Psyllid ID: psy1544

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330-
MSNSSTSPNPPPPQQQQPPLNVGQLPMGAPGSGPPGSPGPSPGQAPGQNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEMKANRTEIKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGPMPMPPSQPMPNQAQPMPLQQQPPPQPHQQQGHISSQIKQSKLTNIPKPEGLDPLIILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRALKVLNFQRQLRAEVIACARRDTTLETAVNVKAYKRTKRQGLKEARATEKLEKQQKVEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKEHKMEQKKKQDEESKKRKQSVKQKLMDTDGKVTLDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVADSDEENEDEDSEKSKEKTSGENENKEKNKGEDDEYNKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEEDEEENAVPDDETVNQMLARSEEEFQTYQRIDAERRKEQGKKSRLIEVSELPDWLIKEDEEIEQWAFEAKEEEKALHMGRGSRQRKQVDYTDSLTEKEWLKAIDDGVEYDDEEEEEEEEVRSKRKGKRRKKTEDDDEEPSTSKKRKKEKEKDREKDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKARQRVESGEDPDE
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHcccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHccccccEEEEHHHHHHHccccccccccEEEEEEccccccccccHHHHHHHHHcccccEEEEccccccccHHHHHHHHHcccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccHHcccHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHcccccccccccccHHHHHccHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHHccccccccEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHcHHHHHHHHHHHHHHHcccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccHHHHHHccccEEEEEcccHHccccccHHHHHHHHHHHcccccEEccccccccccccHHcHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHcccEEEEEEHHHHHcccHHHHHEEEEEEEEcccccccccccHHHHHHHHHcccccEEEEcccHcHccHHHHHHHHHHHcHHHccccccHHHHHccccccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHcccEEEccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHccHHHHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccccEEEEEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHHcccccEEEEEEEEEcccHHHHHHHHHHHHccccHHEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHcccccccHHHccccHHHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHccccccHHHHHHHHccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEccccccccHHHcccHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHHHHHHHccccccc
msnsstspnppppqqqqpplnvgqlpmgapgsgppgspgpspgqapgqnpqENLTALQRAIDSMKeqgleedpRYQKLIEMKANRTEIKHAFTSAQVQQLRFQIMAYRLLarnqpltpqlamgvqgkrmegvpsgpqmppmslhgpmpmppsqpmpnqaqpmplqqqpppqphqqqghissqikqskltnipkpegldpliILQERENRVALNIERRIEELNgsltstlpehLRVKAEIELRALKVLNFQRQLRAEVIACARRDTTLETAVNVKAYKRTKRQGLKEARATEKLEKQQKVEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKEHKMEQKKKQDEESKKRKQSVKQKLMdtdgkvtldqdetsqltdmhisvreissgkvlkgedapLAAHLKQWIqdhpgwevvadsdeenededsekskektsgenenkeknkgeddeynKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNgilademglgktIQTIALITYLMEKkkvngpfliivplstlsnwsleferwapsvnvvaykgsphLRKTLQAQMKASKFNVLLTTYEYVikdkgplaklHWKYMIIDeghrmknhhckLTHILNTfyvaphrllltgtplqnKLPELWALLNFLLPSIFKSVSTFEQwfnapfattgekvelneEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHtkgilltdgsekgkqgkggAKALMNTIVQLRKLCNHPFMFQNIEEKfsdhvggsgivsgpdlyrvsgkfelldrilpklkstgHRVLLFCQMTQLMNILEDYfsyrgfkymrldgttkaedrgdllkkfnapdseYFIFVLSTragglglnlqtadtviifdsdwnphqdlqaQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIqagmfdqkstgseRHQFLQTILhqddeedeeenavpddetVNQMLARSEEEFQTYQRIDAERRKEQGKKSRLIEVselpdwlikEDEEIEQWAFEAKEEEKALhmgrgsrqrkqvdytdsltEKEWLKAIDdgveyddeeeeEEEEVRSKRkgkrrkktedddeepstskkrkkEKEKDREKDQAKLKKTLKKIMRVVIKYtdsdgrvlsepfiklpsrkelpdyyevidrpMDIKKILGriedgkyssVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKARQRVESGEDPDE
msnsstspnppppqqqQPPLNVGQLPMGAPGSGPPGSPGPSPGQAPGQNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEMKANRTEIKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGPMPMPPSQPMPNQAQPMPLQQQPPPQPHQQQGHISSQIKQSKLTNIPKPEGLDPLIILQERENRVALNIERRIEElngsltstlpehLRVKAEIELRALKVLNFQRQLRAEVIacarrdttletavnvkaykrtkrqglkearateklekqqkveaerkkrqkhqeyITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHanaekeqkkeqeRIEKERMRrlmaedeegyrklidqkkdKRLAFLLSQTDEYISNLTQMVKEHKMeqkkkqdeeskkrkqsvkqklmdtdgkvtldqdetsqltdmhisvrEISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVADsdeenededsekskektsgenenkeknkgeddeynKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNApfattgekvelNEEETILIIRRLHKVLRPFLLRRlkkevesqlpdkveyIIKCDMSGLQKVLYRHMHTKGilltdgsekgkqgKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRahrigqknevrvlrlmtvnsVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHqddeedeeenavpddetvnQMLARSeeefqtyqridaerrkeqgkksrlievselpdwlikEDEEIEQWAFEAKEEEkalhmgrgsrqrkqvdytdsltekewlkaiddgveyddeeeeeeeevrskrkgkrrkktedddeepstskkrkkekekdrekdqaklkktlkkIMRVVikytdsdgrvlsepfiklpsrkelpdyyevidrpmDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKArqrvesgedpde
MsnsstspnppppqqqqppLNVGQLPMgapgsgppgspgpspgqapgqNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEMKANRTEIKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGpmpmppsqpmpnqaqpmplqqqpppqphqqqGHISSQIKQSKLTNIPKPEGLDPLIILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRALKVLNFQRQLRAEVIACARRDTTLETAVNVKAYKRTKRQGLKEARATEKLEKQQKVEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAekeqkkeqeriekermrrLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTqmvkehkmeqkkkqdeeskkrkqSVKQKLMDTDGKVTLDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVAdsdeenededsekskektsgenenkeknkgeddeynknAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEkgkqgkggakaLMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEEDEEENAVPDDETVNQMLARSEEEFQTYQRIDAERRKEQGKKSRLIEVSELPDWLIKEDEEIEQWAFEAKEEEKALHMGRGSRQRKQVDYTDSLTEKEWLKAIddgveyddeeeeeeeevrskrkgkrrkktedddeePSTSkkrkkekekdrekdQAklkktlkkIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKARQRVESGEDPDE
************************************************************************************RTEIKHAFTSAQVQQLRFQIMAYRLLARNQ***********************************************************************************DPLIILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRALKVLNFQRQLRAEVIACARRDTTLETAVNVKAY**********************************EYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNY*****************************************RLAFLLSQTDEYI***********************************************************************PLAAHLKQWIQDHPGW**********************************************ATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTD***********AKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQA**RAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGM**********************************************************************VSELPDWLIKEDEEIEQWA*************************************************************************************************LKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFT**************
****************************************************************************************************************************************************************************************************LDPLIILQERENRVALNIERRIEELNG********HLRVKAEIELRALKVLNFQRQLRAEVIACARRDT**************************************************VLQHCKDFKEYHRNN*A**MR*NKAVMNY********************************KLIDQKKDKRLAFLLSQTDEYISNLTQMVK**************************DTDGKVTLDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEV***************************************************HTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTG****LNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGIL******************MNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKV**********************LHQ************DDETVNQMLARSEEEFQTYQ****************IEVSELPDWLIKEDEEIEQWAFE******************QVDYTDSLTEK***************************************************************KKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKA************
*******************LNVGQLPMGA********************PQENLTALQRAIDSMKEQGLEEDPRYQKLIEMKANRTEIKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGPMPMPPS******************************IKQSKLTNIPKPEGLDPLIILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRALKVLNFQRQLRAEVIACARRDTTLETAVNVKAYKRT******************************QEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHAN************EKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMV**************************MDTDGKVTLDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVA*********************************EYNKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQ**************ETVNQMLARSEEEFQTYQRIDAE*********RLIEVSELPDWLIKEDEEIEQWAFEAKEEE*****************TDSLTEKEWLKAIDDGV**************************************************AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKAR***********
**************************************************************************YQKLIE*********HAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQG*********************************************************KQSKLTNIPKPEGLDPLIILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRALKVLNFQRQLRAEVIACARRDTTLETAVNVKAYKRTKRQGLKEARATEKLEKQQKVEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKEHKMEQKKKQDEESKKRKQSVK***********LDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVADS***************TSGENENK******DDEYNKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEK***GKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEEDEE*NAVPDDETVNQMLARSEEEFQTYQRIDAERRKE**KKSRLIEVSELPDWLIKEDEEIEQWAFEAKEEEKAL*MGRGSRQRKQVDYTDSLTEKEWLKAIDDG************************************************KDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKARQRVES******
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSNSSTSPNPPPPQQQQPPLNVGQLPMGAPGSGPPGSPGPSPGQAPGQNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEMKANRTEIKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGPMPMPPSQPMPNQAQPMPLQQQPPPQPHQQQGHISSQIKQSKLTNIPKPEGLDPLIILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRALKVLNFQRQLRAEVIACARRDTTLETAVNVKAYKRTKRQGxxxxxxxxxxxxxxxxxxxxxKRQKHQEYITTVLQHCKDFKEYHRNNQARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDEEGYRKLIDQKKDKRLAFLLSQTDEYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLMDTDGKVTLDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVADSDEENEDEDSEKSKEKTSGENENKEKNKGEDDEYNKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEEDEEENAVPDDETVNQMLARSEEEFQTYQRIDAERRKEQGKKSRLIEVSELPDWLIKEDEEIEQWAFEAKEEEKALHMGRGSRQRKQVDYTDSLTEKEWLKAIDDGVEYDDEEEEEEEEVRSKRKGKRRKKTEDDDEEPSTSKKRxxxxxxxxxxxxxxxxxxxxxIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSxxxxxxxxxxxxxxxxxxxxxLSLIHEDSVVLESVFTKARQRVESGEDPDE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1331 2.2.26 [Sep-21-2011]
P254391638 ATP-dependent helicase br yes N/A 0.880 0.715 0.680 0.0
P515321647 Transcription activator B yes N/A 0.864 0.698 0.612 0.0
A7Z0191606 Transcription activator B yes N/A 0.861 0.714 0.627 0.0
Q3TKT41613 Transcription activator B yes N/A 0.863 0.712 0.626 0.0
Q8K1P71613 Transcription activator B yes N/A 0.863 0.712 0.626 0.0
Q6DIC01577 Probable global transcrip no N/A 0.885 0.746 0.610 0.0
P515311590 Probable global transcrip no N/A 0.860 0.720 0.613 0.0
Q9UTN61199 Chromatin structure-remod yes N/A 0.576 0.639 0.529 0.0
O944211680 SWI/SNF chromatin-remodel no N/A 0.732 0.580 0.444 0.0
P22082 1703 Transcription regulatory yes N/A 0.478 0.374 0.562 0.0
>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2 Back     alignment and function desciption
 Score = 1589 bits (4115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 831/1222 (68%), Positives = 983/1222 (80%), Gaps = 50/1222 (4%)

Query: 132  VPSGPQMPPMSLHGPMPMPPSQPMPNQAQPMPLQQQPPPQPHQQQGHISSQI-------- 183
            +P+G +   M   G  P+ PS PM  Q +       P  Q  Q  G    Q+        
Sbjct: 329  LPNGGKPLSMGPSGGQPLIPSSPMQPQVRGTLPGMPPGSQVPQPGGGPQRQVPPAGMPMP 388

Query: 184  KQSKLTNIPKPEGLDPLIILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRA 243
            K +++T + KP GLDP+ +LQERENR+A  I  R++EL   L +T+ E LR++A IELRA
Sbjct: 389  KPNRITTVAKPVGLDPITLLQERENRIAARISLRMQELQ-RLPATMSEDLRLQAAIELRA 447

Query: 244  LKVLNFQRQLRAEVIACARRDTTLETAVNVKAYKRTKRQGLKEARATEKLEKQQKVEAER 303
            L+VLNFQRQLR E + C RRDTTLETA+N+K YKRTKRQGL+EARATEKLEKQQK+EAER
Sbjct: 448  LRVLNFQRQLRMEFVQCTRRDTTLETALNIKLYKRTKRQGLREARATEKLEKQQKLEAER 507

Query: 304  KKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAEKEQKKEQERIEKER 363
            K+RQKH E++  VLQH KD +E+HRNN+A++ R+NKAVMN+HANAE+EQKKEQERIEKER
Sbjct: 508  KRRQKHLEFLAAVLQHGKDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQERIEKER 567

Query: 364  MRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKEHKMEQKKKQDEESKKR 423
            MRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVK+HK +Q KK++EE K+ 
Sbjct: 568  MRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKQHKDDQMKKKEEEGKRL 627

Query: 424  KQSVKQKLMDTDGKVTLDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHP 483
             Q  K+ LM  +    +  DE S + DM + V E  +GK L G+DAP+  HL +W+  HP
Sbjct: 628  IQFKKELLMSGE---YIGIDEGSIVADMRVHVVEQCTGKKLTGDDAPMLKHLHRWLNMHP 684

Query: 484  GWEVVADSDEENEDEDSEK--------------SKEKTSGENENKE----KNKGEDDEYN 525
            GW+ + D ++     D  K               K + +G +E+ +    K K EDDEY 
Sbjct: 685  GWDWIDDEEDSCGSNDDHKPKVEEQPTATEDATDKAQATGNDEDAKDLITKAKVEDDEYR 744

Query: 526  KNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMG 585
                EE TYYSIAHT+HE V EQASI+VNG LKEYQIKGLEW+VSL+NNNLNGILADEMG
Sbjct: 745  T---EEQTYYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMG 801

Query: 586  LGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRK 645
            LGKTIQTI+L+TYLM++KKV GP+LIIVPLSTL NW LEFE+WAP+V VV+YKGSP  R+
Sbjct: 802  LGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRR 861

Query: 646  TLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYV 705
             LQ QM+A+KFNVLLTTYEYVIKDK  LAK+ WKYMIIDEGHRMKNHHCKLT +LNT Y+
Sbjct: 862  LLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYI 921

Query: 706  APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETI 765
            AP+RLLLTGTPLQNKLPELWALLNFLLPSIFKS STFEQWFNAPFATTGEKVELNEEETI
Sbjct: 922  APYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETI 981

Query: 766  LIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGS 825
            LIIRRLHKVLRPFLLRRLKKEVE QLPDKVEYIIKCDMS LQ+VLY+HM +KG+LLTDGS
Sbjct: 982  LIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGS 1041

Query: 826  EKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFE 885
            EKGK GKGGAKALMNTIVQLRKLCNHPFMFQ+IEEK+ DH GG G+VSGPDLYRVSGKFE
Sbjct: 1042 EKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFE 1101

Query: 886  LLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945
            LLDRILPKLK+T HRVLLFCQMTQ M I+EDY  +R F Y+RLDGTTKAEDRG+LL+KFN
Sbjct: 1102 LLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFN 1161

Query: 946  APDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 1005
            A  S+ F+F+LSTRAGGLGLNLQTADTV+IFDSDWNPHQDLQAQDRAHRIGQ+NEVRVLR
Sbjct: 1162 AKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLR 1221

Query: 1006 LMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEEDEEENA 1065
            LMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSER QFLQTILHQDD E+EEEN 
Sbjct: 1222 LMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENE 1281

Query: 1066 VPDDETVNQMLARSEEEFQTYQRIDAERRKE----QGKKSRLIEVSELPDWLIKEDEEIE 1121
            VPDDE +N M+ARSEEE + ++R+DAER+KE       + RLI+ SELPDWL K+D+E+E
Sbjct: 1282 VPDDEMINMMIARSEEEIEIFKRMDAERKKEDEEIHPGRERLIDESELPDWLTKDDDEVE 1341

Query: 1122 QWAFEAKEEEKALHMGRGSRQRKQVDYTDSLTEKEWLKAIDDGVEYDDEEEEEEEEVRSK 1181
            ++ ++  E+     +GRGSRQRK+VDYTDSLTEKEWLKAIDDG E+D+EEEE++ + + +
Sbjct: 1342 RFHYQYDEDTI---LGRGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKRKRR 1398

Query: 1182 RKGKRRKKTEDDDEEPSTSKKRKKEKEKDREKDQAKLKKTLKKIMRVVIKYTDSDGRVLS 1241
            ++  R+++++DD    S   KR++ +  D+     + KK + KIM  VIK+ + DGR LS
Sbjct: 1399 KRKNRKEESDDD----SLILKRRRRQNLDK-----RSKKQMHKIMSAVIKH-NQDGRTLS 1448

Query: 1242 EPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEE 1301
            EPF+KLPSR+ LPDYYE+I RP+DIKKIL RIED KY+ ++EL+KDF  LC+NAQIYNEE
Sbjct: 1449 EPFMKLPSRQRLPDYYEIIKRPVDIKKILQRIEDCKYADLNELEKDFMQLCQNAQIYNEE 1508

Query: 1302 LSLIHEDSVVLESVFTKARQRV 1323
             SLI+ DS+ L+ VF  ARQR+
Sbjct: 1509 ASLIYLDSIALQKVFVGARQRI 1530
Transcriptional regulator. Act as coactivator, assisting one or more dedicated transcriptional activators of ANTC and BXC homeotic gene clusters. Can counteract the repressive effect of Polycomb protein. ATPase subunit of the Brahma complex, a multiprotein complex which is the equivalent of the yeast SWI/SNF complex and acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. This complex can both serve as a transcriptional coactivator or corepressor, depending on the context.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2 Back     alignment and function description
>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1 Back     alignment and function description
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1 Back     alignment and function description
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1 Back     alignment and function description
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1 Back     alignment and function description
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2 Back     alignment and function description
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1 Back     alignment and function description
>sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2 Back     alignment and function description
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1331
340717205 2009 PREDICTED: ATP-dependent helicase brm-li 0.933 0.618 0.706 0.0
350407682 2009 PREDICTED: ATP-dependent helicase brm-li 0.933 0.618 0.706 0.0
307179542 1996 ATP-dependent helicase brm [Camponotus f 0.951 0.634 0.694 0.0
328793843 2018 PREDICTED: ATP-dependent helicase brm [A 0.933 0.615 0.704 0.0
1892416681402 PREDICTED: similar to brahma CG5942-PA, 0.941 0.893 0.689 0.0
332025170 1953 ATP-dependent helicase brm [Acromyrmex e 0.937 0.639 0.706 0.0
380022521 2019 PREDICTED: LOW QUALITY PROTEIN: ATP-depe 0.937 0.618 0.707 0.0
270001259 1649 brahma [Tribolium castaneum] 0.943 0.761 0.691 0.0
156544311 1587 PREDICTED: ATP-dependent helicase brm [N 0.945 0.793 0.695 0.0
383854229 2017 PREDICTED: ATP-dependent helicase brm-li 0.932 0.615 0.699 0.0
>gi|340717205|ref|XP_003397077.1| PREDICTED: ATP-dependent helicase brm-like [Bombus terrestris] Back     alignment and taxonomy information
 Score = 1772 bits (4589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 924/1307 (70%), Positives = 1079/1307 (82%), Gaps = 64/1307 (4%)

Query: 51   QENLTALQRAIDSMKEQGLEEDPRYQKLIEMKANRTEI--KHAFTSAQVQQLRFQIMAYR 108
            QENL ALQ+AIDSM+E+GL+EDPRY +L+ ++A +  I  K AF+S Q+QQLR QIMAYR
Sbjct: 674  QENLNALQKAIDSMEEKGLQEDPRYSQLLALRARQGNIGEKQAFSSQQLQQLRVQIMAYR 733

Query: 109  LLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGPMPMPPSQPMPNQAQPMPLQQQP 168
            LLARNQPL+ QLA+ VQG        G + P     GP    P+   P  + P  +    
Sbjct: 734  LLARNQPLSQQLALAVQGGAPPPPGMGQRTPIDPSQGP----PTTTGPQISGPNVIGSAV 789

Query: 169  PPQPH----QQQGHISSQIKQSKLTNIPKPEGLDPLIILQERENRVALNIERRIEELNGS 224
            PP+P     QQQ       K +++T++ KP GLDPL+ILQERENRVA  I  R+E+L+ +
Sbjct: 790  PPRPGCQTPQQQQPPQPGAKTNRVTSVAKPAGLDPLLILQERENRVAARIALRMEQLS-N 848

Query: 225  LTSTLPEHLRVKAEIELRALKVLNFQRQLRAEVIACARRDTTLETAVNVKAYKRTKRQGL 284
            L + +PE LR++A+IELR L+VLNFQRQLR+E++AC R+DTTLETAVNVKAYKRTKRQGL
Sbjct: 849  LPTNMPEDLRIQAQIELRMLRVLNFQRQLRSEILACTRKDTTLETAVNVKAYKRTKRQGL 908

Query: 285  KEARATEKLEKQQKVEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNY 344
            +EARATEKLEKQQK+EAERK+RQKHQE++++VLQH KDFKE+HRNN A++ RLNKAV+NY
Sbjct: 909  REARATEKLEKQQKLEAERKRRQKHQEFLSSVLQHGKDFKEFHRNNVAKLARLNKAVLNY 968

Query: 345  HANAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQM 404
            HANAE+EQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLT+M
Sbjct: 969  HANAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTEM 1028

Query: 405  VKEHKMEQKKKQDEESKKRKQSVKQKLMDTDGKVTLDQDETSQLTDMHISVREISSGKVL 464
            VK+HK+EQK+KQ EE  ++++  K+KL D +G    + +E     D  + V E ++G+ L
Sbjct: 1029 VKQHKIEQKRKQVEE--QKRKKKKKKLQDGEGGEDGNANE-----DTRVGVIETATGRTL 1081

Query: 465  KGEDAPLAAHLKQWIQDHPGWEVVADSDEENEDE-------------------DSEKSKE 505
             GE+APL + L Q+++ HPGWE +    E++EDE                   DSE+ K 
Sbjct: 1082 TGEEAPLMSQLSQFLESHPGWEPIESESEDDEDEEEEENEGEEKGENKEKSTGDSEEEKV 1141

Query: 506  KTSGENENKEKNKGEDDEYNKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGL 565
            K +       K K EDDEY     EE TYYSIAHTVHE+VTEQASI+VNGKLKEYQIKGL
Sbjct: 1142 KKT-----IHKAKVEDDEYKT---EEQTYYSIAHTVHEVVTEQASIMVNGKLKEYQIKGL 1193

Query: 566  EWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625
            EW+VSLFNNNLNGILADEMGLGKTIQTIAL+TYLMEKKKVNGPFLIIVPLSTLSNW LEF
Sbjct: 1194 EWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPFLIIVPLSTLSNWVLEF 1253

Query: 626  ERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDE 685
            E+WAPSV VV+YKGSP  R+ +Q+QM+A+KFNVLLTTYEYVIKDKG LAKL WKYMIIDE
Sbjct: 1254 EKWAPSVVVVSYKGSPAGRRAIQSQMRATKFNVLLTTYEYVIKDKGVLAKLQWKYMIIDE 1313

Query: 686  GHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQW 745
            GHRMKNHHCKLT +LNT Y+APHRLLLTGTPLQNKLPELWALLNFLLPSIFKS STFEQW
Sbjct: 1314 GHRMKNHHCKLTQVLNTHYLAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQW 1373

Query: 746  FNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSG 805
            FNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSG
Sbjct: 1374 FNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSG 1433

Query: 806  LQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865
            LQKVLY+HM +KG+LLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQ IEEK+ +H
Sbjct: 1434 LQKVLYKHMQSKGVLLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQAIEEKYCEH 1493

Query: 866  VG--GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGF 923
            VG  GSG+++GPDLYR SGKFELLDRILPKLK+T HRVLLFCQMTQLM I+EDY S+RGF
Sbjct: 1494 VGTQGSGVITGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTQLMTIMEDYLSWRGF 1553

Query: 924  KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPH 983
             Y+RLDGTTKAEDRGDLLKKFN P SEYF+F+LSTRAGGLGLNLQ ADTVIIFDSDWNPH
Sbjct: 1554 MYLRLDGTTKAEDRGDLLKKFNDPGSEYFLFLLSTRAGGLGLNLQAADTVIIFDSDWNPH 1613

Query: 984  QDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGS 1043
            QDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGS
Sbjct: 1614 QDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGS 1673

Query: 1044 ERHQFLQTILHQDDEEDEEENAVPDDETVNQMLARSEEEFQTYQRIDAERRKEQGK---- 1099
            ER QFLQ+ILHQDD EDEEEN VPDDETVNQM+AR+E EF+ +Q++D ERR+E+ K    
Sbjct: 1674 ERQQFLQSILHQDDAEDEEENEVPDDETVNQMIARTEGEFEIFQKLDLERRREEAKLGPN 1733

Query: 1100 -KSRLIEVSELPDWLIKEDEEIEQWAFEAKEEEKALHMGRGSRQRKQVDYTDSLTEKEWL 1158
             KSRL+E +ELPDWL+K+D+E+E+W +E  E+     +GRGSRQRK+VDYTDSLTEKEWL
Sbjct: 1734 RKSRLLEEAELPDWLVKDDDEVERWTYEEDEDR---FLGRGSRQRKEVDYTDSLTEKEWL 1790

Query: 1159 KAIDDGVEYDDEEEEEEEEVRSKRKGKRRKKTEDDDEEPSTSKKRKKEKEKDREKDQAKL 1218
            KAI    +   E EEEEE+ + K+K ++RKK  ++D+EP   K+R      D      K+
Sbjct: 1791 KAI---DDDGAEYEEEEEDDKKKKKTRKRKKKGEEDDEPMPKKRRGTGSSID-----PKM 1842

Query: 1219 KKTLKKIMRVVIKYTDS-DGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGK 1277
            K+ +KK++ VV+ YTDS DGR+LSEPF+KLPSR+ELPDYYE+I +P+ I K+L +IE+GK
Sbjct: 1843 KRAMKKLLMVVVNYTDSTDGRLLSEPFMKLPSRRELPDYYEIIKKPLTINKLLQKIEEGK 1902

Query: 1278 YSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKARQRVE 1324
            Y+  D+L+KDF  LC+NAQIYNEE SLIHEDS+VL+SVFT ARQR+E
Sbjct: 1903 YADFDDLEKDFMQLCKNAQIYNEEASLIHEDSIVLQSVFTNARQRIE 1949

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350407682|ref|XP_003488159.1| PREDICTED: ATP-dependent helicase brm-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307179542|gb|EFN67856.1| ATP-dependent helicase brm [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328793843|ref|XP_624270.3| PREDICTED: ATP-dependent helicase brm [Apis mellifera] Back     alignment and taxonomy information
>gi|189241668|ref|XP_967398.2| PREDICTED: similar to brahma CG5942-PA, partial [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332025170|gb|EGI65350.1| ATP-dependent helicase brm [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380022521|ref|XP_003695092.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent helicase brm-like [Apis florea] Back     alignment and taxonomy information
>gi|270001259|gb|EEZ97706.1| brahma [Tribolium castaneum] Back     alignment and taxonomy information
>gi|156544311|ref|XP_001607169.1| PREDICTED: ATP-dependent helicase brm [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383854229|ref|XP_003702624.1| PREDICTED: ATP-dependent helicase brm-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1331
FB|FBgn00002121638 brm "brahma" [Drosophila melan 0.729 0.592 0.682 0.0
MGI|MGI:881921613 Smarca4 "SWI/SNF related, matr 0.469 0.387 0.752 0.0
RGD|6217281613 Smarca4 "SWI/SNF related, matr 0.469 0.387 0.752 0.0
UNIPROTKB|G3V7901614 Smarca4 "SWI/SNF related, matr 0.469 0.387 0.752 0.0
UNIPROTKB|A7Z0191606 SMARCA4 "Transcription activat 0.469 0.389 0.752 0.0
UNIPROTKB|E2RJ891614 SMARCA4 "Uncharacterized prote 0.469 0.387 0.752 0.0
UNIPROTKB|F1M6Y41618 Smarca4 "Transcription activat 0.469 0.386 0.749 0.0
ZFIN|ZDB-GENE-030605-11627 smarca4 "SWI/SNF related, matr 0.469 0.384 0.746 0.0
UNIPROTKB|F1MJ461604 SMARCA4 "Transcription activat 0.468 0.388 0.749 0.0
UNIPROTKB|E1C2F71546 E1C2F7 "Uncharacterized protei 0.469 0.404 0.731 0.0
FB|FBgn0000212 brm "brahma" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 3440 (1216.0 bits), Expect = 0., Sum P(3) = 0.
 Identities = 680/997 (68%), Positives = 779/997 (78%)

Query:   184 KQSKLTNIPKPEGLDPLIILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRA 243
             K +++T + KP GLDP+ +LQERENR+A  I  R++EL   L +T+ E LR++A IELRA
Sbjct:   389 KPNRITTVAKPVGLDPITLLQERENRIAARISLRMQELQ-RLPATMSEDLRLQAAIELRA 447

Query:   244 LKVLNFQRQLRAEVIACARRDTTLETAVNVKAYKRTKRQGLKEARATEKLEKQQKVEAER 303
             L+VLNFQRQLR E + C RRDTTLETA+N+K YKRTKRQGL+EARATEKLEKQQK+EAER
Sbjct:   448 LRVLNFQRQLRMEFVQCTRRDTTLETALNIKLYKRTKRQGLREARATEKLEKQQKLEAER 507

Query:   304 KKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAXXXXXXXXXXXXXXX 363
             K+RQKH E++  VLQH KD +E+HRNN+A++ R+NKAVMN+HANA               
Sbjct:   508 KRRQKHLEFLAAVLQHGKDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQERIEKER 567

Query:   364 XXXLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTXXXXXXXXXXXXXXXXXXXXX 423
                LMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLT                     
Sbjct:   568 MRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKQHKDDQMKKKEEEGKRL 627

Query:   424 XXSVKQKLMDTDGKVTLDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHP 483
                 K+ LM   G+  +  DE S + DM + V E  +GK L G+DAP+  HL +W+  HP
Sbjct:   628 IQFKKELLMS--GEY-IGIDEGSIVADMRVHVVEQCTGKKLTGDDAPMLKHLHRWLNMHP 684

Query:   484 GWEVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAM-------------- 529
             GW+ +                                       A               
Sbjct:   685 GWDWIDDEEDSCGSNDDHKPKVEEQPTATEDATDKAQATGNDEDAKDLITKAKVEDDEYR 744

Query:   530 -EEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGK 588
              EE TYYSIAHT+HE V EQASI+VNG LKEYQIKGLEW+VSL+NNNLNGILADEMGLGK
Sbjct:   745 TEEQTYYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGK 804

Query:   589 TIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQ 648
             TIQTI+L+TYLM++KKV GP+LIIVPLSTL NW LEFE+WAP+V VV+YKGSP  R+ LQ
Sbjct:   805 TIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQ 864

Query:   649 AQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPH 708
              QM+A+KFNVLLTTYEYVIKDK  LAK+ WKYMIIDEGHRMKNHHCKLT +LNT Y+AP+
Sbjct:   865 NQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPY 924

Query:   709 RLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILII 768
             RLLLTGTPLQNKLPELWALLNFLLPSIFKS STFEQWFNAPFATTGEKVELNEEETILII
Sbjct:   925 RLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILII 984

Query:   769 RRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEXX 828
             RRLHKVLRPFLLRRLKKEVE QLPDKVEYIIKCDMS LQ+VLY+HM +KG+LLTDGSE  
Sbjct:   985 RRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKG 1044

Query:   829 XXXXXXXXXLMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLD 888
                      LMNTIVQLRKLCNHPFMFQ+IEEK+ DH GG G+VSGPDLYRVSGKFELLD
Sbjct:  1045 KHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELLD 1104

Query:   889 RILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPD 948
             RILPKLK+T HRVLLFCQMTQ M I+EDY  +R F Y+RLDGTTKAEDRG+LL+KFNA  
Sbjct:  1105 RILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKG 1164

Query:   949 SEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMT 1008
             S+ F+F+LSTRAGGLGLNLQTADTV+IFDSDWNPHQDLQAQDRAHRIGQ+NEVRVLRLMT
Sbjct:  1165 SDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMT 1224

Query:  1009 VNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEEDEEENAVPD 1068
             VNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSER QFLQTILHQDD E+EEEN VPD
Sbjct:  1225 VNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENEVPD 1284

Query:  1069 DETVNQMLARSEEEFQTYQRIDAERRKEQGK----KSRLIEVSELPDWLIKEDEEIEQWA 1124
             DE +N M+ARSEEE + ++R+DAER+KE  +    + RLI+ SELPDWL K+D+E+E++ 
Sbjct:  1285 DEMINMMIARSEEEIEIFKRMDAERKKEDEEIHPGRERLIDESELPDWLTKDDDEVERFH 1344

Query:  1125 FEAKEEEKALHMGRGSRQRKQVDYTDSLTEKEWLKAI 1161
             ++  E+     +GRGSRQRK+VDYTDSLTEKEWLKAI
Sbjct:  1345 YQYDEDTI---LGRGSRQRKEVDYTDSLTEKEWLKAI 1378
GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS;IDA
GO:0016887 "ATPase activity" evidence=ISS
GO:0008094 "DNA-dependent ATPase activity" evidence=NAS
GO:0003713 "transcription coactivator activity" evidence=ISS;NAS
GO:0005634 "nucleus" evidence=IDA;NAS
GO:0048096 "chromatin-mediated maintenance of transcription" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0035060 "brahma complex" evidence=IDA;TAS
GO:0048477 "oogenesis" evidence=TAS
GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IGI
GO:0035172 "hemocyte proliferation" evidence=TAS
GO:0003677 "DNA binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP
GO:0048666 "neuron development" evidence=IMP
GO:0007517 "muscle organ development" evidence=IMP
GO:0048813 "dendrite morphogenesis" evidence=IMP
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0007409 "axonogenesis" evidence=IMP
GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI
GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP
GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP
GO:0045742 "positive regulation of epidermal growth factor receptor signaling pathway" evidence=IMP
GO:0070983 "dendrite guidance" evidence=IMP
GO:0022008 "neurogenesis" evidence=IMP
GO:0043974 "histone H3-K27 acetylation" evidence=IMP
MGI|MGI:88192 Smarca4 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621728 Smarca4 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V790 Smarca4 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, isoform CRA_b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A7Z019 SMARCA4 "Transcription activator BRG1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJ89 SMARCA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1M6Y4 Smarca4 "Transcription activator BRG1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030605-1 smarca4 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJ46 SMARCA4 "Transcription activator BRG1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2F7 E1C2F7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UTN6SNF21_SCHPO3, ., 6, ., 4, ., -0.52970.57620.6396yesN/A
Q8K1P7SMCA4_RAT3, ., 6, ., 4, ., -0.62620.86320.7123yesN/A
P51532SMCA4_HUMAN3, ., 6, ., 4, ., -0.61210.86400.6982yesN/A
A7Z019SMCA4_BOVIN3, ., 6, ., 4, ., -0.62790.86170.7141yesN/A
P22082SNF2_YEAST3, ., 6, ., 4, ., -0.56210.47850.3740yesN/A
Q3TKT4SMCA4_MOUSE3, ., 6, ., 4, ., -0.62620.86320.7123yesN/A
P25439BRM_DROME3, ., 6, ., 4, ., 1, 20.68000.88050.7155yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.120.946
3rd Layer3.6.40.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1331
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 1e-166
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 1e-125
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 1e-105
cd05516107 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su 1e-43
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 8e-32
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 2e-29
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 2e-27
cd05515105 cd05515, Bromo_polybromo_V, Bromodomain, polybromo 4e-27
smart00297107 smart00297, BROMO, bromo domain 6e-27
cd0436999 cd04369, Bromodomain, Bromodomain 1e-25
cd05519103 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam 5e-24
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 1e-23
smart0049082 smart00490, HELICc, helicase superfamily c-termina 3e-23
cd05518103 cd05518, Bromo_polybromo_IV, Bromodomain, polybrom 3e-23
cd05517103 cd05517, Bromo_polybromo_II, Bromodomain, polybrom 2e-21
cd05524113 cd05524, Bromo_polybromo_I, Bromodomain, polybromo 6e-19
smart0057373 smart00573, HSA, domain in helicases and associate 1e-18
pfam0043984 pfam00439, Bromodomain, Bromodomain 2e-18
COG5076 371 COG5076, COG5076, Transcription factor involved in 6e-18
cd05522104 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i 1e-17
cd05520103 cd05520, Bromo_polybromo_III, Bromodomain, polybro 1e-16
cd05525106 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa 6e-16
pfam0752973 pfam07529, HSA, HSA 3e-15
cd05509101 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s 6e-14
cd05521106 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in 1e-10
cd05504115 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o 1e-10
cd0551398 cd05513, Bromo_brd7_like, Bromodomain, brd7_like s 2e-09
pfam0753345 pfam07533, BRK, BRK domain 8e-09
cd0550597 cd05505, Bromo_WSTF_like, Bromodomain; Williams sy 8e-09
cd05510112 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s 1e-08
cd05511112 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf 1e-08
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-08
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 2e-08
cd05528112 cd05528, Bromo_AAA, Bromodomain; sub-family co-occ 2e-08
cd05529128 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe 2e-08
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 4e-08
pfam0888037 pfam08880, QLQ, QLQ 4e-08
cd05497107 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like 4e-08
cd05499102 cd05499, Bromo_BDF1_2_II, Bromodomain 8e-08
cd0550699 cd05506, Bromo_plant1, Bromodomain, uncharacterize 1e-07
cd05498102 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik 1e-07
cd0551298 cd05512, Bromo_brd1_like, Bromodomain; brd1_like s 2e-07
smart0059245 smart00592, BRK, domain in transcription and CHROM 2e-07
cd05495108 cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub 5e-07
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 6e-07
cd0550397 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA 7e-07
cd05500103 cd05500, Bromo_BDF1_2_I, Bromodomain 1e-06
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-06
cd05496119 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I 6e-06
smart0095136 smart00951, QLQ, QLQ is named after the conserved 7e-06
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 8e-06
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 1e-05
cd05502109 cd05502, Bromo_tif1_like, Bromodomain; tif1_like s 1e-05
pfam11496279 pfam11496, HDA2-3, Class II histone deacetylase co 3e-05
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 5e-05
cd05526110 cd05526, Bromo_polybromo_VI, Bromodomain, polybrom 5e-05
PRK14965576 PRK14965, PRK14965, DNA polymerase III subunits ga 1e-04
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 1e-04
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 2e-04
pfam11029136 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP 2e-04
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 4e-04
cd0550899 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf 5e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 7e-04
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 0.001
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.001
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.001
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PRK04195482 PRK04195, PRK04195, replication factor C large sub 0.002
cd05507104 cd05507, Bromo_brd8_like, Bromodomain, brd8_like s 0.002
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 0.002
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.003
pfam04147 809 pfam04147, Nop14, Nop14-like family 0.003
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 0.004
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information 
 Score =  524 bits (1351), Expect = e-166
 Identities = 257/588 (43%), Positives = 367/588 (62%), Gaps = 35/588 (5%)

Query: 497  DEDSEKSKEKTSGENENKEKNKGEDDEYNKNAMEEATYYSIAHTVHEIVTEQASILVNGK 556
            D+ +   K K  G + +K   + ED+EY K   +             ++ + + I   GK
Sbjct: 116  DQSASAKKAKGRGRHASKLTEEEEDEEYLKEEEDGLGGSG----GTRLLVQPSCI--KGK 169

Query: 557  LKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS 616
            +++YQ+ GL W++ L+ N +NGILADEMGLGKT+QTI+L+ YL E + + GP +++ P S
Sbjct: 170  MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKS 229

Query: 617  TLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQ-MKASKFNVLLTTYEYVIKDKGPLAK 675
            TL NW  E  R+ P +  V + G+P  R   + + + A KF+V +T++E  IK+K  L +
Sbjct: 230  TLGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKR 289

Query: 676  LHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSI 735
              W+Y+IIDE HR+KN +  L+  +  F    +RLL+TGTPLQN L ELWALLNFLLP I
Sbjct: 290  FSWRYIIIDEAHRIKNENSLLSKTMRLF-STNYRLLITGTPLQNNLHELWALLNFLLPEI 348

Query: 736  FKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKV 795
            F S  TF++WF      +GE    N+++ +  +++LHKVLRPFLLRRLK +VE  LP K 
Sbjct: 349  FSSAETFDEWF----QISGE----NDQQEV--VQQLHKVLRPFLLRRLKSDVEKGLPPKK 398

Query: 796  EYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMF 855
            E I+K  MS +QK  Y+ +  K + + +         G  K L+N  +QLRK CNHP++F
Sbjct: 399  ETILKVGMSQMQKQYYKALLQKDLDVVNAG-------GERKRLLNIAMQLRKCCNHPYLF 451

Query: 856  QNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILE 915
            Q  E        G    +G  L   SGK  LLD++LPKLK    RVL+F QMT+L++ILE
Sbjct: 452  QGAEP-------GPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILE 504

Query: 916  DYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII 975
            DY  YRG++Y R+DG T  EDR   +  FN P SE F+F+LSTRAGGLG+NL TAD VI+
Sbjct: 505  DYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564

Query: 976  FDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAG- 1034
            +DSDWNP  DLQAQDRAHRIGQK EV+V R  T  ++EE+++  A  KL +D  VIQ G 
Sbjct: 565  YDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 624

Query: 1035 MFDQKSTGSERHQFLQTILHQDDEEDEEENAVPDDETVNQMLARSEEE 1082
            + +QK+   +  + LQ + +  +     +++   DE +++++A+ EE 
Sbjct: 625  LAEQKTVNKD--ELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEA 670

Length = 1033
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V Back     alignment and domain information
>gnl|CDD|197636 smart00297, BROMO, bromo domain Back     alignment and domain information
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV Back     alignment and domain information
>gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II Back     alignment and domain information
>gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I Back     alignment and domain information
>gnl|CDD|214727 smart00573, HSA, domain in helicases and associated with SANT domains Back     alignment and domain information
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III Back     alignment and domain information
>gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family Back     alignment and domain information
>gnl|CDD|219455 pfam07529, HSA, HSA Back     alignment and domain information
>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup Back     alignment and domain information
>gnl|CDD|203672 pfam07533, BRK, BRK domain Back     alignment and domain information
>gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily Back     alignment and domain information
>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|204086 pfam08880, QLQ, QLQ Back     alignment and domain information
>gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain Back     alignment and domain information
>gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily Back     alignment and domain information
>gnl|CDD|197800 smart00592, BRK, domain in transcription and CHROMO domain helicases Back     alignment and domain information
>gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>gnl|CDD|214931 smart00951, QLQ, QLQ is named after the conserved Gln, Leu, Gln motif Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily Back     alignment and domain information
>gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|99956 cd05526, Bromo_polybromo_VI, Bromodomain, polybromo repeat VI Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2) Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1331
KOG0386|consensus1157 100.0
KOG0385|consensus971 100.0
KOG0384|consensus 1373 100.0
KOG0391|consensus 1958 100.0
KOG0388|consensus1185 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0389|consensus941 100.0
KOG0387|consensus923 100.0
KOG0392|consensus1549 100.0
KOG1015|consensus1567 100.0
KOG0390|consensus776 100.0
KOG1002|consensus791 100.0
KOG4439|consensus901 100.0
KOG1016|consensus 1387 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1000|consensus689 100.0
PRK04914956 ATP-dependent helicase HepA; Validated 100.0
KOG0383|consensus696 100.0
KOG1001|consensus674 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
PRK13766773 Hef nuclease; Provisional 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
KOG0298|consensus 1394 99.97
PHA02558501 uvsW UvsW helicase; Provisional 99.97
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.97
KOG0330|consensus476 99.96
PTZ00110545 helicase; Provisional 99.96
KOG0331|consensus519 99.96
KOG0354|consensus746 99.95
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.95
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.95
KOG0338|consensus691 99.95
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.95
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.94
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.94
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.94
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.94
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.94
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.94
KOG1123|consensus776 99.93
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.93
PTZ00424401 helicase 45; Provisional 99.93
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.93
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.93
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 99.93
cd05516107 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s 99.92
KOG0342|consensus543 99.92
cd05525106 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 99.92
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 99.91
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.91
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.91
cd05524113 Bromo_polybromo_I Bromodomain, polybromo repeat I. 99.91
cd05517103 Bromo_polybromo_II Bromodomain, polybromo repeat I 99.91
cd05515105 Bromo_polybromo_V Bromodomain, polybromo repeat V. 99.91
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.91
KOG0345|consensus567 99.91
KOG0340|consensus442 99.91
cd05518103 Bromo_polybromo_IV Bromodomain, polybromo repeat I 99.91
PRK106891147 transcription-repair coupling factor; Provisional 99.9
cd05520103 Bromo_polybromo_III Bromodomain, polybromo repeat 99.9
cd05519103 Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci 99.9
KOG0350|consensus620 99.9
KOG0328|consensus400 99.9
KOG0343|consensus758 99.9
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.89
PRK13767 876 ATP-dependent helicase; Provisional 99.89
cd05521106 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik 99.89
cd05526110 Bromo_polybromo_VI Bromodomain, polybromo repeat V 99.89
KOG0333|consensus673 99.89
cd05496119 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub 99.88
cd0550597 Bromo_WSTF_like Bromodomain; Williams syndrome tra 99.88
cd05522104 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l 99.88
PRK02362737 ski2-like helicase; Provisional 99.88
cd05495108 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb 99.88
cd05497107 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily 99.87
KOG0347|consensus731 99.87
KOG0348|consensus708 99.87
KOG0335|consensus482 99.86
cd05504115 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li 99.86
cd05510112 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. 99.86
cd05507104 Bromo_brd8_like Bromodomain, brd8_like subgroup. I 99.86
cd0550899 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC 99.86
PRK00254720 ski2-like helicase; Provisional 99.86
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.86
KOG0339|consensus731 99.86
cd0550397 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s 99.85
KOG0341|consensus610 99.85
PRK01172674 ski2-like helicase; Provisional 99.85
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.85
cd05509101 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. 99.85
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.85
cd05501102 Bromo_SP100C_like Bromodomain, SP100C_like subfami 99.84
cd05499102 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam 99.84
cd05502109 Bromo_tif1_like Bromodomain; tif1_like subfamily. 99.84
cd0551398 Bromo_brd7_like Bromodomain, brd7_like subgroup. T 99.84
cd05528112 Bromo_AAA Bromodomain; sub-family co-occurring wit 99.84
cd0551298 Bromo_brd1_like Bromodomain; brd1_like subfamily. 99.84
cd05511112 Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum 99.83
KOG0336|consensus629 99.83
cd05498102 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil 99.83
KOG0326|consensus459 99.83
KOG4284|consensus 980 99.83
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.82
cd0550699 Bromo_plant1 Bromodomain, uncharacterized subfamil 99.82
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.82
cd05500103 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami 99.82
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.81
PRK09401 1176 reverse gyrase; Reviewed 99.81
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.81
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.81
cd05529128 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like 99.8
KOG0332|consensus477 99.8
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.79
PHA02653675 RNA helicase NPH-II; Provisional 99.79
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.79
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.78
COG4096875 HsdR Type I site-specific restriction-modification 99.78
KOG0346|consensus569 99.78
KOG1474|consensus 640 99.78
smart00297107 BROMO bromo domain. 99.77
KOG0334|consensus997 99.77
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.76
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.74
KOG0344|consensus593 99.74
PRK05580679 primosome assembly protein PriA; Validated 99.73
COG1205 851 Distinct helicase family with a unique C-terminal 99.73
KOG0327|consensus397 99.73
PRK14701 1638 reverse gyrase; Provisional 99.72
COG1204766 Superfamily II helicase [General function predicti 99.71
cd05492109 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family 99.71
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.71
cd0436999 Bromodomain Bromodomain. Bromodomains are found in 99.71
PF0043984 Bromodomain: Bromodomain; InterPro: IPR001487 Brom 99.71
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.7
COG5076 371 Transcription factor involved in chromatin remodel 99.69
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.67
KOG0337|consensus529 99.67
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.66
COG4889 1518 Predicted helicase [General function prediction on 99.66
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.65
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.65
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.65
KOG0351|consensus941 99.64
PRK09694878 helicase Cas3; Provisional 99.64
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.64
COG1202830 Superfamily II helicase, archaea-specific [General 99.61
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.61
PRK05298652 excinuclease ABC subunit B; Provisional 99.6
KOG0352|consensus641 99.6
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.59
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.58
KOG0353|consensus695 99.57
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.56
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.53
KOG0952|consensus 1230 99.52
KOG1245|consensus1404 99.52
smart00487201 DEXDc DEAD-like helicases superfamily. 99.51
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.5
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.49
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.47
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.44
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.43
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.4
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.38
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.38
KOG0329|consensus387 99.35
smart0049082 HELICc helicase superfamily c-terminal domain. 99.35
KOG1924|consensus1102 99.32
KOG0947|consensus 1248 99.3
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.29
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.27
KOG1827|consensus 629 99.26
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.26
KOG0951|consensus 1674 99.24
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.22
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.17
KOG0349|consensus725 99.13
KOG1472|consensus720 99.12
COG0610962 Type I site-specific restriction-modification syst 99.08
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 99.07
PF0752973 HSA: HSA; InterPro: IPR006562 This domain of unkno 99.07
smart0057373 HSA domain in helicases and associated with SANT d 99.07
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.02
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.02
PF11496297 HDA2-3: Class II histone deacetylase complex subun 98.98
PF1461974 SnAC: Snf2-ATP coupling, chromatin remodelling com 98.97
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.94
KOG0948|consensus 1041 98.88
KOG0950|consensus1008 98.87
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.86
CHL00122870 secA preprotein translocase subunit SecA; Validate 98.84
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.82
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.77
KOG0949|consensus1330 98.74
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.74
PF0888037 QLQ: QLQ; InterPro: IPR014978 QLQ is named after t 98.74
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.74
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 98.71
KOG0955|consensus 1051 98.71
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.69
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 98.65
KOG1513|consensus1300 98.64
cd05494114 Bromodomain_1 Bromodomain; uncharacterized subfami 98.63
cd05491119 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, 98.63
KOG0920|consensus924 98.6
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 98.58
KOG0926|consensus 1172 98.52
KOG0922|consensus674 98.51
PRK15483 986 type III restriction-modification system StyLTI en 98.49
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 98.46
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 98.45
KOG0924|consensus1042 98.42
KOG0008|consensus1563 98.41
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.39
KOG0008|consensus 1563 98.33
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.21
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.21
PHA032473151 large tegument protein UL36; Provisional 98.2
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 98.15
KOG0923|consensus902 98.14
KOG1472|consensus 720 98.14
PRK14873665 primosome assembly protein PriA; Provisional 98.14
PF13871278 Helicase_C_4: Helicase_C-like 98.08
KOG0953|consensus700 98.03
KOG4150|consensus1034 97.94
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.93
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 97.92
KOG1828|consensus 418 97.69
KOG1474|consensus 640 97.64
KOG1828|consensus 418 97.62
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 97.31
PRK10536262 hypothetical protein; Provisional 97.26
COG3587 985 Restriction endonuclease [Defense mechanisms] 97.26
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.2
KOG0925|consensus699 97.19
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.06
KOG1802|consensus935 96.98
KOG1131|consensus755 96.89
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 96.87
KOG1803|consensus649 96.67
PF13892139 DBINO: DNA-binding domain 96.66
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 96.66
TIGR00376637 DNA helicase, putative. The gene product may repre 96.51
KOG1132|consensus945 96.48
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.46
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 96.33
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 96.32
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 96.09
KOG4849|consensus498 95.95
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 95.93
smart0059245 BRK domain in transcription and CHROMO domain heli 95.91
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 95.79
KOG0951|consensus1674 95.77
PF0753346 BRK: BRK domain; InterPro: IPR006576 BRK is a doma 95.75
KOG1923|consensus830 95.66
PRK04296190 thymidine kinase; Provisional 95.57
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 95.44
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 95.44
KOG4849|consensus498 95.3
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 95.25
COG3421812 Uncharacterized protein conserved in bacteria [Fun 95.19
PRK06526254 transposase; Provisional 95.09
smart00382148 AAA ATPases associated with a variety of cellular 95.06
PLN03025319 replication factor C subunit; Provisional 94.9
PRK09112351 DNA polymerase III subunit delta'; Validated 94.88
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 94.71
PRK07952244 DNA replication protein DnaC; Validated 94.7
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 94.58
KOG1805|consensus1100 94.52
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 94.47
PRK10875615 recD exonuclease V subunit alpha; Provisional 94.3
COG5076371 Transcription factor involved in chromatin remodel 94.24
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 94.22
PRK08116268 hypothetical protein; Validated 94.09
PRK08181269 transposase; Validated 94.06
PF0646566 DUF1087: Domain of Unknown Function (DUF1087); Int 94.01
KOG0989|consensus346 93.96
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 93.82
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 93.77
PRK06835329 DNA replication protein DnaC; Validated 93.72
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 93.66
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 93.59
KOG0442|consensus892 93.5
PRK08727233 hypothetical protein; Validated 93.42
PRK08084235 DNA replication initiation factor; Provisional 93.35
PRK05707328 DNA polymerase III subunit delta'; Validated 93.29
PF1324576 AAA_19: Part of AAA domain 93.18
PTZ001121164 origin recognition complex 1 protein; Provisional 93.18
PRK12402337 replication factor C small subunit 2; Reviewed 93.13
PRK00149450 dnaA chromosomal replication initiation protein; R 93.09
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 93.08
PRK153192039 AIDA autotransporter-like protein ShdA; Provisiona 93.07
COG1484254 DnaC DNA replication protein [DNA replication, rec 92.91
KOG0991|consensus333 92.9
PRK153192039 AIDA autotransporter-like protein ShdA; Provisiona 92.89
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 92.83
smart00492141 HELICc3 helicase superfamily c-terminal domain. 92.82
PRK06921266 hypothetical protein; Provisional 92.81
TIGR00362405 DnaA chromosomal replication initiator protein Dna 92.79
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 92.65
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 92.58
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 92.53
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 92.5
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 92.5
cd05493131 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- 92.28
CHL00181287 cbbX CbbX; Provisional 92.21
PRK14086617 dnaA chromosomal replication initiation protein; P 92.1
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 92.1
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 91.99
PRK14087450 dnaA chromosomal replication initiation protein; P 91.97
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 91.92
PRK14088440 dnaA chromosomal replication initiation protein; P 91.86
KOG1133|consensus821 91.8
PRK05642234 DNA replication initiation factor; Validated 91.78
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 91.76
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 91.65
PRK06893229 DNA replication initiation factor; Validated 91.65
PRK08769319 DNA polymerase III subunit delta'; Validated 91.6
PRK08903227 DnaA regulatory inactivator Hda; Validated 91.49
PF13173128 AAA_14: AAA domain 91.39
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 91.31
PRK07940394 DNA polymerase III subunit delta'; Validated 91.23
cd01124187 KaiC KaiC is a circadian clock protein primarily f 91.18
smart00491142 HELICc2 helicase superfamily c-terminal domain. 91.17
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 91.11
PHA03333752 putative ATPase subunit of terminase; Provisional 91.1
PHA02533534 17 large terminase protein; Provisional 91.01
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 90.98
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 90.94
PRK06871325 DNA polymerase III subunit delta'; Validated 90.81
PRK07471365 DNA polymerase III subunit delta'; Validated 90.69
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 90.66
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 90.65
KOG1984|consensus1007 90.44
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 90.39
PRK07993334 DNA polymerase III subunit delta'; Validated 90.34
PRK12377248 putative replication protein; Provisional 90.14
KOG0307|consensus1049 90.07
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 90.06
KOG2391|consensus365 90.02
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 89.95
PRK14974336 cell division protein FtsY; Provisional 89.94
PF00004132 AAA: ATPase family associated with various cellula 89.87
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 89.81
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 89.65
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 89.5
PRK00440319 rfc replication factor C small subunit; Reviewed 89.44
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 89.36
PRK06090319 DNA polymerase III subunit delta'; Validated 89.29
PRK04195482 replication factor C large subunit; Provisional 89.25
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 89.15
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 89.1
PHA02544316 44 clamp loader, small subunit; Provisional 89.07
PRK13889988 conjugal transfer relaxase TraA; Provisional 88.98
COG0470325 HolB ATPase involved in DNA replication [DNA repli 88.77
TIGR02928365 orc1/cdc6 family replication initiation protein. M 88.63
KOG0952|consensus1230 88.56
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 88.43
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 88.41
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 88.32
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 88.31
PF05308253 Mito_fiss_reg: Mitochondrial fission regulator; In 88.28
PRK08058329 DNA polymerase III subunit delta'; Validated 88.16
PRK12422445 chromosomal replication initiation protein; Provis 88.13
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 88.1
KOG0737|consensus386 87.9
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 87.79
PRK00411394 cdc6 cell division control protein 6; Reviewed 87.7
PRK10865857 protein disaggregation chaperone; Provisional 87.62
PRK06964342 DNA polymerase III subunit delta'; Validated 87.36
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 87.29
COG0593408 DnaA ATPase involved in DNA replication initiation 87.24
KOG1925|consensus817 87.22
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 86.95
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 86.68
KOG0559|consensus457 86.65
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 86.63
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 86.44
PHA03368738 DNA packaging terminase subunit 1; Provisional 86.43
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 86.42
KOG0307|consensus1049 86.24
PF07015231 VirC1: VirC1 protein; InterPro: IPR009744 This fam 86.21
TIGR00595505 priA primosomal protein N'. All proteins in this f 86.18
PRK00771437 signal recognition particle protein Srp54; Provisi 86.15
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 85.88
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 85.6
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 85.18
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 85.11
KOG1985|consensus887 85.07
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 84.93
PRK05580679 primosome assembly protein PriA; Validated 84.82
TIGR02688449 conserved hypothetical protein TIGR02688. Members 84.42
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 84.33
PRK08939306 primosomal protein DnaI; Reviewed 84.26
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 84.21
PRK13342413 recombination factor protein RarA; Reviewed 84.18
PTZ00293211 thymidine kinase; Provisional 83.99
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 83.98
PRK09183259 transposase/IS protein; Provisional 83.97
PRK08533230 flagellar accessory protein FlaH; Reviewed 83.91
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 83.91
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 83.66
PHA02244383 ATPase-like protein 83.64
PHA00012361 I assembly protein 83.51
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 83.48
PRK07399314 DNA polymerase III subunit delta'; Validated 83.27
KOG1984|consensus1007 83.25
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 83.12
PRK138261102 Dtr system oriT relaxase; Provisional 82.88
COG0552340 FtsY Signal recognition particle GTPase [Intracell 82.72
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 82.62
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 82.2
KOG4592|consensus728 82.02
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 81.84
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 81.8
TIGR00763775 lon ATP-dependent protease La. This protein is ind 81.63
KOG0740|consensus428 81.56
KOG2893|consensus341 81.4
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 81.39
COG4626546 Phage terminase-like protein, large subunit [Gener 81.32
PRK04132846 replication factor C small subunit; Provisional 81.32
PF00265176 TK: Thymidine kinase; InterPro: IPR001267 Thymidin 81.18
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 81.15
KOG1144|consensus1064 81.15
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 80.91
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 80.91
PHA03372668 DNA packaging terminase subunit 1; Provisional 80.9
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 80.65
CHL002062281 ycf2 Ycf2; Provisional 80.57
KOG3837|consensus523 80.46
CHL00176638 ftsH cell division protein; Validated 80.37
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 80.35
KOG1029|consensus1118 80.24
KOG0921|consensus 1282 80.16
COG2256436 MGS1 ATPase related to the helicase subunit of the 80.16
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 80.14
>KOG0386|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.3e-197  Score=1742.80  Aligned_cols=1004  Identities=61%  Similarity=0.925  Sum_probs=918.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHhHHHHHHHHHhhchHHHHHHHHHHHHHhhcccccccccChhhh
Q psy1544         197 LDPLIILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRALKVLNFQRQLRAEVIACARRDTTLETAVNVKAY  276 (1331)
Q Consensus       197 ~d~~~~~~~re~~i~~~i~~r~~el~~~l~~~~~~~~~~~~~~e~~~l~l~~~q~~~r~~~~~~~~~~~~~~~~~~~~~~  276 (1331)
                      ||++.+...++.+|+.+|.++++++++ ++.++.++++.+|.+|+++|+|+++|++||..+++|+..++++.++.|+.+|
T Consensus       128 l~~~~~~~~q~~~i~~~~~~~lq~~q~-~~~~~~~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~~~~n~~~~  206 (1157)
T KOG0386|consen  128 LDQQNINPMQQARIQFRMQAQLQELQQ-LARSLMGELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSETALNPKAF  206 (1157)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHHH-hhhcchHHHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccccccCHHHH
Confidence            999999999999999999999999999 8998899999999999999999999999999999999999999999999999


Q ss_pred             hhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544         277 KRTKRQGLKEARATEKLEKQQKVEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAEKEQKKEQ  356 (1331)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (1331)
                      +|.++++++++|+|++||+||+.+.|++++++|.+||.++++|+++|.++|+.+..+..+++++|+.||++.||++++++
T Consensus       207 ~R~~~q~~~~~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~  286 (1157)
T KOG0386|consen  207 KRGKRQTLSEARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRI  286 (1157)
T ss_pred             hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhhcccCCC
Q psy1544         357 ERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKEHKMEQKKKQDEESKKRKQSVKQKLMDTDG  436 (1331)
Q Consensus       357 ~~~~~~r~~~l~~~d~~~y~~~~~~~k~~r~~~ll~~t~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (1331)
                      +|++|+||++||+||+|||+||+|++||+||++||+|||+|+.+|+.+|+.||.+                   .  ++ 
T Consensus       287 ~r~ek~r~~~Lk~~DeE~Y~kl~dq~Kd~Rl~~LL~qt~~yl~sL~s~Vk~qk~~-------------------~--~~-  344 (1157)
T KOG0386|consen  287 DRIEKERASALKHNDEEGYRKLQDQKKDNRLSQLLSQTDSYLPSLSSVVKGQKSE-------------------N--PD-  344 (1157)
T ss_pred             HHhhHHHHHHHHHhhHHHHHHHHhhccccHHHHhhhhhhHHHHHHHHHHHHhhcc-------------------c--cc-
Confidence            9999999999999999999999999999999999999999999999999988731                   0  00 


Q ss_pred             CcccCccccccccccccchhhcccccccCCCCchhhHhhhhhhhcCCCCccccCCCcCCccccchhhhcccCCcchhhhc
Q psy1544         437 KVTLDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVADSDEENEDEDSEKSKEKTSGENENKEK  516 (1331)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  516 (1331)
                             .. .++|  ++..                                ..                         +
T Consensus       345 -------~~-~~~d--~~~i--------------------------------~~-------------------------~  357 (1157)
T KOG0386|consen  345 -------AN-SASD--ISGI--------------------------------SG-------------------------S  357 (1157)
T ss_pred             -------cc-hhhh--hhhh--------------------------------hh-------------------------h
Confidence                   00 0000  0000                                00                         0


Q ss_pred             ccCCchhhhhcchhhhhhhhcccchhhhhhhcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHH
Q psy1544         517 NKGEDDEYNKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALI  596 (1331)
Q Consensus       517 ~~~~~d~~~~~~~~~~~~~~~~~~~~e~~~~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li  596 (1331)
                      .+.+++++   .....+||+++|.+.|.+.+||++++||+|++||+.||+||+++|+|+.|||||||||||||||+|++|
T Consensus       358 ak~~~~d~---~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLi  434 (1157)
T KOG0386|consen  358 AKADVDDH---AESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLI  434 (1157)
T ss_pred             hcchhhhh---hhcchhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHH
Confidence            00000001   135578999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCccccc
Q psy1544         597 TYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKL  676 (1331)
Q Consensus       597 ~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~  676 (1331)
                      +||++.++..||+|||||+++|.||..||.+|+|++..++|+|.+..|+.+...+..++|+|++|||+++++++..|.++
T Consensus       435 tYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI  514 (1157)
T KOG0386|consen  435 TYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKI  514 (1157)
T ss_pred             HHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccc
Q psy1544         677 HWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEK  756 (1331)
Q Consensus       677 ~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~  756 (1331)
                      .|.++||||+|||||..|+++..+...|.+.+|+||||||+||++.|||+||||+.|.+|++...|.+||+.||+++|++
T Consensus       515 ~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek  594 (1157)
T KOG0386|consen  515 SWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEK  594 (1157)
T ss_pred             CCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchH
Q psy1544         757 VELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAK  836 (1331)
Q Consensus       757 ~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~  836 (1331)
                      +++++++...+++|||+||+||++||+|++|+..||++++.+++|.||+.|+.+|.++...+....+.    ..+.++++
T Consensus       595 ~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~----~~g~~g~k  670 (1157)
T KOG0386|consen  595 VELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDT----AKGKKGYK  670 (1157)
T ss_pred             ccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCc----hhccccch
Confidence            99999999999999999999999999999999999999999999999999999999999888776654    45677889


Q ss_pred             HHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHH
Q psy1544         837 ALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILED  916 (1331)
Q Consensus       837 ~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~  916 (1331)
                      .++|.+|+||+||||||+|..++..+....+.      .++|+.+||+++|+++|+++++.||+||+||+|+.++++|++
T Consensus       671 ~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~------~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEd  744 (1157)
T KOG0386|consen  671 PLFNTIMQLRKLCNHPYLFANVENSYTLHYDI------KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILED  744 (1157)
T ss_pred             hhhhHhHHHHHhcCCchhhhhhccccccccCh------hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHH
Confidence            99999999999999999999888777665543      689999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccC
Q psy1544         917 YFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG  996 (1331)
Q Consensus       917 ~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiG  996 (1331)
                      ||..++++|+++||+|+.++|..+++.||.|+++||+||+||+|||+|||||.||+||+||++|||+++.||.+||||||
T Consensus       745 yL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrig  824 (1157)
T KOG0386|consen  745 YLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG  824 (1157)
T ss_pred             HHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhcCcccCcCChhHHHHHHHHHhccCCcchhhhcCCCCHHHHHHHH
Q psy1544         997 QKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEEDEEENAVPDDETVNQML 1076 (1331)
Q Consensus       997 Q~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~g~~~~~~~~~e~~~~l~~il~~~~~~~~~~~~~~~~~~~n~~l 1076 (1331)
                      |+++|+|+|+++.++|||.|++.+..|++++++||++|+|++++++.+|+.+|+.+++.++++  +++++++++.||+++
T Consensus       825 q~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~--~~~~v~~~~~ln~~l  902 (1157)
T KOG0386|consen  825 QKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDE--EEEEVPDDEVLNSML  902 (1157)
T ss_pred             chhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCcc--ccccCCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999976654  348899999999999


Q ss_pred             HhCHHHHHHHHHHhHHHHHhhcc---cCcccccCCCchhhhcccHHHHHHHHHHHHHHHHhhcCCCcccccccccccchh
Q psy1544        1077 ARSEEEFQTYQRIDAERRKEQGK---KSRLIEVSELPDWLIKEDEEIEQWAFEAKEEEKALHMGRGSRQRKQVDYTDSLT 1153 (1331)
Q Consensus      1077 ~r~~~e~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~R~rk~v~y~d~lt 1153 (1331)
                      +|+++||+.|++||.++.+++..   ++||++++|+|+|+.+.+.++++...+++...   .+|||+|+|++|+|+|.+|
T Consensus       903 arseeE~~~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~~~~~~~---~~~rg~r~Rkev~y~d~~t  979 (1157)
T KOG0386|consen  903 ARSEEEFELFHKMDEERRATENQQEKKPRLVEEAELPADIYKRDQGVERLSEEEEEEK---ILGRGRRARKEVVYSDRLT  979 (1157)
T ss_pred             hcchHHHHHHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhhhhhhhc---cccccccccceeecccccc
Confidence            99999999999999999986654   67999999999999998887777665544443   5899999999999999999


Q ss_pred             hHHHHhhhcCCCCCCchhhhhHHHHhhhhccccCCCCCCCCCCCccccccccccccchhhhHHHHHHHHHHHHHHHHhhc
Q psy1544        1154 EKEWLKAIDDGVEYDDEEEEEEEEVRSKRKGKRRKKTEDDDEEPSTSKKRKKEKEKDREKDQAKLKKTLKKIMRVVIKYT 1233 (1331)
Q Consensus      1154 e~e~l~~~e~~~d~~~~~ee~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 1233 (1331)
                      |.+|+++++++++++++.+.       ++++++.+   ..++.+...+++ +..  .+..      ..|..|+....++.
T Consensus       980 e~q~~k~~e~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~-~~~--~~~~------~~~~~i~~~~~~~~ 1040 (1157)
T KOG0386|consen  980 EMQWLKENESVNKEDSEEEE-------RRRGRKKS---SLDTRPLSQKKR-KLR--PRSP------KQALKIASTSIKYK 1040 (1157)
T ss_pred             hhhhhhhccccccccchhhh-------hccCCCcc---ccccccchhhcc-ccc--CCCh------HHHHHHHHHHHhcc
Confidence            99999999887765544332       22333332   112222222222 111  1111      67889999999999


Q ss_pred             CCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q psy1544        1234 DSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLE 1313 (1331)
Q Consensus      1234 d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~ 1313 (1331)
                      +++||.+++.|..+|+++.+||||++|++||++..|+++|..+.|.++.+...||.++|.||++||++||.||.||..|+
T Consensus      1041 ~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~ 1120 (1157)
T KOG0386|consen 1041 DSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQ 1120 (1157)
T ss_pred             cccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCC
Q psy1544        1314 SVFTKARQRVESGE 1327 (1331)
Q Consensus      1314 ~~f~~~~~~~~~~~ 1327 (1331)
                      .+|.....++..++
T Consensus      1121 ~~~~~~~~~~~~~~ 1134 (1157)
T KOG0386|consen 1121 SVFKSARQEISKED 1134 (1157)
T ss_pred             HHHhhhHHHHhccc
Confidence            99999999887543

>KOG0385|consensus Back     alignment and domain information
>KOG0384|consensus Back     alignment and domain information
>KOG0391|consensus Back     alignment and domain information
>KOG0388|consensus Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0389|consensus Back     alignment and domain information
>KOG0387|consensus Back     alignment and domain information
>KOG0392|consensus Back     alignment and domain information
>KOG1015|consensus Back     alignment and domain information
>KOG0390|consensus Back     alignment and domain information
>KOG1002|consensus Back     alignment and domain information
>KOG4439|consensus Back     alignment and domain information
>KOG1016|consensus Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000|consensus Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0383|consensus Back     alignment and domain information
>KOG1001|consensus Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0298|consensus Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0330|consensus Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0331|consensus Back     alignment and domain information
>KOG0354|consensus Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0338|consensus Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG1123|consensus Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>KOG0342|consensus Back     alignment and domain information
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I Back     alignment and domain information
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II Back     alignment and domain information
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0345|consensus Back     alignment and domain information
>KOG0340|consensus Back     alignment and domain information
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III Back     alignment and domain information
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>KOG0350|consensus Back     alignment and domain information
>KOG0328|consensus Back     alignment and domain information
>KOG0343|consensus Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI Back     alignment and domain information
>KOG0333|consensus Back     alignment and domain information
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily Back     alignment and domain information
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>KOG0347|consensus Back     alignment and domain information
>KOG0348|consensus Back     alignment and domain information
>KOG0335|consensus Back     alignment and domain information
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily Back     alignment and domain information
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup Back     alignment and domain information
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0339|consensus Back     alignment and domain information
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>KOG0341|consensus Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily Back     alignment and domain information
>cd05499 Bromo_BDF1_2_II Bromodomain Back     alignment and domain information
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily Back     alignment and domain information
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup Back     alignment and domain information
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily Back     alignment and domain information
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily Back     alignment and domain information
>KOG0336|consensus Back     alignment and domain information
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>KOG0326|consensus Back     alignment and domain information
>KOG4284|consensus Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>cd05500 Bromo_BDF1_2_I Bromodomain Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>KOG0332|consensus Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0346|consensus Back     alignment and domain information
>KOG1474|consensus Back     alignment and domain information
>smart00297 BROMO bromo domain Back     alignment and domain information
>KOG0334|consensus Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0344|consensus Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0327|consensus Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>cd04369 Bromodomain Bromodomain Back     alignment and domain information
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0337|consensus Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>KOG0351|consensus Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG0352|consensus Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0353|consensus Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0952|consensus Back     alignment and domain information
>KOG1245|consensus Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>KOG0329|consensus Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>KOG1924|consensus Back     alignment and domain information
>KOG0947|consensus Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1827|consensus Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0349|consensus Back     alignment and domain information
>KOG1472|consensus Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [] Back     alignment and domain information
>smart00573 HSA domain in helicases and associated with SANT domains Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>KOG0948|consensus Back     alignment and domain information
>KOG0950|consensus Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0949|consensus Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0955|consensus Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1513|consensus Back     alignment and domain information
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily Back     alignment and domain information
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information
>KOG0920|consensus Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0926|consensus Back     alignment and domain information
>KOG0922|consensus Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG0924|consensus Back     alignment and domain information
>KOG0008|consensus Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>KOG0008|consensus Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0923|consensus Back     alignment and domain information
>KOG1472|consensus Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>KOG0953|consensus Back     alignment and domain information
>KOG4150|consensus Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1828|consensus Back     alignment and domain information
>KOG1474|consensus Back     alignment and domain information
>KOG1828|consensus Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG0925|consensus Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG1802|consensus Back     alignment and domain information
>KOG1131|consensus Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG1803|consensus Back     alignment and domain information
>PF13892 DBINO: DNA-binding domain Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG1132|consensus Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>KOG4849|consensus Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>smart00592 BRK domain in transcription and CHROMO domain helicases Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO) Back     alignment and domain information
>KOG1923|consensus Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>KOG4849|consensus Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>KOG1805|consensus Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function Back     alignment and domain information
>KOG0989|consensus Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0442|consensus Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0991|consensus Back     alignment and domain information
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG1133|consensus Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1984|consensus Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>KOG0307|consensus Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG2391|consensus Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>KOG0952|consensus Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>KOG0737|consensus Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1925|consensus Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>KOG0559|consensus Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>KOG0307|consensus Back     alignment and domain information
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>KOG1985|consensus Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>PHA00012 I assembly protein Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG1984|consensus Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG4592|consensus Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>KOG0740|consensus Back     alignment and domain information
>KOG2893|consensus Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>KOG1144|consensus Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>KOG3837|consensus Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>KOG0921|consensus Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1331
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 1e-120
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 1e-57
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 4e-55
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 4e-53
2grc_A129 1.5 A Structure Of Bromodomain From Human Brg1 Prot 8e-28
3uvd_A124 Crystal Structure Of The Bromodomain Of Human Trans 8e-28
2h60_A128 Solution Structure Of Human Brg1 Bromodomain Length 9e-28
2dat_A123 Solution Structure Of The Bromodomain Of Human SwiS 1e-25
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 2e-19
3g0j_A124 Crystal Structure Of The Fifth Bromodomain Of Human 2e-17
2yqd_A120 Solution Structure Of The Fifth Bromodomain From Mo 4e-17
3ljw_A120 Crystal Structure Of The Second Bromodomain Of Huma 7e-16
2ktb_B121 Solution Structure Of The Second Bromodomain Of Hum 7e-16
3hmf_A116 Crystal Structure Of The Second Bromodomain Of Huma 8e-16
3tlp_A150 Crystal Structure Of The Fourth Bromodomain Of Huma 9e-12
3iu5_A116 Crystal Structure Of The First Bromodomain Of Human 4e-10
3k2j_A130 Crystal Structure Of The 3rd Bromodomain Of Human P 2e-09
2r0v_A346 Structure Of The Rsc4 Tandem Bromodomain Acetylated 2e-09
2r10_A361 Structure Of An Acetylated Rsc4 Tandem Bromodomain 2e-09
2r0s_A285 Crystal Structure Of The Rsc4 Tandem Bromodomain Le 3e-08
2r0y_A311 Structure Of The Rsc4 Tandem Bromodomain In Complex 4e-08
3mqm_A126 Crystal Structure Of The Bromodomain Of Human Ash1l 4e-08
2nxb_A123 Crystal Structure Of Human Bromodomain Containing P 2e-06
2yw5_A138 Solution Structure Of The Bromodomain From Human Br 2e-06
2l5e_A128 Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt 2e-06
4a9e_A154 N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- 3e-06
2ydw_A153 Crystal Structure Of The First Bromodomain Of Human 3e-06
3nxb_A116 Crystal Structure Of The Bromodomain Of Human Cecr2 7e-06
3jvj_A131 Crystal Structure Of The Bromodomain 1 In Mouse Brd 9e-06
4don_A145 Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy 1e-05
2oss_A127 Crystal Structure Of The Bromo Domain 1 In Human Br 1e-05
2rfj_A119 Crystal Structure Of The Bromo Domain 1 In Human Br 1e-05
4hbw_A127 Crystal Structure Of The First Bromodomain Of Human 1e-05
2wp2_A120 Structure Of Brdt Bromodomain Bd1 Bound To A Diacet 1e-05
1e6i_A121 Bromodomain From Gcn5 Complexed With Acetylated H4 2e-05
2i7k_A117 Solution Structure Of The Bromodomain Of Human Brd7 3e-05
3qzv_A174 Crystal Structure Of Bptf Phd-Linker-Bromo In Compl 5e-05
3q2e_A123 Crystal Structure Of The Second Bromodomain Of Huma 5e-05
2ri7_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 6e-05
3rcw_A135 Crystal Structure Of The Bromodomain Of Human Brd1 7e-05
3uv2_A126 Crystal Structure Of The Bromodomain Of Human Nucle 7e-05
3qzt_A115 Crystal Structure Of Bptf Bromo In Complex With His 8e-05
3qzs_A115 Crystal Structure Of Bptf Bromo In Complex With His 8e-05
3mb3_A135 Crystal Structure Of The Second Bromodomain Of Plec 1e-04
1n72_A118 Structure And Ligand Of A Histone Acetyltransferase 3e-04
3gg3_A119 Crystal Structure Of The Bromodomain Of Human Pcaf 3e-04
3aqa_A128 Crystal Structure Of The Human Brd2 Bd1 Bromodomain 3e-04
3hme_A123 Crystal Structure Of Human Bromodomain Containing 9 4e-04
3dai_A130 Crystal Structure Of The Bromodomain Of The Human A 4e-04
1x0j_A122 Crystal Structure Analysis Of The N-Terminal Bromod 4e-04
2d9e_A121 Solution Structure Of The Bromodomain Of Peregrin L 4e-04
3o33_A184 Crystal Structure Of Trim24 Phd-Bromo In The Free S 5e-04
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure 
Iteration: 1

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/521 (43%), Positives = 328/521 (62%), Gaps = 36/521 (6%)
Query: 532  ATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQ 591
            ++ Y+      E ++ Q   +  G+L+++Q+ G+ WM  L++   NGILADEMGLGKT+Q
Sbjct: 212  SSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQ 271
Query: 592  TIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQ--- 648
            T+A I++L+  ++ NGP +I+VPLST+  W   FE+WAP +N + Y G+   R T++   
Sbjct: 272  TVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYE 331
Query: 649  -------AQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILN 701
                      K  KFNVLLTTYEY++KD+  L  + W++M +DE HR+KN    L   LN
Sbjct: 332  FYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLN 391
Query: 702  TFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNE 761
            +F VA +R+L+TGTPLQN + EL AL+NFL+P  F    T +Q  +          E  +
Sbjct: 392  SFKVA-NRMLITGTPLQNNIKELAALVNFLMPGRF----TIDQEID---------FENQD 437
Query: 762  EETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGI-L 820
            EE    I  LH+ ++PF+LRRLKK+VE  LP K E I++ ++S +Q   Y+++ TK    
Sbjct: 438  EEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSA 497
Query: 821  LTDGSEXXXXXXXXXXXLMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYR- 879
            LT G++           L+N + +L+K  NHP++F N EE+     G  G ++  ++ R 
Sbjct: 498  LTAGAKGGHFS------LLNIMNELKKASNHPYLFDNAEERVLQKFG-DGKMTRENVLRG 550
Query: 880  ---VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAED 936
                SGK  LLD++L +LK  GHRVL+F QM ++++IL DY S +G  + RLDGT  +  
Sbjct: 551  LIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQ 610
Query: 937  RGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 996
            R   +  FN+PDS  F+F+LSTRAGGLG+NL TADTV+IFDSDWNP  DLQA  RAHRIG
Sbjct: 611  RRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 670
Query: 997  QKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFD 1037
            QKN V V RL++ ++VEE +L  AR K+ ++  +I  G+ D
Sbjct: 671  QKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTD 711
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A Central Atpase Of SwiSNF REMODELING COMPLEX Length = 129 Back     alignment and structure
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human Transcription Activator Brg1 (Smarca4) In Complex With N-Methyl-2-Pyrrolidone Length = 124 Back     alignment and structure
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain Length = 128 Back     alignment and structure
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF Related Matrix Associated Actin Dependent Regulator Of Cromatin Subfamily A Member 2 Length = 123 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124 Back     alignment and structure
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse Polybromo-1 Length = 120 Back     alignment and structure
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 Back     alignment and structure
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 Back     alignment and structure
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 Back     alignment and structure
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 130 Back     alignment and structure
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25 Length = 346 Back     alignment and structure
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone Chimera Length = 361 Back     alignment and structure
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain Length = 285 Back     alignment and structure
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With An Acetylated H3 Peptide Length = 311 Back     alignment and structure
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l Length = 126 Back     alignment and structure
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 Back     alignment and structure
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 Back     alignment and structure
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 Back     alignment and structure
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 Back     alignment and structure
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 Back     alignment and structure
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 Back     alignment and structure
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 Back     alignment and structure
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 Back     alignment and structure
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 Back     alignment and structure
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 Back     alignment and structure
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 Back     alignment and structure
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 Back     alignment and structure
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 Back     alignment and structure
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117 Back     alignment and structure
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 Back     alignment and structure
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 Back     alignment and structure
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 Back     alignment and structure
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 Back     alignment and structure
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 Back     alignment and structure
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 Back     alignment and structure
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 Back     alignment and structure
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 Back     alignment and structure
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 Back     alignment and structure
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 Back     alignment and structure
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 Back     alignment and structure
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 Back     alignment and structure
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130 Back     alignment and structure
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 Back     alignment and structure
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 Back     alignment and structure
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1331
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 0.0
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 0.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-127
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 2e-83
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 3e-66
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 1e-61
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 4e-39
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 4e-39
2dat_A123 Possible global transcription activator SNF2L2; br 5e-39
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 1e-38
2grc_A129 Probable global transcription activator SNF2L4; br 6e-37
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 7e-37
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 7e-37
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 3e-36
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 1e-29
2r0y_A311 Chromatin structure-remodeling complex protein RSC 9e-28
2r0y_A 311 Chromatin structure-remodeling complex protein RSC 3e-24
2r10_A361 Chromatin structure-remodeling complex protein RSC 1e-26
2r10_A 361 Chromatin structure-remodeling complex protein RSC 1e-25
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 1e-23
3aad_A 292 Transcription initiation factor TFIID subunit 1; p 3e-22
3aad_A292 Transcription initiation factor TFIID subunit 1; p 2e-21
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 3e-21
3uv5_A 265 Transcription initiation factor TFIID subunit 1; t 3e-20
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 2e-20
3uv4_A158 Second bromodomain of human transcription initiat 7e-20
3nxb_A116 CAT eye syndrome critical region protein 2; struct 2e-19
3d7c_A112 General control of amino acid synthesis protein 5; 2e-19
2d9e_A121 Peregrin; four-helix bundle, transcription activat 1e-18
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 1e-18
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 1e-18
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 2e-18
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 3e-18
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 3e-18
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 4e-18
3fkm_X166 Signaling protein; bromodomain, malaria, structura 5e-18
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 6e-18
3p1f_A119 CREB-binding protein; structural genomics consorti 1e-17
4alg_A154 Bromodomain-containing protein 2; signaling protei 2e-17
3rcw_A135 Bromodomain-containing protein 1; transcription, s 4e-17
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 5e-17
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 2e-16
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 2e-15
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 2e-15
3dai_A130 ATPase family AAA domain-containing protein 2; anc 5e-15
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 5e-11
2dl6_A83 Chromodomain-helicase-DNA-binding protein 8; BRK, 1e-10
2ckc_A80 Chromodomain-helicase-DNA-binding protein 7; prote 2e-10
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 4e-10
2cka_A95 Chromodomain-helicase-DNA-binding protein 8; BRK d 8e-10
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 2e-09
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 2e-09
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 4e-04
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 1e-08
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-08
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-07
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-06
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-06
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-05
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 6e-08
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 9e-08
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 1e-07
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 2e-05
2v0f_A87 Chromodomain-helicase-DNA-binding protein 7; nucle 5e-07
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 8e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-04
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 1e-05
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 4e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 8e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 4e-04
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
 Score =  839 bits (2169), Expect = 0.0
 Identities = 265/817 (32%), Positives = 419/817 (51%), Gaps = 69/817 (8%)

Query: 335  MRLNKAVMNYHANAEKEQKKEQERIEKERMRRLMAED---EEGYRKLIDQKKDKRLAFL- 390
                + V    AN + E     + +   R++  + E    E+    L + K++    FL 
Sbjct: 19   ALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYE--FLI 76

Query: 391  -------LSQTDEYISNLTQMVKEHKMEQK-KKQDEESKKRKQSVKQKLMDTDGKVTLDQ 442
                   L  T E   ++ Q+    +++   K+   E ++ +        D +      +
Sbjct: 77   KWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERE 136

Query: 443  DETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVADSDEENEDEDSEK 502
                +  + H+  R I S +    +      +L +W +         ++  EN  +  + 
Sbjct: 137  RRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKW-RRLN----YDEATWENATDIVKL 191

Query: 503  SKEKTSGENENKEKNKGEDDEYNKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQI 562
            + E+             ++ E +K   + ++ Y+      E ++ Q   +  G+L+++Q+
Sbjct: 192  APEQVK---------HFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQL 242

Query: 563  KGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWS 622
             G+ WM  L++   NGILADEMGLGKT+QT+A I++L+  ++ NGP +I+VPLST+  W 
Sbjct: 243  TGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWL 302

Query: 623  LEFERWAPSVNVVAYKGSPHLRKTLQ----------AQMKASKFNVLLTTYEYVIKDKGP 672
              FE+WAP +N + Y G+   R T++             K  KFNVLLTTYEY++KD+  
Sbjct: 303  DTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE 362

Query: 673  LAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLL 732
            L  + W++M +DE HR+KN    L   LN+F V  +R+L+TGTPLQN + EL AL+NFL+
Sbjct: 363  LGSIKWQFMAVDEAHRLKNAESSLYESLNSFKV-ANRMLITGTPLQNNIKELAALVNFLM 421

Query: 733  PSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP 792
            P  F      +                 +EE    I  LH+ ++PF+LRRLKK+VE  LP
Sbjct: 422  PGRFTIDQEIDFENQ-------------DEEQEEYIHDLHRRIQPFILRRLKKDVEKSLP 468

Query: 793  DKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHP 852
             K E I++ ++S +Q   Y+++ TK     + S      KGG  +L+N + +L+K  NHP
Sbjct: 469  SKTERILRVELSDVQTEYYKNILTK-----NYSALTAGAKGGHFSLLNIMNELKKASNHP 523

Query: 853  FMFQNIEEKFSDHVGGSGIVS---GPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQ 909
            ++F N EE+     G   +        L   SGK  LLD++L +LK  GHRVL+F QM +
Sbjct: 524  YLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVR 583

Query: 910  LMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQT 969
            +++IL DY S +G  + RLDGT  +  R   +  FN+PDS  F+F+LSTRAGGLG+NL T
Sbjct: 584  MLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643

Query: 970  ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEK 1029
            ADTV+IFDSDWNP  DLQA  RAHRIGQKN V V RL++ ++VEE +L  AR K+ ++  
Sbjct: 644  ADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYA 703

Query: 1030 VIQAGMFDQKSTGSERH---QFLQTILH---QDDEEDEEENAVPDDETVNQMLARSEEEF 1083
            +I  G+ D      +       L  IL     +     +     +D  ++ +L  +E+  
Sbjct: 704  IISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDHV 763

Query: 1084 QTYQRIDAERRKEQGKKS-RLIEVSELPDW--LIKED 1117
             T    ++    E+  K   + +     DW  +I E+
Sbjct: 764  TTPDLGESHLGGEEFLKQFEVTDYKADIDWDDIIPEE 800
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.76.2.1 Length = 83 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1 Length = 87 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1331
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 100.0
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
3h1t_A590 Type I site-specific restriction-modification syst 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.97
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 99.97
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.97
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.97
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.97
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.97
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.97
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.97
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.96
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.96
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.96
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.96
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.96
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 99.96
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.95
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.94
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.94
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.94
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.94
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.94
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.93
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.93
2dat_A123 Possible global transcription activator SNF2L2; br 99.92
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.92
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.92
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.92
2grc_A129 Probable global transcription activator SNF2L4; br 99.92
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 99.92
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.92
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 99.91
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.9
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.9
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.9
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 99.9
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.9
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.89
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.89
3d7c_A112 General control of amino acid synthesis protein 5; 99.89
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.89
3nxb_A116 CAT eye syndrome critical region protein 2; struct 99.88
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 99.88
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 99.88
2d9e_A121 Peregrin; four-helix bundle, transcription activat 99.88
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 99.88
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 99.88
4alg_A154 Bromodomain-containing protein 2; signaling protei 99.88
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 99.87
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 99.87
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.87
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 99.87
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 99.87
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 99.87
3p1f_A119 CREB-binding protein; structural genomics consorti 99.86
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 99.86
3rcw_A135 Bromodomain-containing protein 1; transcription, s 99.86
3fkm_X166 Signaling protein; bromodomain, malaria, structura 99.85
3uv4_A158 Second bromodomain of human transcription initiat 99.84
3dai_A130 ATPase family AAA domain-containing protein 2; anc 99.82
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 99.82
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.82
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 99.81
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 99.8
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.8
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.8
3uv5_A 265 Transcription initiation factor TFIID subunit 1; t 99.78
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.78
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.78
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.78
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 99.77
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.77
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.77
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.77
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.77
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.76
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.76
3aad_A 292 Transcription initiation factor TFIID subunit 1; p 99.76
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.76
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.76
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.75
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.75
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.75
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.74
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.73
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.73
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.72
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.72
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.72
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.71
2r0y_A 311 Chromatin structure-remodeling complex protein RSC 99.71
2r10_A 361 Chromatin structure-remodeling complex protein RSC 99.71
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.71
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.7
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.69
3jux_A822 Protein translocase subunit SECA; protein transloc 99.68
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.68
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.67
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.64
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.45
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.64
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.63
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.61
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.61
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.61
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.61
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.6
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.59
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.59
3bor_A237 Human initiation factor 4A-II; translation initiat 99.57
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.56
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.54
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.52
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.51
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.47
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.44
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.33
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.33
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.31
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 99.19
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.02
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 98.85
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 98.76
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.43
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.33
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.32
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.13
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.07
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.05
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 96.5
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 96.32
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.14
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 95.94
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 95.47
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 95.14
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 94.98
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 94.97
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 94.74
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 94.46
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 94.38
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 93.98
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 93.48
2chg_A226 Replication factor C small subunit; DNA-binding pr 93.4
3bos_A242 Putative DNA replication factor; P-loop containing 93.33
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 93.18
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 93.14
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 93.03
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 92.55
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 92.43
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 91.98
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 91.79
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 91.71
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 91.69
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 91.57
3co5_A143 Putative two-component system transcriptional RES 91.36
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 91.16
2gno_A305 DNA polymerase III, gamma subunit-related protein; 91.14
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 90.94
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 90.84
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 90.77
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 90.5
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 90.24
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 90.24
2v0f_A87 Chromodomain-helicase-DNA-binding protein 7; nucle 90.09
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 90.06
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 89.89
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 89.75
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 89.64
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 89.61
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 89.05
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 88.9
2v1u_A387 Cell division control protein 6 homolog; DNA repli 88.83
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 88.66
2qgz_A308 Helicase loader, putative primosome component; str 88.63
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 88.3
2kjq_A149 DNAA-related protein; solution structure, NESG, st 88.05
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 87.94
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 87.77
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 87.31
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 87.18
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 87.13
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 86.99
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 86.89
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 86.75
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 86.51
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 86.3
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 86.28
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 86.08
2r6a_A454 DNAB helicase, replicative helicase; replication, 85.69
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 85.62
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 85.61
1ojl_A304 Transcriptional regulatory protein ZRAR; response 85.51
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 85.26
3hjh_A483 Transcription-repair-coupling factor; MFD, mutatio 84.3
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 84.15
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 83.94
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 83.74
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 83.71
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 83.65
2chq_A319 Replication factor C small subunit; DNA-binding pr 83.12
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 83.08
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 81.76
2cvh_A220 DNA repair and recombination protein RADB; filamen 81.39
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 80.6
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 80.55
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 80.19
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=6.5e-77  Score=773.99  Aligned_cols=497  Identities=45%  Similarity=0.776  Sum_probs=411.8

Q ss_pred             hhhhhhcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544         542 HEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW  621 (1331)
Q Consensus       542 ~e~~~~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW  621 (1331)
                      .+.+..+|+...+++|||||++||+||+..+.++.+|||||+||+|||+++|+++.+++......+|+|||||.+++.||
T Consensus       222 ~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW  301 (800)
T 3mwy_W          222 FEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAW  301 (800)
T ss_dssp             CCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHH
T ss_pred             ccccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHH
Confidence            34566788888899999999999999999999999999999999999999999999998888888999999999999999


Q ss_pred             HHHHHHHcCCCcEEEecCChhHHHHHHHHh----------hccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCC
Q psy1544         622 SLEFERWAPSVNVVAYKGSPHLRKTLQAQM----------KASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKN  691 (1331)
Q Consensus       622 ~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~----------~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn  691 (1331)
                      ..||.+|+|++.+++|+|....+..+....          ....++|+||||+++.++...+..+.|++|||||||++||
T Consensus       302 ~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn  381 (800)
T 3mwy_W          302 LDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKN  381 (800)
T ss_dssp             HHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCC
T ss_pred             HHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcC
Confidence            999999999999999999988776655432          3457899999999999998889999999999999999999


Q ss_pred             cchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHH
Q psy1544         692 HHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRL  771 (1331)
Q Consensus       692 ~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL  771 (1331)
                      ..++.++++..+ .+.+||+|||||++|++.|||++++||.|+.|.....|....             ........+..|
T Consensus       382 ~~s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~-------------~~~~~~~~~~~L  447 (800)
T 3mwy_W          382 AESSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN-------------QDEEQEEYIHDL  447 (800)
T ss_dssp             SSSHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C-------------CTTHHHHHHHHH
T ss_pred             chhHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc-------------cchhHHHHHHHH
Confidence            999999999876 889999999999999999999999999999998766553111             112233457889


Q ss_pred             HHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCC
Q psy1544         772 HKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNH  851 (1331)
Q Consensus       772 ~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h  851 (1331)
                      +.+++||++||++.++...||++.+.++.|.|++.|+.+|+.+...........     ..+....+++.+++||++|+|
T Consensus       448 ~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~-----~~~~~~~~l~~l~~Lrk~~~h  522 (800)
T 3mwy_W          448 HRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAG-----AKGGHFSLLNIMNELKKASNH  522 (800)
T ss_dssp             HHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------------CTHHHHHHHHHHHHHC
T ss_pred             HHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc-----cccchhhHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999887654433221     122344688999999999999


Q ss_pred             ccchhhhHhhhhhccCCCCccc---CCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEE
Q psy1544         852 PFMFQNIEEKFSDHVGGSGIVS---GPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRL  928 (1331)
Q Consensus       852 p~l~~~~~~~~~~~~~~~~~~~---~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~i  928 (1331)
                      |+++...........+......   ...++..|+|+.+|.++|..+...|+||||||+++.++++|+.+|...|+.+.++
T Consensus       523 p~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i  602 (800)
T 3mwy_W          523 PYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRL  602 (800)
T ss_dssp             GGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEE
T ss_pred             hhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEE
Confidence            9999776655433322111100   1124567999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEee
Q psy1544         929 DGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMT 1008 (1331)
Q Consensus       929 dG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~ 1008 (1331)
                      +|+++..+|..+++.|++++++.+|||+||++||+||||++|++||+||++|||..+.||+||+||+||+++|+||+|++
T Consensus       603 ~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~  682 (800)
T 3mwy_W          603 DGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVS  682 (800)
T ss_dssp             STTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEE
T ss_pred             eCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEec
Confidence            99999999999999999888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCcccCcCC---hhHHHHHHHHHhccCC
Q psy1544        1009 VNSVEERILAAARYKLNMDEKVIQAGMFDQKST---GSERHQFLQTILHQDD 1057 (1331)
Q Consensus      1009 ~~TiEE~I~~~~~~K~~l~~~vi~~g~~~~~~~---~~e~~~~l~~il~~~~ 1057 (1331)
                      .+|+|++|++++..|+.+...||+.|..+....   .......|..||....
T Consensus       683 ~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~  734 (800)
T 3mwy_W          683 KDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGA  734 (800)
T ss_dssp             TTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcch
Confidence            999999999999999999999999887664321   1112334667776544
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1 Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1331
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 4e-44
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 7e-44
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 6e-40
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 2e-26
d1eqfa1139 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain 2e-20
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 1e-19
d3d7ca1102 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T 2e-18
d1wuma1118 a.29.2.1 (A:715-832) P300/CAF histone acetyltransf 3e-18
d1eqfa2128 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain 1e-17
d1e6ia_111 a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c 6e-17
d3dwya1114 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { 6e-17
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 1e-12
d2v0fa187 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-b 8e-11
d2ckaa158 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-b 9e-11
d2ckca160 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-b 2e-10
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 9e-10
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 1e-04
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 3e-04
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 0.001
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score =  162 bits (409), Expect = 4e-44
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 13/305 (4%)

Query: 790  QLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLC 849
             LP K+E ++ C+++ LQK LY+    +   +     +  Q    + + +++I  L+KLC
Sbjct: 8    YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV-----ESLQTGKISVSSLSSITSLKKLC 62

Query: 850  NHPFMFQNIEEKFSDHVGGS------GIVSGPDLYRVSGKFELLDRILPKLKS-TGHRVL 902
            NHP +         +   G+         +     ++SGK  +LD IL   ++ T  +V+
Sbjct: 63   NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVV 122

Query: 903  LFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGG 962
            L    TQ +++ E     R + Y+RLDGT   + R  ++++FN P S  FIF+LS++AGG
Sbjct: 123  LVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGG 182

Query: 963  LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARY 1022
             GLNL  A+ +++FD DWNP  D QA  R  R GQK    + RL++  ++EE+IL    +
Sbjct: 183  CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAH 242

Query: 1023 KLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEEDEEENAVPDDETVNQMLARSEEE 1082
            K  +   V+      ++       + L + L++    D  +          + +    ++
Sbjct: 243  KKALSSCVVDEEQDVERHFSLGELRELFS-LNEKTLSDTHDRFRCRRCVNGRQVRPPPDD 301

Query: 1083 FQTYQ 1087
                 
Sbjct: 302  SDCTC 306
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1331
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d3d7ca1102 GCN5 {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1wuma1118 P300/CAF histone acetyltransferase bromodomain {Hu 99.87
d1e6ia_111 GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.87
d1eqfa1139 TAFII250 double bromodomain module {Human (Homo sa 99.86
d1eqfa2128 TAFII250 double bromodomain module {Human (Homo sa 99.85
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.85
d3dwya1114 CREB-binding protein, CBP {Human (Homo sapiens) [T 99.85
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.78
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.78
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.78
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.77
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.77
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.76
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.75
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.74
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.72
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.69
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.69
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.65
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.61
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.59
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.51
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.51
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.44
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.43
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.42
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.39
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.33
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.32
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.31
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.31
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.3
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.3
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.23
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.21
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.21
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.19
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.11
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.09
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.09
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.01
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.96
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.81
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.27
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.18
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 97.04
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.02
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.15
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 96.11
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 95.93
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 95.83
d2ckaa158 Chromodomain-helicase-dna-binding protein 8, CHD8 95.72
d2v0fa187 Chromodomain-helicase-DNA-binding protein 7, CHD7 95.54
d2ckca160 Chromodomain-helicase-DNA-binding protein 7, CHD7 95.38
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 94.69
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 93.9
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 93.87
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 93.79
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 93.62
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 92.7
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 92.58
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 91.57
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 91.3
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 90.65
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 90.1
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 89.52
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 89.42
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 89.22
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 88.91
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 88.76
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 88.54
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 87.46
d1okkd2207 GTPase domain of the signal recognition particle r 86.72
d1ls1a2207 GTPase domain of the signal sequence recognition p 85.55
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 85.33
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 85.24
d2qy9a2211 GTPase domain of the signal recognition particle r 85.01
d1vmaa2213 GTPase domain of the signal recognition particle r 84.02
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 82.82
d1j8yf2211 GTPase domain of the signal sequence recognition p 82.52
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 81.99
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 80.94
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 80.38
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=5.3e-40  Score=380.38  Aligned_cols=261  Identities=31%  Similarity=0.498  Sum_probs=213.3

Q ss_pred             HHh-hhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhh
Q psy1544         786 EVE-SQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSD  864 (1331)
Q Consensus       786 ~v~-~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~  864 (1331)
                      +|. +.||+|.+++|+|+||+.|+.+|+.+..........     ........+++.+++||++||||+++.........
T Consensus         3 ~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~-----~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~   77 (346)
T d1z3ix1           3 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-----QTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEE   77 (346)
T ss_dssp             GGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-----CTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCT
T ss_pred             hhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhh-----hcCCchHHHHHHHHHHHHHhCCHHHhhhhhccccc
Confidence            344 589999999999999999999999988764432211     11122346788999999999999987533221111


Q ss_pred             cc------CCCCcccCCccccccchhHHHHHhhhhhh-cCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Q psy1544         865 HV------GGSGIVSGPDLYRVSGKFELLDRILPKLK-STGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDR  937 (1331)
Q Consensus       865 ~~------~~~~~~~~~~l~~~s~K~~~L~~lL~~l~-~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR  937 (1331)
                      ..      ..............|+|+.+|..+|..+. ..|+||||||+|+.++++|+.+|...|+.|++++|+++..+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R  157 (346)
T d1z3ix1          78 GFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKR  157 (346)
T ss_dssp             TCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHH
T ss_pred             cccchhhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHH
Confidence            11      11112222334567999999999998875 678999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHH
Q psy1544         938 GDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERIL 1017 (1331)
Q Consensus       938 ~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~ 1017 (1331)
                      ..+++.||++++..+|||+|+.+||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++.|||||+|+
T Consensus       158 ~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~  237 (346)
T d1z3ix1         158 AKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIL  237 (346)
T ss_dssp             HHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHH
T ss_pred             HHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHH
Confidence            99999999877777899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcccCc-CChhHHHHHHHHHhcc
Q psy1544        1018 AAARYKLNMDEKVIQAGMFDQK-STGSERHQFLQTILHQ 1055 (1331)
Q Consensus      1018 ~~~~~K~~l~~~vi~~g~~~~~-~~~~e~~~~l~~il~~ 1055 (1331)
                      +++..|..+++.|++++..... .+.++    |..++..
T Consensus       238 ~~~~~K~~l~~~v~~~~~~~~~~~~~~~----l~~lf~~  272 (346)
T d1z3ix1         238 QRQAHKKALSSCVVDEEQDVERHFSLGE----LRELFSL  272 (346)
T ss_dssp             HHHHHHHHTSCCCCSCSSSCCCSSCHHH----HHHHTCC
T ss_pred             HHHHHHHHHHHHHhCCchhhhhcCCHHH----HHHHhcC
Confidence            9999999999999987654332 33333    5556554
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure