Psyllid ID: psy15387

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
MGVIHWYYHQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS
cccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cccEHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHccccHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccc
MGVIHWYYHQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSdllssprqdenmKLELDARTETVKKIAKKVSNSLKKLERSIKKEedeiedghipaslrirkTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS
MGVIHWYYHQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDllssprqdeNMKLELDARTETVKKIAKkvsnslkklersikkeedeiedghipaslrirktQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAvetarvqtkkaivyqkkarms
MGVIHWYYHQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS
**VIHWYYHQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKA**********************************************************************STTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIV********
**********************************HDCFMDTVEDSRALIANIQEHVKAMRNL***********************TVKKIAKKVSNSLK**************************TQQSTTLHLLVEAITEFNQ**********************************************************DVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQ******
MGVIHWYYHQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS
MGVIHWYYHQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEED*****HIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQK*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGVIHWYYHQRIKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIxxxxxxxxxxxxxxxxxxxxxIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query273 2.2.26 [Sep-21-2011]
A8WVD0293 Syntaxin-1A OS=Caenorhabd N/A N/A 0.941 0.877 0.411 6e-49
O16000291 Syntaxin-1A homolog OS=Ca yes N/A 0.897 0.841 0.416 7e-48
Q24547291 Syntaxin-1A OS=Drosophila yes N/A 0.868 0.814 0.443 8e-47
Q16932290 Syntaxin OS=Aplysia calif N/A N/A 0.864 0.813 0.412 1e-44
P61265288 Syntaxin-1B OS=Rattus nor yes N/A 0.857 0.812 0.432 4e-44
P61264288 Syntaxin-1B OS=Mus muscul yes N/A 0.857 0.812 0.432 4e-44
P61266288 Syntaxin-1B OS=Homo sapie yes N/A 0.857 0.812 0.432 4e-44
P61268288 Syntaxin-1B OS=Ovis aries N/A N/A 0.857 0.812 0.432 4e-44
P61267288 Syntaxin-1B OS=Bos taurus yes N/A 0.857 0.812 0.432 4e-44
Q5R4L2288 Syntaxin-1A OS=Pongo abel no N/A 0.857 0.812 0.441 9e-44
>sp|A8WVD0|STX1A_CAEBR Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 PE=3 SV=1 Back     alignment and function desciption
 Score =  194 bits (493), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 107/260 (41%), Positives = 164/260 (63%), Gaps = 3/260 (1%)

Query: 12  IKALRVSCVMDQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPR 71
           +KA +     D  + +    ++Y + F + VE+ R  +  I  +V+ ++  HS +LS+P 
Sbjct: 9   LKAAQSEDEQDDDMHMETGNAQYMEEFFEQVEEIRGSVDIIANNVEEVKKKHSAILSNPV 68

Query: 72  QDENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTT 131
            D+  K ELD     +K+ A KV   LK +E +I  E DE + G   A LRIRKTQ ST 
Sbjct: 69  NDQKTKEELDELMAVIKRAANKVRGKLKLIENAI--EHDENQQGAGNADLRIRKTQHSTL 126

Query: 132 LHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIV 191
               VE +T++N+ Q DY+E+C+ RIQR + IA  ++ DE LEE++E GN   +F   I+
Sbjct: 127 SRRFVEVMTDYNKTQTDYRERCKGRIQRQLDIAGKQVGDEDLEEMIESGN-PGVFTQGII 185

Query: 192 TETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGE 251
           T+T +A++ L D++ RH +++KLE SI+EL D+F++MA+LVE QG+++D IE++V  A E
Sbjct: 186 TDTQQAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKE 245

Query: 252 AVETARVQTKKAIVYQKKAR 271
            V+ A   TKKA+ YQ KAR
Sbjct: 246 FVDRAVADTKKAVQYQSKAR 265
Plays a critical role in several secretory processes, including cuticle secretion and neurotransmitter release, and probably assists in neuronal membrane maturation or the final stages of neuronal differentiation. Essential for embryonic viability and development. Has a role in dauer formation and adult life span. Required for locomotion.
Caenorhabditis briggsae (taxid: 6238)
>sp|O16000|STX1A_CAEEL Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1 Back     alignment and function description
>sp|Q24547|STX1A_DROME Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1 Back     alignment and function description
>sp|Q16932|STX_APLCA Syntaxin OS=Aplysia californica PE=2 SV=1 Back     alignment and function description
>sp|P61265|STX1B_RAT Syntaxin-1B OS=Rattus norvegicus GN=Stx1b PE=1 SV=1 Back     alignment and function description
>sp|P61264|STX1B_MOUSE Syntaxin-1B OS=Mus musculus GN=Stx1b PE=1 SV=1 Back     alignment and function description
>sp|P61266|STX1B_HUMAN Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1 Back     alignment and function description
>sp|P61268|STX1B_SHEEP Syntaxin-1B OS=Ovis aries GN=STX1B PE=2 SV=1 Back     alignment and function description
>sp|P61267|STX1B_BOVIN Syntaxin-1B OS=Bos taurus GN=STX1B PE=1 SV=1 Back     alignment and function description
>sp|Q5R4L2|STX1A_PONAB Syntaxin-1A OS=Pongo abelii GN=STX1A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
328702494320 PREDICTED: syntaxin-1B-like [Acyrthosiph 0.901 0.768 0.612 2e-80
226468394298 Syntaxin 1A [Schistosoma japonicum] 0.882 0.808 0.440 2e-49
226483575298 Syntaxin 1A [Schistosoma japonicum] 0.882 0.808 0.440 3e-49
270014238331 Syntaxin 1A [Tribolium castaneum] 0.857 0.706 0.462 6e-49
241896910301 syntaxin 1A isoform 1 [Acyrthosiphon pis 0.857 0.777 0.453 1e-47
256074251261 syntaxin [Schistosoma mansoni] gi|353228 0.842 0.881 0.444 2e-47
345487373297 PREDICTED: syntaxin-1A-like [Nasonia vit 0.842 0.774 0.461 2e-47
2665349292 s-syntaxin [Doryteuthis pealeii] gi|2696 0.842 0.787 0.444 3e-47
268563943293 C. briggsae CBR-UNC-64 protein [Caenorha 0.941 0.877 0.411 4e-47
341889765293 CBN-UNC-64 protein [Caenorhabditis brenn 0.904 0.843 0.42 4e-47
>gi|328702494|ref|XP_001942998.2| PREDICTED: syntaxin-1B-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 153/250 (61%), Positives = 197/250 (78%), Gaps = 4/250 (1%)

Query: 27  LTITYSEYH--DCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDART 84
           L + YSEY   + F D +E  R  I  I+EHV  MR LH  LL  PRQDENMK ++D +T
Sbjct: 38  LDMQYSEYGYMEHFFDQIEQCRIKIRQIKEHVVLMRTLHGKLLLLPRQDENMKRDIDIKT 97

Query: 85  ETVKKIAKKVSNSLKKLERSIKKEEDEI--EDGHIPASLRIRKTQQSTTLHLLVEAITEF 142
           E VKK+ K+VS +LK LE+ I +EEDE   ++  + A+LRIRKTQ +TT+H+LVEA+ EF
Sbjct: 98  ENVKKMGKQVSTTLKGLEKQINQEEDESSGDNEQVSAALRIRKTQHATTIHMLVEALAEF 157

Query: 143 NQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALE 202
           N EQ+ YKEKCEER+Q+VVSIARAEIS+++ +EL+ QGNY+++FN +I+ ETLEAR  L+
Sbjct: 158 NAEQIIYKEKCEERMQKVVSIARAEISNDQFDELVSQGNYSAVFNGNIIAETLEARSTLQ 217

Query: 203 DVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKK 262
           +VQ RH ELLKLEKSIQELRD+FVEMA+LVE+QGDII+SIE HV+ AGEA E A+V+TKK
Sbjct: 218 EVQDRHLELLKLEKSIQELRDMFVEMAMLVEKQGDIINSIEQHVLRAGEAAENAKVETKK 277

Query: 263 AIVYQKKARM 272
           A++Y  KARM
Sbjct: 278 AVIYTSKARM 287

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|226468394|emb|CAX69874.1| Syntaxin 1A [Schistosoma japonicum] Back     alignment and taxonomy information
>gi|226483575|emb|CAX74088.1| Syntaxin 1A [Schistosoma japonicum] Back     alignment and taxonomy information
>gi|270014238|gb|EFA10686.1| Syntaxin 1A [Tribolium castaneum] Back     alignment and taxonomy information
>gi|241896910|ref|NP_001155922.1| syntaxin 1A isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|256074251|ref|XP_002573439.1| syntaxin [Schistosoma mansoni] gi|353228942|emb|CCD75113.1| putative syntaxin [Schistosoma mansoni] Back     alignment and taxonomy information
>gi|345487373|ref|XP_001604855.2| PREDICTED: syntaxin-1A-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|2665349|emb|CAA74913.1| s-syntaxin [Doryteuthis pealeii] gi|2696963|dbj|BAA24019.1| syntaxin [Doryteuthis pealeii] Back     alignment and taxonomy information
>gi|268563943|ref|XP_002647050.1| C. briggsae CBR-UNC-64 protein [Caenorhabditis briggsae] gi|166979700|sp|A8WVD0.1|STX1A_CAEBR RecName: Full=Syntaxin-1A; AltName: Full=Uncoordinated protein 64 Back     alignment and taxonomy information
>gi|341889765|gb|EGT45700.1| CBN-UNC-64 protein [Caenorhabditis brenneri] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
FB|FBgn0013343291 Syx1A "Syntaxin 1A" [Drosophil 0.868 0.814 0.443 2.4e-51
UNIPROTKB|A8WVD0293 unc-64 "Syntaxin-1A" [Caenorha 0.941 0.877 0.411 9.5e-50
WB|WBGene00006798291 unc-64 [Caenorhabditis elegans 0.934 0.876 0.407 1.4e-48
UNIPROTKB|O16000291 unc-64 "Syntaxin-1A homolog" [ 0.934 0.876 0.407 1.4e-48
UNIPROTKB|Q16623288 STX1A "Syntaxin-1A" [Homo sapi 0.901 0.854 0.428 9.8e-48
UNIPROTKB|Q5R4L2288 STX1A "Syntaxin-1A" [Pongo abe 0.901 0.854 0.428 9.8e-48
RGD|69430288 Stx1a "syntaxin 1A (brain)" [R 0.901 0.854 0.428 9.8e-48
UNIPROTKB|P32851288 Stx1a "Syntaxin-1A" [Rattus no 0.901 0.854 0.428 9.8e-48
MGI|MGI:109355288 Stx1a "syntaxin 1A (brain)" [M 0.901 0.854 0.428 1.2e-47
UNIPROTKB|P32850288 STX1A "Syntaxin-1A" [Bos tauru 0.901 0.854 0.424 1.6e-47
FB|FBgn0013343 Syx1A "Syntaxin 1A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 107/241 (44%), Positives = 164/241 (68%)

Query:    31 YSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKI 90
             +  Y D F   VE+ R +I  +Q++V+ ++  HS +LS+P+ DE  K EL+     +KK 
Sbjct:    29 HDSYMDDFFAQVEEIRGMIDKVQDNVEEVKKKHSAILSAPQTDEKTKQELEDLMADIKKN 88

Query:    91 AKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYK 150
             A +V   LK +E++I++EE + +     A LRIRKTQ ST     VE +TE+N+ Q DY+
Sbjct:    89 ANRVRGKLKGIEQNIEQEEQQNKSS---ADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYR 145

Query:   151 EKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQE 210
             E+C+ RIQR + I     +D++LE++LE+GN +S+F   I+ ET +A++ L D++ RHQ+
Sbjct:   146 ERCKGRIQRQLEITGRPTNDDELEKMLEEGN-SSVFTQGIIMETQQAKQTLADIEARHQD 204

Query:   211 LLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKA 270
             ++KLE SI+EL D+F++MA+LVE QG++ID IE+HV  A + V+TA   TKKA+ YQ KA
Sbjct:   205 IMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQSKA 264

Query:   271 R 271
             R
Sbjct:   265 R 265
GO:0006887 "exocytosis" evidence=NAS
GO:0007268 "synaptic transmission" evidence=NAS
GO:0008021 "synaptic vesicle" evidence=IDA
GO:0007269 "neurotransmitter secretion" evidence=NAS;IMP
GO:0005484 "SNAP receptor activity" evidence=ISS;NAS
GO:0005886 "plasma membrane" evidence=ISS;IDA;NAS
GO:0006936 "muscle contraction" evidence=NAS
GO:0016020 "membrane" evidence=NAS
GO:0042335 "cuticle development" evidence=NAS
GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP
GO:0016192 "vesicle-mediated transport" evidence=NAS
GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=ISS
GO:0007349 "cellularization" evidence=NAS;TAS
GO:0016021 "integral to membrane" evidence=ISS
GO:0000910 "cytokinesis" evidence=IMP
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0007482 "haltere development" evidence=IGI
GO:0031629 "synaptic vesicle fusion to presynaptic membrane" evidence=IMP
UNIPROTKB|A8WVD0 unc-64 "Syntaxin-1A" [Caenorhabditis briggsae (taxid:6238)] Back     alignment and assigned GO terms
WB|WBGene00006798 unc-64 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|O16000 unc-64 "Syntaxin-1A homolog" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q16623 STX1A "Syntaxin-1A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R4L2 STX1A "Syntaxin-1A" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
RGD|69430 Stx1a "syntaxin 1A (brain)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P32851 Stx1a "Syntaxin-1A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:109355 Stx1a "syntaxin 1A (brain)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P32850 STX1A "Syntaxin-1A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P61267STX1B_BOVINNo assigned EC number0.43270.85710.8125yesN/A
P61266STX1B_HUMANNo assigned EC number0.43270.85710.8125yesN/A
P61265STX1B_RATNo assigned EC number0.43270.85710.8125yesN/A
P61264STX1B_MOUSENo assigned EC number0.43270.85710.8125yesN/A
O16000STX1A_CAEELNo assigned EC number0.4160.89740.8419yesN/A
Q24547STX1A_DROMENo assigned EC number0.44390.86810.8144yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 6e-24
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 3e-20
pfam0573962 pfam05739, SNARE, SNARE domain 8e-13
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 1e-10
pfam00804103 pfam00804, Syntaxin, Syntaxin 6e-10
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 6e-09
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 3e-08
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 2e-05
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score = 93.9 bits (234), Expect = 6e-24
 Identities = 59/149 (39%), Positives = 88/149 (59%), Gaps = 4/149 (2%)

Query: 38  FMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNS 97
           F + VE+ R  I  I E V+ ++ LHS LL++P  D  +K EL++  + +KK+AK++   
Sbjct: 4   FFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGK 63

Query: 98  LKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERI 157
           LK+LE S ++ E         +  RIRKTQ S      VE +TEFN+ Q  Y+E+ +ERI
Sbjct: 64  LKELEESNEQNEALNGS----SVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERI 119

Query: 158 QRVVSIARAEISDEKLEELLEQGNYASIF 186
           QR + I   E +DE+LE++LE GN     
Sbjct: 120 QRQLEITGGEATDEELEDMLESGNSEIFT 148

Length = 151
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 273
KOG0810|consensus297 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0809|consensus305 100.0
KOG0811|consensus269 100.0
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.93
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.9
KOG0812|consensus311 99.75
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.67
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.63
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.55
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.49
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.39
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 99.21
KOG3202|consensus235 97.59
KOG3894|consensus316 97.23
KOG3065|consensus273 93.6
PF0234657 Vac_Fusion: Chordopoxvirus fusion protein; InterPr 83.72
>KOG0810|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.7e-50  Score=349.15  Aligned_cols=262  Identities=36%  Similarity=0.549  Sum_probs=238.9

Q ss_pred             hhhhHHHHHhcC-cCCC---cccc---cccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHH
Q psy15387          8 YHQRIKALRVSC-VMDQ---CLQL---TITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLEL   80 (273)
Q Consensus         8 ~~DRl~el~~~~-~~~~---~~~~---~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i   80 (273)
                      |+|||+++.... +.+.   +++.   ....+..+..||..|+.|+..|..|...+.+|.++|.+++..|..+++++++|
T Consensus         1 M~d~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l   80 (297)
T KOG0810|consen    1 MNDRLSELLARSVSEDNELDDVEGHTGSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKL   80 (297)
T ss_pred             CccccHHHHcCchhhcccccccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHH
Confidence            789999999986 3222   2221   12234789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15387         81 DARTETVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRV  160 (273)
Q Consensus        81 ~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~  160 (273)
                      +.++..+.+.++.|+..|+.+++.+...+  ..++. .+..|++++++..+.++|.++|..|+.+|..|++.++.+++||
T Consensus        81 ~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~--~~~~~-~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rq  157 (297)
T KOG0810|consen   81 ESLVDEIRRRARKIKTKLKALEKENEADE--TQNRS-SAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQ  157 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999877654  21223 6678999999999999999999999999999999999999999


Q ss_pred             HHhccC-CCCHHHHHHHHhCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy15387        161 VSIARA-EISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDII  239 (273)
Q Consensus       161 ~~i~~~-~~~dee~~~~~~~g~~~~~f~~~~~~~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~l  239 (273)
                      |.++++ .++|++++.++++|++ ++|.+.++.+++.++..+.++++||.+|.+||++|.|||+||.|||+||+.||+||
T Consensus       158 l~i~~~~~~~de~ie~~ie~g~~-~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmv  236 (297)
T KOG0810|consen  158 LFIVGGEETTDEEIEEMIESGGS-EVFTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMV  236 (297)
T ss_pred             HhhhCCCcCChHHHHHHHHCCCh-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            999999 8899999999999988 88998888788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15387        240 DSIEHHVMEAGEAVETARVQTKKAIVYQKKARMS  273 (273)
Q Consensus       240 D~Ie~Nv~~a~~~v~~a~~~L~kA~~~qkk~rkk  273 (273)
                      |+||+||.+|.+||++|..+|++|.+||+++|||
T Consensus       237 d~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~  270 (297)
T KOG0810|consen  237 DRIENNVENAVDYVEQGVDHLKKAVKYQKKARKW  270 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999998

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0809|consensus Back     alignment and domain information
>KOG0811|consensus Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>KOG0812|consensus Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG3202|consensus Back     alignment and domain information
>KOG3894|consensus Back     alignment and domain information
>KOG3065|consensus Back     alignment and domain information
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 6e-45
1s94_A180 Crystal Structure Of The Habc Domain Of Neuronal Sy 8e-23
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 1e-19
1l4a_B88 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 5e-19
1ez3_A127 Crystal Structure Of The Neuronal T-Snare Syntaxin- 1e-16
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 6e-16
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 2e-15
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 3e-15
1jth_B77 Crystal Structure And Biophysical Properties Of A C 3e-15
1urq_B75 Crystal Structure Of Neuronal Q-Snares In Complex W 5e-14
1br0_A120 Three Dimensional Structure Of The N-Terminal Domai 7e-14
1n7s_B68 High Resolution Structure Of A Truncated Neuronal S 2e-12
3rk2_B65 Truncated Snare Complex Length = 65 2e-11
1kil_B62 Three-Dimensional Structure Of The ComplexinSNARE C 3e-10
1fio_A196 Crystal Structure Of Yeast T-Snare Protein Sso1 Len 1e-07
3b5n_B69 Structure Of The Yeast Plasma Membrane Snare Comple 2e-06
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 1e-05
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (449), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 155/238 (65%), Gaps = 4/238 (1%)
Query: 34  YHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKK 93
           + D F + VE+ R  I  I E+V+ ++  HS +L+SP  DE  K EL+     +KK A K
Sbjct: 41  FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANK 100
Query: 94  VSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKC 153
           V + LK +E+SI++EE         A LRIRKTQ ST     VE ++E+N  Q DY+E+C
Sbjct: 101 VRSKLKSIEQSIEQEEGL---NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERC 157
Query: 154 EERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLK 213
           + RIQR + I     + E+LE++LE GN A IF + I+ ++  +++AL +++ RH E++K
Sbjct: 158 KGRIQRQLEITGRTTTSEELEDMLESGNPA-IFASGIIMDSSISKQALSEIETRHSEIIK 216
Query: 214 LEKSIQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKAR 271
           LE SI+EL D+F++MA+LVE QG++ID IE++V  A + VE A   TKKA+ YQ KAR
Sbjct: 217 LENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 274
>pdb|1S94|A Chain A, Crystal Structure Of The Habc Domain Of Neuronal Syntaxin From The Squid Loligo Pealei Length = 180 Back     alignment and structure
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88 Back     alignment and structure
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a Length = 127 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75 Back     alignment and structure
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of Syntaxin 1a Length = 120 Back     alignment and structure
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68 Back     alignment and structure
>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62 Back     alignment and structure
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1 Length = 196 Back     alignment and structure
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex Length = 69 Back     alignment and structure
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 3e-42
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 5e-38
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 2e-27
1s94_A180 S-syntaxin; three helix bundle, structural plastic 3e-22
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 2e-21
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 2e-21
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 4e-21
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 1e-20
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 3e-20
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 1e-19
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 4e-18
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-05
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  144 bits (365), Expect = 3e-42
 Identities = 103/234 (44%), Positives = 153/234 (65%), Gaps = 4/234 (1%)

Query: 38  FMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAKKVSNS 97
           F + VE+ R  I  I E+V+ ++  HS +L+SP  DE  K EL+     +KK A KV + 
Sbjct: 33  FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSK 92

Query: 98  LKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERI 157
           LK +E+SI++EE         A LRIRKTQ ST     VE ++E+N  Q DY+E+C+ RI
Sbjct: 93  LKSIEQSIEQEEGLNRS---SADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 149

Query: 158 QRVVSIARAEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKS 217
           QR + I     + E+LE++LE GN  +IF + I+ ++  +++AL +++ RH E++KLE S
Sbjct: 150 QRQLEITGRTTTSEELEDMLESGN-PAIFASGIIMDSSISKQALSEIETRHSEIIKLENS 208

Query: 218 IQELRDLFVEMALLVEQQGDIIDSIEHHVMEAGEAVETARVQTKKAIVYQKKAR 271
           I+EL D+F++MA+LVE QG++ID IE++V  A + VE A   TKKA+ YQ KAR
Sbjct: 209 IRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 262
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Length = 127 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 100.0
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.97
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.96
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.93
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.93
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.93
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.93
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.91
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.88
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.87
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.83
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 99.54
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 98.48
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 96.98
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 96.86
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 96.79
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.74
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 96.15
3b5n_D64 Protein transport protein SEC9; snare complex, syn 96.1
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.09
3b5n_C70 Protein transport protein SEC9; snare complex, syn 95.49
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 95.3
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 93.52
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=2.6e-55  Score=382.06  Aligned_cols=262  Identities=42%  Similarity=0.634  Sum_probs=207.3

Q ss_pred             hhhhHHHHHhcCcC--CCcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHhHHHHHHHHH
Q psy15387          8 YHQRIKALRVSCVM--DQCLQLTITYSEYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTE   85 (273)
Q Consensus         8 ~~DRl~el~~~~~~--~~~~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~~~~~~~~i~~l~~   85 (273)
                      |||||++|++....  ++++++.++++.+||.|+..|++|+..|..|..++.+|.++|+.++++|.+++.++.+|+.++.
T Consensus         1 m~drl~~~~~~~~~~~~~~~~~~~~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~   80 (267)
T 1dn1_B            1 MKDRTQELRTAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMS   80 (267)
T ss_dssp             --------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHH
T ss_pred             CCchHHHHhcccCCCCccceecccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence            79999999987553  4557788899999999999999999999999999999999999988888887899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15387         86 TVKKIAKKVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIAR  165 (273)
Q Consensus        86 ~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i~~  165 (273)
                      +|+.+++.|+..|+.|...+...+   +++.++++.|++++|+..|+++|+++|..|+.+|..|+++++.++.|++.|+|
T Consensus        81 ~i~~~~~~i~~~Lk~l~~~~~~~~---~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~  157 (267)
T 1dn1_B           81 DIKKTANKVRSKLKSIEQSIEQEE---GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITG  157 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc---ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccC
Confidence            999999999999999998765322   22333778899999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHhCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15387        166 AEISDEKLEELLEQGNYASIFNADIVTETLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQGDIIDSIEHH  245 (273)
Q Consensus       166 ~~~~dee~~~~~~~g~~~~~f~~~~~~~~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~QGe~lD~Ie~N  245 (273)
                      |++++++++.++++|++ ++|+++++.++..++.++.+|++||++|.+||++|.|||+||.|||+||++||++||+||+|
T Consensus       158 ~~~tdeeie~~ie~g~~-~~f~q~~l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~n  236 (267)
T 1dn1_B          158 RTTTSEELEDMLESGNP-AIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN  236 (267)
T ss_dssp             CCCCHHHHHHHHHTCSS-CTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHH
T ss_pred             CCCCHHHHHHHHhCCcH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999999987 78988865566678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15387        246 VMEAGEAVETARVQTKKAIVYQKKARMS  273 (273)
Q Consensus       246 v~~a~~~v~~a~~~L~kA~~~qkk~rkk  273 (273)
                      |+.|..||+.|..+|.+|.+|||++|||
T Consensus       237 v~~a~~~v~~~~~~l~kA~~~q~~~rkk  264 (267)
T 1dn1_B          237 VEHAVDYVERAVSDTKKAVKYQSKARRK  264 (267)
T ss_dssp             HHTCCCCCCCCC----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999997
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 273
d1ez3a_124 a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat ( 2e-21
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 2e-19
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.9 bits (210), Expect = 2e-21
 Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 3/125 (2%)

Query: 33  EYHDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQDENMKLELDARTETVKKIAK 92
            + D F + VE+ R  I  I E+V+ ++  HS +L+SP  DE  K EL+     +KK A 
Sbjct: 3   RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTAN 62

Query: 93  KVSNSLKKLERSIKKEEDEIEDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEK 152
           KV + LK +E+SI++EE         A LRIRKTQ ST     VE ++E+N  Q DY+E+
Sbjct: 63  KVRSKLKSIEQSIEQEEGLNRS---SADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRER 119

Query: 153 CEERI 157
           C+ RI
Sbjct: 120 CKGRI 124
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.95
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.81
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 96.94
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.8e-27  Score=193.26  Aligned_cols=188  Identities=26%  Similarity=0.399  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc--chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q psy15387         35 HDCFMDTVEDSRALIANIQEHVKAMRNLHSDLLSSPRQ--DENMKLELDARTETVKKIAKKVSNSLKKLERSIKKEEDEI  112 (273)
Q Consensus        35 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~--~~~~~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~  112 (273)
                      ++.|++.|++|+..|..|+..+..|..++...+..+..  ...++..++.++.+++.+++.|+..++.+...        
T Consensus         4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~--------   75 (196)
T d1fioa_           4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD--------   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Confidence            78999999999999999999999999999876655432  24688999999999999999998888877653        


Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHhCCCchhhhhHHHHH
Q psy15387        113 EDGHIPASLRIRKTQQSTTLHLLVEAITEFNQEQLDYKEKCEERIQRVVSIARAEISDEKLEELLEQGNYASIFNADIVT  192 (273)
Q Consensus       113 ~~~~~~~e~ri~~~~~~~L~~~f~~~~~~f~~~q~~y~~~~k~~~~r~~~i~~~~~~dee~~~~~~~g~~~~~f~~~~~~  192 (273)
                           ..+.+++++++.+|..+|..++..|+.+|..|.++++.++.|++.+++|.+++++++..+..++..+.|.+....
T Consensus        76 -----~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (196)
T d1fioa_          76 -----GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLN  150 (196)
T ss_dssp             -----TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHHHHTC-
T ss_pred             -----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccchhhhHhhccccchHHHHHHHHH
Confidence                 223578999999999999999999999999999999999999999999999999988766543333555544332


Q ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15387        193 E--TLEARKALEDVQIRHQELLKLEKSIQELRDLFVEMALLVEQQ  235 (273)
Q Consensus       193 ~--~~~~~~~l~~i~eR~~eI~~Ie~sI~eL~~iF~dla~LV~~Q  235 (273)
                      .  ..+....+.++++|+++|.+||++|.|||+||.|||+||++|
T Consensus       151 ~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ  195 (196)
T d1fioa_         151 ANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ  195 (196)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc
Confidence            2  234577889999999999999999999999999999999988
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure