      ++  + L  A  F       +++     +     D  ++ G + L  A   +
Sbjct: 163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA---I 219

Query: 116 DEGHRE 121
                +
Sbjct: 220 LINWED 225

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.4 bits (194), Expect = 1e-18
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 9/94 (9%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVA 87
             GV     +  G T L+ A  FG  +  ++L   G   +       +H A    +  + 
Sbjct: 41  ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLV 100

Query: 88  KVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             L+            G+ P        +   RE
Sbjct: 101 VALVEGAKE------RGQMPESLL---NECDERE 125

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.6 bits (192), Expect = 3e-18
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 22  LIET-IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYA 78
           +++T      + +++ +  G + L+WA     +++     E G DVN    + +  L+ +
Sbjct: 192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251

Query: 79  ACFGRPSVAKVLLRHGANP---DLRDEDGKTPLDKARER-------VDEGHRE 121
                  + K LL+             +G T L              D   +E
Sbjct: 252 VRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.5 bits (145), Expect = 8e-12
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 51  GTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
           G   M +F      +  K   +    +H AA  G+    + L+  G +P +++  G T L
Sbjct: 1   GPGSMTDFP---KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL 57

Query: 109 DKARERVDEGHRE 121
             A      G  +
Sbjct: 58  HLA---CKFGCVD 67

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 83.8 bits (208), Expect = 2e-21
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 20/123 (16%)

Query: 16  SKDT-DALIET-IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN---KGQ 70
           + +    L+E   +     +      GQT L+ A       +V  L  RGA V+    G 
Sbjct: 49  NLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS 108

Query: 71  RSSS------------LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEG 118
                           L +AAC G   + ++L+ HGA+   +D  G T L      + + 
Sbjct: 109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL---ILQP 165

Query: 119 HRE 121
           ++ 
Sbjct: 166 NKT 168

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 78.0 bits (193), Expect = 5e-19
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 23/127 (18%)

Query: 15  RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS 74
           +  D  AL + +   G EV+    +G+T L+ A+ +   E    L E   ++     +S 
Sbjct: 12  KENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSE 71

Query: 75  -------LHYAACFGRPSVAKVLLRHGANPDLRDED-------------GKTPLDKARER 114
                  LH A      ++ + LL  GA+   R                G+ PL  A   
Sbjct: 72  LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA--- 128

Query: 115 VDEGHRE 121
              G  E
Sbjct: 129 ACVGSEE 135

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 70.7 bits (174), Expect = 2e-16
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 25/122 (20%)

Query: 14  IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KG 69
           + ++ T              + +   G+  L++A+  G++E+V  L E GAD+      G
Sbjct: 101 VSARATG------SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154

Query: 70  QRSSSLHYAACFGRPSVA----KVLLRHGAN------PDLRDEDGKTPLDKARERVDEGH 119
              + LH        + A     +LL +           + +  G TP   A     EG+
Sbjct: 155 N--TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA---GVEGN 209

Query: 120 RE 121
             
Sbjct: 210 IV 211

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.0 bits (128), Expect = 9e-10
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 75  LHYAACFGR-PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           L  AA      +++K+L   G     R   G+T L  A       + E
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA---ALYDNLE 51

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 83.5 bits (207), Expect = 3e-21
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 28  SGGVEVNFMDDV---GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFG 82
                             LL  A+  G  E+V+   +   D ++   +  ++LH A C  
Sbjct: 6   RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGA 65

Query: 83  RPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             S+   L+  GAN +  D  G TPL  A          
Sbjct: 66  NYSIVDFLITAGANVNSPDSHGWTPLHCA---ASCNDTV 101

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 74.6 bits (184), Expect = 8e-18
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACF--G 82
           + G  VN  D  G T L+ A++     +   L + GA +     S   ++      +  G
Sbjct: 75  TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG 134

Query: 83  RPSVAKVLLRHGANPDLRDEDGKTPL-DKARERVDE 117
               A  L     +  L +      L D + E  DE
Sbjct: 135 YADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE 170

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.9 bits (164), Expect = 6e-15
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 56  VEFLCERGADVNKGQRSS-----SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDK 110
           +  +  +     K +R+       L  AA  G   V +  ++   +P   +E+G T L  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 111 ARERVDEGHRE 121
           A   +   +  
Sbjct: 61  A---ICGANYS 68

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 10/98 (10%), Positives = 18/98 (18%), Gaps = 7/98 (7%)

Query: 28  SGGVEVNFMDDV-GQTLLNWASAF--GTQEMVEFLCERGADVNKGQRS-SSLHYAACFGR 83
             G  +       G T       +  G  +   +L +    +           +      
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF 167

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                           RD   +T    A      G   
Sbjct: 168 GDELSFREGESVTVLRRDGPEETDWWWAAL---HGQEG 202

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 6/91 (6%)

Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA 79
               +      +  M+      L   SA    E + F       V +  G   +   +AA
Sbjct: 138 CATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLRRDGPEETDWWWAA 196

Query: 80  CFGRPS-VAKVLLRHGANPDLRDEDGKTPLD 109
             G+   V +     G  P ++ +  K    
Sbjct: 197 LHGQEGYVPRNYF--GLFPRVKPQRSKVKHH 225

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 78.4 bits (194), Expect = 2e-20
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 47  ASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGK 105
            S+         L  RG+ +         L  AA  G+    ++L+ +GA+   +D++G 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLG--KKLLEAARAGQDDEVRILMANGADVAAKDKNGS 58

Query: 106 TPLDKARERVDEGHRE 121
           TPL  A      GH E
Sbjct: 59  TPLHLA---ARNGHLE 71

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 76.8 bits (190), Expect = 1e-19
 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
             G  +    D     L  A+  G  + V  L   GADV      G   + LH AA  G 
Sbjct: 15  PRGSHMG--SD-LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS--TPLHLAARNGH 69

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
             V K+LL  GA+   +D+ GKT  D +   +D G+ +
Sbjct: 70  LEVVKLLLEAGADVXAQDKFGKTAFDIS---IDNGNED 104

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 81.1 bits (200), Expect = 3e-20
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANP 97
              + N A +    E+ E +    +   +      ++LH+A   G   + + LL+ G   
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66

Query: 98  DLRDEDGKTPLDKA 111
           + +D+ G +PL  A
Sbjct: 67  NDKDDAGWSPLHIA 80

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 80.7 bits (199), Expect = 4e-20
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
           +        D   +T L+WA + G  E+VEFL + G  VN    +  S LH AA  G   
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE 87

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARER 114
           + K LL  GA+ +  +++G TPL  A  +
Sbjct: 88  IVKALLVKGAHVNAVNQNGCTPLHYAASK 116

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 72.2 bits (177), Expect = 8e-17
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 16  SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--S 73
           SK+   +   +  GG   +  D    T ++ A+A G  +MV  L    A  N       +
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174

Query: 74  SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
            LH A    R   AK L+  GA+  + +++ KTPL  A+  + 
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG 217

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.4 bits (175), Expect = 1e-16
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
             GV VN  DD G + L+ A++ G  E+V+ L  +GA VN   ++  + LHYAA   R  
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           +A +LL  GANPD +D    T + +A     +G+ +
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAMHRA---AAKGNLK 153

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.7 bits (173), Expect = 3e-16
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 16  SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--S 73
           S   D +++ +   G  VN ++  G T L++A++    E+   L E GA+ +       +
Sbjct: 82  SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141

Query: 74  SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           ++H AA  G   +  +LL + A+ +++D +G TPL  A    DE   E
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA---CDEERVE 186

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 58.3 bits (141), Expect = 1e-11
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
           ++  +       N  D  G T L+ A      E  +FL  +GA +    +   + L  A 
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

Query: 80  CFGRPSVAKVLLRHGANPDL 99
             G   +    L  G    +
Sbjct: 214 --GGLGLILKRLAEGEEASM 231

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 81.0 bits (200), Expect = 8e-20
 Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 27/133 (20%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             L++   ++ TD+L + +             GQT L+ A       +V  L E GADV 
Sbjct: 74  ALLLD--VARKTDSLKQFV---NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128

Query: 68  KGQRSSS----------------LHYAACFGRPSVAKVLLRHG---ANPDLRDEDGKTPL 108
                                  L  AAC  + ++ K LL++    A+   RD  G T L
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188

Query: 109 DKARERVDEGHRE 121
                 V+     
Sbjct: 189 HAL---VEVADNT 198

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.7 bits (163), Expect = 1e-14
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 20/123 (16%)

Query: 16  SKDTDALIETID---SGGVEVNFMD-DVGQTLLNWASAF---GTQEMVEFLCERGADVNK 68
            ++ ++L+  +        +  F D + G+T L  A      G  + +  L +     + 
Sbjct: 26  CQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85

Query: 69  GQR-------------SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
            ++              ++LH A      ++  +L+ +GA+             K R   
Sbjct: 86  LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145

Query: 116 DEG 118
             G
Sbjct: 146 YFG 148

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.0 bits (130), Expect = 6e-10
 Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 28/109 (25%)

Query: 30  GVEVNFMDDVGQTLLNWASAFG---------TQEMVEFLCERGADVNKGQRSSS------ 74
             +++  D VG T+L+                  M   +   GA ++   +         
Sbjct: 174 PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG 233

Query: 75  ---LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHR 120
              L  AA  G+  V   +L+   +              A       H 
Sbjct: 234 LTPLALAASSGKIGVLAYILQREIH-------EPECRHAA---AHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFG 82
           +          +  G T L  A++ G   ++ ++ +R             H AA   
Sbjct: 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP-----ECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 8/55 (14%)

Query: 75  LHYAACFGRPSVAKVLLR-------HGANPDLRD-EDGKTPLDKARERVDEGHRE 121
           +  A         + LL           + + +D E GKT L KA   +  G  +
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQND 71

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 78.3 bits (193), Expect = 6e-19
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 19/95 (20%)

Query: 33  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN---KGQRSSS-------------LH 76
              +   GQT L+ A     +  VE L E+GADV+   +G+                 L 
Sbjct: 86  FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS 145

Query: 77  YAACFGRPSVAKVLLRHG---ANPDLRDEDGKTPL 108
            AAC  +P +   L  +G   A+   +D  G T L
Sbjct: 146 LAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 20/124 (16%)

Query: 16  SKDTDALIETIDSGGVEVNFMD----DVGQTLLNWA---SAFGTQEMVEFLCERGADVNK 68
               + L+  + +    +   +      G+T L  A    + G  + +  L +       
Sbjct: 18  PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN 77

Query: 69  GQR-------------SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
            +               ++LH A         ++L+  GA+   +               
Sbjct: 78  MREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF 137

Query: 116 DEGH 119
             G 
Sbjct: 138 YFGE 141

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 53.6 bits (129), Expect = 6e-10
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 32/136 (23%)

Query: 10  LIEC---IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG--- 63
           L+E    + ++      +  D GG         G+  L+ A+      +V +L E G   
Sbjct: 112 LVEKGADVHAQARGRFFQPKDEGGYFYF-----GELPLSLAACTNQPHIVHYLTENGHKQ 166

Query: 64  ADVNKGQRS--SSLHYAACFG---------RPSVAKVLLRHGAN-------PDLRDEDGK 105
           AD+ +      + LH                  +  +LL   A          L + DG 
Sbjct: 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL 226

Query: 106 TPLDKARERVDEGHRE 121
           +PL  A      G   
Sbjct: 227 SPLMMA---AKTGKIG 239

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 51.3 bits (123), Expect = 5e-09
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 22/94 (23%)

Query: 33  VNFMDDVGQTLLNWASAFG---------TQEMVEFLCERGADVNKGQRSSS--------- 74
           +   D  G T+L+   A             +M + L  + A +       +         
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228

Query: 75  LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
           L  AA  G+  + + ++R        D       
Sbjct: 229 LMMAAKTGKIGIFQHIIRREIA----DAAAHHHH 258

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 23/95 (24%)

Query: 47  ASAFGTQEMVEFLCERGADVN-KGQRSSS-----LHYAA---CFGRPSVAKVLLRHGANP 97
            S  G + ++ FL      +  +  R  S     L  A      GR     +LL      
Sbjct: 16  GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75

Query: 98  DL-----------RDEDGKTPLDKARERVDEGHRE 121
                            G+T L  A   ++   + 
Sbjct: 76  GNMREFINSPFRDVYYRGQTALHIA---IERRCKH 107

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 8/56 (14%)

Query: 74  SLHYAACFGRP----SVAKVLLRHGAN----PDLRDEDGKTPLDKARERVDEGHRE 121
            L      G P     +   LL H              GKT L KA   +  G  +
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.9 bits (187), Expect = 1e-18
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 18/107 (16%)

Query: 30  GVEVNFMDDVGQTLLNWASAFG------TQEMVEFLCERGADVNK--GQRSSSLHYAACF 81
           G ++      G TL       G      T E+ +   E+GAD+          +      
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 82  GRPSVAK-------VLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
                 +       +  + G    ++D+ G T L+  +         
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC---QKPI 168

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.1 bits (185), Expect = 2e-18
 Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 17/124 (13%)

Query: 10  LIECIRSKDTDALIETIDSGGV--EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           +         +  +E  + G    E     ++   +L   +     ++  FL  +GAD+ 
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69

Query: 68  ----KGQRSSSLHYAACFGRPSV------AKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
               +G   +        G   +       K+ L  GA+     +  K  + K    +  
Sbjct: 70  SRTKEGT--TLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN---IFN 124

Query: 118 GHRE 121
              +
Sbjct: 125 YFVD 128

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.9 bits (169), Expect = 6e-16
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACF-----GRPSVAKVLLRHG 94
               ++ A+  GT E    L E+G +  +    S++ Y          R  ++  L+  G
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 95  ANPDLRDEDGKTPLDKARERVDEGHRE 121
           A+   R ++G T           G  +
Sbjct: 66  ADIKSRTKEGTTLFFPL---FQGGGND 89

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.4 bits (165), Expect = 2e-15
 Identities = 8/87 (9%), Positives = 27/87 (31%), Gaps = 13/87 (14%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVE-------FLCERGADVN----KGQRSSSLH 76
             G ++  +    + ++         +  E          + G  +      G   ++L 
Sbjct: 102 EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL--TALE 159

Query: 77  YAACFGRPSVAKVLLRHGANPDLRDED 103
           +     +P   K++  +    +L++  
Sbjct: 160 FVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 6/42 (14%), Positives = 14/42 (33%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
               G+++   D  G T L +         ++ + +     N
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 76.4 bits (187), Expect = 9e-18
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 6   PKRQLIECIRSKDTDALIETIDSGGVEVNFM--DDVGQTLLNWASAFGTQEMVEFLCERG 63
           P   L        +   +    + G +VN++       T L  A+A  +    EFL + G
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258

Query: 64  ADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
           A+VN+        LH+A   G   +A + L+ GA+   RD +G+ PL  A E 
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 74.3 bits (182), Expect = 4e-17
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 20  DALIETIDSGGVEVNF-MDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSS 74
             + +   +  + +N  +D+ G T L+W ++    E+V+ L + G++       G+  S 
Sbjct: 110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE--SC 167

Query: 75  LHYAA----CFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
           L  A      +   +   +L        L D   +T L
Sbjct: 168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.7 bits (165), Expect = 9e-15
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 18  DTDALIETIDSGGVEVNFMDDVGQTLLNWASA-FGTQEMVEFLCERGADVNK---GQRSS 73
           +   +  ++++     N             S     QE+ +       ++N       ++
Sbjct: 74  EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT 133

Query: 74  SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
            LH+        + K L++HG+N    D  G++ L KA
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 66.2 bits (161), Expect = 3e-14
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 20  DALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV--------NKGQR 71
           D L+  I              +           ++ +    +    +        + G  
Sbjct: 226 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD- 284

Query: 72  SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
            + L+ AA  G  S+   LL +GA+P + ++ G  P+D    
Sbjct: 285 -TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 73.0 bits (179), Expect = 2e-16
 Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 10/123 (8%)

Query: 2   QTCWPKRQLIECIRSKDTDALIETIDSGG-----VEVNFMDDVGQTLLNWASAF---GTQ 53
           +     ++L   I ++D  +++E   +G      +         + +L+ A       + 
Sbjct: 128 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 187

Query: 54  EMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
            +V+F+ + G  ++      +++LHYAA + +P   K+LL+  A     +E G+T LD A
Sbjct: 188 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

Query: 112 RER 114
           R++
Sbjct: 248 RKK 250

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 69.3 bits (169), Expect = 2e-15
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 15/127 (11%)

Query: 6   PKRQLIECIRSKDTDALIETIDSGGVEVNFM------DDVGQTLLNWASAFGTQ---EMV 56
               L E ++++D   L++    G V++          +  +T L+ A     +    +V
Sbjct: 130 KLHSLCEAVKTRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 188

Query: 57  EFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
           +FL +   +++K  G+ S++LHY          K+LLR  A+ ++ +E G+TPLD A+  
Sbjct: 189 DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248

Query: 115 VDEGHRE 121
               H  
Sbjct: 249 ---KHEH 252

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.9 bits (168), Expect = 2e-15
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 40  GQTLLNWASAFGTQ---EMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHG 94
            + +L+ A     Q    +V+F+ + G  ++      +++LHYAA + +P   K+LL+  
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 95  ANPDLRDEDGKTPLDKARER 114
           A     +E G+T LD AR++
Sbjct: 250 ALVGTVNEAGETALDIARKK 269

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.8 bits (158), Expect = 6e-14
 Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 27/125 (21%)

Query: 21  ALIETIDSGGV---EVNFMDDVGQTLLNWASAFGTQEMVEFLCERG---ADVN------- 67
           A +     G             G+  L+ A+     ++V +L E     A +        
Sbjct: 114 ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGN 173

Query: 68  -----------KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
                          +S+L      G   +   L       ++ +  G TPL  A     
Sbjct: 174 TVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA---AK 230

Query: 117 EGHRE 121
           EG  E
Sbjct: 231 EGKIE 235

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.4 bits (144), Expect = 6e-12
 Identities = 17/111 (15%), Positives = 27/111 (24%), Gaps = 16/111 (14%)

Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAF---GTQEMVEFLCERGADVNKGQRSSS---- 74
           L                 G+T L  A      G    +  L +   D    +   +    
Sbjct: 25  LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84

Query: 75  ---------LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
                    LH A         K+L+ +GA+  LR         +      
Sbjct: 85  DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYF 135

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 12/95 (12%)

Query: 14  IRSKDTDALIETIDSGG------VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
           + +    A +E  DS G      + +   +    + L      G  +M   LC       
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215

Query: 68  ----KGQRSSSLHYAACFGRPSVAKVLLRHGANPD 98
               +G   + L  AA  G+  + + +L+   +  
Sbjct: 216 ISNHQGL--TPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 24  ETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAA 79
             +          +  G T L  A+  G  E+   + +R          ++ H+  
Sbjct: 205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA-----AAHHHHH 255

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.9 bits (150), Expect = 1e-12
 Identities = 16/99 (16%), Positives = 25/99 (25%), Gaps = 10/99 (10%)

Query: 28  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS----LHYAACFGR 83
           +    V  +          A+  G   ++  LCE           +        AA  G 
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175

Query: 84  PSVAKVLLRHGANP---DLRDEDGKTPLDKARERVDEGH 119
             V   L           ++ E+       A  R   GH
Sbjct: 176 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR---GH 211

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 54.2 bits (130), Expect = 6e-10
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 8   RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
             L++ IR   +   I+           +      LL  A   G Q     L    + + 
Sbjct: 291 EVLLDDIRFLLSIPGIKA----LAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLA 346

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGAN 96
             +  ++ +     GR  +  V L H  +
Sbjct: 347 LTKA-NNYYINETGGRLDLRAVALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 12/97 (12%)

Query: 20  DALIETIDSGGVEV--NFMDDVGQTLLNWASAFGTQEMVEFLC--------ERGADVNK- 68
           DA   +   G  ++        G  +L        + +++ +         +  A     
Sbjct: 256 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315

Query: 69  -GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDG 104
            G  +  L  A   G      +LL   +   L   + 
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIPSVLALTKANN 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 7/71 (9%), Positives = 19/71 (26%), Gaps = 5/71 (7%)

Query: 51  GTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDK 110
             +++     ++G         +++    C        +LL       +   +       
Sbjct: 77  NAKQLWSDAHKKGIKSEVICFVAAI--TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL 134

Query: 111 ARERVDEGHRE 121
           A    + GH  
Sbjct: 135 A---AENGHLH 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
2rfa_A	232	Transient receptor potential cation channel subfa	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.92
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.92
2rfa_A	232	Transient receptor potential cation channel subfa	99.92
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.91
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.91
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.91
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.91
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.91
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.91
2pnn_A	273	Transient receptor potential cation channel subfa	99.91
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.91
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.91
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.9
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.9
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.9
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.9
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.9
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.9
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.9
2pnn_A	273	Transient receptor potential cation channel subfa	99.9
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.9
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.89
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.89
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.88
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.88
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.86
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.86
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.85
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.85
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.84
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.82
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.77
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.77
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.77
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.75
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.71

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=2.3e-28  Score=140.77  Aligned_cols=109  Identities=36%  Similarity=0.491  Sum_probs=63.3

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..++.+.+.. +.+.|.+++.+|..|+||||+|+..|+.+++++|++.|++++.  ..|+||||+|+..|
T Consensus        36 ~g~t~l~~a~~~~~~~~~~~-ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g  114 (169)
T 4gpm_A           36 DGRTPLHHAAENGHKEVVKL-LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG  114 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHH-HHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            34445555555555533332 2334555555555666666666666666666666666665542  33566666666666


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.+++++|++.|++++.+|..|.|||++|++.
T Consensus       115 ~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~  146 (169)
T 4gpm_A          115 HKEVVKLLISKGADVNTSDSDGRTPLDLAREH  146 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            66666666666666666666666666666655

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=4.2e-28  Score=139.63  Aligned_cols=107  Identities=37%  Similarity=0.569  Sum_probs=98.8

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHH
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPS   85 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~   85 (121)
                      +.|+.|+..|+.+.|+.|| +.|++++.+|..|+||+|+|+..+..++++.|++.|++++.  ..|+||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll-~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            4689999999997776655 56999999999999999999999999999999999998874  45899999999999999


Q ss_pred             HHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         86 VAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        86 ~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      ++++|++.|++++.+|..|.||||+|++.+
T Consensus        85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g  114 (169)
T 4gpm_A           85 VVKLLISKGADVNAKDSDGRTPLHHAAENG  114 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999999999999999999983

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=1.4e-26  Score=128.84  Aligned_cols=110  Identities=36%  Similarity=0.484  Sum_probs=100.0

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..|+.+.+..++ +.+.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..+
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cccHHHHHHHHhCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            4577899999999997776655 55899999999999999999999999999999999998874  45899999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      +.+++++|++.|++++.+|..|.||+++|+..+
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~  124 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG  124 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCC
Confidence            999999999999999999999999999999883

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=7.6e-27  Score=127.93  Aligned_cols=110  Identities=26%  Similarity=0.433  Sum_probs=99.0

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..|+.+.+..++ +.+.+++..|..|+||||+|+..++.+++++|++.|++++.  ..|.||||+|+..
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHH-HcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            46788999999999997776655 56889999999999999999999999999999999998874  4589999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ++.+++++|++.|++++.+|..|.||+++|...
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            999999999999999999999999999998655

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=7.5e-27  Score=130.00  Aligned_cols=112  Identities=23%  Similarity=0.280  Sum_probs=101.1

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCC-CccHHHHH
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQ-RSSSLHYA   78 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~-g~t~l~~a   78 (121)
                      .+..+.++++.|+..++.+.+..++ +.+.+++..|..|.||||+|+. ++.+++++|++.|++++  +.. |.||||+|
T Consensus         8 ~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A   85 (136)
T 1d9s_A            8 LGGSSDAGLATAAARGQVETVRQLL-EAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDA   85 (136)
T ss_dssp             CCCCCSCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHH
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHH-HcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHH
Confidence            3456788999999999997776655 5589999999999999999999 99999999999999887  345 89999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        79 ~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      +..++.+++++|++.|++++.+|..|.|||++|+..+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~  122 (136)
T 1d9s_A           86 AREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG  122 (136)
T ss_dssp             HHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            9999999999999999999999999999999999873

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=6.2e-26  Score=128.44  Aligned_cols=111  Identities=23%  Similarity=0.271  Sum_probs=96.5

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..|+.+.+.. |.+.+.+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+.
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  109 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEV-LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHH-HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHH-HHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            3456788999999998865544 5567889998899999999999999999999999999988774  448899999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .++.+++++|++.|++++.++..|.||+++|+..
T Consensus       110 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  143 (153)
T 1awc_B          110 HNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999999988

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=3e-26  Score=131.09  Aligned_cols=112  Identities=28%  Similarity=0.411  Sum_probs=71.6

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..|+.+.+..++...+.+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            344556666666666666666666555555555566666666666666666666666666665542  336666666666


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .++.+++++|++.|++++.+|..|.||||+|+..
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  118 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK  118 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc
Confidence            6666666666666666666666666666666665

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=8.6e-26  Score=131.31  Aligned_cols=109  Identities=31%  Similarity=0.482  Sum_probs=100.0

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCccHHHHHHHh
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYAACF   81 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~---~~g~t~l~~a~~~   81 (121)
                      .+.++++.|+..|+.+.+..++.  +.+++..|..|.||||+|+..++.+++++|++.|++++.   ..|+||||+|+..
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            45688999999999988877665  889999999999999999999999999999999998863   4589999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      ++.+++++|++.|++++.+|..|.||+++|++.+
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAREIL  154 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc
Confidence            9999999999999999999999999999999874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=5.2e-26  Score=126.65  Aligned_cols=112  Identities=28%  Similarity=0.280  Sum_probs=101.4

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCccHHHHHH
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAA   79 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~--~g~t~l~~a~   79 (121)
                      .+..+.++++.|+..++.+.+..++ +.+.+++..|..|.||||+|+..++.+++++|++.|++++..  .|.||||+|+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            4567889999999999997775554 568999999999999999999999999999999999988744  4889999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        80 ~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..++.+++++|++.|++++.+|..|.||+++|+..
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  119 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE  119 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc
Confidence            99999999999999999999999999999998776

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=2e-25  Score=129.28  Aligned_cols=108  Identities=29%  Similarity=0.370  Sum_probs=74.6

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP   84 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~   84 (121)
                      .++++.|+..|+.+.+..++...+.+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..++.
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   85 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHR   85 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            34567777777776666666666666666677777777777777777777777777766653  3366777777777777


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +++++|++.|++++.+|..|.||||+|+..
T Consensus        86 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~  115 (179)
T 3f6q_A           86 DIVQKLLQYKADINAVNEHGNVPLHYACFW  115 (179)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            777777777777777777777777777665

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=3.2e-25  Score=127.54  Aligned_cols=111  Identities=23%  Similarity=0.238  Sum_probs=95.0

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..++.+.+..++ +.+.+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+.
T Consensus        33 ~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  111 (172)
T 3v30_A           33 DERGFTPLIWASAFGEIETVRFLL-EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVR  111 (172)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHH-HcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            345678899999999886665555 55888888888999999999999999999999999888774  458899999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .++.+++++|++.|++++.++..|.||+++|+..
T Consensus       112 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  145 (172)
T 3v30_A          112 GNHVKCVEALLARGADLTTEADSGYTPMDLAVAL  145 (172)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHh
Confidence            9999999999999999999999999999999887

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=5.2e-25  Score=126.15  Aligned_cols=110  Identities=21%  Similarity=0.267  Sum_probs=82.7

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..++.+.+.. |.+.+.+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  112 (167)
T 3v31_A           34 EEGFTPLMWAAAHGQIAVVEF-LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG  112 (167)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHH-HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHCCCHHHHHH-HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc
Confidence            455677778888877755544 4445777777777788888888888888888888887777663  3477888888888


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ++.+++++|++.|++++.++..|.||+++|+..
T Consensus       113 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  145 (167)
T 3v31_A          113 NHVKCVKMLLESGADPTIETDSGYNSMDLAVAL  145 (167)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            888888888888888888888888888888776

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=7.7e-26  Score=138.59  Aligned_cols=109  Identities=24%  Similarity=0.275  Sum_probs=80.1

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..++.+.+ ++|.+.|.+++.+|..|.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..|
T Consensus       118 ~g~t~l~~a~~~~~~~~~-~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g  196 (269)
T 4b93_B          118 DQAVPLHLACQQGHFQVV-KCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK  196 (269)
T ss_dssp             TCCCHHHHHHHHTCHHHH-HHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             CCCCccccccccChHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcC
Confidence            344555555555555333 334455677777778888888888888888888888888877763  34778888888888


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.+++++|++.|++++.+|..|.||||+|+++
T Consensus       197 ~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          197 HVFVVELLLLHGASVQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTT
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhC
Confidence            88888888888888888888888888887765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=7e-25  Score=125.95  Aligned_cols=107  Identities=36%  Similarity=0.488  Sum_probs=52.5

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP   84 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~   84 (121)
                      .++++.|+..|+.+.++.++ +.+.+++..|..|.||||+|+..++.+++++|++.|.+++.  ..|.||||+|+..++.
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   93 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHL   93 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cchHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            34455555555554443322 23445555555555555555555555555555555544432  2244555555555555


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +++++|++.|++++.+|..|.||||+|+..
T Consensus        94 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  123 (169)
T 2y1l_E           94 EIVEVLLKNGADVNANDMEGHTPLHLAAMF  123 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            555555555555555555555555555444

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=7.6e-25  Score=125.82  Aligned_cols=112  Identities=32%  Similarity=0.418  Sum_probs=101.0

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..++.+.+.. |.+.+.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+.
T Consensus        44 ~~~g~t~L~~A~~~~~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  122 (169)
T 2y1l_E           44 DASGWTPLHLAAFNGHLEIVEV-LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM  122 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHH-HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            3567789999999999966655 5566899999999999999999999999999999999998874  458999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      .++.+++++|++.|++++.+|..|.||+++|++.+
T Consensus       123 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  157 (169)
T 2y1l_E          123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG  157 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhC
Confidence            99999999999999999999999999999999883

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=3.9e-25  Score=125.34  Aligned_cols=106  Identities=25%  Similarity=0.328  Sum_probs=52.0

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHH
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPS   85 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~   85 (121)
                      ++++.|+..|+.+.+..++...+.+++..+..|.||||+ +..++.+++++|++.|++++.  ..|.||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   82 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            445555555555444444444333444444455555555 444555555555555444432  22445555555555555


Q ss_pred             HHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         86 VAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        86 ~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ++++|++.|++++.+|..|.||||+|++.
T Consensus        83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  111 (156)
T 1bd8_A           83 TLKVLVEHGADVNVPDGTGALPIHLAVQE  111 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHh
Confidence            55555555555555555555555555444

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=8.6e-26  Score=128.31  Aligned_cols=109  Identities=25%  Similarity=0.261  Sum_probs=98.5

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCcc-HHHHHHH
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSS-SLHYAAC   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t-~l~~a~~   80 (121)
                      ..+.++|+.|+..|+.+.+..++ +.|.+++..+..|.||||+|+ .++.+++++|++.|++++.  ..|.| |||+|+.
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            45688999999999997776655 568999999999999999985 8999999999999998874  44888 9999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  121 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL  121 (156)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh
Confidence            9999999999999999999999999999999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=5.2e-25  Score=128.70  Aligned_cols=110  Identities=34%  Similarity=0.398  Sum_probs=70.6

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..++.+.+..++ +.+.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..
T Consensus        66 ~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  144 (192)
T 2rfm_A           66 IEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY  144 (192)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH
T ss_pred             ccCccHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            34556666666666664444433 33566666666666677766666666666666666666553  3366677777766


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ++.+++++|++.|++++.+|..|.||+++|+..
T Consensus       145 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A          145 GRSEIVKKLLELGADISARDLTGLTAEASARIF  177 (192)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence            677777777766776666666777777766665

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=3.7e-25  Score=133.85  Aligned_cols=108  Identities=31%  Similarity=0.481  Sum_probs=99.1

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCccHHHHHHHh
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYAACF   81 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~---~~g~t~l~~a~~~   81 (121)
                      .+.++++.|+..|+.+.+..++.  +.+++..|..|.||||+|+..|+.+++++|++.|++++.   ..|+||||+|+..
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            35688999999999987777665  889999999999999999999999999999999998863   4489999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+.+++++|++.|++++.+|..|.||||+|++.
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~  154 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELAREI  154 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH
Confidence            999999999999999999999999999999865

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=1e-24  Score=119.36  Aligned_cols=108  Identities=34%  Similarity=0.479  Sum_probs=98.9

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGR   83 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~   83 (121)
                      +.++++.|+..++.+.+..++. .+.+++..+..|.||||+|+..++.+++++|++.|.+++.  ..|.||||+|+..++
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            5678999999999977766665 5889999999999999999999999999999999988864  458999999999999


Q ss_pred             HHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         84 PSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        84 ~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .+++++|++.|++++.+|..|.||+++|+..
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~  111 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARN  111 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999987

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=4.8e-25  Score=126.30  Aligned_cols=109  Identities=30%  Similarity=0.360  Sum_probs=100.0

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGR   83 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~   83 (121)
                      +.++++.|+..|+.+.+..++.. +.+++..|..|.||||+|+..++.+++++|++.|++++  +..|.||||+|+..++
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            56789999999999888777766 78899999999999999999999999999999998877  4458899999999999


Q ss_pred             HHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        84 ~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      .+++++|++.|++++.++..|.||||+|+..+
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  113 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN  113 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999999873

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=2.9e-25  Score=127.75  Aligned_cols=108  Identities=34%  Similarity=0.415  Sum_probs=98.8

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP   84 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~   84 (121)
                      ..+++.|+..|+.+.+..++......++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..++.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            46799999999999998888776555888899999999999999999999999999998874  4589999999999999


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +++++|++.|++++.++..|.||||+|+..
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  112 (172)
T 3v30_A           83 DIVGLLLERDVDINIYDWNGGTPLLYAVRG  112 (172)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            999999999999999999999999999988

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=5.5e-25  Score=128.62  Aligned_cols=113  Identities=25%  Similarity=0.317  Sum_probs=102.4

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHH
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA   79 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~   79 (121)
                      .+..+.++++.|+..|+.+.+..++.. +.+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            356778999999999999777766654 789999999999999999999999999999999998874  45899999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        80 ~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      ..++.+++++|++.|++++.++..|.||||+|+..+
T Consensus       110 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  145 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG  145 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999999999999999999999999873

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=8.4e-25  Score=125.07  Aligned_cols=108  Identities=31%  Similarity=0.423  Sum_probs=97.6

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..++.+.+.. |.+.+.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..+
T Consensus        41 ~g~t~L~~A~~~~~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  119 (165)
T 3twr_A           41 RQSTPLHFAAGYNRVSVVEY-LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG  119 (165)
T ss_dssp             TCCCHHHHHHHTTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcChHHHHHH-HHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC
Confidence            45688999999999866655 5566899999999999999999999999999999999998874  45899999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARE  113 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~  113 (121)
                      +.+++++|++.|++++.+|..|.||+++|++
T Consensus       120 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A          120 KYEICKLLLQHGADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCChhHhHhc
Confidence            9999999999999999999999999999765

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=7.5e-25  Score=134.21  Aligned_cols=111  Identities=22%  Similarity=0.225  Sum_probs=94.3

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.+||+.|+..|+.+.+ ++|...+.+++..+..|.||+++|+..++.++++.|++.|++++.  ..|+||||+|+.
T Consensus        83 d~~G~TpLh~A~~~g~~~~v-~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLI-PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS  161 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHH-HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHH-HHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            44567888889988888555 445566888888888889999999999999999999998888774  458899999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .|+.+++++|++.|++++.++..|.||||+|+..
T Consensus       162 ~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~  195 (269)
T 4b93_B          162 GGHHELVALLLQHGASINASNNKGNTALHEAVIE  195 (269)
T ss_dssp             TTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             CCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHc
Confidence            9999999999999999999999999999999988

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=1.5e-24  Score=131.55  Aligned_cols=110  Identities=32%  Similarity=0.397  Sum_probs=84.3

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..++.+.+.. |.+.+.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..
T Consensus       122 ~~g~t~L~~A~~~~~~~~v~~-Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  200 (253)
T 1yyh_A          122 HDGTTPLILAARLAVEGMLED-LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE  200 (253)
T ss_dssp             TTCCCHHHHHHHHTCSSHHHH-HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCCcHHHHHHHcChHHHHHH-HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHC
Confidence            456677777887777755544 4455777887788888888888888888888888888877663  3477888888888


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ++.+++++|++.|++++.+|..|.||+++|++.
T Consensus       201 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  233 (253)
T 1yyh_A          201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQER  233 (253)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCccccccCCCCHHHHHHHc
Confidence            888888888888888888888888888888877

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=1.7e-24  Score=122.69  Aligned_cols=110  Identities=28%  Similarity=0.341  Sum_probs=98.3

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.++++. +..|+.+.+.. |.+.|.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+.
T Consensus        33 ~~~g~t~L~~-~~~~~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  110 (156)
T 1bd8_A           33 NRFGKTALQV-MMFGSTAIALE-LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ  110 (156)
T ss_dssp             CTTSCCHHHH-SCTTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             CCCCCcHHHH-HHcCCHHHHHH-HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            4567788888 88898866655 5566999999999999999999999999999999999998874  458999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      .|+.+++++|++. ++++.+|..|.||+++|++.+
T Consensus       111 ~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~  144 (156)
T 1bd8_A          111 EGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             HTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSC
T ss_pred             hChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcC
Confidence            9999999999999 999999999999999999883

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=1.4e-24  Score=125.73  Aligned_cols=111  Identities=26%  Similarity=0.358  Sum_probs=100.2

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..++.+.+.. |.+.+.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+.
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~  114 (179)
T 3f6q_A           36 DDHGFSPLHWACREGRSAVVEM-LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF  114 (179)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHH-HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHH-HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            3466789999999999966654 5566899999999999999999999999999999999998874  458999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .++.+++++|++.|++++.+|..|.||+++|+..
T Consensus       115 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A          115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             TTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHH
T ss_pred             cCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHH
Confidence            9999999999999999999999999999998776

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.92  E-value=1.6e-24  Score=129.54  Aligned_cols=113  Identities=32%  Similarity=0.418  Sum_probs=65.0

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHH
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA   79 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~   79 (121)
                      +.+.+..+++.|+..|+.+.+..++...+..++..+..|.||||+|+..|+.+++++|++.|.+++.  ..|.||||+|+
T Consensus         2 e~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            2 EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA   81 (231)
T ss_dssp             -CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             CCccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Confidence            4455555566666666666665555554444455555566666666666666666666665555442  23556666666


Q ss_pred             HhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        80 ~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..++.+++++|++.|++++.++..|.||||+|+..
T Consensus        82 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  116 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK  116 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            66666666666666666665555666666665554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=3.7e-24  Score=121.14  Aligned_cols=107  Identities=27%  Similarity=0.388  Sum_probs=96.2

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP   84 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~   84 (121)
                      .++++.|+..|+.+.+..++.. +.+++ .+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..++.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            5789999999999888777665 66665 588899999999999999999999999988774  4589999999999999


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      +++++|++.|++++.+|..|.||||+|+..+
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  111 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWATEHN  111 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            9999999999999999999999999999873

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=1.5e-24  Score=123.60  Aligned_cols=107  Identities=25%  Similarity=0.257  Sum_probs=50.9

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGR   83 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~   83 (121)
                      +.++++.|+. ++.+.+. +|.+.+.+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..++
T Consensus        38 g~t~L~~A~~-~~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  115 (162)
T 1ihb_A           38 GRTALQVMKL-GNPEIAR-RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH  115 (162)
T ss_dssp             SCCHHHHCCS-SCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CccHHHHHHc-CcHHHHH-HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            3344444444 4443222 22233444544455555555555555555555555555544432  224455555555555


Q ss_pred             HHHHHHHHHcCCC-CCccCcCCCCHHHHHHhh
Q psy15272         84 PSVAKVLLRHGAN-PDLRDEDGKTPLDKARER  114 (121)
Q Consensus        84 ~~~~~~L~~~~~~-~~~~~~~g~tpl~~a~~~  114 (121)
                      .+++++|++.|++ ++.++..|.||+++|+..
T Consensus       116 ~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~  147 (162)
T 1ihb_A          116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLY  147 (162)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHccCCCCCCcCCCCCcHHHHHHHc
Confidence            5555555555544 345555555555555544

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=1.7e-24  Score=123.31  Aligned_cols=108  Identities=25%  Similarity=0.301  Sum_probs=98.5

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGR   83 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~   83 (121)
                      ..++++.|+..|+.+.+..++ +.+.+++..+..|.||||+|+. ++.+++++|++.|++++.  ..|.||||+|+..++
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HhhHHHHHHHcCCHHHHHHHH-hCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            467899999999997776665 6789999999999999999999 999999999999988874  458999999999999


Q ss_pred             HHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        84 ~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      .+++++|++.|++++.++..|.||||+|++.+
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  114 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG  114 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999999883

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=6.4e-25  Score=130.93  Aligned_cols=108  Identities=31%  Similarity=0.434  Sum_probs=98.4

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHc-CCCCC--CCCCccHHHHHHHhC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVN--KGQRSSSLHYAACFG   82 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~--~~~g~t~l~~a~~~~   82 (121)
                      +.++|+.|+..|+.+.+..++ +.+.+++..|..|+||||+|+..++.+++++|++. |++++  +..|.||||+|+..|
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred             cccccccccccCcHHHHHHHH-hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence            467899999999997776655 56899999999999999999999999999999998 88876  455899999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.+++++|++.|++++.+|..|.||+++|+..
T Consensus       152 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  183 (222)
T 3ehr_A          152 YADIVQLLLAKGARTDLRNIEKKLAFDMATNA  183 (222)
T ss_dssp             CHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH
T ss_pred             CHHHHHHHHHcCCCCccccCCCCCHHHHhcch
Confidence            99999999999999999999999999999876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=6.7e-25  Score=128.00  Aligned_cols=111  Identities=16%  Similarity=0.196  Sum_probs=96.5

Q ss_pred             CchHHHHHHHHhCChH---HHHHHHHhCCCCCccccCCCchHHHHHHHcCC------HHHHHHHHHcCCCCCCC--CCc-
Q psy15272          5 WPKRQLIECIRSKDTD---ALIETIDSGGVEVNFMDDVGQTLLNWASAFGT------QEMVEFLCERGADVNKG--QRS-   72 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~---~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~------~~~~~~l~~~~~~~~~~--~g~-   72 (121)
                      .+.++|+.|+..++.+   .+.++|.+.|++++.+|..|+||||+|+..+.      .++++.|++.|++++.+  .|. 
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~t  116 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI  116 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTB
T ss_pred             CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCc
Confidence            4678999999999864   46777888899999999999999999999886      57899999999998854  488 


Q ss_pred             cHHHHHHHhC-----CHHHHHHHHH-cCCCCCccCcCCCCHHHHHHhhc
Q psy15272         73 SSLHYAACFG-----RPSVAKVLLR-HGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        73 t~l~~a~~~~-----~~~~~~~L~~-~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      ||||+|+..+     ..+++++|++ .|++++.+|..|.||||+|++.+
T Consensus       117 tpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~  165 (186)
T 3t8k_A          117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ  165 (186)
T ss_dssp             CTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred             hHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC
Confidence            9999999844     3568999999 89999999999999999999873

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=3e-24  Score=129.41  Aligned_cols=106  Identities=26%  Similarity=0.269  Sum_probs=95.4

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..|+.+.+..+ .+.+.+++..|..|.||||+|+..|+.+++++|++.|++++.  ..|+||||+|+..|
T Consensus        36 ~~~t~L~~A~~~g~~~~v~~L-l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~  114 (239)
T 1ycs_B           36 LPLALLLDSSLEGEFDLVQRI-IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN  114 (239)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHH-TSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             hhhHHHHHHHHcCCHHHHHHH-HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            457889999999999666555 466889999999999999999999999999999999998874  45899999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCC-CHHHHH
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGK-TPLDKA  111 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~-tpl~~a  111 (121)
                      +.+++++|++.|++++.++..|. ||+++|
T Consensus       115 ~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B          115 NVQVCKFLVESGAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             CHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence            99999999999999999998887 999998

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=1.5e-24  Score=130.20  Aligned_cols=110  Identities=23%  Similarity=0.292  Sum_probs=98.7

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..|+.+.+..++. .|.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~   97 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC   97 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            345678999999999977777664 5889999999999999999999999999999999998874  4589999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccC-cCCCCHHHHH--Hhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRD-EDGKTPLDKA--RER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~-~~g~tpl~~a--~~~  114 (121)
                      |+.+++++|++.|++++.++ ..|.|||++|  +..
T Consensus        98 g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~  133 (229)
T 2vge_A           98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE  133 (229)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTST
T ss_pred             CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhc
Confidence            99999999999999999986 6999999998  655

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.92  E-value=4.8e-24  Score=127.66  Aligned_cols=110  Identities=25%  Similarity=0.289  Sum_probs=76.2

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCC-----ccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC---------
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEV-----NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG---------   69 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~-----~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~---------   69 (121)
                      ..+.++++.|+..|+.+.+..++.. +.++     +..|..|.||||+|+..++.+++++|++.|++++..         
T Consensus        35 ~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  113 (232)
T 2rfa_A           35 AMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR  113 (232)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeec
Confidence            4456667777777777555554443 4443     444556777777777777777777777777666532         


Q ss_pred             ------CCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         70 ------QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        70 ------~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                            .|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus       114 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~  164 (232)
T 2rfa_A          114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ  164 (232)
T ss_dssp             TTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence                  367788888777777888888877887777777888888877776

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.92  E-value=6.6e-24  Score=124.58  Aligned_cols=109  Identities=21%  Similarity=0.317  Sum_probs=52.8

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcC-CCCC--CCCCccHHHHHHHhC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVN--KGQRSSSLHYAACFG   82 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-~~~~--~~~g~t~l~~a~~~~   82 (121)
                      +.++++.|+..++.+.+..++...+.+++..+..|.||||+|+..++.+++++|++.| .+++  +..|.||||+|+..+
T Consensus        72 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  151 (201)
T 3hra_A           72 SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR  151 (201)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhc
Confidence            3444444444444444444443444444444444455555555555555555555444 3333  223445555555444


Q ss_pred             C-----HHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 R-----PSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~-----~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .     .+++++|++.|++++.+|..|.||+++|++.
T Consensus       152 ~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  188 (201)
T 3hra_A          152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK  188 (201)
T ss_dssp             CCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Confidence            4     4555555555555555555555555555544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.92  E-value=3.1e-24  Score=134.72  Aligned_cols=110  Identities=29%  Similarity=0.420  Sum_probs=102.2

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..|+.+.+..++...+.+++..|..|.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..|
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  102 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG  102 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCC
Confidence            4577899999999999999999888999999999999999999999999999999999998864  45899999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.+++++|++.|++++.++..|.||||+|+..
T Consensus       103 ~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~  134 (351)
T 3utm_A          103 HYEVTELLLKHGACVNAMDLWQFTPLHEAASK  134 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            99999999999999999999999999999987

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.92  E-value=4.5e-24  Score=127.80  Aligned_cols=111  Identities=23%  Similarity=0.273  Sum_probs=100.3

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCC-----C--CCCCccHHHH
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV-----N--KGQRSSSLHY   77 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~-----~--~~~g~t~l~~   77 (121)
                      .+.++++.|+..|+.+.+..++...+.+++..|..|+||||+|+..|+.+++++|++.|.++     .  +..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            36789999999999988888887779999999999999999999999999999999998765     2  3458999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCccCc-------------CCCCHHHHHHhhc
Q psy15272         78 AACFGRPSVAKVLLRHGANPDLRDE-------------DGKTPLDKARERV  115 (121)
Q Consensus        78 a~~~~~~~~~~~L~~~~~~~~~~~~-------------~g~tpl~~a~~~~  115 (121)
                      |+..|+.+++++|++.|++++.++.             .|.||||+|+..+
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  132 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG  132 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcC
Confidence            9999999999999999999988776             7999999999883

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.92  E-value=7.5e-24  Score=128.50  Aligned_cols=109  Identities=28%  Similarity=0.338  Sum_probs=59.1

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGR   83 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~   83 (121)
                      +.++++.|+..++.+.+..++.....+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..|+
T Consensus        90 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~  169 (253)
T 1yyh_A           90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN  169 (253)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            344445555555443333333332224444445555555555555555555555555554442  235666666666666


Q ss_pred             HHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         84 PSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        84 ~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .+++++|++.|++++.+|..|.||||+|++.
T Consensus       170 ~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  200 (253)
T 1yyh_A          170 VDAAVVLLKNGANKDMQNNREETPLFLAARE  200 (253)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHC
Confidence            6666666666666666666666666666655

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.92  E-value=8.3e-24  Score=138.95  Aligned_cols=108  Identities=25%  Similarity=0.427  Sum_probs=97.6

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccc------cCCCchHHHHHHH---cCCHHHHHHHHHcCCCCCC--CCCccH
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFM------DDVGQTLLNWASA---FGTQEMVEFLCERGADVNK--GQRSSS   74 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~------~~~~~~~l~~a~~---~~~~~~~~~l~~~~~~~~~--~~g~t~   74 (121)
                      ..+.|+.|+..|+.+.+..++.. |.+++..      +..|.||||+|+.   .|+.+++++|++.|++++.  ..|+||
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp  210 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  210 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred             cHHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence            34679999999999888776654 7898876      7889999999976   8999999999999998884  459999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         75 LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        75 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  250 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK  250 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999999999999987

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.92  E-value=8.7e-24  Score=124.06  Aligned_cols=107  Identities=21%  Similarity=0.306  Sum_probs=50.3

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHH-HcCCCCC--CCCCccHHHHHHHhCC
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC-ERGADVN--KGQRSSSLHYAACFGR   83 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~-~~~~~~~--~~~g~t~l~~a~~~~~   83 (121)
                      .++++.|+..++.+.+.. |.+.|.+++..+..|.||||+|+..++.+++++|+ ..+.+++  +..|.||||+|+..++
T Consensus        40 ~t~L~~A~~~~~~~~v~~-Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  118 (201)
T 3hra_A           40 NTPLNIAVHNNDIEIAKA-LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH  118 (201)
T ss_dssp             CCHHHHHHHHTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHH-HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCC
Confidence            344444554444433322 22334444444444555555555555555555444 2222332  2224455555555555


Q ss_pred             HHHHHHHHHcC-CCCCccCcCCCCHHHHHHhh
Q psy15272         84 PSVAKVLLRHG-ANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        84 ~~~~~~L~~~~-~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .+++++|++.| ++++.++..|.||||+|+..
T Consensus       119 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  150 (201)
T 3hra_A          119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGL  150 (201)
T ss_dssp             HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS
T ss_pred             HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh
Confidence            55555555554 55555555555555555543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=1.8e-23  Score=124.44  Aligned_cols=109  Identities=32%  Similarity=0.405  Sum_probs=70.0

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..++.+.+.. |.+.+.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..+
T Consensus        91 ~g~t~L~~A~~~~~~~~~~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  169 (223)
T 2f8y_A           91 DGTTPLILAARLAVEGMLED-LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG  169 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHH-HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCcHHHHHHHhCcHHHHHH-HHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcC
Confidence            44556666666666644433 3345666666666666677766666666666666666666552  33666777777667


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.+++++|++.|++++.++..|.||+++|++.
T Consensus       170 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  201 (223)
T 2f8y_A          170 SYETAKVLLDHFANRDITDHMDRLPRDIAQER  201 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCccccccCCCHHHHHHHh
Confidence            77777777777776666666677777766665

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.91  E-value=3.1e-24  Score=130.24  Aligned_cols=111  Identities=21%  Similarity=0.261  Sum_probs=98.5

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCC-------------CchHHHHHHHcCCHHHHHHHHH---cCCCCC
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDV-------------GQTLLNWASAFGTQEMVEFLCE---RGADVN   67 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~l~~---~~~~~~   67 (121)
                      ..+.++++.|+..|+.+.+. +|.+.|.+++..+..             |.||||+|+..++.+++++|++   .|++++
T Consensus        88 ~~g~t~L~~A~~~g~~~~v~-~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n  166 (256)
T 2etb_A           88 YQGHSALHIAIEKRSLQCVK-LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE  166 (256)
T ss_dssp             TTTCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT
T ss_pred             ccCCCHHHHHHHcCCHHHHH-HHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC
Confidence            45789999999999996665 455669999988876             9999999999999999999999   898887


Q ss_pred             C--CCCccHHHHHHH--hCCHH-------HHHHHHHcCCCC-------CccCcCCCCHHHHHHhhc
Q psy15272         68 K--GQRSSSLHYAAC--FGRPS-------VAKVLLRHGANP-------DLRDEDGKTPLDKARERV  115 (121)
Q Consensus        68 ~--~~g~t~l~~a~~--~~~~~-------~~~~L~~~~~~~-------~~~~~~g~tpl~~a~~~~  115 (121)
                      .  ..|+||||+|+.  .++.+       ++++|++.|+++       +.+|..|.||||+|+..+
T Consensus       167 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  232 (256)
T 2etb_A          167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG  232 (256)
T ss_dssp             CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhC
Confidence            4  459999999998  77888       999999999999       899999999999999983

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=130.76  Aligned_cols=108  Identities=25%  Similarity=0.444  Sum_probs=98.0

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCcc------ccCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCC--CCCccH
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNF------MDDVGQTLLNWASAF---GTQEMVEFLCERGADVNK--GQRSSS   74 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~--~~g~t~   74 (121)
                      ..++++.|+..++.+.+..++ ..+.+++.      .+..|.||||+|+..   ++.+++++|++.|++++.  ..|.||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            346799999999998888876 66888887      588999999999997   889999999999998874  458999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         75 LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        75 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ||+|+..|+.+++++|++.|++++.+|..|.|||++|+..
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~  269 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK  269 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999999999999987

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.91  E-value=2.1e-23  Score=124.14  Aligned_cols=108  Identities=28%  Similarity=0.346  Sum_probs=51.4

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP   84 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~   84 (121)
                      .++++.|+..++.+.+..++.....+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..++.
T Consensus        59 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  138 (223)
T 2f8y_A           59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV  138 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCH
Confidence            34444444444443333333332224444444444444444444444444444444444432  2245555555555555


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +++++|++.|++++.++..|.||||+|++.
T Consensus       139 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  168 (223)
T 2f8y_A          139 DAAVVLLKNGANKDMQNNREETPLFLAARE  168 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCcCHHHHHHHc
Confidence            555555555555555555555555555544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=2.6e-24  Score=130.81  Aligned_cols=109  Identities=21%  Similarity=0.278  Sum_probs=97.0

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCcccc--------------CCCchHHHHHHHcCCHHHHHHHHH---cCCCCC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMD--------------DVGQTLLNWASAFGTQEMVEFLCE---RGADVN   67 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~   67 (121)
                      .+.++|+.|+..|+.+.+. +|.+.|.+++..+              ..|.||||+|+..++.+++++|++   .|++++
T Consensus        92 ~g~t~L~~A~~~g~~~~v~-~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~  170 (260)
T 3jxi_A           92 RGQTALHIAIERRCKHYVE-LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR  170 (260)
T ss_dssp             ESBCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCc
Confidence            6778999999999996655 5556799999888              589999999999999999999999   888887


Q ss_pred             C--CCCccHHHHHHHhCC---------HHHHHHHHHcCCCC-------CccCcCCCCHHHHHHhh
Q psy15272         68 K--GQRSSSLHYAACFGR---------PSVAKVLLRHGANP-------DLRDEDGKTPLDKARER  114 (121)
Q Consensus        68 ~--~~g~t~l~~a~~~~~---------~~~~~~L~~~~~~~-------~~~~~~g~tpl~~a~~~  114 (121)
                      .  ..|+||||+|+..++         .+++++|++.|+++       +.+|..|.||||+|++.
T Consensus       171 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  235 (260)
T 3jxi_A          171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT  235 (260)
T ss_dssp             CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence            4  459999999998887         68999999999998       78999999999999998

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=1.6e-23  Score=128.84  Aligned_cols=107  Identities=28%  Similarity=0.473  Sum_probs=95.1

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCC------ccccCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCC--CCCccHH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEV------NFMDDVGQTLLNWASAF---GTQEMVEFLCERGADVNK--GQRSSSL   75 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~------~~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~--~~g~t~l   75 (121)
                      -.+++.|+..++.+.+..++.. |.++      +..+..|.||||+|+..   ++.+++++|++.|++++.  ..|.|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            3568999999999888776654 6674      34478899999999999   899999999999998874  4589999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         76 HYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        76 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  248 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL  248 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Confidence            999999999999999999999999999999999999987

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.91  E-value=3.7e-23  Score=123.68  Aligned_cols=84  Identities=30%  Similarity=0.453  Sum_probs=33.7

Q ss_pred             CCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCH
Q psy15272         30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTP  107 (121)
Q Consensus        30 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tp  107 (121)
                      +.+++..+..|.||||+|+..++.+++++|++.|.+++.  ..|.||||+|+..++.+++++|++.|++++.++..|.||
T Consensus        96 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  175 (231)
T 3aji_A           96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTP  175 (231)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCH
Confidence            333333333334444444444444444444433333321  123344444444444444444444444444444444444


Q ss_pred             HHHHHh
Q psy15272        108 LDKARE  113 (121)
Q Consensus       108 l~~a~~  113 (121)
                      ||+|+.
T Consensus       176 L~~A~~  181 (231)
T 3aji_A          176 LHLACD  181 (231)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.91  E-value=2.9e-23  Score=127.54  Aligned_cols=112  Identities=29%  Similarity=0.327  Sum_probs=86.8

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCC-CCccc--------------------------------------cCCCch
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGV-EVNFM--------------------------------------DDVGQT   42 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~-~~~~~--------------------------------------~~~~~~   42 (121)
                      .+..+.++++.|+..|+.+.+..|+.. |. +++..                                      +..|.|
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  185 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLDS-GVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT  185 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-SCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCC
Confidence            355677888999999988766665554 43 44433                                      344778


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHH-cCCCCCccCcCCCCHHHHHHhh
Q psy15272         43 LLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLR-HGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        43 ~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |||+|+..|+.+++++|++.|++++.  ..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..
T Consensus       186 pLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHc
Confidence            88888888888888888888887763  448888888888888888888888 6888888888888888888887

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.91  E-value=3.2e-23  Score=123.67  Aligned_cols=110  Identities=23%  Similarity=0.210  Sum_probs=66.4

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCC--CCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHH
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGG--VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA   79 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~   79 (121)
                      ..+.++++.|+..++.+.+.. |.+.+  .+++..+..|.||||+|+..++.+++++|++.|.+++.  ..|.||||+|+
T Consensus        70 ~~g~t~L~~A~~~~~~~~~~~-Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  148 (228)
T 2dzn_A           70 DSGWTPFHIACSVGNLEVVKS-LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA  148 (228)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHH-HHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHH-HHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            344556666666666544433 33334  55555566666666666666666666666666665542  23566666666


Q ss_pred             HhCCHHHHHHHHHcC-CCCCccCcCCCCHHHHHHhh
Q psy15272         80 CFGRPSVAKVLLRHG-ANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        80 ~~~~~~~~~~L~~~~-~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..|+.+++++|++.| ++++.+|..|.||||+|+..
T Consensus       149 ~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~  184 (228)
T 2dzn_A          149 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  184 (228)
T ss_dssp             HTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             HcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHc
Confidence            666666666666666 66666666666666666655

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.91  E-value=5.4e-24  Score=134.82  Aligned_cols=110  Identities=19%  Similarity=0.270  Sum_probs=99.0

Q ss_pred             CCchHHHHHHHHhC--ChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCC-----CC--CCCCccH
Q psy15272          4 CWPKRQLIECIRSK--DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD-----VN--KGQRSSS   74 (121)
Q Consensus         4 ~~~~~~l~~a~~~~--~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~-----~~--~~~g~t~   74 (121)
                      ..+.++++.|+..|  +.+.+.. |.+.|.+++..|..|.||||+|+..++.+++++|++.|++     ++  +..|.||
T Consensus       136 ~~g~t~L~~A~~~g~~~~~~v~~-Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~  214 (364)
T 3ljn_A          136 CKGQTALHWCVGLGPEYLEMIKI-LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH  214 (364)
T ss_dssp             ESCCCHHHHHHHSCGGGHHHHHH-HHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT
T ss_pred             CCCCCHHHHHHHcCCchHHHHHH-HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH
Confidence            35678999999999  7766655 5555999999999999999999999999999999999887     55  4458999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         75 LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        75 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ||+|+..|+.+++++|++.|++++.+|..|.|||++|++.
T Consensus       215 L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  254 (364)
T 3ljn_A          215 LHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA  254 (364)
T ss_dssp             THHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            9999999999999999999999999999999999999998

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.91  E-value=1.3e-23  Score=128.62  Aligned_cols=112  Identities=21%  Similarity=0.212  Sum_probs=87.0

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccC-CCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDD-VGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA   79 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~   79 (121)
                      +..+.++++.|+..|+.+.+..|+ +.|.+++..+. .|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+
T Consensus       155 ~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~  233 (282)
T 1oy3_D          155 NYDGHTPLHVAVIHKDAEMVRLLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL  233 (282)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHH
Confidence            346778999999999986665554 56899998875 499999999999999999999999998874  45899999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        80 ~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      ..++.+++++|+++|++++.++..|.||+++|....
T Consensus       234 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          234 LRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             TSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             HcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            999999999999999999999999999999998764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.91  E-value=2.7e-23  Score=128.41  Aligned_cols=110  Identities=26%  Similarity=0.339  Sum_probs=79.7

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC---------------
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK---------------   68 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~---------------   68 (121)
                      ..+.++++.|+..|+.+.+.. |.+.|.+++..|..|.||||+|+..|+.+++++|++.|++++.               
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~-Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  149 (299)
T 1s70_B           71 VDGLTALHQACIDDNVDMVKF-LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (299)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             CCCCCHHHHHHHcCCHHHHHH-HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc
Confidence            345677777777777754444 4455777777777777888888877777777777777765431               


Q ss_pred             -----------------------------------------------CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccC
Q psy15272         69 -----------------------------------------------GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRD  101 (121)
Q Consensus        69 -----------------------------------------------~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~  101 (121)
                                                                     ..|.||||+|+..|+.+++++|++.|++++.+|
T Consensus       150 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d  229 (299)
T 1s70_B          150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD  229 (299)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred             chHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcC
Confidence                                                           125577777777888888888888888888888


Q ss_pred             cCCCCHHHHHHhh
Q psy15272        102 EDGKTPLDKARER  114 (121)
Q Consensus       102 ~~g~tpl~~a~~~  114 (121)
                      ..|.||||+|+..
T Consensus       230 ~~g~tpL~~A~~~  242 (299)
T 1s70_B          230 YDGWTPLHAAAHW  242 (299)
T ss_dssp             TTCCCHHHHHHHT
T ss_pred             CCCCcHHHHHHhc
Confidence            8888888888776

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.91  E-value=2.4e-23  Score=124.87  Aligned_cols=109  Identities=25%  Similarity=0.323  Sum_probs=70.9

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..++.+.+. +|.+.|.+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..+
T Consensus       110 ~g~t~L~~A~~~~~~~~~~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  188 (237)
T 3b7b_A          110 GGWTPMIWATEYKHVDLVK-LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN  188 (237)
T ss_dssp             TSCCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHH-HHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhC
Confidence            4455666666666664443 34445666666666666777777777777777777766666553  33667777777777


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.+++++|++.|++++.+|..|.||+++|+..
T Consensus       189 ~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  220 (237)
T 3b7b_A          189 RYDCVVLFLSRDSDVTLKNKEGETPLQCASLN  220 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTT
T ss_pred             CHhHHHHHHHcCCCCCccCCCCCCHHHHHHHH
Confidence            77777777777777777777777777776665

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=2e-23  Score=132.64  Aligned_cols=108  Identities=29%  Similarity=0.448  Sum_probs=97.9

Q ss_pred             chHHHHHHHHh-CChHHHHHHHHhCCCCCcccc--CCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          6 PKRQLIECIRS-KDTDALIETIDSGGVEVNFMD--DVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         6 ~~~~l~~a~~~-~~~~~v~~ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +.++|+.|+.. ++.+.+..++ ..|.+++..+  ..|.||||+|+..++.+++++|++.|++++.  ..|+||||+|+.
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL-~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADAL-AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHH-HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHH-HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            35678899999 9997776655 6689999888  8899999999999999999999999998874  458999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~  311 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMET  311 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC
Confidence            9999999999999999999999999999999988

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.91  E-value=1.4e-23  Score=129.64  Aligned_cols=109  Identities=30%  Similarity=0.456  Sum_probs=99.4

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..|+.+.+..++.. |.+++..|..|.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..|
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            346789999999999888776654 789999999999999999999999999999999998874  45899999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.+++++|++.|++++.++..|.|||++|+..
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  149 (299)
T 1s70_B          118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc
Confidence            99999999999999999999999999998765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.91  E-value=9.5e-24  Score=129.21  Aligned_cols=110  Identities=21%  Similarity=0.275  Sum_probs=97.6

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccC--------------CCchHHHHHHHcCCHHHHHHHHH---cCCCC
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDD--------------VGQTLLNWASAFGTQEMVEFLCE---RGADV   66 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~l~~---~~~~~   66 (121)
                      ..+.++|+.|+..|+.+.+.. |.+.|.+++..+.              .|.||||+|+..++.+++++|++   .|+++
T Consensus        99 ~~g~tpL~~A~~~g~~~~v~~-Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~  177 (273)
T 2pnn_A           99 YKGQTALHIAIERRNMTLVTL-LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI  177 (273)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHH-HHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHH-HHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc
Confidence            467899999999999966655 5566999998886              79999999999999999999999   88888


Q ss_pred             CC--CCCccHHHHHHHhCC---------HHHHHHHHHcCCCCC-------ccCcCCCCHHHHHHhh
Q psy15272         67 NK--GQRSSSLHYAACFGR---------PSVAKVLLRHGANPD-------LRDEDGKTPLDKARER  114 (121)
Q Consensus        67 ~~--~~g~t~l~~a~~~~~---------~~~~~~L~~~~~~~~-------~~~~~g~tpl~~a~~~  114 (121)
                      +.  ..|+||||+|+..++         .+++++|++.|++++       .+|..|.||||+|++.
T Consensus       178 ~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          178 SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence            74  458999999999988         789999999999986       5899999999999998

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.91  E-value=1.9e-23  Score=127.88  Aligned_cols=83  Identities=36%  Similarity=0.424  Sum_probs=76.6

Q ss_pred             CccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC---CCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHH
Q psy15272         33 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG---QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD  109 (121)
Q Consensus        33 ~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~---~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~  109 (121)
                      ++..+..|.||||+|+..++.+++++|++.|++++..   .|.||||+|+..|+.+++++|++.|++++.+|..|.||||
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~  230 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG  230 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHH
Confidence            5667888999999999999999999999999988743   3899999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q psy15272        110 KARERV  115 (121)
Q Consensus       110 ~a~~~~  115 (121)
                      +|+..+
T Consensus       231 ~A~~~~  236 (282)
T 1oy3_D          231 SALLRP  236 (282)
T ss_dssp             HHHTSS
T ss_pred             HHHHcC
Confidence            999873

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.91  E-value=8.4e-24  Score=127.03  Aligned_cols=109  Identities=28%  Similarity=0.309  Sum_probs=50.1

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCC---CCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCccHHHHHH
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGG---VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYAA   79 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~---~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~---~~g~t~l~~a~   79 (121)
                      +.++++.|+..++.+.+..++....   .+++..+..|.||||+|+..++.+++++|++.|.+++.   ..|.||||+|+
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~  158 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  158 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence            3444444555444444433333211   13444444444555555555555555555544444432   22444555555


Q ss_pred             HhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        80 ~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..++.+++++|++.|++++.++..|.||||+|+..
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  193 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR  193 (241)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            44555555555544554444444455555544444

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.91  E-value=5.5e-24  Score=129.14  Aligned_cols=111  Identities=23%  Similarity=0.205  Sum_probs=97.6

Q ss_pred             CchHHHHHHHHhCChHHH---HHHHHhCCCCCcc----ccCCCchHHHHHHHc---CCHHHHHHHHHcCCCCC-------
Q psy15272          5 WPKRQLIECIRSKDTDAL---IETIDSGGVEVNF----MDDVGQTLLNWASAF---GTQEMVEFLCERGADVN-------   67 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v---~~ll~~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~-------   67 (121)
                      ++.++|+.|+..|+.+.+   .+++...+.+++.    .|..|.||||+|+..   ++.+++++|++.|++++       
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            478899999999999854   3445567899998    899999999999999   99999999999886554       


Q ss_pred             ------CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcC-------------CCCHHHHHHhhc
Q psy15272         68 ------KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDED-------------GKTPLDKARERV  115 (121)
Q Consensus        68 ------~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~-------------g~tpl~~a~~~~  115 (121)
                            +..|.||||+|+..|+.+++++|++.|++++.++..             |.||||+|+..+
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~  147 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK  147 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTT
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcC
Confidence                  134899999999999999999999999999999886             999999999883

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=1.4e-23  Score=125.96  Aligned_cols=109  Identities=20%  Similarity=0.276  Sum_probs=64.9

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCC--------CCCCCccHHH
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV--------NKGQRSSSLH   76 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~--------~~~~g~t~l~   76 (121)
                      .+.++++.|+..++.+.+ ++|.+.|.+++..+..|.||||+|+..++.+++++|+..+.++        .+..|.||||
T Consensus        44 ~g~t~L~~A~~~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  122 (236)
T 1ikn_D           44 LQQTPLHLAVITNQPEIA-EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH  122 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHH-HCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHH
Confidence            345566666666665333 3344456666666666666666666666666666666655431        1233566666


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCccCc-CCCCHHHHHHhh
Q psy15272         77 YAACFGRPSVAKVLLRHGANPDLRDE-DGKTPLDKARER  114 (121)
Q Consensus        77 ~a~~~~~~~~~~~L~~~~~~~~~~~~-~g~tpl~~a~~~  114 (121)
                      +|+..|+.+++++|++.|++++.++. .|.||||+|+..
T Consensus       123 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  161 (236)
T 1ikn_D          123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  161 (236)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence            66666666666666666666666665 666666666655

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=3.5e-23  Score=133.75  Aligned_cols=110  Identities=31%  Similarity=0.360  Sum_probs=85.9

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..++.+.+.. |.+.+.+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..
T Consensus       276 ~~g~t~L~~A~~~~~~~~~~~-Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~  354 (437)
T 1n11_A          276 KSGLTPLHLVAQEGHVPVADV-LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ  354 (437)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHH-HHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHH-HHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHC
Confidence            455677788888887755544 4455777887788888888888888888888888888887764  3477888888888


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+.+++++|++.|++++.+|..|.||+++|++.
T Consensus       355 g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~  387 (437)
T 1n11_A          355 GHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL  387 (437)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             ChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            888888888888888888888888888888776

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.90  E-value=7.7e-23  Score=122.70  Aligned_cols=110  Identities=25%  Similarity=0.389  Sum_probs=73.6

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..++.+.+..++...+.+++..+..|.||+|+|+..++.+++++|++.|.+++.  ..|.||||+|+..|
T Consensus        76 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCC
Confidence            4455666667666665554444443356666666677777777777777777777777666553  33667777777777


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.+++++|++.|++++.+|..|.||||+|++.
T Consensus       156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  187 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARE  187 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh
Confidence            77777777777777777777777777777665

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.90  E-value=7.1e-23  Score=126.25  Aligned_cols=108  Identities=26%  Similarity=0.205  Sum_probs=56.5

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCccHHHHHHHhCCH
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRP   84 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~-~~~g~t~l~~a~~~~~~   84 (121)
                      +.++++.|+..|+.+.+.. |.+.+.+++..|..|.||||+|+..++.+++++|++.|.+++ ...|.||||+|+..|+.
T Consensus        92 g~t~L~~A~~~g~~~~v~~-Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~  170 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKI-LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHV  170 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHH-HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCH
T ss_pred             CCCHHHHHHHCCcHHHHHH-HHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            3444555555555433322 223345555555555555555555555555555555554443 22255555555555555


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +++++|++.|++++.++..|.||||+|+..
T Consensus       171 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~  200 (285)
T 3d9h_A          171 ECVNSLIAYGGNIDHKISHLGTPLYLACEN  200 (285)
T ss_dssp             HHHHHHHHTTCCTTCCBTTTBCHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            555666555666666666666666666555

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.90  E-value=1.3e-22  Score=121.90  Aligned_cols=112  Identities=22%  Similarity=0.269  Sum_probs=68.3

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHH---hCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETID---SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHY   77 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~---~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~   77 (121)
                      +..+.++++.|+..|+.+.+..++.   +.+.+++..|..|.||||+|+..++.+++++|++.|.+++  +..|.||||+
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~   85 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   85 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            3455666666666666666555554   3556666666666666666666666666666666666554  2335566666


Q ss_pred             HHHhCCHHHHHHHHHcCC----CCCccCcCCCCHHHHHHhh
Q psy15272         78 AACFGRPSVAKVLLRHGA----NPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        78 a~~~~~~~~~~~L~~~~~----~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+..++.+++++|++.++    +++.++..|.||||+|+..
T Consensus        86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~  126 (241)
T 1k1a_A           86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT  126 (241)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHc
Confidence            666666666666666654    5555566666666666554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.90  E-value=3.9e-23  Score=123.27  Aligned_cols=111  Identities=27%  Similarity=0.291  Sum_probs=99.2

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcC-CCCC--CCCCccHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVN--KGQRSSSLHYAA   79 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-~~~~--~~~g~t~l~~a~   79 (121)
                      +..+.++++.|+..++.+.+.. |.+.|.+++..|..|.||||+|+..++.+++++|++.| .+++  +..|.||||+|+
T Consensus       104 ~~~g~t~L~~A~~~~~~~~~~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~  182 (228)
T 2dzn_A          104 TNQGVTCLHLAVGKKWFEVSQF-LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL  182 (228)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHH-HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHH
T ss_pred             CcCCCCHHHHHHHcCCHhHHHH-HHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHH
Confidence            3457789999999999866655 55669999999999999999999999999999999999 7766  456999999999


Q ss_pred             HhCCHHHHHHHH-HcCCCCCccCcCCCCHHHHHHhh
Q psy15272         80 CFGRPSVAKVLL-RHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        80 ~~~~~~~~~~L~-~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ..++.+++++|+ +.|++++.+|..|.||+++|+..
T Consensus       183 ~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          183 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             HcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            999999999999 88999999999999999998765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.90  E-value=7.3e-23  Score=124.39  Aligned_cols=111  Identities=25%  Similarity=0.259  Sum_probs=95.2

Q ss_pred             CCchHHHHHHH---HhCChHHHHHHHHhC----------CCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC-
Q psy15272          4 CWPKRQLIECI---RSKDTDALIETIDSG----------GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG-   69 (121)
Q Consensus         4 ~~~~~~l~~a~---~~~~~~~v~~ll~~~----------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-   69 (121)
                      ..+.++++.|+   ..|+.+.+..|+...          ....+..|..|.||||+|+..|+.+++++|++.|++++.. 
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  123 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA  123 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence            45788999999   678887776666541          1334455668999999999999999999999999988744 


Q ss_pred             ---------------CCccHHHHHHHhCCHHHHHHHHH---cCCCCCccCcCCCCHHHHHHhh
Q psy15272         70 ---------------QRSSSLHYAACFGRPSVAKVLLR---HGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        70 ---------------~g~t~l~~a~~~~~~~~~~~L~~---~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                                     .|.||||+|+..|+.+++++|++   .|++++.+|..|.||||+|++.
T Consensus       124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~  186 (260)
T 3jxi_A          124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI  186 (260)
T ss_dssp             EECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred             cccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHh
Confidence                           48999999999999999999999   9999999999999999999975

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.90  E-value=2e-23  Score=128.73  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=91.6

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..|+.+.+..|+ +.|.+++..  +|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+.
T Consensus        28 d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~  104 (285)
T 3kea_A           28 DVHGHSASYYAIADNNVRLVCTLL-NAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD  104 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHH-HTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Confidence            456778899999999986665544 557787766  488999999999999999999999988763  458899999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCC-CCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDG-KTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g-~tpl~~a~~~  114 (121)
                      .|+.+++++|++.|++++.++..| .||||+|+..
T Consensus       105 ~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~  139 (285)
T 3kea_A          105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML  139 (285)
T ss_dssp             TTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT
T ss_pred             cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Confidence            999999999999999999999988 7999999887

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.90  E-value=2e-22  Score=123.30  Aligned_cols=111  Identities=27%  Similarity=0.270  Sum_probs=95.2

Q ss_pred             CCCchHHHHHHHHh---CChHHHHHHHHhCCCC-----------CccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy15272          3 TCWPKRQLIECIRS---KDTDALIETIDSGGVE-----------VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK   68 (121)
Q Consensus         3 ~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~-----------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~   68 (121)
                      +..+.++|+.|+..   |+.+.+..|+.. +.+           ....|..|.||||+|+..++.+++++|++.|++++.
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            45778899999976   888777666654 432           223567899999999999999999999999998874


Q ss_pred             C----------------CCccHHHHHHHhCCHHHHHHHHH---cCCCCCccCcCCCCHHHHHHhh
Q psy15272         69 G----------------QRSSSLHYAACFGRPSVAKVLLR---HGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        69 ~----------------~g~t~l~~a~~~~~~~~~~~L~~---~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .                .|.||||+|+..|+.+++++|++   .|++++.+|..|.||||+|+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~  194 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV  194 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc
Confidence            3                48899999999999999999999   9999999999999999999986

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=3.7e-23  Score=124.16  Aligned_cols=111  Identities=23%  Similarity=0.262  Sum_probs=97.7

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCC------CccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC---CCcc
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVE------VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG---QRSS   73 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~---~g~t   73 (121)
                      +..+.++++.|+..++.+.+..++ ..+.+      ++..+..|.||||+|+..++.+++++|++.|++++..   .|.|
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  153 (236)
T 1ikn_D           75 DFRGNTPLHLACEQGCLASVGVLT-QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT  153 (236)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHH-HSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHH-hcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            456788999999999997766655 44543      4567788999999999999999999999999988743   6899


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        74 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |||+|+..++.+++++|++.|++++.+|..|.||+++|+..
T Consensus       154 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  194 (236)
T 1ikn_D          154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR  194 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHcc
Confidence            99999999999999999999999999999999999999887

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=9.9e-23  Score=131.62  Aligned_cols=110  Identities=26%  Similarity=0.310  Sum_probs=93.0

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++|+.|+..|+.+.|+.|+ +.|.+++..+..|.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI   90 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHH-HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence            45678899999999997666655 45888888888899999999999999999999999888763  4588999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+.+++++|++.|++++.++..|.||||+|+..
T Consensus        91 g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~  123 (437)
T 1n11_A           91 GHTNMVKLLLENNANPNLATTAGHTPLHIAARE  123 (437)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence            999999999999999999999999999999887

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=2.1e-23  Score=112.91  Aligned_cols=106  Identities=25%  Similarity=0.291  Sum_probs=93.1

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHH
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA   79 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~   79 (121)
                      .+..+.++++.|+..++.+.+.. |.+.+.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~-Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKK-LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHH-HTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHH-HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            45678899999999999966655 5566899999999999999999999999999999999998874  45899999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCccCcCCCCHH
Q psy15272         80 CFGRPSVAKVLLRHGANPDLRDEDGKTPL  108 (121)
Q Consensus        80 ~~~~~~~~~~L~~~~~~~~~~~~~g~tpl  108 (121)
                      ..++.+++++|++.|++++.++..|.+|-
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999999884

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.90  E-value=2.4e-22  Score=123.84  Aligned_cols=111  Identities=25%  Similarity=0.243  Sum_probs=98.2

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.++|+.|+..|+.+.+..|+ +.+.+++..|..|.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+.
T Consensus        56 ~~~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~  134 (285)
T 3d9h_A           56 AVSDWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV  134 (285)
T ss_dssp             SCCSCCHHHHHHHTTCHHHHHHHH-HTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred             CccCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            345678999999999997776655 56899999999999999999999999999999999998874  458999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      .|+.+++++|++.|++++..+ .|.||||+|+..+
T Consensus       135 ~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g  168 (285)
T 3d9h_A          135 SGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG  168 (285)
T ss_dssp             HTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHT
T ss_pred             cCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcC
Confidence            999999999999999998755 5999999999883

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=3.7e-22  Score=122.10  Aligned_cols=112  Identities=25%  Similarity=0.257  Sum_probs=102.5

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCC----HHHHHHHHHcCCCCCC--CCCccHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGT----QEMVEFLCERGADVNK--GQRSSSLH   76 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~--~~g~t~l~   76 (121)
                      +..+.++++.|+..++.+.+..++...+.+++..+..|.||+|+|+..+.    .+++++|++.|++++.  ..|.||||
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~  224 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  224 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            34567899999999999888887777799999999999999999999999    8999999999998874  45899999


Q ss_pred             HHHHhCCHHHHHHHHH-cCCCCCccCcCCCCHHHHHHhh
Q psy15272         77 YAACFGRPSVAKVLLR-HGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        77 ~a~~~~~~~~~~~L~~-~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +|+..++.+++++|++ .|++++.+|..|.|||++|++.
T Consensus       225 ~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~  263 (285)
T 1wdy_A          225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHc
Confidence            9999999999999999 7999999999999999999988

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=2.9e-22  Score=122.59  Aligned_cols=109  Identities=28%  Similarity=0.361  Sum_probs=98.1

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccc-cCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFM-DDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      +.++++.|+..|+.+.+..++ +.+.+++.. +..|.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..|
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHH-HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            567899999999997776655 557888876 78899999999999999999999999998774  45899999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      +.+++++|++.|++++.++..|.|||++|+..+
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  116 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG  116 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhC
Confidence            999999999999999999999999999999873

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=4.3e-22  Score=104.08  Aligned_cols=90  Identities=34%  Similarity=0.415  Sum_probs=74.7

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGR   83 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~   83 (121)
                      +.++++.|+..++.+.+.. |.+.+.+++.+|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..++
T Consensus         2 g~t~L~~A~~~~~~~~v~~-Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKL-LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHH-HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            4578889999998865554 5566888998899999999999999999999999999888764  448899999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy15272         84 PSVAKVLLRHGAN   96 (121)
Q Consensus        84 ~~~~~~L~~~~~~   96 (121)
                      .+++++|++.|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999988864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.89  E-value=4.2e-23  Score=127.28  Aligned_cols=110  Identities=13%  Similarity=0.079  Sum_probs=77.5

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCC-chHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVG-QTLLNWASAFGTQEMVEFLCERGADVNKG-QRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..|+.+.+..|+ +.|.+++..+..| .||||+|+..++.+++++|++.|.+..+. .|.||||+|+..
T Consensus        93 ~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~  171 (285)
T 3kea_A           93 DKGNTALYYAVDSGNMQTVKLFV-KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKN  171 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHH-HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHH-hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHc
Confidence            44566677777777765544433 3366777667666 57777777777777777777777665443 567778888777


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCH-HHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTP-LDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tp-l~~a~~~  114 (121)
                      |+.+++++|++.|++++.++..|.|| ||+|+..
T Consensus       172 g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~  205 (285)
T 3kea_A          172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN  205 (285)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHc
Confidence            88888888888888888888888776 8887776

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.89  E-value=8.3e-22  Score=118.03  Aligned_cols=110  Identities=25%  Similarity=0.384  Sum_probs=79.4

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCccHHHHHHH
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYAAC   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~---~~g~t~l~~a~~   80 (121)
                      ..+.++++.|+..|+.+.++.++ +.+.+++..+..|.||||+|+..++.+++++|++.|.++..   ..|.||||+|+.
T Consensus         7 ~~~~~~l~~A~~~g~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~   85 (240)
T 3eu9_A            7 DYSTWDIVKATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR   85 (240)
T ss_dssp             CGGGCCHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred             cccchHHHHHHHcCChHHHHHHH-HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence            45566677777777776655544 44677777777777888888887778887777777766542   236677777777


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .++.+++++|++.|++++.++..|.|||++|+..
T Consensus        86 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  119 (240)
T 3eu9_A           86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF  119 (240)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            7777777777777777777777777777777766

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=2.3e-22  Score=105.14  Aligned_cols=77  Identities=40%  Similarity=0.546  Sum_probs=70.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         39 VGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        39 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      +|+||||+|+..++.+++++|++.|++++.  ..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            478999999999999999999999998874  45899999999999999999999999999999999999999999883

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=4.1e-22  Score=126.88  Aligned_cols=112  Identities=19%  Similarity=0.247  Sum_probs=92.3

Q ss_pred             CCCchHHHHHHHHhCC--hHHHHHHHHhCCCCCcc--------ccCCCchHHHHHHHcCCHHHHHHHHHcC-CCCC--CC
Q psy15272          3 TCWPKRQLIECIRSKD--TDALIETIDSGGVEVNF--------MDDVGQTLLNWASAFGTQEMVEFLCERG-ADVN--KG   69 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~--~~~v~~ll~~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~l~~~~-~~~~--~~   69 (121)
                      +..+.++++.|+..+.  ...+.++|.+.+.+++.        .|..|.||||+|+..++.+++++|++.+ .+++  +.
T Consensus       232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~  311 (373)
T 2fo1_E          232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE  311 (373)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT
T ss_pred             CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCC
Confidence            3566788888888873  33555666666888775        5667899999999999999999999765 7766  44


Q ss_pred             CCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         70 QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        70 ~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .|.||||+|+..|+.+++++|++.|++++.+|..|.|||++|+..
T Consensus       312 ~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~  356 (373)
T 2fo1_E          312 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN  356 (373)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHc
Confidence            588999999999999999999999999999999999999999888

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=7.4e-23  Score=123.34  Aligned_cols=108  Identities=26%  Similarity=0.288  Sum_probs=71.3

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhC
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFG   82 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~   82 (121)
                      .+.++++.|+..++.+.+.. +...|.+++. +..+.||||.|+..|+.++++.|++.|++++  +..|.||||+|+..|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~-ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSE-RIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHHH-HhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            46788999999998866655 4466888875 4678999999999999999999999998877  445899999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.+++++|++.|++++.+|..|.||||+|+..
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~  113 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASC  113 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            99999999999999999999999999999987

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.88  E-value=5e-23  Score=129.09  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=76.3

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCC---HH------------------------
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGT---QE------------------------   54 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~---~~------------------------   54 (121)
                      .+..+.++|+.|+..|+.+.|. +|.+.|++++.+|..|+||||+|+..++   .+                        
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~-~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL  205 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVK-HLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  205 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHH-HHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHH-HHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHH
Confidence            3567788899999999885554 4556688888888888888888887655   23                        


Q ss_pred             --------------HHHHHHHc-----------------------------------------------CCCCCCCCCcc
Q psy15272         55 --------------MVEFLCER-----------------------------------------------GADVNKGQRSS   73 (121)
Q Consensus        55 --------------~~~~l~~~-----------------------------------------------~~~~~~~~g~t   73 (121)
                                    +++.|++.                                               +++..+..|+|
T Consensus       206 h~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~T  285 (327)
T 1sw6_A          206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT  285 (327)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCC
T ss_pred             HHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCC
Confidence                          33333322                                               12222344677


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        74 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |||+|+..|+.+++++|++.|++++.+|..|.||||+|++.
T Consensus       286 pLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          286 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            77777777777777777777777777777777777777654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.88  E-value=2e-22  Score=127.60  Aligned_cols=111  Identities=20%  Similarity=0.245  Sum_probs=100.9

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCccHHHHHHHhCC
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGR   83 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~g~t~l~~a~~~~~   83 (121)
                      ..+.++|+.|+..|+.+.|..|+ +.|.+++..|..|.||||+|+..|+.+++++|++.|.+++...|.||||+|+..|+
T Consensus        18 ~~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~   96 (364)
T 3ljn_A           18 DENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANK   96 (364)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCC
Confidence            45678899999999997776655 55899999999999999999999999999999999998888789999999999999


Q ss_pred             HHHHHHHHHc----CCCCCc-----------------cCcCCCCHHHHHHhhc
Q psy15272         84 PSVAKVLLRH----GANPDL-----------------RDEDGKTPLDKARERV  115 (121)
Q Consensus        84 ~~~~~~L~~~----~~~~~~-----------------~~~~g~tpl~~a~~~~  115 (121)
                      .+++++|++.    |++++.                 ++..|.||||+|+..+
T Consensus        97 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  149 (364)
T 3ljn_A           97 TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLG  149 (364)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSC
T ss_pred             HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcC
Confidence            9999999999    888777                 8999999999999883

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=1.2e-22  Score=118.55  Aligned_cols=104  Identities=14%  Similarity=0.160  Sum_probs=90.5

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCCCcccc-CCCchHHHHHHHcCCH----HHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLLNWASAFGTQ----EMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      ++++.|+..|+.+.+..++...   ++..+ ..|+||||+|+..++.    +++++|++.|++++.  ..|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            5689999999999998877663   44455 7799999999999875    489999999999884  458999999999


Q ss_pred             hCC------HHHHHHHHHcCCCCCccCcCCC-CHHHHHHhh
Q psy15272         81 FGR------PSVAKVLLRHGANPDLRDEDGK-TPLDKARER  114 (121)
Q Consensus        81 ~~~------~~~~~~L~~~~~~~~~~~~~g~-tpl~~a~~~  114 (121)
                      .++      .+++++|++.|++++.+|..|. ||||+|+..
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~  125 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY  125 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGC
T ss_pred             cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHc
Confidence            887      5789999999999999999999 999999873

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.88  E-value=1.5e-21  Score=122.52  Aligned_cols=110  Identities=24%  Similarity=0.257  Sum_probs=98.2

Q ss_pred             CCchHHHHHHHHhCC--hHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHH
Q psy15272          4 CWPKRQLIECIRSKD--TDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA   79 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~--~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~   79 (121)
                      ..+.++++.|+..++  ...+.++|.+.+.+++..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+
T Consensus       209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~  288 (351)
T 3utm_A          209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA  288 (351)
T ss_dssp             TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            455688899998843  34677778888999999999999999999999999999999999998874  45899999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHh
Q psy15272         80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE  113 (121)
Q Consensus        80 ~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~  113 (121)
                      ..|+.+++++|++.|++++.+|..|.||+++|..
T Consensus       289 ~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~  322 (351)
T 3utm_A          289 LAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE  322 (351)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCH
T ss_pred             HcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhhH
Confidence            9999999999999999999999999999998754

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.87  E-value=3.8e-21  Score=120.71  Aligned_cols=110  Identities=25%  Similarity=0.273  Sum_probs=91.7

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCC----HHHHHHHHHcCCCCCC--CCCccHHHHH
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGT----QEMVEFLCERGADVNK--GQRSSSLHYA   78 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~~--~~g~t~l~~a   78 (121)
                      .+.++|+.|+..|+.+.|+.||.+.|.+++..|..|.++++.++..+.    ..+++.|++.|++++.  ..|.||||+|
T Consensus       167 ~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a  246 (337)
T 4g8k_A          167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA  246 (337)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            456789999999999888887778889999889999999887776543    3477888899888774  4488999999


Q ss_pred             HHhCCHHHHHHHHHc-CCCCCccCcCCCCHHHHHHhh
Q psy15272         79 ACFGRPSVAKVLLRH-GANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        79 ~~~~~~~~~~~L~~~-~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +..++.++++.|+.. |++++.+|..|.||||+|++.
T Consensus       247 ~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~  283 (337)
T 4g8k_A          247 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  283 (337)
T ss_dssp             HHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence            999999999988876 789999999999999999887

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=4.2e-22  Score=124.89  Aligned_cols=102  Identities=19%  Similarity=0.178  Sum_probs=85.5

Q ss_pred             HHHHhCChHHHHHHHHhCCCCCcc-ccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCC---HH
Q psy15272         12 ECIRSKDTDALIETIDSGGVEVNF-MDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGR---PS   85 (121)
Q Consensus        12 ~a~~~~~~~~v~~ll~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~---~~   85 (121)
                      .++..+..+.+.++|...|.+++. .|..|+||||+|+..|+.+++++|++.|++++.  ..|+||||+|+..|+   .+
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~  181 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG  181 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHH
Confidence            444445566888888899999999 899999999999999999999999999998874  458999999999887   56


Q ss_pred             HHHHHHHcC-CCCCccCcCCCCHHHHHHh
Q psy15272         86 VAKVLLRHG-ANPDLRDEDGKTPLDKARE  113 (121)
Q Consensus        86 ~~~~L~~~~-~~~~~~~~~g~tpl~~a~~  113 (121)
                      +++.|++.+ ++++.+|..|.||||+|++
T Consensus       182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~  210 (327)
T 1sw6_A          182 TFEALLDYLYPCLILEDSMNRTILHHIII  210 (327)
T ss_dssp             CHHHHHHHHGGGGGEECTTCCCHHHHHHH
T ss_pred             HHHHHHHhhhccccCCCCCCCCHHHHHHH
Confidence            677777775 6788888888999998876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=5.7e-22  Score=112.48  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=78.1

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCch-HHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQT-LLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA   79 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~   79 (121)
                      +..+.++++.| ..++.+.+ ++|.+.|.+++..|..|.| |||+|+..++.+++++|++.|++++.  ..|.||||+|+
T Consensus        42 ~~~g~t~L~~A-~~~~~~~v-~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  119 (156)
T 1bi7_B           42 NSYGRRPIQVM-MMGSARVA-ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE  119 (156)
T ss_dssp             CSSSCCTTTSS-CTTCHHHH-HHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHH-HcCCHHHH-HHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            34567778777 47777554 5566779999999999999 99999999999999999999998874  45899999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCccCcCCCCHHHHH
Q psy15272         80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA  111 (121)
Q Consensus        80 ~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a  111 (121)
                      ..++.+++++|++.|++++.++..|.||..-+
T Consensus       120 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          120 ELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCHHHHHHHSSCC-----------------
T ss_pred             HhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999999999999997743

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=6e-22  Score=123.09  Aligned_cols=105  Identities=16%  Similarity=0.144  Sum_probs=87.5

Q ss_pred             CCCchHHHHHHHHh---CChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHH
Q psy15272          3 TCWPKRQLIECIRS---KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHY   77 (121)
Q Consensus         3 ~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~   77 (121)
                      +..+.++|+.|+..   ++.+ +.++|.+.|.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.|||++
T Consensus       187 ~~~g~t~Lh~A~~~~~~~~~~-iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~  265 (301)
T 2b0o_E          187 QAPEELVLHLAVKVANQASLP-LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI  265 (301)
T ss_dssp             CSCEECHHHHHHHTCCTTTHH-HHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHH
T ss_pred             CCCCccHHHHHHHhcccCcHH-HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            45677899999987   6675 45556666999999999999999999999999999999999998874  458999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         78 AACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        78 a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+..++.+++++|++.|++      .|.||||+|++.
T Consensus       266 A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~  296 (301)
T 2b0o_E          266 ARKKHHKECEELLEQAQAG------TFAFPLHVDYSW  296 (301)
T ss_dssp             HHHHTCHHHHHHHHHHHHH------TTSSCCC-----
T ss_pred             HHHcCCHHHHHHHHHhcCC------CCCChhHHHHhc
Confidence            9999999999999998875      578999999988

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=3e-21  Score=107.28  Aligned_cols=84  Identities=32%  Similarity=0.451  Sum_probs=76.1

Q ss_pred             CCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCH
Q psy15272         30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTP  107 (121)
Q Consensus        30 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tp  107 (121)
                      |.++ .+|..|.||||+|+..++.+++++|++.|.+++.  ..|.||||+|+..++.+++++|++.|++++.++..|.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            4566 6789999999999999999999999999988874  458999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q psy15272        108 LDKARER  114 (121)
Q Consensus       108 l~~a~~~  114 (121)
                      ||+|+..
T Consensus        80 L~~A~~~   86 (137)
T 3c5r_A           80 LHDAAKN   86 (137)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999987

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.86  E-value=1.2e-21  Score=124.69  Aligned_cols=112  Identities=22%  Similarity=0.181  Sum_probs=101.2

Q ss_pred             CCchHHHHHHHHhCChHHHHHHH-------HhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccH
Q psy15272          4 CWPKRQLIECIRSKDTDALIETI-------DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSS   74 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll-------~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~   74 (121)
                      ..+.++|+.|+..|+.+.+..++       .+.|.+++..|..|.||||+|+..|+.+++++|++.|++++.  ..|.||
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            46789999999999987666555       378999999999999999999999999999999999998874  458999


Q ss_pred             HHHHHHhCCHHHHHHHHHcC---CCCCccCcCCCCHHHHHHhhc
Q psy15272         75 LHYAACFGRPSVAKVLLRHG---ANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        75 l~~a~~~~~~~~~~~L~~~~---~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      ||+|+..|+.+++++|++.+   ++++.++..|.||||+|+..+
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~  246 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE  246 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhC
Confidence            99999999999999999997   899999999999999998863

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.86  E-value=5.1e-20  Score=110.24  Aligned_cols=110  Identities=33%  Similarity=0.396  Sum_probs=87.2

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccc-cCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFM-DDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      ..+.++++.|+..|+.+.+..++ +.+.+++.. +..|.||||+|+..++.+++++|++.|.+++.  ..|.||||+|+.
T Consensus        40 ~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  118 (240)
T 3eu9_A           40 KENVTLLHWAAINNRIDLVKYYI-SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ  118 (240)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHH-HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            45667888888888886665544 456666543 45588899999999999999998888887763  447889999998


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .++.+++++|++.|++++.++..|.||+++|+..
T Consensus       119 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~  152 (240)
T 3eu9_A          119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR  152 (240)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Confidence            8888999999988888888888888998888865

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.85  E-value=6.7e-21  Score=102.42  Aligned_cols=83  Identities=33%  Similarity=0.334  Sum_probs=70.6

Q ss_pred             CccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHH
Q psy15272         33 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDK  110 (121)
Q Consensus        33 ~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~  110 (121)
                      +...+..|.++||+|+..++.+++++|++.|++++.  ..|.||||+|+..++.+++++|++.|++++.+|..|.|||++
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            345678889999999999999999999999988764  458899999999999999999999999999999999999999


Q ss_pred             HHhhc
Q psy15272        111 ARERV  115 (121)
Q Consensus       111 a~~~~  115 (121)
                      |+..+
T Consensus        97 A~~~~  101 (110)
T 2zgd_A           97 SIDNG  101 (110)
T ss_dssp             HHHHT
T ss_pred             HHHcC
Confidence            99873

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.85  E-value=3.6e-20  Score=116.26  Aligned_cols=108  Identities=28%  Similarity=0.374  Sum_probs=96.5

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccC-CCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDD-VGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFG   82 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~   82 (121)
                      +.++|+.|+.+|+.+.|+.|| +.|++++.++. .|+||||+|+..|+.+++++|++.|++++.  ..+.++++.+...+
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL-~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CChHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            466799999999997776665 55899998775 589999999999999999999999998874  44789999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ....+..++..+++++.++..|.||+++|+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~  135 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  135 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHc
Confidence            99999999999999999999999999999987

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.84  E-value=6.3e-21  Score=105.95  Aligned_cols=85  Identities=28%  Similarity=0.340  Sum_probs=78.7

Q ss_pred             CCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcC-CCC
Q psy15272         30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDED-GKT  106 (121)
Q Consensus        30 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~-g~t  106 (121)
                      +.+++..+..|.||||+|+..++.+++++|++.|.+++.  ..|.||||+|+. ++.+++++|++.|++++.++.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            457888899999999999999999999999999988874  458999999999 9999999999999999999999 999


Q ss_pred             HHHHHHhhc
Q psy15272        107 PLDKARERV  115 (121)
Q Consensus       107 pl~~a~~~~  115 (121)
                      |||+|+..+
T Consensus        81 ~L~~A~~~~   89 (136)
T 1d9s_A           81 PVHDAAREG   89 (136)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            999999883

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.83  E-value=1.4e-21  Score=117.27  Aligned_cols=95  Identities=17%  Similarity=0.097  Sum_probs=82.8

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCccHHHHH-
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYA-   78 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~---~~g~t~l~~a-   78 (121)
                      +..+.++++.|+..|+.+.+.. |.+.|.+++..|..|.||||+|+..++.+++++|++.|++++.   ..|.||||+| 
T Consensus        51 d~~g~tpLh~A~~~g~~~~v~~-Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  129 (229)
T 2vge_A           51 NEEGITALHNAICGANYSIVDF-LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD  129 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHH-HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHH-HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHH
Confidence            4567889999999999966654 5566999999999999999999999999999999999998874   4689999999 


Q ss_pred             -HHhCCHHHHHHHHHcCCCCC
Q psy15272         79 -ACFGRPSVAKVLLRHGANPD   98 (121)
Q Consensus        79 -~~~~~~~~~~~L~~~~~~~~   98 (121)
                       +..++.+++++|++.|++++
T Consensus       130 a~~~~~~~~v~~Ll~~ga~~~  150 (229)
T 2vge_A          130 PYREGYADCATYLADVEQSMG  150 (229)
T ss_dssp             TTSTTHHHHHHHHHHHHHHTT
T ss_pred             HHhcChHHHHHHHHHcCCCcc
Confidence             99999999999998765543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=2e-20  Score=101.10  Aligned_cols=81  Identities=36%  Similarity=0.472  Sum_probs=75.4

Q ss_pred             cccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHH
Q psy15272         35 FMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR  112 (121)
Q Consensus        35 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~  112 (121)
                      .+|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..++.+++++|++.|++++.+|..|.|||++|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            5688999999999999999999999999988774  45899999999999999999999999999999999999999999


Q ss_pred             hhc
Q psy15272        113 ERV  115 (121)
Q Consensus       113 ~~~  115 (121)
                      ..+
T Consensus        84 ~~~   86 (115)
T 2l6b_A           84 KNG   86 (115)
T ss_dssp             TTT
T ss_pred             HCC
Confidence            873

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.82  E-value=3.2e-19  Score=99.04  Aligned_cols=91  Identities=23%  Similarity=0.300  Sum_probs=80.0

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..++.+.+.. |.+.+.+++..|..|.||||+|+..++.+++++|++.|++++  +..|.||||+|+.
T Consensus        44 ~~~g~t~L~~A~~~~~~~~v~~-Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~  122 (136)
T 2jab_A           44 DEYGLTPLYLATAHGHLEIVEV-LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG  122 (136)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHH-HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHH-HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHH
Confidence            4567889999999999966655 556699999999999999999999999999999999999886  4458999999999


Q ss_pred             hCCHHHHHHHHHcC
Q psy15272         81 FGRPSVAKVLLRHG   94 (121)
Q Consensus        81 ~~~~~~~~~L~~~~   94 (121)
                      .++.+++++|++.|
T Consensus       123 ~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          123 NGNEDLAEILQKLN  136 (136)
T ss_dssp             TTCHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHcC
Confidence            99999999999875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=9.9e-20  Score=99.46  Aligned_cols=79  Identities=29%  Similarity=0.369  Sum_probs=71.4

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         37 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        37 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +..+.+|||+|+..++.++++.|++.|.+++.  ..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            46688999999999999999999999988774  4589999999999999999999999999999999999999999987


Q ss_pred             c
Q psy15272        115 V  115 (121)
Q Consensus       115 ~  115 (121)
                      +
T Consensus        84 ~   84 (123)
T 3aaa_C           84 G   84 (123)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=115.48  Aligned_cols=104  Identities=25%  Similarity=0.300  Sum_probs=85.3

Q ss_pred             HHHHHhCChHHHHHHHHhCCC--CCccccCCCchHHHHHHHcCCHHHHHHHHHcCC-CCC--------------------
Q psy15272         11 IECIRSKDTDALIETIDSGGV--EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVN--------------------   67 (121)
Q Consensus        11 ~~a~~~~~~~~v~~ll~~~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~-~~~--------------------   67 (121)
                      +.|+..+..+.+..++.. +.  .++..|..|.||||+|+..|+.+++++|++.|. +++                    
T Consensus        81 ~~a~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~  159 (276)
T 4hbd_A           81 HPELVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKT  159 (276)
T ss_dssp             CHHHHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCS
T ss_pred             CHHHHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhh
Confidence            445566666666555543 22  267889999999999999999999999999886 332                    


Q ss_pred             --------------------CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         68 --------------------KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        68 --------------------~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                                          +..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..+
T Consensus       160 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g  227 (276)
T 4hbd_A          160 QDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHG  227 (276)
T ss_dssp             HHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence                                123779999999999999999999999999999999999999999883

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.82  E-value=7.7e-19  Score=95.83  Aligned_cols=93  Identities=33%  Similarity=0.379  Sum_probs=82.2

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..++.+.+.. |.+.+.+++..|..|.||+|+|+..++.+++++|++.|++++.  ..|.||+++|+.
T Consensus        32 ~~~g~t~L~~A~~~~~~~~~~~-Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~  110 (126)
T 1n0r_A           32 DKNGRTPLHLAARNGHLEVVKL-LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR  110 (126)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCcHHHHHH-HHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            3466789999999999966654 5566899999999999999999999999999999999998874  458999999999


Q ss_pred             hCCHHHHHHHHHcCCC
Q psy15272         81 FGRPSVAKVLLRHGAN   96 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~   96 (121)
                      .++.+++++|++.|++
T Consensus       111 ~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          111 NGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHHTCC
T ss_pred             cCcHHHHHHHHHcCCC
Confidence            9999999999999875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=2.2e-21  Score=123.64  Aligned_cols=107  Identities=14%  Similarity=0.069  Sum_probs=87.8

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCC---CccccCCCchHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCccHHHH
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVE---VNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD-----VNKGQRSSSLHY   77 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~-----~~~~~g~t~l~~   77 (121)
                      ..++++.|+..|+.+.|+.++ +.+..   .+..+..+.||||+|+..|+.+++++|++.|++     +...+ .||||+
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll-~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLC-LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHT-TC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHH-HcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            458899999999997776655 44542   123455678999999999999999999999964     33333 899999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCc--cCcCCCCHHHHHH-hh
Q psy15272         78 AACFGRPSVAKVLLRHGANPDL--RDEDGKTPLDKAR-ER  114 (121)
Q Consensus        78 a~~~~~~~~~~~L~~~~~~~~~--~~~~g~tpl~~a~-~~  114 (121)
                      |+..|+.+++++|++.|++++.  +|..|.||||+|+ ..
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~  209 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR  209 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC
Confidence            9999999999999999999887  8889999999999 88

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=1.6e-18  Score=93.08  Aligned_cols=86  Identities=27%  Similarity=0.351  Sum_probs=76.4

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++++.|+..|+.+.+..++ +.+.+++..|..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+..
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CccchHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence            45678899999999997776655 56899999999999999999999999999999999998874  4589999999999


Q ss_pred             CCHHHHHHH
Q psy15272         82 GRPSVAKVL   90 (121)
Q Consensus        82 ~~~~~~~~L   90 (121)
                      ++.+++++|
T Consensus       101 ~~~~~~~~L  109 (110)
T 2zgd_A          101 GNEDLAEIL  109 (110)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            999999876

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.80  E-value=5.5e-19  Score=108.71  Aligned_cols=94  Identities=13%  Similarity=0.139  Sum_probs=82.2

Q ss_pred             CCCchHHHHHHHHh---CChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHH
Q psy15272          3 TCWPKRQLIECIRS---KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHY   77 (121)
Q Consensus         3 ~~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~   77 (121)
                      +..+.++++.|+..   ++. .+.++|.+.|++++.+|..|.||||+|+..|+.++++.|++.|++++.  ..|.||||+
T Consensus       166 ~~~g~t~Lh~A~~~~~~~~~-~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~  244 (278)
T 1dcq_A          166 HEPDETALHLAVRSVDRTSL-HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  244 (278)
T ss_dssp             SSTTCBHHHHHHHHCCTTTH-HHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCcchHHHHhcccchH-HHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHH
Confidence            34578899999999   666 455556666999999999999999999999999999999999998874  459999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCC
Q psy15272         78 AACFGRPSVAKVLLRHGANP   97 (121)
Q Consensus        78 a~~~~~~~~~~~L~~~~~~~   97 (121)
                      |+..|+.+++++|++.|++.
T Consensus       245 A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          245 AKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999998753

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.77  E-value=3.7e-18  Score=108.56  Aligned_cols=110  Identities=22%  Similarity=0.230  Sum_probs=80.4

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++|+.|+..++.+.+ ++|.+.|++++..|..|+||||+|+..++.+++++|++.|++++.  ..|.||||+|+..
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv-~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~  311 (368)
T 3jue_A          233 QDNATPLIQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET  311 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHCCCHHHH-HHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC
Confidence            4677899999999998655 556667999999999999999999999999999999999998874  4589999999999


Q ss_pred             CCHHHHHHHHHcC---CCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHG---ANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~---~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ++.+++++|+..+   .+....+..+.|+++++...
T Consensus       312 g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          312 ANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             TCHHHHHHHHHHHC----------------------
T ss_pred             CCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            9999999999875   33456667788888876554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.77  E-value=4.4e-19  Score=105.66  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=76.6

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~   80 (121)
                      +..+.++|+.|+..|+.+.+..|+...+.+++..|..|.||||+|+..++.+++++|++.|++++  +..|.|||++|+.
T Consensus       103 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  182 (222)
T 3ehr_A          103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN  182 (222)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc
Confidence            45678899999999999777665555599999999999999999999999999999999999887  4458999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCC
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGK  105 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~  105 (121)
                      .++.++++.|+..++....++..+.
T Consensus       183 ~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          183 AACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHHHHC-----------------
T ss_pred             hhHHHHHHHHhccchhhhccchhhh
Confidence            9999999999999998887776554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.77  E-value=1e-18  Score=101.40  Aligned_cols=78  Identities=26%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccC-cCCCCHHHHHHh
Q psy15272         37 DDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRD-EDGKTPLDKARE  113 (121)
Q Consensus        37 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~g~tpl~~a~~  113 (121)
                      +..|.||||+|+..|+.++++.|++ +.+++  +..|.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578999999999999999999999 87776  4458999999999999999999999999999988 899999999998


Q ss_pred             hc
Q psy15272        114 RV  115 (121)
Q Consensus       114 ~~  115 (121)
                      .+
T Consensus       120 ~~  121 (183)
T 3deo_A          120 YV  121 (183)
T ss_dssp             TT
T ss_pred             cC
Confidence            83

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.75  E-value=2.1e-18  Score=104.25  Aligned_cols=77  Identities=25%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             cCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccC-cCCCCHHHHHHh
Q psy15272         37 DDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRD-EDGKTPLDKARE  113 (121)
Q Consensus        37 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~g~tpl~~a~~  113 (121)
                      +..|.||||+|+..|+.++++.|+. |.+++  +..|.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            3568999999999999999999999 88776  4458999999999999999999999999999988 889999999998


Q ss_pred             h
Q psy15272        114 R  114 (121)
Q Consensus       114 ~  114 (121)
                      .
T Consensus       121 ~  121 (244)
T 3ui2_A          121 Y  121 (244)
T ss_dssp             T
T ss_pred             c
Confidence            8

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.71  E-value=7e-19  Score=112.19  Aligned_cols=100  Identities=13%  Similarity=0.041  Sum_probs=81.5

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCC---ccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC----CCCccHHHHH
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEV---NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYA   78 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~----~~g~t~l~~a   78 (121)
                      +.++++.|+..|+.+.|+. |.+.|.++   +..+.. .||||+|+..|+.+++++|++.|++++.    ..|.||||+|
T Consensus       128 ~~tpL~~Aa~~G~~eiv~~-Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~A  205 (376)
T 2aja_A          128 NYQAFRLAAENGHLHVLNR-LCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA  205 (376)
T ss_dssp             HHHHHHHHHHTTCHHHHHH-HHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHH-HHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHH
Confidence            4668999999999966655 55667552   222233 8999999999999999999999988543    3488999999


Q ss_pred             H-HhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         79 A-CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        79 ~-~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      + ..|+.+++++|++.|+       .|.||+++|++.
T Consensus       206 a~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~  235 (376)
T 2aja_A          206 AVGRGHHNVINFLLDCPV-------MLAYAEIHEFEY  235 (376)
T ss_dssp             HSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTT
T ss_pred             HHHCCCHHHHHHHHhCCC-------ccchHHHHHHHC
Confidence            9 9999999999998764       378999999988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 1e-17
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 42  TLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDL 99
           T L+ AS  G   +V+ L +RGA  N    +  + LH AA  G   VAK LL++ A  + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 100 RDEDGKTPLDKA 111
           + +D +TPL  A
Sbjct: 62  KAKDDQTPLHCA 73

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 3e-15
 Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 38/124 (30%)

Query: 33  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS-------------------- 72
            N  +  G T L+  +  G   + + L + G  V+   R                     
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 316

Query: 73  ---------------SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
                          S LH AA  G   +  +LL++GA+P+    DG TPL  A+     
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL--- 373

Query: 118 GHRE 121
           G+  
Sbjct: 374 GYIS 377

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 5e-14
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVA 87
                 M   G T L+ A+ +G   + E L ER A  N   ++  + LH A       + 
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 88  KVLLRHGANPDLRDEDGKTPL 108
           K+LL  G +P     +G TPL
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPL 202

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-13
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVA 87
           G   N  +   +T L+ A+  G  E+ ++L +  A VN       + LH AA  G  ++ 
Sbjct: 23  GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV 82

Query: 88  KVLLRHGANPDLRDEDGKTPLDKA 111
           K+LL + ANP+L    G TPL  A
Sbjct: 83  KLLLENNANPNLATTAGHTPLHIA 106

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 6e-10
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
             T      L    +      + E +       N     G T L+ A      ++V+ L 
Sbjct: 127 CMTKKGFTPLHVAAKYGKVR-VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 185

Query: 61  ERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
            RG   +       + LH AA   +  VA+ LL++G + +     G TPL  A
Sbjct: 186 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 238

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 36  MDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRH 93
               G T L+ A+  G  EMV  L  + A+ N G +S  + LH  A  G   VA VL++H
Sbjct: 227 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 286

Query: 94  GANPDLRDEDGKTPL 108
           G   D     G TPL
Sbjct: 287 GVMVDATTRMGYTPL 301

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 73.6 bits (179), Expect = 2e-17
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 26  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGR 83
           ++SG +        G T L+ A+A G  E+++ L +   DVN       + LH AA +G+
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 84  PSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
               ++L+ +  + +  ++ G+T  D A E +
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADEDI 276

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 6e-07
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 68  KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
           K    +    A   G       LL  GA+ +  + DG T L +A
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 4e-05
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 7  KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 66
          + + ++     +TD     +     +V F D     +   A + G  E V  L ERGAD+
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG---AVFLAACSSGDTEEVLRLLERGADI 66

Query: 67 NK--GQRSSSLHYAACFGRPSVAKVLLRH 93
          N       ++LH A       + K L+ +
Sbjct: 67 NYANVDGLTALHQACIDDNVDMVKFLVEN 95

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 7e-16
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 4   CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER- 62
                  +      D +A+   +   G +VN   + G+T L  A       +V+ L E+ 
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

Query: 63  GADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRD 101
             ++N       ++L  A       +A++L + GA+ D  D
Sbjct: 243 HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 5e-13
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 10/119 (8%)

Query: 10  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVE----FLCERGAD 65
           L++       + L   +D  G +VN  D++G+  L  A        VE     L + GAD
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 66  VNKGQRS--SSLHYAACFGRPSVAKVLLRH-GANPDLRDEDGKTPLDKARERVDEGHRE 121
           VN       + L  A       + + LL       +  D DGKT L  A   V+   ++
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA---VELKLKK 267

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 1e-10
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 33  VNFMDDVGQTLLNWASAFGTQEMVEFLC-ERGADVNKGQRSSSLHYAACFGRPS------ 85
              +   G T L  A+  G  E+++ L  E GADVN                        
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARER 114
           +  +LL HGA+ ++R E GKTPL  A E+
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEK 229

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRH 93
             LL  A      ++V+ L E GA+VN  +     + LH A    R  + ++LLRH
Sbjct: 5  DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 7e-06
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 75  LHYAACFGRPSVAKVLLRHGANPDLRD-EDGKTPLDKARERVDEGHRE 121
           L  A       + + LL  GAN + ++ E G TPL  A   V     +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA---VQMSRED 53

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-05
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 10  LIECIRSKDTDALIETIDSGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFL--CERGADV 66
           LI+ ++++D D L++ +  GG  VNF ++  G T L+ A     +++VE L        +
Sbjct: 9   LIKAVQNEDVD-LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 67  NKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
            K   ++    AA  G   + K+ L  GA+ +  D  G T   +A
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.6 bits (161), Expect = 8e-15
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 12  ECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER---GADVNK 68
              +      +   +      +    +  ++  N  +      ++E L  +      +N 
Sbjct: 195 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 254

Query: 69  G--QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
                 + L+ AA  G  S+   LL +GA+P + ++ G  P+D  
Sbjct: 255 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.8 bits (107), Expect = 2e-07
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 3/105 (2%)

Query: 10  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK- 68
           L   +  +  +      +      +      Q   + +     QE+ +       ++N  
Sbjct: 43  LQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIP 102

Query: 69  --GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
                ++ LH+        + K L++HG+N    D  G++ L KA
Sbjct: 103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 2e-13
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 35/152 (23%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
                     +    S   D +++ +   G +VN ++  G T L++A++    E+   L 
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 61  ERGADVNK-----------------------------------GQRSSSLHYAACFGRPS 85
           E GA+ +                                     + ++ LH A    R  
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 183

Query: 86  VAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
            AK+L+  GA+  + +++ KTPL  A+  +  
Sbjct: 184 EAKLLVSQGASIYIENKEEKTPLQVAKGGLGL 215

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 2e-11
 Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 35/140 (25%)

Query: 4   CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQE--------- 54
           C     +     S   + L E+I +        D   +T L+WA + G  E         
Sbjct: 1   CVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60

Query: 55  ------------------------MVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAK 88
                                   +V+ L  +GA VN   ++  + LHYAA   R  +A 
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 89  VLLRHGANPDLRDEDGKTPL 108
           +LL  GANPD +D    T +
Sbjct: 121 MLLEGGANPDAKDHYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 7e-04
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 75  LHYAACFGR-PSVAKVLLRHGANPDLRDEDGKTPLDKA 111
           +   A  G+   + + +L   +     D+D +T L  A
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWA 44

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.1 bits (149), Expect = 3e-13
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 30  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSV 86
               +     G+T L++A+      +V++L          Q     + +  AA  GR  V
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 87  AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
              L++ GA+ +  D    T    A+      H  
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQAN---NHHN 268

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.7 bits (130), Expect = 1e-10
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 10  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK- 68
           L    +  +   +   +   G   +  D+ G+T +  A+  G  E+V +L ++GA V   
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 250

Query: 69  -GQRSSSLHYAACFGRPSVAKVLLR 92
                ++   A      ++  +  R
Sbjct: 251 DATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 47  ASAFGTQEMVEFLCERGADVNKGQR-SSSLHYAACFGRPSVAKVLLRH--------GANP 97
             A G+  + E +     ++   +   + LH+ A       ++ L+ H        GA+ 
Sbjct: 8   TEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 67

Query: 98  DLRDEDGKTPL 108
           +  D D  TPL
Sbjct: 68  NAMDCDENTPL 78

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.4 bits (142), Expect = 2e-12
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
                     +        + ++E + +   ++N  D+ G+T L+WA+A    E V  L 
Sbjct: 84  NARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 143

Query: 61  ERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEG 118
              A+ +    +  + L  AA  G    +K LL + AN ++ D   + P D A ER    
Sbjct: 144 MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASER---L 200

Query: 119 HRE 121
           H +
Sbjct: 201 HHD 203

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 3e-06
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 34  NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVL 90
           +  DD  +T L  A+  G+ E  + L +  A+              A+      + ++L
Sbjct: 150 DAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.3 bits (95), Expect = 6e-06
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 52 TQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRH 93
          T +++  L  +GA++N        +SLH AA F R   AK LL  
Sbjct: 1  TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA 45

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-11
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 44  LNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRD 101
           L  A    +  MV+ L + GA+VN    S  S+LH A+  G   + + L+R GA+  L++
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 207

Query: 102 EDGKTPLDKARERVDEGHRE 121
               TPL  AR R      +
Sbjct: 208 CHNDTPLMVARSR---RVID 224

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-06
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 75  LHYAACFGRPSVAKVLL----RHGANPDLRDEDGKTPLDKARER 114
           LH A   G       L+    + G   D+ +   +TPL  A   
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-06
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
                  R  +      ++ ++++ +   G  VN     G + L+ AS  G   +V  L 
Sbjct: 138 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 197

Query: 61  ERGADVNK--GQRSSSLHYAACFGRPSVAK 88
             GAD +       + L  A       + +
Sbjct: 198 RSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 56.4 bits (135), Expect = 4e-11
 Identities = 10/96 (10%), Positives = 19/96 (19%), Gaps = 7/96 (7%)

Query: 20  DALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ---EMVEFLCERGADVNKGQRS--SS 74
                       + +      + +   A+  G     + +  L      V   Q     +
Sbjct: 70  AHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA 129

Query: 75  LHYAACFGRPSVAKVLLRHGANPDLRDED--GKTPL 108
              AA  G   V   L        +           
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 165

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.5 bits (130), Expect = 2e-10
 Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 7/99 (7%)

Query: 22  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSS----SLHY 77
            +  + +    V  +          A+  G   ++  LCE           +    +   
Sbjct: 108 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 167

Query: 78  AACFGRPSVAKVLLRHGANPD---LRDEDGKTPLDKARE 113
           AA  G   V   L           ++ E+       A  
Sbjct: 168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 206

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.9 bits (92), Expect = 2e-05
 Identities = 9/62 (14%), Positives = 14/62 (22%), Gaps = 7/62 (11%)

Query: 40  GQTLLNWASAFGTQEMVEFLCERGAD-------VNKGQRSSSLHYAACFGRPSVAKVLLR 92
               L   +     + + FL                G  +  L  A   G      +LL 
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

Query: 93  HG 94
             
Sbjct: 339 IP 340

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 5e-10
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 34  NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLL 91
                 G+T L+ A       ++E L + GAD         + L  A     P +A++L 
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

Query: 92  RHGANPDLRDEDG 104
            HGA      EDG
Sbjct: 246 AHGAP---EPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 1e-09
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 20  DALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLH 76
           +      +   +++   +  G T L+ A      EMV  L + GAD+NK       + LH
Sbjct: 138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197

Query: 77  YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
            A      SV ++LL+ GA+P  R   G+TPL  A  R    +  
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR---PNPI 239

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 1e-07
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 75  LHYAACFGRPSVAKVLLRHGANP---DLRDEDGKTPLDKA 111
           LH A           LL   A     DL+++ G+T L  A
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 6e-07
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK-----GQRSSSLHYAACFGRP 84
           ++ + G T L+ A     +  ++FL    A             ++LH AA  G  
Sbjct: 3  GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 7e-06
 Identities = 10/68 (14%), Positives = 19/68 (27%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
                  R  +         +++E +   G +       G+T L  A       +   L 
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

Query: 61  ERGADVNK 68
             GA   +
Sbjct: 246 AHGAPEPE 253

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 1e-09
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 13/122 (10%)

Query: 10  LIECIRSKDTDALIETIDSG-----GVEVNFMDDVGQTLLNWASAF---GTQEMVEFLCE 61
           L E ++++D   L++    G      + +    +  +T L+ A       +  +V+FL +
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 62  RGADVNKGQRSSSLHYAACFGRPS--VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
              +++K     S     C    +    K+LLR  A+ ++ +E G+TPLD A+      H
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL---KH 126

Query: 120 RE 121
             
Sbjct: 127 EH 128

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 8/65 (12%), Positives = 21/65 (32%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
            +        +      D    ++ +  G   +   ++ G+T L+ A     +   E L 
Sbjct: 75  DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 134

Query: 61  ERGAD 65
           +  + 
Sbjct: 135 QALSG 139

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 5e-07
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
            +        +     K    + + +   G  V   D   Q  L+ A++ G+ +++E LC
Sbjct: 99  NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 158

Query: 61  ERGADVNKGQRS---SSLHYAACFGRPSVAKVLL-RHGANPDLRDEDGKTPLDKARER 114
             G      Q     + L +A   G    A +L+ ++GA  DL D  G    D A   
Sbjct: 159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 1e-06
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 75  LHYAACFGRPSVAKVLL-RHGANPDLRDEDGKTPLDKA 111
           LH A         + LL    +    +D+DG+ PL  +
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 1e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
            Q       L   +     DA +  ++  G E + +D+ G    + A     +++ +F  
Sbjct: 167 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFL 223

Query: 61  ERGAD 65
               D
Sbjct: 224 NNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 8e-04
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG 63
          L +     +   + E + S    +   D  G+  L+W+ +F   E+  FL  + 
Sbjct: 4  LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-06
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 45  NWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGANPDLRD 101
           + AS  G   +VE L   GADVN  +     ++LH A     P +  +LL+ GA+ +   
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 175

Query: 102 EDGKTPLDKARERVDEGHRE 121
             G +P      R       
Sbjct: 176 YQGYSPYQLTWGR---PSTR 192

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 5e-06
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 75  LHYAACFGRPSVAKVLLR----HGANPDLRDEDGKTPLDKARE 113
           LH A      ++   ++R      A  + ++   +TPL  A  
Sbjct: 6   LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 8e-06
 Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 7/111 (6%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
                    L           +   +  G          G+T L+ A      ++V  L 
Sbjct: 106 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 165

Query: 61  ERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGAN-----PDLRDEDG 104
           + GADVN+      S            + + L +         P+  DE+ 
Sbjct: 166 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 216

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-05
 Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 37/116 (31%)

Query: 42  TLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPS---------------- 85
            LL  +S  G  ++V+ +     D +                                  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 86  -------------------VAKVLLRHGANPDLRD-EDGKTPLDKARERVDEGHRE 121
                              V K L+  GA        D +T  DK  E ++EG+ +
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE-MEEGYTQ 117

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 2e-05
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 73  SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGK 105
           + L  AA  G       LL++  N + ++  G+
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.4 bits (77), Expect = 0.001
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 75  LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
           LH+A       V ++L+++GA+   + +  KT  D +   +D G+ +
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS---IDNGNED 147

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (76), Expect = 0.002
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
                  R  +    S+    ++E +   G +VN  D +  T L+WA+    QE+VE L 
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 61  ERGADVNKGQRS--SSLHYAACFGRPSVAKVL 90
           + GADV+   +   ++   +   G   +A++L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (74), Expect = 0.003
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 75  LHYAACFGRPSVAKVLL-RHGANPDLRDEDGKTP 107
           L  AA  G     + LL R   +PD  +  GKT 
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (74), Expect = 0.004
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 3/95 (3%)

Query: 1   MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
                     +           ++ +   G +VN  D  G   ++ A   G   +V F  
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-L 120

Query: 61  ERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRH 93
              +D+++      + L  A   G   +  +L  H
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.87
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.86
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.83
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.82
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.82
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.81
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.8
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.79
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.73
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.73
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.72
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.69
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.68
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.6
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.59

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=2.3e-29  Score=135.95  Aligned_cols=107  Identities=28%  Similarity=0.463  Sum_probs=97.4

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP   84 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~   84 (121)
                      .+||++|+.+|+.+.|+.++ +.|.+++..+..|+||+|+|+..++.+++++|++.|++++.  ..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll-~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-TTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHH-HhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            47899999999997776655 66899999999999999999999999999999999998874  4589999999999999


Q ss_pred             HHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         85 SVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        85 ~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +++++|++.|++++.+|..|.|||++|...
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~  111 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEATDNQ  111 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTCSST
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHHhHH
Confidence            999999999999999999999999987543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.7e-27  Score=127.97  Aligned_cols=107  Identities=25%  Similarity=0.303  Sum_probs=95.1

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCC--CC-ccHHHHHHHhC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QR-SSSLHYAACFG   82 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~--~g-~t~l~~a~~~~   82 (121)
                      ..+.|+.|+.+|+.+.|+.++ +.|.+++.++..|.||+|+|+ .|+.+++++|++.|++++..  .+ .+|||+|++.|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll-~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHH-HcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            356799999999997776655 668999999999999999764 78999999999999988743  34 47999999999


Q ss_pred             CHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        83 ~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.+++++|++.|++++.+|..|.||+|+|++.
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~  112 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL  112 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHc
Confidence            99999999999999999999999999999998

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4e-26  Score=125.02  Aligned_cols=106  Identities=28%  Similarity=0.300  Sum_probs=93.6

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGR   83 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~   83 (121)
                      |-..++.|+..|+.+.|+. |.+.|.+++.+|..|+||||+|+..++.+++++|++.|++++  +.+|+||||+|+..|+
T Consensus         1 pl~lL~~A~~~G~~~~v~~-Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           1 PLALLLDSSLEGEFDLVQR-IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             CHHHHHHHHHHTCHHHHHH-HTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             ChHHHHHHHHcCCHHHHHH-HHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhH
Confidence            3467899999999977765 556789999999999999999999999999999999998877  4569999999999999


Q ss_pred             HHHHHHHHHcCCCCCccCc-CCCCHHHHHH
Q psy15272         84 PSVAKVLLRHGANPDLRDE-DGKTPLDKAR  112 (121)
Q Consensus        84 ~~~~~~L~~~~~~~~~~~~-~g~tpl~~a~  112 (121)
                      .+++++|++.|++++.++. .+.||++++.
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~  109 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCE  109 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCC
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHH
Confidence            9999999999999997764 5889988764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.5e-25  Score=124.26  Aligned_cols=107  Identities=28%  Similarity=0.481  Sum_probs=92.9

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCCCccc------cCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCC--CCCccHHH
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVEVNFM------DDVGQTLLNWASAF---GTQEMVEFLCERGADVNK--GQRSSSLH   76 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~------~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~--~~g~t~l~   76 (121)
                      ..+++|++.++...+.+++.. |.+++..      +..|.||||+|+..   +..+++++|++.|++++.  ..|+||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            357899999999999887755 6565533      56789999999975   678999999999998874  45999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        77 ~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      +|+..|+.+++++|++.|++++.+|..|.||||+|++.+
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~  125 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK  125 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccccccccccccccccCccccccCCCCCCHHHHHHHcC
Confidence            999999999999999999999999999999999999883

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.4e-24  Score=119.37  Aligned_cols=106  Identities=25%  Similarity=0.391  Sum_probs=90.9

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHc------------------------
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER------------------------   62 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~------------------------   62 (121)
                      .++|+.|++.|+.+.|..||.. |.+++ .|..|.||||+|+..++.+++..++..                        
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4789999999999888776655 77776 688999999999999999887777654                        


Q ss_pred             ---------CCCCC--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         63 ---------GADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        63 ---------~~~~~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                               +.++.  +..|+||||+|+..|+.+++++|++.|++++.+|..|.|||++|+..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHc
Confidence                     22222  35589999999999999999999999999999999999999999998

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.9e-23  Score=122.59  Aligned_cols=109  Identities=24%  Similarity=0.271  Sum_probs=95.1

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAAC   80 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~   80 (121)
                      +..+.++++.|+..++.+.++ +|.+.|.+++..+..|.||+|+++..+...+++.|...+.+++  +..|+||||+|+.
T Consensus       100 d~~g~tpL~~A~~~~~~e~~~-~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~  178 (223)
T d1uoha_         100 NQNGCTPLHYAASKNRHEIAV-MLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD  178 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             CCCCCchhhHHHHcCCHHHHH-HHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccc
Confidence            455678899999999885554 4556788999889999999999999999999999999988876  4458999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCccCcCCCCHHHHHH
Q psy15272         81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR  112 (121)
Q Consensus        81 ~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~  112 (121)
                      .|+.+++++|++.|++++.+|..|.||||+|+
T Consensus       179 ~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         179 EERVEEAKLLVSQGASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC
T ss_pred             cCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999999884

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.7e-23  Score=116.11  Aligned_cols=106  Identities=25%  Similarity=0.341  Sum_probs=76.5

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCC---------------------
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD---------------------   65 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~---------------------   65 (121)
                      ..+|+.|+..|+.+.|+.+|.+.+.+++..|..|+||||+|+ .++.+++++|++.+.+                     
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            456788888888888888777777788877888888887765 3666777777665443                     


Q ss_pred             ------------CC--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         66 ------------VN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        66 ------------~~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                                  ++  +..|.||||+|+..|+.+++++|+ .|++++.+|..|.||||+|++.
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~  143 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHS
T ss_pred             cccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHc
Confidence                        32  233667777777777777777666 5677777777778888877776

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=1.5e-23  Score=126.70  Aligned_cols=46  Identities=24%  Similarity=0.260  Sum_probs=43.2

Q ss_pred             CCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         70 QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        70 ~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      .|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|++.+
T Consensus       220 ~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         220 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcC
Confidence            3679999999999999999999999999999999999999999983

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=122.88  Aligned_cols=110  Identities=29%  Similarity=0.363  Sum_probs=95.9

Q ss_pred             CchHHHHHHHHhCChHHHHHHHH---hCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCC----------------
Q psy15272          5 WPKRQLIECIRSKDTDALIETID---SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD----------------   65 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~---~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~----------------   65 (121)
                      .|.+|||.||..|+.+.+..++.   +.|.+++.+|..|+||||+|+..++.++++.|++.|++                
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            36789999999999988877664   67899999999999999999999999999999976321                


Q ss_pred             --------------------------------------------------------------------------------
Q psy15272         66 --------------------------------------------------------------------------------   65 (121)
Q Consensus        66 --------------------------------------------------------------------------------   65 (121)
                                                                                                      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                                                                                            


Q ss_pred             --------CC--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         66 --------VN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        66 --------~~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                              ..  +..|.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|++.
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC
Confidence                    11  23367999999999999999999999999999999999999999887

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-22  Score=120.18  Aligned_cols=110  Identities=32%  Similarity=0.433  Sum_probs=80.2

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCC------------------
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV------------------   66 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~------------------   66 (121)
                      .++..++.++..|+.+.|++++...+..++.+|..|+||||+|+..|+.+++++++..+...                  
T Consensus         2 ~~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           2 VSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             CSSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHT
T ss_pred             cCHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence            45567888999999999999999988889999999999999999999888888777654332                  


Q ss_pred             ---------------C--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         67 ---------------N--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        67 ---------------~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                                     +  +..|.||||+|+..++.+++++|++.|++++.++..|.||+++|+..
T Consensus        82 ~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~  146 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK  146 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhc
Confidence                           2  22355666666666666666666666666666666666666665554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-22  Score=127.36  Aligned_cols=110  Identities=31%  Similarity=0.365  Sum_probs=98.3

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~   81 (121)
                      ..+.++++.++..++.+.+. +|.+.|.+++..+..+.||||.++..+..++++.+++.|.+++.  .+|.||||+|++.
T Consensus       262 ~~g~~~l~~a~~~~~~~i~~-~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~  340 (408)
T d1n11a_         262 KSGLTPLHLVAQEGHVPVAD-VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ  340 (408)
T ss_dssp             TTCCCHHHHHHHHTCHHHHH-HHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCChhhhhhhcCcHHHHH-HHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHc
Confidence            45567889999999986555 45567899998899999999999999999999999999998874  4589999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        82 ~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      |+.+++++|++.|++++.+|.+|.||||+|++.
T Consensus       341 g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         341 GHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            999999999999999999999999999999998

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-22  Score=113.35  Aligned_cols=105  Identities=30%  Similarity=0.384  Sum_probs=86.4

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--------------------
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--------------------   67 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--------------------   67 (121)
                      ++|+.|+..|+.+.|+.|+ +.|.+++..|..|.||||+|+ .++.++++.|++.|++++                    
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll-~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHH-HCCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            7889999999997776644 568999999999999999875 688999999998876533                    


Q ss_pred             ---------------CCCCccHHHHHHHhCCHHHHHHHHHcCC-CCCccCcCCCCHHHHHHhh
Q psy15272         68 ---------------KGQRSSSLHYAACFGRPSVAKVLLRHGA-NPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        68 ---------------~~~g~t~l~~a~~~~~~~~~~~L~~~~~-~~~~~~~~g~tpl~~a~~~  114 (121)
                                     +..|.+++++|+..++.+++++|+++++ +++.+|..|.||||+|++.
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~  143 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY  143 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHc
Confidence                           1235678888888899999999888875 7888899999999999887

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-22  Score=112.70  Aligned_cols=88  Identities=22%  Similarity=0.298  Sum_probs=74.3

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~   81 (121)
                      ..+..+++.++..++.+.+ +++.+.+.+++.+|..|.+|||+|+..++.+++++|+ .|++++  +..|.||||+|+..
T Consensus        66 ~~~~~~l~~~~~~~~~~~~-~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~  143 (156)
T d1bd8a_          66 TSGTSPVHDAARTGFLDTL-KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHH-HHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHS
T ss_pred             ccccccccccccccccccc-ccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHc
Confidence            4556778889999988555 5555678899999999999999999999999999887 576666  45589999999999


Q ss_pred             CCHHHHHHHHHc
Q psy15272         82 GRPSVAKVLLRH   93 (121)
Q Consensus        82 ~~~~~~~~L~~~   93 (121)
                      |+.+++++|+++
T Consensus       144 g~~~iv~~Ll~h  155 (156)
T d1bd8a_         144 GAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTT
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=6.2e-22  Score=116.78  Aligned_cols=107  Identities=24%  Similarity=0.309  Sum_probs=85.7

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--------------------
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--------------------   67 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--------------------   67 (121)
                      .|+|+||..|+.+.++.++...+.+++.+|.+|+||||+|+..|+.+++++|++.|++++                    
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            478999999999999998888888888889999999999999999999999987654311                    


Q ss_pred             -----------------------------------------------------CCCCccHHHHHHHhCCHHHHHHHHHcC
Q psy15272         68 -----------------------------------------------------KGQRSSSLHYAACFGRPSVAKVLLRHG   94 (121)
Q Consensus        68 -----------------------------------------------------~~~g~t~l~~a~~~~~~~~~~~L~~~~   94 (121)
                                                                           +..|.||||+|+..++.++++.|++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence                                                                 122457778888788888888888775


Q ss_pred             -CCCCccCcCCCCHHHHHHhh
Q psy15272         95 -ANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        95 -~~~~~~~~~g~tpl~~a~~~  114 (121)
                       .+++.+|..|.||||+|+..
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~  182 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAE  182 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHT
T ss_pred             cccccccccccCCchhhhccc
Confidence             56677888888888888776

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=6.8e-22  Score=118.25  Aligned_cols=82  Identities=37%  Similarity=0.424  Sum_probs=74.5

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHH
Q psy15272         34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDK  110 (121)
Q Consensus        34 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~---~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~  110 (121)
                      +.++..|.||||+|+..++.+++++|++.+.+...   ..|.||||+|+..++.+++++|++.|++++.+|..|.||||+
T Consensus       152 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~  231 (255)
T d1oy3d_         152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS  231 (255)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            34677789999999999999999999999887663   448999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q psy15272        111 ARERV  115 (121)
Q Consensus       111 a~~~~  115 (121)
                      |+..+
T Consensus       232 A~~~~  236 (255)
T d1oy3d_         232 ALLRP  236 (255)
T ss_dssp             HHTSS
T ss_pred             HHHCC
Confidence            99883

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.4e-22  Score=117.65  Aligned_cols=113  Identities=25%  Similarity=0.340  Sum_probs=86.8

Q ss_pred             CCCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHc-------------------
Q psy15272          2 QTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-------------------   62 (121)
Q Consensus         2 ~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~-------------------   62 (121)
                      ++..+.+||+.|+..++.+ +.++|.+.|.+++..|..|.+|+++++..+..++++.++..                   
T Consensus        35 ~d~~g~TpLh~A~~~~~~~-iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t  113 (221)
T d1iknd_          35 QNNLQQTPLHLAVITNQPE-IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT  113 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHH-HHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred             CCCCCCccccccccccccc-cccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccch
Confidence            3456777888888888774 44555666777877777777777777777776666666543                   


Q ss_pred             --------------------CCCCC---CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         63 --------------------GADVN---KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        63 --------------------~~~~~---~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                                          |...+   +..|.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+..+
T Consensus       114 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~  189 (221)
T d1iknd_         114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP  189 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSS
T ss_pred             hhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCC
Confidence                                33332   234789999999999999999999999999999999999999998773

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.4e-21  Score=119.85  Aligned_cols=109  Identities=17%  Similarity=0.263  Sum_probs=85.6

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCH-------HHHHH-----------------
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ-------EMVEF-----------------   58 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~-------~~~~~-----------------   58 (121)
                      +..+.++||.|+..|+.+.|. +|.+.|++++.+|..|+||||.|+..++.       ++++.                 
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~-~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVK-HLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHH-HHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHH-HHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            456778999999999996665 45577999999999999999999975421       22221                 


Q ss_pred             -------------------------HHHcC---------------------------------------CCCCCCCCccH
Q psy15272         59 -------------------------LCERG---------------------------------------ADVNKGQRSSS   74 (121)
Q Consensus        59 -------------------------l~~~~---------------------------------------~~~~~~~g~t~   74 (121)
                                               +.+.+                                       ++..+..|+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence                                     11111                                       12224558999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHH
Q psy15272         75 LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR  112 (121)
Q Consensus        75 l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~  112 (121)
                      ||+|++.|+.+++++|++.|++++.+|..|.|||++|+
T Consensus       263 Lh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999999999999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=2.4e-23  Score=129.96  Aligned_cols=111  Identities=14%  Similarity=0.038  Sum_probs=91.6

Q ss_pred             CCchHHHHHHHHhCChHHHHH--HHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC----CCCccHHHH
Q psy15272          4 CWPKRQLIECIRSKDTDALIE--TIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHY   77 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~--ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~----~~g~t~l~~   77 (121)
                      ..+.++++.|+.+|+.+.+..  +|.+.+.+++..|..|+||||+|+..|+.+++++|++.|++++.    .+|.||||+
T Consensus        88 ~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~  167 (346)
T d2ajaa1          88 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL  167 (346)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHH
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHH
Confidence            356788999999999876543  47888999999999999999999999999999999999998763    248899999


Q ss_pred             HHHhCCHHHHHHHHHcCCCC---CccCcCCCCHHHHHHhh
Q psy15272         78 AACFGRPSVAKVLLRHGANP---DLRDEDGKTPLDKARER  114 (121)
Q Consensus        78 a~~~~~~~~~~~L~~~~~~~---~~~~~~g~tpl~~a~~~  114 (121)
                      |+..|+.+++++|++.|+..   +.++..+.||++.|++.
T Consensus       168 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~  207 (346)
T d2ajaa1         168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR  207 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhc
Confidence            99999999999999998765   34455667888888887

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=1e-20  Score=110.13  Aligned_cols=101  Identities=28%  Similarity=0.402  Sum_probs=90.1

Q ss_pred             HHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCCHHHHHHHH
Q psy15272         14 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLL   91 (121)
Q Consensus        14 ~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~L~   91 (121)
                      +.......+..+|...+.+++..+..|.||++.++..+...+++.++..+.+++  +..|.||||+|+..|+.+++++|+
T Consensus        97 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  176 (209)
T d1ot8a_          97 AARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL  176 (209)
T ss_dssp             HHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHH
Confidence            334444466677778899999999999999999999999999999999988776  445899999999999999999999


Q ss_pred             HcCCCCCccCcCCCCHHHHHHhh
Q psy15272         92 RHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        92 ~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +.|++++.+|..|.||||+|++.
T Consensus       177 ~~gad~n~~d~~g~Tpl~~A~~~  199 (209)
T d1ot8a_         177 DNFANREITDHMDRLPRDVASER  199 (209)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHc
Confidence            99999999999999999999998

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=5.8e-21  Score=102.62  Aligned_cols=75  Identities=31%  Similarity=0.388  Sum_probs=70.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         41 QTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        41 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      .|||++|+..|+.++++.|++.|++++.  ..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcC
Confidence            4799999999999999999999998874  45899999999999999999999999999999999999999999983

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.7e-20  Score=109.66  Aligned_cols=110  Identities=26%  Similarity=0.299  Sum_probs=93.6

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCC-CCC--CCCCccHHHHHHH
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVN--KGQRSSSLHYAAC   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~-~~~--~~~g~t~l~~a~~   80 (121)
                      .....+++.++..++.+.+ ..+...+.+.+..|..|+||+|+|+..++.++++.|++.+. +++  +..|.||||+|+.
T Consensus       103 ~~~~~~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~  181 (229)
T d1ixva_         103 NQGVTCLHLAVGKKWFEVS-QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA  181 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHH-HHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccchhhhh-hhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcc
Confidence            3455677888888888544 55666788888889999999999999999999999999874 444  4569999999999


Q ss_pred             hCCHHHHHHHHHc-CCCCCccCcCCCCHHHHHHhh
Q psy15272         81 FGRPSVAKVLLRH-GANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        81 ~~~~~~~~~L~~~-~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .++.+++++|++. |++++.+|..|.|||++|+..
T Consensus       182 ~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             TTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             cccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH
Confidence            9999999999974 999999999999999998754

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-19  Score=109.55  Aligned_cols=110  Identities=25%  Similarity=0.273  Sum_probs=95.5

Q ss_pred             CchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcC----CHHHHHHHHHcCCCCCC--CCCccHHHHH
Q psy15272          5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFG----TQEMVEFLCERGADVNK--GQRSSSLHYA   78 (121)
Q Consensus         5 ~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~l~~~~~~~~~--~~g~t~l~~a   78 (121)
                      .+.++++.|+..++.+.+..|+...+.+++..+..+.+++..+...+    ...++++|++.|++++.  ..|.||||+|
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a  226 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA  226 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchh
Confidence            45678999999999999988888889999999988888777655543    34688999999998874  4589999999


Q ss_pred             HHhCCHHHHHHHHHc-CCCCCccCcCCCCHHHHHHhh
Q psy15272         79 ACFGRPSVAKVLLRH-GANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        79 ~~~~~~~~~~~L~~~-~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      +..++.+++++|++. |++++.+|..|.||||+|++.
T Consensus       227 ~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~  263 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             hhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            999999999999985 899999999999999999998

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=5.3e-20  Score=102.96  Aligned_cols=92  Identities=13%  Similarity=0.156  Sum_probs=78.6

Q ss_pred             CCchHHHHHHHHh---CChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHH
Q psy15272          4 CWPKRQLIECIRS---KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYA   78 (121)
Q Consensus         4 ~~~~~~l~~a~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a   78 (121)
                      ..+.+++|.|+..   +.. .+.++|.++|.+++.+|..|+||||+|+..|+.+++++|++.|++++  +..|.||||+|
T Consensus        43 ~~g~t~Lh~A~~~~~~~~~-~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  121 (154)
T d1dcqa1          43 EPDETALHLAVRSVDRTSL-HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA  121 (154)
T ss_dssp             STTCBHHHHHHHHCCTTTH-HHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCchHHHHHHhcCCCCH-HHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHH
Confidence            3456789999975   344 55566667799999999999999999999999999999999999887  45599999999


Q ss_pred             HHhCCHHHHHHHHHcCCC
Q psy15272         79 ACFGRPSVAKVLLRHGAN   96 (121)
Q Consensus        79 ~~~~~~~~~~~L~~~~~~   96 (121)
                      ++.|+.+++++|++.+..
T Consensus       122 ~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         122 KRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHTTCHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHhCCC
Confidence            999999999999987543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.82  E-value=4.8e-22  Score=119.96  Aligned_cols=96  Identities=25%  Similarity=0.376  Sum_probs=71.5

Q ss_pred             ChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHH--------HHcCCCCC--CCCCccHHHHHHHhCCHHHH
Q psy15272         18 DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL--------CERGADVN--KGQRSSSLHYAACFGRPSVA   87 (121)
Q Consensus        18 ~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l--------~~~~~~~~--~~~g~t~l~~a~~~~~~~~~   87 (121)
                      +.+.+.+.|.+.+.+... +..|+||||+|+..|+.++++.|        +..|++++  +.+|.||||+|+..|+.+++
T Consensus        12 ~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv   90 (277)
T d2fo1e1          12 GSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV   90 (277)
T ss_dssp             SSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccc
Confidence            334666667665544322 24588888888888888776655        45577776  34588888888888888888


Q ss_pred             HHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         88 KVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        88 ~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      ++|++.|++++.++..|.||+++|...
T Consensus        91 ~~Ll~~Gad~n~~~~~g~t~l~~a~~~  117 (277)
T d2fo1e1          91 AYLMKAGADPTIYNKSERSALHQAAAN  117 (277)
T ss_dssp             HHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             ccccccccccccccccccccccchhhh
Confidence            888888888888888888888888776

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.82  E-value=1.4e-19  Score=109.92  Aligned_cols=108  Identities=31%  Similarity=0.466  Sum_probs=97.2

Q ss_pred             chHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCC
Q psy15272          6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGR   83 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~   83 (121)
                      +.++|+.||..|+.+.|..|| +.|++++..|..|+||||+|+..|+.+++++|++.+.+...  ..+.+||+.++..++
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll-~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CchHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            357799999999998887766 55899999999999999999999999999999999987653  447899999999999


Q ss_pred             HHHHHHHHHcCCCCCccCcCCCCHHHHHHhh
Q psy15272         84 PSVAKVLLRHGANPDLRDEDGKTPLDKARER  114 (121)
Q Consensus        84 ~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~  114 (121)
                      .++++.|++.|+..+.++..+.+|+++|+..
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~  149 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             cchhhcccccCcccccccccCcccccccccc
Confidence            9999999999999999999999999988765

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.5e-20  Score=100.63  Aligned_cols=74  Identities=30%  Similarity=0.382  Sum_probs=69.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHHhhc
Q psy15272         42 TLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV  115 (121)
Q Consensus        42 ~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~~~~  115 (121)
                      ++|+.|+..|+.+++++|++.|++++  +.+|+||||+|+..++.+++++|++.|++++.+|.+|+||||+|+..+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhh
Confidence            68899999999999999999999887  455999999999999999999999999999999999999999999883

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=6e-19  Score=105.31  Aligned_cols=93  Identities=25%  Similarity=0.247  Sum_probs=79.8

Q ss_pred             CCCchHHHHHHHHhCChHHHHHHHHhCCCCCc-cccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHH
Q psy15272          3 TCWPKRQLIECIRSKDTDALIETIDSGGVEVN-FMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA   79 (121)
Q Consensus         3 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~   79 (121)
                      +..+.++++.|+..++.+.+..++. .+.+.+ ..+..|.||||+|+..++.+++++|++.|++++.  ..|.||||+|+
T Consensus       155 d~~g~TpLh~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~  233 (255)
T d1oy3d_         155 NYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL  233 (255)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccCcccccccccccccccccchhc-ccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            4567789999999999977666554 466665 4567899999999999999999999999998874  44899999999


Q ss_pred             HhCCHHHHHHHHHcCCC
Q psy15272         80 CFGRPSVAKVLLRHGAN   96 (121)
Q Consensus        80 ~~~~~~~~~~L~~~~~~   96 (121)
                      ..++.+++++|++.||+
T Consensus       234 ~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         234 LRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TSSCHHHHHHHHHTTCC
T ss_pred             HCCCHHHHHHHHHcCCC
Confidence            99999999999999996

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.80  E-value=2.5e-20  Score=113.27  Aligned_cols=81  Identities=27%  Similarity=0.339  Sum_probs=73.9

Q ss_pred             ccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHH
Q psy15272         34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA  111 (121)
Q Consensus        34 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a  111 (121)
                      ...+..|.||+|.|+..++.++++.|++.|++++  +..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            3456778999999999999999999999999886  45589999999999999999999999999999999999999998


Q ss_pred             Hhh
Q psy15272        112 RER  114 (121)
Q Consensus       112 ~~~  114 (121)
                      ++.
T Consensus       273 ~e~  275 (291)
T d1s70b_         273 DED  275 (291)
T ss_dssp             CSG
T ss_pred             HHH
Confidence            763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.5e-19  Score=105.71  Aligned_cols=93  Identities=23%  Similarity=0.273  Sum_probs=81.5

Q ss_pred             HHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHH-cCCCCCC--CCCccHHHHHHHhCCHHH
Q psy15272         10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCE-RGADVNK--GQRSSSLHYAACFGRPSV   86 (121)
Q Consensus        10 l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~--~~g~t~l~~a~~~~~~~~   86 (121)
                      .+.++..++.+.+.+.|.+.|.+++.++..|.||||.|+..++.+++++|+. .|.+++.  .+|.||||+|+..|+.++
T Consensus       189 ~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~ei  268 (285)
T d1wdya_         189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI  268 (285)
T ss_dssp             HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            3444566777788888888899999999999999999999999999999997 4778774  469999999999999999


Q ss_pred             HHHHHHcCCCCCccCc
Q psy15272         87 AKVLLRHGANPDLRDE  102 (121)
Q Consensus        87 ~~~L~~~~~~~~~~~~  102 (121)
                      +++|++.|++++.+|.
T Consensus       269 v~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         269 AELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHHSSCSCCSSC
T ss_pred             HHHHHHCCCCCCcccC
Confidence            9999999999999874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3e-18  Score=107.93  Aligned_cols=101  Identities=28%  Similarity=0.369  Sum_probs=84.4

Q ss_pred             HHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCHH
Q psy15272          8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPS   85 (121)
Q Consensus         8 ~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~~   85 (121)
                      +||+.||..|+.+.|..++ +.|.+++..|..|.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..|+.+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll-~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHH-HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             ChHHHHHHCcCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            5899999999997776666 56899999999999999999999999999999999998874  45899999999999999


Q ss_pred             HHHHHHHcCCCCCccCcCCCCHHH
Q psy15272         86 VAKVLLRHGANPDLRDEDGKTPLD  109 (121)
Q Consensus        86 ~~~~L~~~~~~~~~~~~~g~tpl~  109 (121)
                      ++++|+..+.+.........+++.
T Consensus        81 ~~~~Ll~~~~~~~~~~~~~~~~~~  104 (408)
T d1n11a_          81 MVKLLLENNANPNLATTAGHTPLH  104 (408)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred             HHHHHHHhhhccccccccccchhh
Confidence            999998776655444444444433

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.5e-18  Score=91.10  Aligned_cols=87  Identities=18%  Similarity=0.191  Sum_probs=72.0

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCc-hHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHH
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQ-TLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAAC   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~   80 (121)
                      ..+.++++ ++..|+.+ +.++|.+.|.+++..+..+. +|||+|+..|+.+++++|++.|++++  +..|.||||+|+.
T Consensus        34 ~~g~t~l~-~a~~g~~~-~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~  111 (125)
T d1bi7b_          34 SYGRRPIQ-VMMMGSAR-VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE  111 (125)
T ss_dssp             SSSCCTTT-SSCTTCHH-HHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH
T ss_pred             cccccccc-cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHH
Confidence            44555555 45678775 45667778999998888765 69999999999999999999999887  4459999999999


Q ss_pred             hCCHHHHHHHHH
Q psy15272         81 FGRPSVAKVLLR   92 (121)
Q Consensus        81 ~~~~~~~~~L~~   92 (121)
                      .|+.+++++|+.
T Consensus       112 ~g~~~~v~~Lls  123 (125)
T d1bi7b_         112 LGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHSS
T ss_pred             cCCHHHHHHHHh
Confidence            999999999874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-18  Score=101.50  Aligned_cols=87  Identities=22%  Similarity=0.199  Sum_probs=61.6

Q ss_pred             chHHHHHHHHhCChHHHH---HHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHH
Q psy15272          6 PKRQLIECIRSKDTDALI---ETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAAC   80 (121)
Q Consensus         6 ~~~~l~~a~~~~~~~~v~---~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~   80 (121)
                      +.++||.|+..|+.+.+.   +.+...+.+++.+|..|+||||+|+..++.+++++|++.|++++.  ..|.|||++++.
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~   81 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE   81 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            567899999999865444   445567889999999999999999999999999999999987653  335555555555


Q ss_pred             hCCHHHHHHHHH
Q psy15272         81 FGRPSVAKVLLR   92 (121)
Q Consensus        81 ~~~~~~~~~L~~   92 (121)
                      .+..++++.|+.
T Consensus        82 ~~~~~~~~~l~~   93 (221)
T d1iknd_          82 QGCLASVGVLTQ   93 (221)
T ss_dssp             HTCHHHHHHHHH
T ss_pred             cccccccchhhh
Confidence            444444444433

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=5.1e-17  Score=94.26  Aligned_cols=86  Identities=17%  Similarity=0.058  Sum_probs=74.8

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHh
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACF   81 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~   81 (121)
                      ..+.++++.++..+....+ ..+...+.+++..|..|.||||+|+..|+.++++.|++.|++++  +..|.||||+|++.
T Consensus       121 ~~~~t~l~~~~~~~~~~~~-~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~  199 (209)
T d1ot8a_         121 NSGKTALHWAAAVNNTEAV-NILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASER  199 (209)
T ss_dssp             TTSCBHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCcchhhcccCcceee-eeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            4456788999999988666 55556688999999999999999999999999999999999887  44599999999999


Q ss_pred             CCHHHHHHH
Q psy15272         82 GRPSVAKVL   90 (121)
Q Consensus        82 ~~~~~~~~L   90 (121)
                      |+.+++++|
T Consensus       200 ~~~~iv~lL  208 (209)
T d1ot8a_         200 LHHDIVRLL  208 (209)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHhhc
Confidence            999999976

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=3.9e-16  Score=86.58  Aligned_cols=83  Identities=27%  Similarity=0.380  Sum_probs=69.1

Q ss_pred             hHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCccHHHHHHHhCCH
Q psy15272          7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRP   84 (121)
Q Consensus         7 ~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~g~t~l~~a~~~~~~   84 (121)
                      ...++.++.....+.+ +.+...+.+.+.++..|+||||+|+..|+.+++++|++.|++++  +..|.||||+|+..|+.
T Consensus        68 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          68 RTPLHMAASEGHANIV-EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             CCHHHHHHHHTCHHHH-HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccccccccccccceee-ecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCH
Confidence            3445566666666544 44556678888899999999999999999999999999999887  45599999999999999


Q ss_pred             HHHHHH
Q psy15272         85 SVAKVL   90 (121)
Q Consensus        85 ~~~~~L   90 (121)
                      +++++|
T Consensus       147 eiv~lL  152 (153)
T d1awcb_         147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.68  E-value=3.4e-18  Score=106.54  Aligned_cols=83  Identities=16%  Similarity=0.063  Sum_probs=68.9

Q ss_pred             cccCCCchHHHHHHHcCCHHHHHH---HHHcCCCCCCC--CCccHHHHHHHhCCHHHHHHHHHcCCCCCccC--cCCCCH
Q psy15272         35 FMDDVGQTLLNWASAFGTQEMVEF---LCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANPDLRD--EDGKTP  107 (121)
Q Consensus        35 ~~~~~~~~~l~~a~~~~~~~~~~~---l~~~~~~~~~~--~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~--~~g~tp  107 (121)
                      .++..|.|||++|+..|+.++++.   |++.|++++..  .|+||||+|+..|+.+++++|++.|++++.++  ..|.||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            456678999999999999877665   68889888744  48999999999999999999999999998765  468999


Q ss_pred             HHHHHhhcccccC
Q psy15272        108 LDKARERVDEGHR  120 (121)
Q Consensus       108 l~~a~~~~~~~~~  120 (121)
                      ||+|++.   ||.
T Consensus       165 L~~Aa~~---g~~  174 (346)
T d2ajaa1         165 FRLAAEN---GHL  174 (346)
T ss_dssp             HHHHHHT---TCH
T ss_pred             hHHHHHH---hhH
Confidence            9999999   654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.2e-16  Score=88.90  Aligned_cols=76  Identities=32%  Similarity=0.407  Sum_probs=68.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHH----cCCCCC--CCCCccHHHHHHHhCCHHHHHHHHHcCCCCCccCcCCCCHHHHHH
Q psy15272         39 VGQTLLNWASAFGTQEMVEFLCE----RGADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR  112 (121)
Q Consensus        39 ~~~~~l~~a~~~~~~~~~~~l~~----~~~~~~--~~~g~t~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~g~tpl~~a~  112 (121)
                      +|+||||+|+..|+.++++.|++    .|++++  +..|+||||+|+..|+.+++++|++.|++.+..+..+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            58999999999999999988874    677776  456999999999999999999999999999999999999999987


Q ss_pred             hh
Q psy15272        113 ER  114 (121)
Q Consensus       113 ~~  114 (121)
                      ..
T Consensus        82 ~~   83 (228)
T d1k1aa_          82 EH   83 (228)
T ss_dssp             HT
T ss_pred             cc
Confidence            65

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-14  Score=79.74  Aligned_cols=90  Identities=23%  Similarity=0.284  Sum_probs=72.1

Q ss_pred             CCchHHHHHHHHhCChHHHHHHHHhCCCCCccccCCCchHHHHHHHcCCHHHHHHHHHcCC-CCC--CCCCccHHHHHHH
Q psy15272          4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVN--KGQRSSSLHYAAC   80 (121)
Q Consensus         4 ~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~-~~~--~~~g~t~l~~a~~   80 (121)
                      ..+..+++.++..+..+.+.. +...+.+++..+..|.+|+++|+..+..++++.|++.+. +..  +..|.||||+|+.
T Consensus        64 ~~~~~~l~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~  142 (156)
T d1ihba_          64 RTGFAVIHDAARAGFLDTLQT-LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL  142 (156)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH
T ss_pred             ccCcccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHH
Confidence            344566777777777755544 345567778888889999999999999999999998875 444  4558999999999


Q ss_pred             hCCHHHHHHHHHcC
Q psy15272         81 FGRPSVAKVLLRHG   94 (121)
Q Consensus        81 ~~~~~~~~~L~~~~   94 (121)
                      .++.+++++|+++|
T Consensus       143 ~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         143 YGRNEVVSLMQANG  156 (156)
T ss_dssp             TTCHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHhcC
Confidence            99999999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.6e-15  Score=92.62  Aligned_cols=83  Identities=22%  Similarity=0.218  Sum_probs=66.7

Q ss_pred             CCCCCccc-cCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCccHHHHHHHhCCH-------HHHHHHHHcCCCCC
Q psy15272         29 GGVEVNFM-DDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP-------SVAKVLLRHGANPD   98 (121)
Q Consensus        29 ~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--~~g~t~l~~a~~~~~~-------~~~~~L~~~~~~~~   98 (121)
                      .+.+++.. |..|+||||+|+..|+.++++.|++.|++++.  ..|.||||.|+..++.       ++++++   ...+.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l---~~~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL---YPCLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH---GGGGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH---hhhhh
Confidence            46677755 89999999999999999999999999998874  4499999999986542       334443   34567


Q ss_pred             ccCcCCCCHHHHHHhh
Q psy15272         99 LRDEDGKTPLDKARER  114 (121)
Q Consensus        99 ~~~~~g~tpl~~a~~~  114 (121)
                      .+|..|.||+|.++..
T Consensus       172 ~~d~~g~t~lh~~~~~  187 (301)
T d1sw6a_         172 LEDSMNRTILHHIIIT  187 (301)
T ss_dssp             EECTTCCCHHHHHHHH
T ss_pred             hcccccCCHHHHHHHH
Confidence            7888999999988765