Psyllid ID: psy15458

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccc
mvhsctnlMMQQVQKELNASLTYLAMGVhfsrdcvnrpgfakfsSRVLVRSGGEHAIKFSSSYLtmrgnltdyhhhqgvnkmtWNSAAHAVQDALNLETQVTESIRKIIIECeqgtnnvhdlesvndyhlsdwltgefldeQYKGQRKLAGMLSTmrktegthgklTEFLMDKEFL
mvhsctnlMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGmlstmrktegthgklteflmdkefl
MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL
************VQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQ******************************
**HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL
MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL
*VHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMD****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query176 2.2.26 [Sep-21-2011]
P41822209 Ferritin subunit OS=Aedes N/A N/A 0.897 0.755 0.389 2e-25
O46119173 Ferritin heavy chain OS=E N/A N/A 0.903 0.919 0.333 7e-15
P25319173 Ferritin-1 heavy chain OS N/A N/A 0.880 0.895 0.321 3e-14
P85838174 Ferritin, heavy subunit O N/A N/A 0.886 0.896 0.290 5e-13
Q26061181 Ferritin OS=Pacifastacus N/A N/A 0.892 0.867 0.302 8e-13
P85837174 Ferritin, heavy subunit O N/A N/A 0.914 0.925 0.294 2e-12
P49947176 Ferritin, middle subunit N/A N/A 0.914 0.914 0.297 4e-12
Q2YDI9242 Ferritin, mitochondrial O yes N/A 0.869 0.632 0.323 8e-11
P85835176 Ferritin, middle subunit N/A N/A 0.886 0.886 0.276 1e-10
P85836176 Ferritin, liver middle su N/A N/A 0.886 0.886 0.276 2e-10
>sp|P41822|FRI_AEDAE Ferritin subunit OS=Aedes aegypti GN=FERH PE=1 SV=2 Back     alignment and function desciption
 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 97/172 (56%), Gaps = 14/172 (8%)

Query: 5   CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYL 64
           C   + +Q+ KE +AS+ YL    +F+++ +N PGF KF          EH IK    Y 
Sbjct: 46  CLAALHRQINKEFDASIIYLKYAAYFAQEKINLPGFEKFFFHSAAEER-EHGIKLIE-YA 103

Query: 65  TMRGNLT-DYHHHQGVNK--MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHD 121
            MRG    D H     +    T  +   A++ AL  E +VT+SIR +I  CE G+N    
Sbjct: 104 LMRGKAPVDKHFKLNYDHEVPTVTTGESALETALQKEVEVTKSIRGVIKACEDGSN---- 159

Query: 122 LESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDK 173
                D+HL+D+LTGE+LDEQ+KGQR+LA  ++T++K + +  KL EFL DK
Sbjct: 160 -----DFHLADYLTGEYLDEQHKGQRELAEKIATLKKMKKSAPKLGEFLFDK 206
Protection against toxic levels of iron. Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.
Aedes aegypti (taxid: 7159)
EC: 1EC: .EC: 1EC: 6EC: .EC: 3EC: .EC: 1
>sp|O46119|FRIH_ECHGR Ferritin heavy chain OS=Echinococcus granulosus PE=2 SV=1 Back     alignment and function description
>sp|P25319|FRIH1_SCHMA Ferritin-1 heavy chain OS=Schistosoma mansoni GN=SCM-1 PE=2 SV=1 Back     alignment and function description
>sp|P85838|FRIH_TREBE Ferritin, heavy subunit OS=Trematomus bernacchii PE=1 SV=1 Back     alignment and function description
>sp|Q26061|FRI_PACLE Ferritin OS=Pacifastacus leniusculus PE=1 SV=1 Back     alignment and function description
>sp|P85837|FRIH_TRENE Ferritin, heavy subunit OS=Trematomus newnesi PE=1 SV=1 Back     alignment and function description
>sp|P49947|FRIM_SALSA Ferritin, middle subunit OS=Salmo salar PE=2 SV=1 Back     alignment and function description
>sp|Q2YDI9|FTMT_BOVIN Ferritin, mitochondrial OS=Bos taurus GN=FTMT PE=2 SV=1 Back     alignment and function description
>sp|P85835|FRIM_TRENE Ferritin, middle subunit OS=Trematomus newnesi PE=1 SV=1 Back     alignment and function description
>sp|P85836|FRIML_TREBE Ferritin, liver middle subunit OS=Trematomus bernacchii PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query176
289629282215 ferritin precursor [Nasonia vitripennis] 0.914 0.748 0.486 2e-39
269912665220 ferritin heavy chain [Asobara tabida] 0.943 0.754 0.486 9e-39
307197505190 Ferritin subunit [Harpegnathos saltator] 0.931 0.863 0.489 1e-38
350401074217 PREDICTED: ferritin subunit-like [Bombus 0.960 0.778 0.505 3e-38
157704373217 ferritin [Bombus ignitus] 0.960 0.778 0.505 4e-38
383865759215 PREDICTED: ferritin subunit-like [Megach 0.960 0.786 0.502 1e-37
91077442215 PREDICTED: similar to ferritin [Triboliu 0.937 0.767 0.497 1e-37
90819988210 putative ferritin [Graphocephala atropun 0.920 0.771 0.494 2e-37
332027165227 Ferritin subunit [Acromyrmex echinatior] 0.960 0.744 0.478 2e-37
157674423211 putative ferritin heavy-chain subunit [L 0.926 0.772 0.491 8e-37
>gi|289629282|ref|NP_001166224.1| ferritin precursor [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 114/189 (60%), Gaps = 28/189 (14%)

Query: 1   MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE---HAI 57
           MV  C  ++  QV+ E+ A++TYLAMG HF+RD VNRPGF    S++ + S GE   HAI
Sbjct: 38  MVSPCIKILEAQVKTEIEAAMTYLAMGAHFARDSVNRPGF----SKLFIESAGEEREHAI 93

Query: 58  KFSSSYLTMRGNLTDYHHHQGVNKMT----------WNSAAHAVQDALNLETQVTESIRK 107
           K    YL MRG L        V+K+           WNS   A+ DALNLE+QVT SIR 
Sbjct: 94  KIIE-YLLMRGELV-----SDVSKLLKFPLKPIREEWNSGVEALTDALNLESQVTRSIRD 147

Query: 108 IIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLT 167
           II+ CE   +        NDYHL D+LT +FLDEQYKGQR LAG +ST+ K   +HG L 
Sbjct: 148 IIMTCESPKDI-----PFNDYHLVDYLTADFLDEQYKGQRDLAGKISTLGKMMASHGALG 202

Query: 168 EFLMDKEFL 176
           EFL DK+ L
Sbjct: 203 EFLFDKKLL 211

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|269912665|emb|CAZ04924.1| ferritin heavy chain [Asobara tabida] Back     alignment and taxonomy information
>gi|307197505|gb|EFN78735.1| Ferritin subunit [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350401074|ref|XP_003486043.1| PREDICTED: ferritin subunit-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|157704373|gb|ABV68875.1| ferritin [Bombus ignitus] Back     alignment and taxonomy information
>gi|383865759|ref|XP_003708340.1| PREDICTED: ferritin subunit-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|91077442|ref|XP_967058.1| PREDICTED: similar to ferritin [Tribolium castaneum] gi|270001622|gb|EEZ98069.1| hypothetical protein TcasGA2_TC000476 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|90819988|gb|ABD98751.1| putative ferritin [Graphocephala atropunctata] Back     alignment and taxonomy information
>gi|332027165|gb|EGI67258.1| Ferritin subunit [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|157674423|gb|ABV60307.1| putative ferritin heavy-chain subunit [Lutzomyia longipalpis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query176
FB|FBgn0015222205 Fer1HCH "Ferritin 1 heavy chai 0.926 0.795 0.468 1.8e-32
ZFIN|ZDB-GENE-040718-72226 zgc:92066 "zgc:92066" [Danio r 0.903 0.703 0.294 2.1e-13
ZFIN|ZDB-GENE-040912-30177 fth1b "ferritin, heavy polypep 0.909 0.903 0.308 2.7e-13
ZFIN|ZDB-GENE-071004-86175 zgc:173594 "zgc:173594" [Danio 0.869 0.874 0.299 2.7e-13
ZFIN|ZDB-GENE-080722-16175 zgc:194125 "zgc:194125" [Danio 0.903 0.908 0.294 5.6e-13
ZFIN|ZDB-GENE-050522-428175 zgc:109934 "zgc:109934" [Danio 0.869 0.874 0.293 9.1e-13
UNIPROTKB|Q2YDI9242 FTMT "Ferritin, mitochondrial" 0.869 0.632 0.323 1.5e-12
UNIPROTKB|F1MMZ2242 FTMT "Ferritin" [Bos taurus (t 0.869 0.632 0.323 2.4e-12
ZFIN|ZDB-GENE-030131-7540175 zgc:198419 "zgc:198419" [Danio 0.903 0.908 0.289 3.1e-12
ZFIN|ZDB-GENE-000831-2177 fth1a "ferritin, heavy polypep 0.892 0.887 0.292 3.9e-12
FB|FBgn0015222 Fer1HCH "Ferritin 1 heavy chain homologue" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 83/177 (46%), Positives = 108/177 (61%)

Query:     1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60
             M  +C   M  Q+Q+E+NAS  YLAMG +FSRD VNRPGFA+   +   +   EH  K  
Sbjct:    37 MKDACIKGMRNQIQEEINASYQYLAMGAYFSRDTVNRPGFAEHFFKA-AKEEREHGSKLV 95

Query:    61 SSYLTMRGNLT----DYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGT 116
               YL+MRG LT    D  +   V K  W   A A+ DAL+LE +VT+SIRK+I  CE   
Sbjct:    96 E-YLSMRGQLTEGVSDLINVPTVAKQEWTDGAAALSDALDLEIKVTKSIRKLIQTCEN-- 152

Query:   117 NNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDK 173
                   +  N YHL D+LTG +L+EQ  GQR+LAG L+T++K   T+G+L EFL DK
Sbjct:   153 ------KPYNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFLFDK 203
GO:0008043 "intracellular ferritin complex" evidence=ISS;NAS;IDA
GO:0006879 "cellular iron ion homeostasis" evidence=ISS;NAS;IDA
GO:0008198 "ferrous iron binding" evidence=ISS;NAS;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0008199 "ferric iron binding" evidence=IEA
GO:0006826 "iron ion transport" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005576 "extracellular region" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0045169 "fusome" evidence=IDA
GO:0009791 "post-embryonic development" evidence=IMP
GO:0008283 "cell proliferation" evidence=IDA
ZFIN|ZDB-GENE-040718-72 zgc:92066 "zgc:92066" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-30 fth1b "ferritin, heavy polypeptide 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-071004-86 zgc:173594 "zgc:173594" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080722-16 zgc:194125 "zgc:194125" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-428 zgc:109934 "zgc:109934" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2YDI9 FTMT "Ferritin, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMZ2 FTMT "Ferritin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7540 zgc:198419 "zgc:198419" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-000831-2 fth1a "ferritin, heavy polypeptide 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P29389FRIH_CRIGR1, ., 1, 6, ., 3, ., 10.30170.85790.8118yesN/A
Q8MIP0FRIH_HORSE1, ., 1, 6, ., 3, ., 10.30170.85790.8296yesN/A
P08267FRIH_CHICK1, ., 1, 6, ., 3, ., 10.29540.89770.8777yesN/A
P09528FRIH_MOUSE1, ., 1, 6, ., 3, ., 10.30170.85790.8296yesN/A
P02794FRIH_HUMAN1, ., 1, 6, ., 3, ., 10.30760.85790.8251yesN/A
P19132FRIH_RAT1, ., 1, 6, ., 3, ., 10.30170.85790.8296yesN/A
P09451FRIL_RABITNo assigned EC number0.28120.80680.8114yesN/A
Q5R8J7FRIH_PONAB1, ., 1, 6, ., 3, ., 10.31360.85790.8251yesN/A
Q2YDI9FTMT_BOVIN1, ., 1, 6, ., 3, ., 10.32330.86930.6322yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
cd01056161 cd01056, Euk_Ferritin, eukaryotic ferritins 2e-47
cd00904160 cd00904, Ferritin, Ferritin iron storage proteins 4e-17
pfam00210142 pfam00210, Ferritin, Ferritin-like domain 7e-17
cd01055156 cd01055, Nonheme_Ferritin, nonheme-containing ferr 2e-10
COG1528167 COG1528, Ftn, Ferritin-like protein [Inorganic ion 7e-06
>gnl|CDD|153114 cd01056, Euk_Ferritin, eukaryotic ferritins Back     alignment and domain information 
 Score =  151 bits (384), Expect = 2e-47
 Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 24/178 (13%)

Query: 3   HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKF------SSRVLVRSGGEHA 56
             C   + +Q+  ELNAS  YL+M  +F RD V  PGFAKF        R       EHA
Sbjct: 2   EECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEER-------EHA 54

Query: 57  IKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGT 116
            K    Y   RG        +   K  W S   A++ AL+LE  V +S+  +        
Sbjct: 55  EKL-IKYQNKRGGRVVLQDIKKPEKDEWGSGLEALELALDLEKLVNQSLLDLHKLA---- 109

Query: 117 NNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKE 174
                    ND HL+D+L  EFL+EQ +  +KLAG ++ +++       L E+L DK 
Sbjct: 110 ------SEHNDPHLADFLESEFLEEQVESIKKLAGYITNLKRVGKPQSGLGEYLFDKY 161

Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged residues on the protein shell inner surface of the L subunits promote ferrihydrite nucleation. Most plant ferritins combine both oxidase and nucleation functions in one chain: they have four interior glutamate residues as well as seven ferroxidase center residues. Length = 161
>gnl|CDD|153098 cd00904, Ferritin, Ferritin iron storage proteins Back     alignment and domain information
>gnl|CDD|215791 pfam00210, Ferritin, Ferritin-like domain Back     alignment and domain information
>gnl|CDD|153113 cd01055, Nonheme_Ferritin, nonheme-containing ferritins Back     alignment and domain information
>gnl|CDD|224445 COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 176
PRK15022167 ferritin-like protein; Provisional 100.0
cd00904160 Ferritin Ferritin iron storage proteins. Ferritins 100.0
KOG2332|consensus178 100.0
PRK10304165 ferritin; Provisional 100.0
cd01056161 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferr 100.0
COG1528167 Ftn Ferritin-like protein [Inorganic ion transport 100.0
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 100.0
PRK10635158 bacterioferritin; Provisional 99.95
TIGR00754157 bfr bacterioferritin. Bacterioferritin is a homomu 99.94
PF00210142 Ferritin: Ferritin-like domain; InterPro: IPR00833 99.94
cd00907153 Bacterioferritin Bacterioferritin, ferritin-like d 99.92
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 99.88
COG2193157 Bfr Bacterioferritin (cytochrome b1) [Inorganic io 99.88
cd01052148 DPSL DPS-like protein, ferritin-like diiron-bindin 99.85
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 99.79
PRK13456186 DNA protection protein DPS; Provisional 99.58
cd01043139 DPS DPS protein, ferritin-like diiron-binding doma 99.26
cd07908154 Mn_catalase_like Manganese catalase-like protein, 99.11
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 99.08
cd01051156 Mn_catalase Manganese catalase, ferritin-like diir 98.74
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 98.71
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 98.62
PRK09448162 DNA starvation/stationary phase protection protein 98.49
COG2406172 Protein distantly related to bacterial ferritins [ 98.03
COG0783156 Dps DNA-binding ferritin-like protein (oxidative d 97.92
COG1633176 Uncharacterized conserved protein [Function unknow 97.78
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 97.7
PRK127751006 putative trifunctional 2-polyprenylphenol hydroxyl 97.6
COG1592166 Rubrerythrin [Energy production and conversion] 97.55
TIGR02284139 conserved hypothetical protein. Members of this pr 96.96
PF09537111 DUF2383: Domain of unknown function (DUF2383); Int 96.8
cd01042165 DMQH Demethoxyubiquinone hydroxylase, ferritin-lik 96.57
PF13668137 Ferritin_2: Ferritin-like domain 96.45
cd01048135 Ferritin_like_AB2 Uncharacterized family of ferrit 95.45
PF03232172 COQ7: Ubiquinone biosynthesis protein COQ7; InterP 94.3
PF12902227 Ferritin-like: Ferritin-like; PDB: 3HL1_A. 91.97
cd01046123 Rubrerythrin_like rubrerythrin-like, diiron-bindin 90.18
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 88.8
PF05974159 DUF892: Domain of unknown function (DUF892); Inter 87.79
cd07908154 Mn_catalase_like Manganese catalase-like protein, 84.36
cd01055156 Nonheme_Ferritin nonheme-containing ferritins. Non 84.02
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 82.22
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 81.6
>PRK15022 ferritin-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-46  Score=289.15  Aligned_cols=158  Identities=18%  Similarity=0.154  Sum_probs=150.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC
Q psy15458          1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVN   80 (176)
Q Consensus         1 ~~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~   80 (176)
                      .+++++++||+|||.|++|||+|++||+||+  +.+|||||+||+.+| .|||+||++|+ +|+++|||+|.+++|++|+
T Consensus         2 ~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa-~EEreHA~k~~-~yl~~rGg~v~l~~I~~P~   77 (167)
T PRK15022          2 ATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQA-QSNVTQMMRMF-NFMKSAGATPIVKAIDVPG   77 (167)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCceeeCCCCCCc
Confidence            3689999999999999999999999999998  689999999999999 99999999999 9999999999999999884


Q ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q psy15458         81 KMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTE  160 (176)
Q Consensus        81 ~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~  160 (176)
                       .+|+|+.++|+.+|++|+.||++|++|+++|.++          +|+++++||. +|+.||+++++.+.++++.+++++
T Consensus        78 -~~~~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~----------~D~~t~~FL~-wfv~EQ~eEe~~~~~ild~l~~~~  145 (167)
T PRK15022         78 -EKLNSLEELFQKTLEEYEQRSSTLAQLADEAKAL----------NDDSTLNFLR-DLEKEQQHDGLLLQTILDEVRSAK  145 (167)
T ss_pred             -cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence             7999999999999999999999999999999999          9999999998 899999999999999999999998


Q ss_pred             CCCCcceeeecccccC
Q psy15458        161 GTHGKLTEFLMDKEFL  176 (176)
Q Consensus       161 ~~~~~~g~~l~D~~ll  176 (176)
                      ++  |.|+|+||++++
T Consensus       146 ~~--g~g~~~~D~~~~  159 (167)
T PRK15022        146 LA--GLCPVQTDQHLL  159 (167)
T ss_pred             CC--CcchhHhhHHHH
Confidence            64  799999998764

>cd00904 Ferritin Ferritin iron storage proteins Back     alignment and domain information
>KOG2332|consensus Back     alignment and domain information
>PRK10304 ferritin; Provisional Back     alignment and domain information
>cd01056 Euk_Ferritin eukaryotic ferritins Back     alignment and domain information
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>PRK10635 bacterioferritin; Provisional Back     alignment and domain information
>TIGR00754 bfr bacterioferritin Back     alignment and domain information
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms [] Back     alignment and domain information
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>PRK13456 DNA protection protein DPS; Provisional Back     alignment and domain information
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional Back     alignment and domain information
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only] Back     alignment and domain information
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional Back     alignment and domain information
>COG1592 Rubrerythrin [Energy production and conversion] Back     alignment and domain information
>TIGR02284 conserved hypothetical protein Back     alignment and domain information
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain Back     alignment and domain information
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain Back     alignment and domain information
>PF13668 Ferritin_2: Ferritin-like domain Back     alignment and domain information
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ] Back     alignment and domain information
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A Back     alignment and domain information
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01055 Nonheme_Ferritin nonheme-containing ferritins Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
1z6o_M191 Crystal Structure Of Trichoplusia Ni Secreted Ferri 5e-37
2cei_A183 Recombinant Human H Ferritin, K86q Mutant, Soaked W 4e-10
3af9_X174 Crystal Structure Of Pd(Allyl)APO-C48afr Length = 1 4e-10
3np2_X174 Crystal Structure Of Pd(Allyl)APO-E45cC48A-Rhlfr Le 5e-10
2zg8_X174 Crystal Structure Of Pd(Allyl)APO-H49afr Length = 1 5e-10
4dyx_A172 Crystal Structure Of The Cu-adduct Of Human H-ferri 5e-10
2v2l_A174 Mutant (E53,56,57,60q) Recombinant Horse Spleen Apo 5e-10
2za6_A175 Recombinant Horse L-Chain Apoferritin Length = 175 6e-10
2za7_A171 Recombinant Horse L-Chain Apoferritin N-Terminal De 7e-10
2g4h_A174 Anomalous Substructure Of Apoferritin Length = 174 7e-10
4dyy_A172 Crystal Structure Of The Cu-adduct Of Human H-ferri 7e-10
2za8_A167 Recombinant Horse L-Chain Apoferritin N-Terminal De 7e-10
3af8_X174 Crystal Structure Of Pd(Ally)APO-C126afr Length = 1 8e-10
2chi_A183 Recombinant Human H Ferritin, K86q And E27d Mutant 9e-10
2clu_A183 Recombinant Human H Ferritin, K86q And E107d Mutant 9e-10
2gyd_A170 Complex Of Equine Apoferritin With The H-Diaziflura 1e-09
3ajo_A182 Crystal Structure Of Wild-Type Human Ferritin H Cha 1e-09
1ies_A174 Tetragonal Crystal Structure Of Native Horse Spleen 1e-09
2zur_X174 Crystal Structure Of Rh(Nbd)APO-Fr Length = 174 1e-09
3np0_X174 Crystal Structure Of Pd(Allyl)APO-E45cH49AR52H-Rhlf 1e-09
2v2p_A174 Mutant (E53,56,57,60q And R59m) Recombinant Horse S 2e-09
2cn7_A183 Recombinant Human H Ferritin, K86q, E27d And E107d 2e-09
3noz_X174 Crystal Structure Of Pd(Allyl)APO-E45cR52H-Rhlfr Le 2e-09
2v2n_A174 Mutant R59m Recombinant Horse Spleen Apoferritin Co 3e-09
3ajq_A182 Crystal Structure Of Human H Ferritin E140q Mutant 3e-09
3es3_A183 Directing Noble Metal Ion Chemistry Within A Design 3e-09
2zg9_X174 Crystal Structure Of Pd(Allyl)APO-H114afr Length = 4e-09
4dz0_A172 Crystal Structure Of The Cu-adduct Of Human H-ferri 5e-09
3ajp_A182 Crystal Structure Of Human H Ferritin E140a Mutant 6e-09
1bg7_A176 Localized Unfolding At The Junction Of Three Ferrit 7e-09
1rcd_A173 Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Lengt 8e-09
2ffx_J173 Structure Of Human Ferritin L. Chain Length = 173 8e-09
2fg4_A174 Structure Of Human Ferritin L Chain Length = 174 8e-09
1rci_A173 Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Lengt 1e-08
3kxu_A191 Crystal Structure Of Human Ferritin Ftl498instc Pat 2e-08
3hx2_A192 Crystal Structure Of Human Ferritin Phe167serfsx26 2e-08
1r03_A182 Crystal Structure Of A Human Mitochondrial Ferritin 2e-08
1rcc_A173 Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Lengt 2e-08
1h96_A182 Recombinant Mouse L-Chain Ferritin Length = 182 2e-08
2z6m_A176 Crystal Structure Of Human Ferritin H8 As Biotempla 3e-08
3erz_A183 Directing Noble Metal Ion Chemistry Within A Design 3e-08
1mfr_A176 Crystal Structure Of M Ferritin Length = 176 6e-08
3ka8_A176 Frog M-Ferritin, Eqh Mutant, With Cobalt Length = 1 1e-07
3ka6_A176 Frog M-Ferritin, Eed Mutant, With Cobalt Length = 1 1e-07
3ka9_A176 Frog M-Ferritin, Eeh Mutant, With Cobalt Length = 1 2e-07
3sh6_A176 Frog M-Ferritin, D122r Mutant, With Magnesium Lengt 3e-07
3shx_A176 Frog M-Ferritin With Magnesium, L134p Mutant Length 3e-07
3se1_A176 Frog M-Ferritin With Magnesium, R72d Mutant Length 4e-07
3a68_A212 Crystal Structure Of Plant Ferritin Reveals A Novel 1e-06
3a9q_A212 Crystal Structure Analysis Of E173a Variant Of The 9e-06
3vnx_A204 Crystal Structure Of Ferritin From Multicellular Gr 3e-04
>pdb|1Z6O|M Chain M, Crystal Structure Of Trichoplusia Ni Secreted Ferritin Length = 191 Back     alignment and structure 
Iteration: 1

 Score =  150 bits (378), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 110/182 (60%), Gaps = 17/182 (9%)
Query: 1   MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAK--FSSRVLVRSGGEHAIK 58
           M  SC N M QQ+Q E+ ASL YLAMG HFS+D VNRPGFA+  F +    R   EHA+K
Sbjct: 17  MHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEER---EHAMK 73
Query: 59  FSSSYLTMRGNLTD----YHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQ 114
               YL MRG LT+        +   + +W     A++ AL++E+ VT+SIR +I  CE 
Sbjct: 74  LIE-YLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACE- 131
Query: 115 GTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKE 174
                 D    NDYHL D+LTG+FL+EQYKGQR LAG  ST++K    H  L EF+ DK+
Sbjct: 132 ------DDSEFNDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKK 185
Query: 175 FL 176
            L
Sbjct: 186 LL 187
>pdb|2CEI|A Chain A, Recombinant Human H Ferritin, K86q Mutant, Soaked With Zn Length = 183 Back     alignment and structure
>pdb|3AF9|X Chain X, Crystal Structure Of Pd(Allyl)APO-C48afr Length = 174 Back     alignment and structure
>pdb|3NP2|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cC48A-Rhlfr Length = 174 Back     alignment and structure
>pdb|2ZG8|X Chain X, Crystal Structure Of Pd(Allyl)APO-H49afr Length = 174 Back     alignment and structure
>pdb|4DYX|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin Variant 4his- Delta C-star Length = 172 Back     alignment and structure
>pdb|2V2L|A Chain A, Mutant (E53,56,57,60q) Recombinant Horse Spleen Apoferritin Cocrystallized With Haemin In Acidic Conditions Length = 174 Back     alignment and structure
>pdb|2ZA6|A Chain A, Recombinant Horse L-Chain Apoferritin Length = 175 Back     alignment and structure
>pdb|2ZA7|A Chain A, Recombinant Horse L-Chain Apoferritin N-Terminal Deletion Mutant (Residues 1-4) Length = 171 Back     alignment and structure
>pdb|2G4H|A Chain A, Anomalous Substructure Of Apoferritin Length = 174 Back     alignment and structure
>pdb|4DYY|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin Variant Mic1 Length = 172 Back     alignment and structure
>pdb|2ZA8|A Chain A, Recombinant Horse L-Chain Apoferritin N-Terminal Deletion Mutant (Residues 1-8) Length = 167 Back     alignment and structure
>pdb|3AF8|X Chain X, Crystal Structure Of Pd(Ally)APO-C126afr Length = 174 Back     alignment and structure
>pdb|2CHI|A Chain A, Recombinant Human H Ferritin, K86q And E27d Mutant Length = 183 Back     alignment and structure
>pdb|2CLU|A Chain A, Recombinant Human H Ferritin, K86q And E107d Mutant Length = 183 Back     alignment and structure
>pdb|2GYD|A Chain A, Complex Of Equine Apoferritin With The H-Diaziflurane Photolabeling Reagent Length = 170 Back     alignment and structure
>pdb|3AJO|A Chain A, Crystal Structure Of Wild-Type Human Ferritin H Chain Length = 182 Back     alignment and structure
>pdb|1IES|A Chain A, Tetragonal Crystal Structure Of Native Horse Spleen Ferritin Length = 174 Back     alignment and structure
>pdb|2ZUR|X Chain X, Crystal Structure Of Rh(Nbd)APO-Fr Length = 174 Back     alignment and structure
>pdb|3NP0|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cH49AR52H-Rhlfr Length = 174 Back     alignment and structure
>pdb|2V2P|A Chain A, Mutant (E53,56,57,60q And R59m) Recombinant Horse Spleen Apoferritin Cocrystallized With Haemin In Acidic Conditions Length = 174 Back     alignment and structure
>pdb|2CN7|A Chain A, Recombinant Human H Ferritin, K86q, E27d And E107d Mutant Length = 183 Back     alignment and structure
>pdb|3NOZ|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cR52H-Rhlfr Length = 174 Back     alignment and structure
>pdb|2V2N|A Chain A, Mutant R59m Recombinant Horse Spleen Apoferritin Cocrystallized With Haemin In Acidic Conditions Length = 174 Back     alignment and structure
>pdb|3AJQ|A Chain A, Crystal Structure Of Human H Ferritin E140q Mutant Length = 182 Back     alignment and structure
>pdb|3ES3|A Chain A, Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. The Complex With Gold Ions. Ferritin H8-H9x Mutant Length = 183 Back     alignment and structure
>pdb|2ZG9|X Chain X, Crystal Structure Of Pd(Allyl)APO-H114afr Length = 174 Back     alignment and structure
>pdb|4DZ0|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin Variant Mic1 Labeled With A Dansyl Fluorophore Length = 172 Back     alignment and structure
>pdb|3AJP|A Chain A, Crystal Structure Of Human H Ferritin E140a Mutant Length = 182 Back     alignment and structure
>pdb|1BG7|A Chain A, Localized Unfolding At The Junction Of Three Ferritin Subunits. A Mechanism For Iron Release? Length = 176 Back     alignment and structure
>pdb|1RCD|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Length = 173 Back     alignment and structure
>pdb|2FFX|J Chain J, Structure Of Human Ferritin L. Chain Length = 173 Back     alignment and structure
>pdb|2FG4|A Chain A, Structure Of Human Ferritin L Chain Length = 174 Back     alignment and structure
>pdb|1RCI|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Length = 173 Back     alignment and structure
>pdb|3KXU|A Chain A, Crystal Structure Of Human Ferritin Ftl498instc Pathogenic M Length = 191 Back     alignment and structure
>pdb|3HX2|A Chain A, Crystal Structure Of Human Ferritin Phe167serfsx26 Mutant. This File Is A Part 13 OF THE SPLIT ENTRY AND CONTAINS THE Copies 1 And 2 Of The Total Six Copies Of The Biological Unit That Are Present In The Crystallographic Asymmetric Unit. The Entire Structure Contains Six Copies Of The Biological Unit In The Crystallographic Asymmetric Unit And Is Described In Remark 400 Length = 192 Back     alignment and structure
>pdb|1R03|A Chain A, Crystal Structure Of A Human Mitochondrial Ferritin Length = 182 Back     alignment and structure
>pdb|1RCC|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Length = 173 Back     alignment and structure
>pdb|1H96|A Chain A, Recombinant Mouse L-Chain Ferritin Length = 182 Back     alignment and structure
>pdb|2Z6M|A Chain A, Crystal Structure Of Human Ferritin H8 As Biotemplate For Noble Metal Nanoparticle Synthesis Length = 176 Back     alignment and structure
>pdb|3ERZ|A Chain A, Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions On The Three-Fold Channel Length = 183 Back     alignment and structure
>pdb|1MFR|A Chain A, Crystal Structure Of M Ferritin Length = 176 Back     alignment and structure
>pdb|3KA8|A Chain A, Frog M-Ferritin, Eqh Mutant, With Cobalt Length = 176 Back     alignment and structure
>pdb|3KA6|A Chain A, Frog M-Ferritin, Eed Mutant, With Cobalt Length = 176 Back     alignment and structure
>pdb|3KA9|A Chain A, Frog M-Ferritin, Eeh Mutant, With Cobalt Length = 176 Back     alignment and structure
>pdb|3SH6|A Chain A, Frog M-Ferritin, D122r Mutant, With Magnesium Length = 176 Back     alignment and structure
>pdb|3SHX|A Chain A, Frog M-Ferritin With Magnesium, L134p Mutant Length = 176 Back     alignment and structure
>pdb|3SE1|A Chain A, Frog M-Ferritin With Magnesium, R72d Mutant Length = 176 Back     alignment and structure
>pdb|3A68|A Chain A, Crystal Structure Of Plant Ferritin Reveals A Novel Metal Binding Site That Functions As A Transit Site For Metal Transfer In Ferritin Length = 212 Back     alignment and structure
>pdb|3A9Q|A Chain A, Crystal Structure Analysis Of E173a Variant Of The Soybean Ferritin Sfer4 Length = 212 Back     alignment and structure
>pdb|3VNX|A Chain A, Crystal Structure Of Ferritin From Multicellular Green Algae, Ulva Pertusa Length = 204 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
1z6o_M191 Ferritin heavy chain; metal binding protein, iron 8e-38
1rcd_A173 L ferritin; iron storage; 2.00A {Rana catesbeiana} 1e-37
2cih_A183 Ferritin heavy chain; apoferritin, ferroxidase, DI 1e-37
3ka8_A176 Ferritin, middle subunit; iron storage, DIIRON, ir 2e-36
2v2p_A174 Ferritin light chain; metal transport, iron, haemi 2e-35
3vnx_A204 Ferritin; 4-helix bundle, iron storage, oxidoreduc 3e-35
3a68_A212 Sferh-4, ferritin-4, chloroplastic; 4-helix bundle 4e-35
3kxu_A191 Ferritin; iron storage protein, disorder, iron, me 2e-34
1z6o_A212 Ferritin light chain; metal binding protein, iron 7e-30
3e6s_A168 Ferritin; iron storage, ferroxidase, oxidoreductas 4e-24
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 6e-22
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 2e-21
3oj5_A189 Ferritin family protein; ferroxidase, cytosol, oxi 3e-21
1s3q_A173 Ferritin; ferroxidase, four helix bundle, iron sto 3e-21
1vlg_A176 Ferritin; TM1128, structural genomics, JCSG, prote 2e-20
3qz3_A184 Ferritin; structural genomics, the center for stru 4e-20
1eum_A165 Ferritin 1; ECFTNA, metal binding protein; 2.05A { 5e-20
3bvf_A181 Ferritin; iron storage, metal-binding, oxidoreduct 2e-19
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Length = 191 Back     alignment and structure
 Score =  127 bits (321), Expect = 8e-38
 Identities = 83/180 (46%), Positives = 107/180 (59%), Gaps = 13/180 (7%)

Query: 1   MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60
           M  SC N M QQ+Q E+ ASL YLAMG HFS+D VNRPGFA+           EHA+K  
Sbjct: 17  MHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLF-FDAASEEREHAMKLI 75

Query: 61  SSYLTMRGNLTDYHHH----QGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGT 116
             YL MRG LT+        +   + +W     A++ AL++E+ VT+SIR +I  CE  +
Sbjct: 76  E-YLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACEDDS 134

Query: 117 NNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
                    NDYHL D+LTG+FL+EQYKGQR LAG  ST++K    H  L EF+ DK+ L
Sbjct: 135 EF-------NDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKLL 187
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Length = 173 Back     alignment and structure
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A Length = 183 Back     alignment and structure
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A Length = 176 Back     alignment and structure
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ... Length = 174 Back     alignment and structure
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa} Length = 204 Back     alignment and structure
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Length = 212 Back     alignment and structure
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Length = 191 Back     alignment and structure
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Length = 212 Back     alignment and structure
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} PDB: 3e6r_A Length = 168 Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Length = 174 Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Length = 167 Back     alignment and structure
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Length = 189 Back     alignment and structure
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A Length = 173 Back     alignment and structure
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A* Length = 176 Back     alignment and structure
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} Length = 184 Back     alignment and structure
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Length = 165 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query176
3ka8_A176 Ferritin, middle subunit; iron storage, DIIRON, ir 100.0
3kxu_A191 Ferritin; iron storage protein, disorder, iron, me 100.0
1z6o_M191 Ferritin heavy chain; metal binding protein, iron 100.0
2cih_A183 Ferritin heavy chain; apoferritin, ferroxidase, DI 100.0
1rcd_A173 L ferritin; iron storage; 2.00A {Rana catesbeiana} 100.0
1z6o_A212 Ferritin light chain; metal binding protein, iron 100.0
3vnx_A204 Ferritin; 4-helix bundle, iron storage, oxidoreduc 100.0
2v2p_A174 Ferritin light chain; metal transport, iron, haemi 100.0
3e6s_A168 Ferritin; iron storage, ferroxidase, oxidoreductas 100.0
3a68_A212 Sferh-4, ferritin-4, chloroplastic; 4-helix bundle 100.0
3qz3_A184 Ferritin; structural genomics, the center for stru 100.0
1s3q_A173 Ferritin; ferroxidase, four helix bundle, iron sto 100.0
1eum_A165 Ferritin 1; ECFTNA, metal binding protein; 2.05A { 100.0
3uno_A189 Probable bacterioferritin BFRB; ferroxidase activi 100.0
1krq_A167 Ferritin; H-chain like four-helix bundle, binding 100.0
3bvf_A181 Ferritin; iron storage, metal-binding, oxidoreduct 100.0
1vlg_A176 Ferritin; TM1128, structural genomics, JCSG, prote 100.0
2jd6_0174 Ferritin homolog, ferritin; metal transport, iron, 100.0
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 100.0
3oj5_A189 Ferritin family protein; ferroxidase, cytosol, oxi 99.98
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 99.95
3r2k_A154 Bacterioferritin, BFR; bacterial ferritin, iron bi 99.94
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 99.94
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 99.94
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 99.94
3fvb_A182 Bacterioferritin; niaid, ssgcid, decode, structura 99.93
1lko_A191 Rubrerythrin all-iron(II) form; reduced form, DIIR 99.93
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 99.93
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 99.92
2vzb_A170 Putative bacterioferritin-related protein; DPS, DP 99.92
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 99.91
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 99.9
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 99.9
1ji5_A142 DLP-1; dodecamer, four-helix bundle, metal transpo 99.89
2c41_A158 DPS family DNA-binding stress response protein; ir 99.89
2vxx_A192 Starvation induced DNA binding protein; stress res 99.86
1n1q_A149 DPS protein; four-helix bundle, unknown function; 99.85
1jig_A146 DLP-2; dodecamer, four-helix bundle, metal transpo 99.85
2d5k_A156 DPS, DPS family protein; four helix bundle, metal 99.85
2clb_A188 DPS-like protein; DI-iron carboxylate, hypothetica 99.83
1yuz_A202 Nigerythrin; rubrythrin, rubredoxin, hemerythrin, 99.8
1tjo_A182 Iron-rich DPSA-homolog protein; ferritin, low-iron 99.72
2bk6_A156 Non-heme iron-containing ferritin; DPS (DNA bindin 99.54
2fjc_A156 Antigen TPF1; mini ferritin, iron binding protein, 99.52
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 99.52
2chp_A153 MRGA, metalloregulation DNA-binding stress protein 99.52
2yjk_A161 AFP, DPS; metal-binding protein, iron uptake, ferr 99.52
1o9r_A162 Agrobacterium tumefaciens DPS; iron-binding protei 99.51
2c2u_A207 DPS, DNA-binding stress response protein; DNA-bind 99.46
2cf7_A165 DPR; peroxide resistance, DPS-family, ferritin-lik 99.46
2wlu_A175 DPS-like peroxide resistance protein; DNA-binding, 99.45
2xgw_A199 Peroxide resistance protein; metal binding protein 99.45
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 99.39
2z90_A161 Starvation-inducible DNA-binding protein or FINE t 99.38
2yw6_A183 DNA protection during starvation protein; DNA-bind 99.38
4eve_A164 Neutrophil-activating protein; dodecamer, four-hel 99.36
2c2j_A211 DNA-binding stress response protein; DNA-binding p 99.35
3kwo_A152 Putative bacterioferritin; alpha-helix, bacterial 99.35
3iq1_A159 DPS family protein; csgid, SAD, niaid, metal trans 99.35
2pyb_A151 NAPA, neutrophil activating protein; ferritin, DPS 99.33
3ak8_A167 DNA protection during starvation protein; DPS-like 99.29
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 99.07
2fzf_A175 Hypothetical protein; structural genomics, southea 98.9
3qhb_A179 Symerythrin, ORF180; four-helix bundle, carboxylat 98.69
4a25_A169 DPS, ferritin DPS family protein; metal binding pr 98.36
4etr_A153 Putative uncharacterized protein; DUF2383, domain 98.33
1zs3_A182 Lactococcus lactis Mg1363 DPSA; oxidative stress, 98.15
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 98.15
1zuj_A179 Hypothetical protein llacc01001955; oxidative stre 98.12
3fse_A365 Two-domain protein containing DJ-1/THIJ/PFPI-like 97.97
1o9i_A266 Pseudocatalase; oxidoreductase, hexamer, dimangane 97.24
2v8t_A302 Manganese-containing pseudocatalase; manganese cat 97.05
1zpy_A95 Hypothetical protein NE0167; structural genomics, 95.52
3k6c_A95 Uncharacterized protein NE0167; structural genomic 95.28
3hl1_A 317 Ferritin like protein; structural genomics, joint 94.48
4di0_A144 Rubrerythrin; ssgcid, seattle structural genomics 94.21
2ib0_A170 Conserved hypothetical alanine rich protein; 4-hel 93.81
1vjx_A157 Putative ferritin-like DIIRON-carboxylate protein; 93.69
1j30_A144 144AA long hypothetical rubrerythrin; sulerythrin, 92.85
2gyq_A173 YCFI, putative structural protein; structural geno 91.96
2fzf_A175 Hypothetical protein; structural genomics, southea 91.94
3qhb_A179 Symerythrin, ORF180; four-helix bundle, carboxylat 89.71
2qqy_A149 Sigma B operon; dodecameric alpha-helical, ferriti 89.58
4am5_A159 Bacterioferritin; metal binding protein, ferroxida 89.01
2gs4_A166 Protein YCIF; stress proteins, rubrerythrin, metal 88.52
2e0z_A 345 Virus-like particle; bacteriophage, HK97; 3.60A {P 88.38
2oh3_A167 Rubrerythrin, COG1633: uncharacterized conserved p 86.88
3uoi_A161 Bacterioferritin, BFR; structural genomics, TB str 84.37
3qb9_A174 Bacterioferritin, BFR; cytosol, structural genomic 84.04
3ogh_B171 Protein YCIE; iron-binding, MCSG, four-helix-bundl 83.93
1nfv_A179 Bacterioferritin; 24 subunits in the active molecu 83.56
3hiu_A166 Uncharacterized protein; APC40011, XCC3681, xantho 83.42
2y3q_A158 Bacterioferritin; metal binding protein, redox; HE 82.8
3gvy_A161 Bacterioferritin; iron storage, DI-iron, ferroxida 82.78
1jgc_A161 Bacterioferritin, BFR; iron storage protein, metal 81.8
2fkz_A155 Bacterioferritin; ferroxidase, DIIRON site, iron T 80.13
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A Back     alignment and structure
Probab=100.00  E-value=2.9e-50  Score=312.23  Aligned_cols=164  Identities=27%  Similarity=0.402  Sum_probs=158.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC
Q psy15458          1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVN   80 (176)
Q Consensus         1 ~~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~   80 (176)
                      |+++|+++||+||+.||+|||+|++||+||+++++|++|||+||+++| +|||+||++|+ +||++|||+|.+++|++|+
T Consensus         9 ~~~~v~~~LN~qin~El~As~~Yl~ma~~f~~~d~~l~g~a~~f~~~s-~EE~~HA~kl~-~~i~~rgg~~~l~~i~~p~   86 (176)
T 3ka8_A            9 YHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHS-HEEREHAEKFM-KYQNKRGGRVVLQDIKKPE   86 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHTCCCCCCCCCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCeeeCcccCCC
Confidence            689999999999999999999999999999999999999999999999 99999999999 9999999999999999886


Q ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q psy15458         81 KMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTE  160 (176)
Q Consensus        81 ~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~  160 (176)
                      ..+|+++.++|+.||++|+.+++.|++++++|.+.          +||++++||+.+||+||++.+++++++|++|+++|
T Consensus        87 ~~~~~~~~e~le~aL~~Ek~v~~~l~~l~~la~~~----------~D~~t~~fLe~~fl~eQve~~~~l~~~l~~l~~~g  156 (176)
T 3ka8_A           87 RDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDK----------VDPHLCDFLESEYLEEQVKHIKRIGDFITNLKRLG  156 (176)
T ss_dssp             CSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            78899999999999999999999999999999999          99999999997799999999999999999999999


Q ss_pred             CCCCcceeeecccccC
Q psy15458        161 GTHGKLTEFLMDKEFL  176 (176)
Q Consensus       161 ~~~~~~g~~l~D~~ll  176 (176)
                      ++++|+|+|+||+++|
T Consensus       157 ~~~~~~g~ylfD~~~l  172 (176)
T 3ka8_A          157 LPENGMGEYLFDKHSV  172 (176)
T ss_dssp             TTTCHHHHHHHHHHTC
T ss_pred             CCCCCccHHHhCHHhh
Confidence            8777999999999876
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Back     alignment and structure
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Back     alignment and structure
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A Back     alignment and structure
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Back     alignment and structure
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Back     alignment and structure
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa} Back     alignment and structure
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ... Back     alignment and structure
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A Back     alignment and structure
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Back     alignment and structure
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1 Back     alignment and structure
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A Back     alignment and structure
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Back     alignment and structure
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A Back     alignment and structure
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Back     alignment and structure
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A* Back     alignment and structure
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Back     alignment and structure
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis} Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus} Back     alignment and structure
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus} Back     alignment and structure
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1 Back     alignment and structure
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1 Back     alignment and structure
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp} Back     alignment and structure
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus} Back     alignment and structure
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Back     alignment and structure
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A Back     alignment and structure
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A Back     alignment and structure
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1 Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis} Back     alignment and structure
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A Back     alignment and structure
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A* Back     alignment and structure
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A Back     alignment and structure
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A* Back     alignment and structure
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A Back     alignment and structure
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes} Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str} Back     alignment and structure
>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A Back     alignment and structure
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A Back     alignment and structure
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A Back     alignment and structure
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0 Back     alignment and structure
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A* Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A Back     alignment and structure
>4a25_A DPS, ferritin DPS family protein; metal binding protein, detoxification process; 2.00A {Kineococcus radiotolerans} Back     alignment and structure
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa} Back     alignment and structure
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1 Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1 Back     alignment and structure
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A Back     alignment and structure
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides} Back     alignment and structure
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle, structural genomics, PSI-2, protein structur initiative; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.9 Back     alignment and structure
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1 Back     alignment and structure
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1 Back     alignment and structure
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4 Back     alignment and structure
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1 Back     alignment and structure
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A Back     alignment and structure
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str} Back     alignment and structure
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A* Back     alignment and structure
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4 Back     alignment and structure
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} Back     alignment and structure
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8 Back     alignment and structure
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A* Back     alignment and structure
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Back     alignment and structure
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6} Back     alignment and structure
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Back     alignment and structure
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV} Back     alignment and structure
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Back     alignment and structure
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1 Back     alignment and structure
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Back     alignment and structure
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 176
d1z6om1191 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper(T 4e-33
d1z6oa1200 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper( 5e-31
d1rcda_171 a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesb 6e-27
d1bg7a_173 a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesb 1e-25
d1r03a_171 a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), 1e-23
d1lb3a_179 a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) 7e-23
d1euma_161 a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, 1e-16
d1vlga_164 a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritim 6e-16
d1s3qa1162 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Arch 7e-16
d1krqa_165 a.25.1.1 (A:) Non-hem ferritin {Campylobacter jeju 2e-15
d1nf4a_169 a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {De 1e-04
d2htna1158 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1 0.002
>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]} Length = 191 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]

 Score =  114 bits (286), Expect = 4e-33
 Identities = 83/180 (46%), Positives = 107/180 (59%), Gaps = 13/180 (7%)

Query: 1   MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60
           M  SC N M QQ+Q E+ ASL YLAMG HFS+D VNRPGFA+           EHA+K  
Sbjct: 17  MHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLF-FDAASEEREHAMKLI 75

Query: 61  SSYLTMRGNLTDYHHH----QGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGT 116
             YL MRG LT+        +   + +W     A++ AL++E+ VT+SIR +I  CE  +
Sbjct: 76  E-YLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACEDDS 134

Query: 117 NNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
                    NDYHL D+LTG+FL+EQYKGQR LAG  ST++K    H  L EF+ DK+ L
Sbjct: 135 EF-------NDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKLL 187
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]} Length = 200 Back     information, alignment and structure
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Length = 171 Back     information, alignment and structure
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Length = 173 Back     information, alignment and structure
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Length = 161 Back     information, alignment and structure
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Length = 164 Back     information, alignment and structure
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 162 Back     information, alignment and structure
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Length = 165 Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Length = 169 Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Length = 158 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query176
d1z6om1191 (Apo)ferritin {Cabbage looper(Trichoplusia ni), H 100.0
d1rcda_171 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 100.0
d1r03a_171 (Apo)ferritin {Human (Homo sapiens), mitocondial i 100.0
d1bg7a_173 (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 100.0
d1lb3a_179 (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090] 100.0
d1z6oa1200 (Apo)ferritin {Cabbage looper(Trichoplusia ni), L 100.0
d1krqa_165 Non-hem ferritin {Campylobacter jejuni [TaxId: 197 100.0
d1vlga_164 Non-hem ferritin {Thermotoga maritima [TaxId: 2336 100.0
d1euma_161 Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5 100.0
d1s3qa1162 Non-hem ferritin {Archaeon Archaeoglobus fulgidus 100.0
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 99.96
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 99.96
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 99.95
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 99.94
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 99.88
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 99.87
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 99.86
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 99.53
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 99.28
d1o9ra_162 Dodecameric ferritin homolog {Agrobacterium tumefa 99.16
d1umna_151 Dodecameric ferritin homolog {Streptococcus suis [ 99.08
d1tjoa_180 Dodecameric ferritin homolog {Archaeon Halobacteri 99.05
d1ji5a_142 Dodecameric ferritin homolog {Bacillus anthracis, 99.03
d1jiga_146 Dodecameric ferritin homolog {Bacillus anthracis, 99.02
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 99.02
d2fjca1151 Dodecameric ferritin homolog {Treponema pallidum, 98.92
d1ji4a_144 Dodecameric ferritin homolog {Helicobacter pylori, 98.86
d1n1qa_149 Dodecameric ferritin homolog {Bacillus brevis, Dps 98.82
d2bk6a1150 Dodecameric ferritin homolog {Listeria innocua [Ta 98.78
d2ib0a1142 Hypothetical protein Rv2844 {Mycobacterium tubercu 98.63
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 98.53
d1dpsa_159 Dodecameric ferritin homolog {Escherichia coli, Dp 98.51
d2yw6a1141 Dodecameric ferritin homolog {Mycobacterium smegma 98.33
d1zs3a1171 Dodecameric ferritin homolog {Lactococcus lactis, 98.28
d1zuja1168 Dodecameric ferritin homolog {Lactococcus lactis, 98.2
d1jkva_266 Manganese catalase (T-catalase) {Lactobacillus pla 96.46
d1zpya191 Hypothetical protein NE0167 {Nitrosomonas europaea 96.01
d2cwla1299 Manganese catalase (T-catalase) {Thermus thermophi 95.66
d1yuza1135 Nigerythrin, N-terminal domain {Desulfovibrio vulg 91.54
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 90.34
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 90.01
d2oh3a1152 Uncharacterized protein AMB4284 homologue {Magneto 89.79
d2itba1199 Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Ps 89.46
d2fkza1154 Bacterioferritin (cytochrome b1) {Azotobacter vine 88.6
d1nf4a_169 Bacterioferritin (cytochrome b1) {Desulfovibrio de 87.65
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 85.55
d1nnqa1133 Rubrerythrin, N-terminal domain {Archaeon Pyrococc 85.0
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 82.85
d2htna1158 Bacterioferritin (cytochrome b1) {Escherichia coli 82.6
d1jgca_160 Bacterioferritin (cytochrome b1) {Rhodobacter caps 80.29
>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]

Probab=100.00  E-value=2.6e-50  Score=314.27  Aligned_cols=167  Identities=50%  Similarity=0.823  Sum_probs=156.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc----ccCC
Q psy15458          1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTD----YHHH   76 (176)
Q Consensus         1 ~~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~----~~~i   76 (176)
                      |+++|+++||+||+.|+.|||+|++||+||+++++++|||++||+.+| +|||+||++|+ +|++.|||++.    +.++
T Consensus        17 ~~~~~e~aLn~qIn~El~aSy~Yl~ma~~f~~~~~~l~Gfa~ff~~~s-~EE~eHa~kl~-~Yl~~RGg~v~~~~~~~~~   94 (191)
T d1z6om1          17 MHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAA-SEEREHAMKLI-EYLLMRGELTNDVSSLLQV   94 (191)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHH-HHHHHHHHHHH-HHHHHTTCCSSCCGGGCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCcchhHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCcccccccccCC
Confidence            689999999999999999999999999999998999999999999999 99999999999 99999999874    4455


Q ss_pred             CCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy15458         77 QGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTM  156 (176)
Q Consensus        77 ~~~~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l  156 (176)
                      .+|++..|.+++++|+.||++|+.||++|++|+++|.+.    +|+   .|+++++||+++||+||+++++++++++++|
T Consensus        95 ~~~~~~~~~s~l~a~~~AL~~Ek~vt~~i~~L~~~A~~~----~d~---~d~~~~~~le~~fl~eQve~~~~l~~~~~~L  167 (191)
T d1z6om1          95 RPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACEDD----SEF---NDYHLVDYLTGDFLEEQYKGQRDLAGKASTL  167 (191)
T ss_dssp             CCCSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TTC---CCHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999999999999999999987    555   6799999999999999999999999999999


Q ss_pred             hhhhCCCCcceeeecccccC
Q psy15458        157 RKTEGTHGKLTEFLMDKEFL  176 (176)
Q Consensus       157 ~~~~~~~~~~g~~l~D~~ll  176 (176)
                      ++++++..|+|+|+||++||
T Consensus       168 ~~~~~~~~~Lg~ylfDk~Ll  187 (191)
T d1z6om1         168 KKLMDRHEALGEFIFDKKLL  187 (191)
T ss_dssp             HTTTTTCHHHHHHHHHHHHT
T ss_pred             HHhcCCcchhHHHHhhHHHc
Confidence            99998767899999999986
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]} Back     information, alignment and structure
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Back     information, alignment and structure
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]} Back     information, alignment and structure
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Back     information, alignment and structure
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium tumefaciens, Dps [TaxId: 358]} Back     information, alignment and structure
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus suis [TaxId: 1307]} Back     information, alignment and structure
>d1tjoa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Archaeon Halobacterium salinarum [TaxId: 2242]} Back     information, alignment and structure
>d1ji5a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-1 [TaxId: 1392]} Back     information, alignment and structure
>d1jiga_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-2 [TaxId: 1392]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fjca1 a.25.1.1 (A:27-177) Dodecameric ferritin homolog {Treponema pallidum, TpF1 [TaxId: 160]} Back     information, alignment and structure
>d1ji4a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter pylori, Nap [TaxId: 210]} Back     information, alignment and structure
>d1n1qa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus brevis, Dps [TaxId: 1393]} Back     information, alignment and structure
>d2bk6a1 a.25.1.1 (A:7-156) Dodecameric ferritin homolog {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dpsa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Escherichia coli, Dps [TaxId: 562]} Back     information, alignment and structure
>d2yw6a1 a.25.1.1 (A:17-157) Dodecameric ferritin homolog {Mycobacterium smegmatis [TaxId: 1772]} Back     information, alignment and structure
>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsB [TaxId: 1358]} Back     information, alignment and structure
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsA [TaxId: 1358]} Back     information, alignment and structure
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]} Back     information, alignment and structure
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure