Psyllid ID: psy15305

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
SSTPQSKSPVDKDTSTKPEKPAKTKPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSSDQCFIGSFSSSIPYFTR
cccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccccEEEEEEEcccccEEEEEccccccccccccccEEEEEEcccccccccccccEEEEEEEccccEEEEccccccEEEccccccccccccc
cccccccccccHHHHHHHHHHHHcccHHcccccccccccccccHHHccEEEEEEEEEEEcccccccEEEEEEccccccEEEEEcccccccHHHHcccEEEEEccEccEEEccEEEccEEcEEEccccEEEcEcccccEEEccccccccccccc
sstpqskspvdkdtstkpekpaktkpakaaapkpsdkdegpvdigrldLRVGKiieaskhpdadslyvekvelgepaprtvVSGLVKFVPIEQMQNRMVVLLCNlkpakmrgvtsEAMVMCastpdkveilappssdqcfigsfsssipyftr
sstpqskspvdkdtstkpekpaktkpakaaapkpsdkdegpvdIGRLDLRVGKIIeaskhpdadslyVEKVElgepaprtVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAppssdqcfigsfsssipyftr
SSTPQSKSPVDKDTstkpekpaktkpakaaapkpsdkdeGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSSDQCFIGSFSSSIPYFTR
*******************************************IGRLDLRVGKIIEA******DSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEIL******QCFIGSF*********
*****************************************VDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSSDQCFIGSFSSSI*****
****************************************PVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSSDQCFIGSFSSSIPYFTR
*************************************DEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSSDQCFIGSFSSS******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSTPQSKSPVDKDTSTKPEKPAKTKPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSSDQCFIGSFSSSIPYFTR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query153 2.2.26 [Sep-21-2011]
P31230310 Aminoacyl tRNA synthase c yes N/A 0.640 0.316 0.775 1e-40
Q12904312 Aminoacyl tRNA synthase c yes N/A 0.647 0.317 0.757 1e-40
O54873359 Aminoacyl tRNA synthase c yes N/A 0.686 0.292 0.703 2e-40
Q20970917 Methionine--tRNA ligase, yes N/A 0.614 0.102 0.723 7e-38
Q5ZJ08527 Tyrosine--tRNA ligase, cy no N/A 0.751 0.218 0.582 6e-33
Q6TGS6529 Tyrosine--tRNA ligase, cy no N/A 0.895 0.258 0.510 2e-32
Q9ZTS1801 Probable methionine--tRNA yes N/A 0.862 0.164 0.525 6e-32
Q29465528 Tyrosine--tRNA ligase, cy no N/A 0.830 0.240 0.529 2e-31
Q5R8T5528 Tyrosine--tRNA ligase, cy no N/A 0.843 0.244 0.503 5e-31
P54577528 Tyrosine--tRNA ligase, cy no N/A 0.843 0.244 0.503 5e-31
>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2 Back     alignment and function desciption
 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/98 (77%), Positives = 87/98 (88%)

Query: 38  DEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNR 97
           D  P+D  RLDLR+G I+ A KHPDADSLYVE+V++GE APRTVVSGLV  VP+EQMQNR
Sbjct: 144 DSKPIDASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNR 203

Query: 98  MVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
           MVVLLCNLKPAKMRGV S+AMVMCAS+P+KVEILAPP+
Sbjct: 204 MVVLLCNLKPAKMRGVLSQAMVMCASSPEKVEILAPPN 241
Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion. Modulates endothelial cell responses by degrading HIF-1A through interaction with PSMA7.
Mus musculus (taxid: 10090)
>sp|Q12904|AIMP1_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2 Back     alignment and function description
>sp|O54873|AIMP1_CRIGR Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1 Back     alignment and function description
>sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJ08|SYYC_CHICK Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1 Back     alignment and function description
>sp|Q6TGS6|SYYC_DANRE Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2 Back     alignment and function description
>sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2 Back     alignment and function description
>sp|Q29465|SYYC_BOVIN Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4 Back     alignment and function description
>sp|Q5R8T5|SYYC_PONAB Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3 Back     alignment and function description
>sp|P54577|SYYC_HUMAN Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
195151373 295 GL10404 [Drosophila persimilis] gi|19411 0.699 0.362 0.785 6e-44
198459808 295 GA20918 [Drosophila pseudoobscura pseudo 0.699 0.362 0.775 2e-43
195122396 291 GI20611 [Drosophila mojavensis] gi|19391 0.692 0.364 0.773 2e-43
195380323 289 GJ21051 [Drosophila virilis] gi|19414371 0.640 0.339 0.806 1e-42
194863345 320 GG10606 [Drosophila erecta] gi|190662261 0.699 0.334 0.747 2e-42
195332630 320 GM20651 [Drosophila sechellia] gi|194124 0.699 0.334 0.747 3e-42
195057926 296 GH22683 [Drosophila grimshawi] gi|193899 0.647 0.334 0.777 6e-42
312378417 321 hypothetical protein AND_10052 [Anophele 0.620 0.295 0.810 6e-41
442754803 309 Putative trna-binding protein [Ixodes ri 0.640 0.317 0.795 1e-40
24651924 323 CG8235 [Drosophila melanogaster] gi|2164 0.620 0.294 0.789 1e-40
>gi|195151373|ref|XP_002016622.1| GL10404 [Drosophila persimilis] gi|194110469|gb|EDW32512.1| GL10404 [Drosophila persimilis] Back     alignment and taxonomy information
 Score =  182 bits (461), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 97/107 (90%)

Query: 30  AAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFV 89
           AA KP+   E PVD+GRLDLRVGKIIE  +HPDADSLY+EK++ GE APRTVVSGLVKFV
Sbjct: 121 AAEKPTPVAEAPVDVGRLDLRVGKIIEVGRHPDADSLYLEKIDCGEAAPRTVVSGLVKFV 180

Query: 90  PIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSS 136
           P+E+MQNRMVV++CNLKPAKMRGVTSEAMVMCASTPDKVE+L+PP+ 
Sbjct: 181 PLEEMQNRMVVVMCNLKPAKMRGVTSEAMVMCASTPDKVEVLSPPAG 227

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|198459808|ref|XP_001361502.2| GA20918 [Drosophila pseudoobscura pseudoobscura] gi|198136815|gb|EAL26080.2| GA20918 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195122396|ref|XP_002005697.1| GI20611 [Drosophila mojavensis] gi|193910765|gb|EDW09632.1| GI20611 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195380323|ref|XP_002048920.1| GJ21051 [Drosophila virilis] gi|194143717|gb|EDW60113.1| GJ21051 [Drosophila virilis] Back     alignment and taxonomy information
>gi|194863345|ref|XP_001970394.1| GG10606 [Drosophila erecta] gi|190662261|gb|EDV59453.1| GG10606 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195332630|ref|XP_002033000.1| GM20651 [Drosophila sechellia] gi|194124970|gb|EDW47013.1| GM20651 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195057926|ref|XP_001995350.1| GH22683 [Drosophila grimshawi] gi|193899556|gb|EDV98422.1| GH22683 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|312378417|gb|EFR24998.1| hypothetical protein AND_10052 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|442754803|gb|JAA69561.1| Putative trna-binding protein [Ixodes ricinus] Back     alignment and taxonomy information
>gi|24651924|ref|NP_610426.2| CG8235 [Drosophila melanogaster] gi|21645574|gb|AAF59019.2| CG8235 [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
FB|FBgn0033351323 CG8235 [Drosophila melanogaste 0.620 0.294 0.8 1.4e-39
UNIPROTKB|F1NLE7318 AIMP1 "Uncharacterized protein 0.614 0.295 0.819 8.9e-38
UNIPROTKB|Q3ZBX5322 SCYE1 "Uncharacterized protein 0.620 0.295 0.810 2.4e-37
UNIPROTKB|E2QXI3321 AIMP1 "Uncharacterized protein 0.620 0.295 0.810 3e-37
UNIPROTKB|Q4G079315 Aimp1 "Small inducible cytokin 0.620 0.301 0.8 3e-37
UNIPROTKB|Q12904312 AIMP1 "Aminoacyl tRNA synthase 0.620 0.304 0.778 1e-36
MGI|MGI:102774310 Aimp1 "aminoacyl tRNA syntheta 0.620 0.306 0.789 1e-36
ZFIN|ZDB-GENE-060825-144315 aimp1 "aminoacyl tRNA syntheta 0.614 0.298 0.797 1e-36
UNIPROTKB|I3LFC4319 AIMP1 "Uncharacterized protein 0.614 0.294 0.797 1.3e-36
WB|WBGene00003415917 mars-1 [Caenorhabditis elegans 0.633 0.105 0.701 1e-33
FB|FBgn0033351 CG8235 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 76/95 (80%), Positives = 91/95 (95%)

Query:    41 PVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVV 100
             PVD+GRLDLRVGKI+E  +HPDADSLY+EK++ GE APRTVVSGLVKFVP+E+MQNR+VV
Sbjct:   160 PVDVGRLDLRVGKIVEVGRHPDADSLYLEKIDCGEAAPRTVVSGLVKFVPLEEMQNRLVV 219

Query:   101 LLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
             ++CNLKPAKMRGVTSEAMVMCASTP+KVE+L+PP+
Sbjct:   220 VMCNLKPAKMRGVTSEAMVMCASTPEKVEVLSPPA 254
GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=ISS
GO:0000049 "tRNA binding" evidence=IEA
UNIPROTKB|F1NLE7 AIMP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBX5 SCYE1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXI3 AIMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q4G079 Aimp1 "Small inducible cytokine subfamily E, member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q12904 AIMP1 "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:102774 Aimp1 "aminoacyl tRNA synthetase complex-interacting multifunctional protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060825-144 aimp1 "aminoacyl tRNA synthetase complex-interacting multifunctional protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LFC4 AIMP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
WB|WBGene00003415 mars-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P31230AIMP1_MOUSENo assigned EC number0.77550.64050.3161yesN/A
O54873AIMP1_CRIGRNo assigned EC number0.70370.68620.2924yesN/A
Q9ZTS1SYM_ORYSJ6, ., 1, ., 1, ., 1, 00.52590.86270.1647yesN/A
Q12904AIMP1_HUMANNo assigned EC number0.75750.64700.3173yesN/A
Q9P6K7YLF4_SCHPONo assigned EC number0.51300.66660.2266yesN/A
P46672G4P1_YEASTNo assigned EC number0.52770.67320.2739yesN/A
Q9SVN5SYM_ARATH6, ., 1, ., 1, ., 1, 00.52940.76470.1468yesN/A
Q20970SYMC_CAEEL6, ., 1, ., 1, ., 1, 00.72340.61430.1025yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
cd02799105 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-doma 9e-55
PLN02610801 PLN02610, PLN02610, probable methionyl-tRNA synthe 2e-52
cd0215399 cd02153, tRNA_bindingDomain, The tRNA binding doma 2e-36
pfam0158895 pfam01588, tRNA_bind, Putative tRNA binding domain 3e-35
PRK12267648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 9e-31
PRK00133673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 5e-29
cd02800105 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-doma 5e-26
cd02798107 cd02798, tRNA_bind_CsaA, tRNA-binding-domain-conta 4e-24
COG0073123 COG0073, ARC1, EMAP domain [General function predi 1e-23
TIGR00399137 TIGR00399, metG_C_term, methionyl-tRNA synthetase 6e-20
PRK10089112 PRK10089, PRK10089, tRNA-binding protein; Provisio 2e-15
cd02796103 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain- 6e-10
TIGR00472 797 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase 1e-09
TIGR02222107 TIGR02222, chap_CsaA, export-related chaperone pro 3e-09
PRK00629 791 PRK00629, pheT, phenylalanyl-tRNA synthetase subun 6e-08
COG2517219 COG2517, COG2517, Predicted RNA-binding protein co 3e-04
>gnl|CDD|239198 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-domain-containing EMAP2-like proteins Back     alignment and domain information 
 Score =  167 bits (425), Expect = 9e-55
 Identities = 68/100 (68%), Positives = 82/100 (82%), Gaps = 2/100 (2%)

Query: 42  VDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVL 101
           VD  RLD+RVGKI++  KHPDADSLYVE+++LGE  PRT+VSGLVKFVP+EQMQNR+VV+
Sbjct: 1   VDPSRLDIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVPLEQMQNRLVVV 60

Query: 102 LCNLKPAKMRGVTSEAMVMCASTPD--KVEILAPPSSDQC 139
           LCNLKP KMRGV S+ MV+CAS  D  KVE+L PP   + 
Sbjct: 61  LCNLKPRKMRGVKSQGMVLCASNADHEKVELLEPPEGAKP 100

This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain. Length = 105
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known as the Myf domain in literature Back     alignment and domain information
>gnl|CDD|216589 pfam01588, tRNA_bind, Putative tRNA binding domain Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|239199 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins Back     alignment and domain information
>gnl|CDD|239197 cd02798, tRNA_bind_CsaA, tRNA-binding-domain-containing CsaA-like proteins Back     alignment and domain information
>gnl|CDD|223151 COG0073, ARC1, EMAP domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal region/beta chain Back     alignment and domain information
>gnl|CDD|182232 PRK10089, PRK10089, tRNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|239196 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain Back     alignment and domain information
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|131277 TIGR02222, chap_CsaA, export-related chaperone protein CsaA Back     alignment and domain information
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|225315 COG2517, COG2517, Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 153
KOG2241|consensus255 99.96
TIGR02222107 chap_CsaA export-related chaperone CsaA. This mode 99.94
cd02799105 tRNA_bind_EMAP-II_like tRNA-binding-domain-contain 99.93
cd02798107 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA 99.93
COG0073123 ARC1 EMAP domain [General function prediction only 99.93
PRK10089112 tRNA-binding protein; Provisional 99.93
PLN02610801 probable methionyl-tRNA synthetase 99.92
PF0158895 tRNA_bind: Putative tRNA binding domain; InterPro: 99.92
cd02800105 tRNA_bind_EcMetRS_like tRNA-binding-domain-contain 99.92
TIGR00399137 metG_C_term methionyl-tRNA synthetase C-terminal r 99.91
cd0215399 tRNA_bindingDomain The tRNA binding domain is also 99.89
PRK00133673 metG methionyl-tRNA synthetase; Reviewed 99.87
PRK12267648 methionyl-tRNA synthetase; Reviewed 99.86
cd02796103 tRNA_bind_bactPheRS tRNA-binding-domain-containing 99.82
TIGR00472 798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 99.69
PRK00629 791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 99.66
COG2517219 Predicted RNA-binding protein containing a C-termi 99.38
TIGR02306 341 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me 99.34
PHA02142 366 putative RNA ligase 96.18
>KOG2241|consensus Back     alignment and domain information 
Probab=99.96  E-value=1.7e-29  Score=210.62  Aligned_cols=114  Identities=63%  Similarity=1.010  Sum_probs=106.5

Q ss_pred             CCCCCCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceec
Q psy15305         36 DKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTS  115 (153)
Q Consensus        36 ~~~e~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~S  115 (153)
                      ...+...++++||||||+|+++.+||++|.||+.+||+|+.+.||||||+..|++.+++.++++++++||+|++|||+.|
T Consensus        86 ~~~~~~p~~~~LDiRvG~Ivka~kHpdADsLYve~IdvgE~~PRTVvSGLvk~vpleemq~R~VvvlcNLKPakmRgv~S  165 (255)
T KOG2241|consen   86 PMMEAGPDVSLLDIRVGKIVKAGKHPDADSLYVEEIDVGEAEPRTVVSGLVKHVPLEEMQNRLVVVLCNLKPAKMRGVKS  165 (255)
T ss_pred             CcccCCCCcceeeEEEeEEEEecccCCcceeEEEEeeecccccceeehhhHhhCCHHHHhCCeEEEEecccccccccccc
Confidence            44566678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeecccCCCc--eEEecCC----CCCeeeeCcccCCCCC
Q psy15305        116 EAMVMCASTPDK--VEILAPP----SSDQCFIGSFSSSIPY  150 (153)
Q Consensus       116 eGMlLCs~~e~g--i~lL~~p----~g~~~~~g~~~~~~~~  150 (153)
                      +||+||+.++++  |++|.||    +|+++.+++|. -.|-
T Consensus       166 ~gMvlcaSs~d~~~VE~l~pP~gs~pGdRv~fegfe-gePd  205 (255)
T KOG2241|consen  166 QGMVLCASSPDKSVVEPLAPPAGSKPGDRVTFEGFE-GEPD  205 (255)
T ss_pred             ceeEEecCCcccceeeeccCCCCCCCCCeeeecCCC-CCcc
Confidence            999999999998  9999997    58999999998 6553

>TIGR02222 chap_CsaA export-related chaperone CsaA Back     alignment and domain information
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins Back     alignment and domain information
>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins Back     alignment and domain information
>COG0073 ARC1 EMAP domain [General function prediction only] Back     alignment and domain information
>PRK10089 tRNA-binding protein; Provisional Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II Back     alignment and domain information
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins Back     alignment and domain information
>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain Back     alignment and domain information
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only] Back     alignment and domain information
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family Back     alignment and domain information
>PHA02142 putative RNA ligase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
1euj_A166 A Novel Anti-Tumor Cytokine Contains A Rna-Binding 8e-40
1e7z_A174 Crystal Structure Of The Emap2RNA BINDING DOMAIN OF 8e-40
1fl0_A171 Crystal Structure Of The Emap2RNA-Binding Domain Of 4e-39
1ntg_A172 Crystal Structure Of The Emap Ii-Like Cytokine Rele 2e-30
1rqg_A722 Methionyl-Trna Synthetase From Pyrococcus Abyssi Le 9e-21
1mkh_A107 C-Terminal Domain Of Methionyl-Trna Synthetase From 2e-20
3ers_X118 Crystal Structure Of E. Coli Trbp111 Length = 118 8e-19
1pyb_A111 Crystal Structure Of Aquifex Aeolicus Trbp111: A St 5e-10
2cwp_A112 Crystal Structure Of Metrs Related Protein From Pyr 9e-07
2rhs_B 800 Phers From Staphylococcus Haemolyticus- Rational Pr 4e-04
2e8g_A241 The Structure Of Protein From P. Horikoshii At 1.7 4e-04
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif Present In Aminoacyl-Trna Synthetases Length = 166 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (401), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 74/96 (77%), Positives = 87/96 (90%)
Query: 41  PVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVV 100
           P+D+ RLDLR+G II A KHPDADSLYVE+V++GE APRTVVSGLV  VP+EQMQNRMV+
Sbjct: 3   PIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVI 62
Query: 101 LLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSS 136
           LLCNLKPAKMRGV S+AMVMCAS+P+K+EILAPP+ 
Sbjct: 63  LLCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNG 98
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 174 Back     alignment and structure
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 171 Back     alignment and structure
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released From Human Tyrosyl-Trna Synthetase Length = 172 Back     alignment and structure
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 Back     alignment and structure
>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 107 Back     alignment and structure
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111 Length = 118 Back     alignment and structure
>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture- Specific Trna Binding Protein Length = 111 Back     alignment and structure
>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus Horikoshii Length = 112 Back     alignment and structure
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 800 Back     alignment and structure
>pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7 Angstrom Resolution Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
1fl0_A171 Endothelial-monocyte activating polypeptide II; RN 1e-50
1ntg_A172 Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas 3e-45
1pxf_A111 Hypothetical protein YGJH; oligonucleotide-oligosa 1e-40
1mkh_A107 Metrs;, C-terminal domain of methionyl-tRNA synthe 8e-40
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 1e-35
1pyb_A111 Methionyl-tRNA synthetase beta subunit; oligonucle 8e-30
2cwp_A112 Metrs related protein; structural GEN riken struct 3e-28
1gd7_A109 CSAA protein; oligonucleotide-binding fold, functi 3e-25
3g48_A112 Chaperone CSAA; structural genomics, niaid structu 3e-24
2q2h_A131 AGR_C_4014P, secretion chaperone, phage-display de 4e-24
2q2i_A116 AGR_C_4014P, secretion chaperone; beta barrel, OB 1e-22
2nzh_A113 Protein CSAA; beta barrel, oligonucleotide/oligosa 2e-22
2e8g_A241 Hypothetical protein PH0536; oligonucleotide/oligo 6e-19
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 5e-10
3bu2_A199 Putative tRNA-binding protein; structural genomics 6e-08
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 4e-06
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 7e-05
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Length = 171 Back     alignment and structure
 Score =  158 bits (402), Expect = 1e-50
 Identities = 73/94 (77%), Positives = 86/94 (91%)

Query: 42  VDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVL 101
           +D+ RLDLR+G II A KHPDADSLYVE+V++GE APRTVVSGLV  VP+EQMQNRMV+L
Sbjct: 1   IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 60

Query: 102 LCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
           LCNLKPAKMRGV S+AMVMCAS+P+K+EILAPP+
Sbjct: 61  LCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPN 94
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Length = 172 Back     alignment and structure
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} SCOP: b.40.4.4 PDB: 3ers_X Length = 111 Back     alignment and structure
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 Length = 107 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 Length = 111 Back     alignment and structure
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii} Length = 112 Back     alignment and structure
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4 Length = 109 Back     alignment and structure
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} Length = 112 Back     alignment and structure
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str} Length = 131 Back     alignment and structure
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str} Length = 116 Back     alignment and structure
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A Length = 113 Back     alignment and structure
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} Length = 241 Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 Back     alignment and structure
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} Length = 199 Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785 Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
1ntg_A172 Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas 99.97
1fl0_A171 Endothelial-monocyte activating polypeptide II; RN 99.97
3ers_X118 TRNA-binding protein YGJH; oligonucleotide-oligosa 99.97
1gd7_A109 CSAA protein; oligonucleotide-binding fold, functi 99.97
3g48_A112 Chaperone CSAA; structural genomics, niaid structu 99.97
1mkh_A107 Metrs;, C-terminal domain of methionyl-tRNA synthe 99.97
2q2h_A131 AGR_C_4014P, secretion chaperone, phage-display de 99.96
1pxf_A111 Hypothetical protein YGJH; oligonucleotide-oligosa 99.96
2q2i_A116 AGR_C_4014P, secretion chaperone; beta barrel, OB 99.96
2cwp_A112 Metrs related protein; structural GEN riken struct 99.96
2nzh_A113 Protein CSAA; beta barrel, oligonucleotide/oligosa 99.96
1pyb_A111 Methionyl-tRNA synthetase beta subunit; oligonucle 99.96
3bu2_A199 Putative tRNA-binding protein; structural genomics 99.89
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 99.89
2e8g_A241 Hypothetical protein PH0536; oligonucleotide/oligo 99.87
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 99.8
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 99.75
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 99.67
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Back     alignment and structure
Probab=99.97  E-value=6e-32  Score=213.62  Aligned_cols=110  Identities=57%  Similarity=0.972  Sum_probs=100.8

Q ss_pred             CCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceecccee
Q psy15305         40 GPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMV  119 (153)
Q Consensus        40 ~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeGMl  119 (153)
                      ...||.+++||||+|+++++||+||||++|+||+|+++.||||||+.|+|.+++|.|+++++++||++++|||+.|+|||
T Consensus         3 ~~~df~kl~irVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIvsG~~n~~~~eel~G~~Vvvl~nlkp~klrGv~S~GMv   82 (172)
T 1ntg_A            3 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGML   82 (172)
T ss_dssp             CCCCGGGSCEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEECCBCCEEETTEEECCEE
T ss_pred             cccCccEeCEEEEEEEEEEECCCCCccEEEEEEeCCCcEEEEEECCCCCCChHHHCCCEEEEEEeEcceeecceecCCEE
Confidence            45799999999999999999999999999999999867899999999999999999999999999999999999999999


Q ss_pred             ecccCCC---ceEEecC----CCCCeeeeCcccCCCC
Q psy15305        120 MCASTPD---KVEILAP----PSSDQCFIGSFSSSIP  149 (153)
Q Consensus       120 LCs~~e~---gi~lL~~----p~g~~~~~g~~~~~~~  149 (153)
                      |||.+|+   |+.+|.+    |.|+++.+++|.+..|
T Consensus        83 Lcs~~e~~~~~v~il~~~~~~~~G~~v~~~g~~~~~p  119 (172)
T 1ntg_A           83 LCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQP  119 (172)
T ss_dssp             CEEEEESSSEEEEECBCCBTCCTTCEEEETTCSSCCC
T ss_pred             eEecccccCCCeEEEECCCCCCCCCEEEeCCcCCCCC
Confidence            9999876   6767776    5799999999965555
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Back     alignment and structure
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4 Back     alignment and structure
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4 Back     alignment and structure
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 Back     alignment and structure
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str} Back     alignment and structure
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X Back     alignment and structure
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str} Back     alignment and structure
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A Back     alignment and structure
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 Back     alignment and structure
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 153
d1fl0a_164 b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId 7e-25
d1mkha_107 b.40.4.4 (A:) C-terminal domain of methionyl-tRNA 5e-24
d1pxfa_111 b.40.4.4 (A:) Structure-specific tRNA-binding prot 9e-23
d1pyba_107 b.40.4.4 (A:) Structure-specific tRNA-binding prot 1e-22
d1ntga_171 b.40.4.4 (A:) C-terminal domain of metazoan tyrosy 1e-22
d1gd7a_109 b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermo 2e-17
d1jjcb3113 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT 7e-08
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: EMAP II
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 7e-25
 Identities = 73/94 (77%), Positives = 86/94 (91%)

Query: 42  VDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVL 101
           +D+ RLDLR+G II A KHPDADSLYVE+V++GE APRTVVSGLV  VP+EQMQNRMV+L
Sbjct: 1   IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 60

Query: 102 LCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
           LCNLKPAKMRGV S+AMVMCAS+P+K+EILAPP+
Sbjct: 61  LCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPN 94
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 107 Back     information, alignment and structure
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Length = 111 Back     information, alignment and structure
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Length = 107 Back     information, alignment and structure
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Length = 109 Back     information, alignment and structure
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
d1mkha_107 C-terminal domain of methionyl-tRNA synthetase, Me 99.97
d1pyba_107 Structure-specific tRNA-binding protein TRBP111 {A 99.97
d1fl0a_164 EMAP II {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1pxfa_111 Structure-specific tRNA-binding protein TRBP111 {E 99.96
d1ntga_171 C-terminal domain of metazoan tyrosyl-tRNA synthet 99.95
d1gd7a_109 TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 99.95
d1jjcb3113 Domain B2 of PheRS-beta, PheT {Thermus thermophilu 99.84
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of methionyl-tRNA synthetase, MetRS-CD
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.97  E-value=6.4e-32  Score=196.83  Aligned_cols=102  Identities=45%  Similarity=0.748  Sum_probs=89.6

Q ss_pred             CCCCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceeccc
Q psy15305         38 DEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEA  117 (153)
Q Consensus        38 ~e~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeG  117 (153)
                      +.+++||.++|||||+|+++++||+||||++|+||+|+ +.|||+||+.|+|.++++.|+++++++||++++|||+.|||
T Consensus         2 ~I~~ddF~kldirVG~I~~~~~hp~adkL~~~~Vd~G~-~~~~Iv~G~~~~~~~e~liG~~v~~v~nlk~~kirGv~SeG   80 (107)
T d1mkha_           2 YVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQG   80 (107)
T ss_dssp             CCCHHHHHTSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEECC
T ss_pred             EEEhhHeeeeeEEEEEEEEEEecCCCCceEEEEEEcCC-eEEEEEEEeeeEEcCcccCCCEEEeecCCCcccCCCccCCE
Confidence            45678999999999999999999999999999999998 68999999999999999999999999999999999999999


Q ss_pred             eeecccCCCceEEecCCCCCeeeeC
Q psy15305        118 MVMCASTPDKVEILAPPSSDQCFIG  142 (153)
Q Consensus       118 MlLCs~~e~gi~lL~~p~g~~~~~g  142 (153)
                      ||||+.+++++.+|.+|.  .+++|
T Consensus        81 Ml~s~~e~~~~~ll~~~~--~~~~G  103 (107)
T d1mkha_          81 MLLAADDGERVALLMPDK--EVKLG  103 (107)
T ss_dssp             CBCEEECSSCEEECCCSS--CCCTT
T ss_pred             EEEEeecCCcEEEEECCC--CCCCC
Confidence            966666667788887753  34444
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure