Psyllid ID: psy15517
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 472 | 2.2.26 [Sep-21-2011] | |||||||
| O54852 | 1195 | Potassium voltage-gated c | yes | N/A | 0.781 | 0.308 | 0.657 | 1e-150 | |
| O54853 | 950 | Potassium voltage-gated c | no | N/A | 0.832 | 0.413 | 0.625 | 1e-150 | |
| Q9ER47 | 1195 | Potassium voltage-gated c | no | N/A | 0.730 | 0.288 | 0.687 | 1e-150 | |
| O08962 | 1163 | Potassium voltage-gated c | no | N/A | 0.739 | 0.300 | 0.689 | 1e-150 | |
| Q9NS40 | 1196 | Potassium voltage-gated c | yes | N/A | 0.730 | 0.288 | 0.687 | 1e-150 | |
| Q8WNY2 | 1161 | Potassium voltage-gated c | no | N/A | 0.739 | 0.300 | 0.692 | 1e-150 | |
| O35219 | 1162 | Potassium voltage-gated c | no | N/A | 0.739 | 0.300 | 0.689 | 1e-150 | |
| Q12809 | 1159 | Potassium voltage-gated c | no | N/A | 0.739 | 0.301 | 0.689 | 1e-150 | |
| Q9TSZ3 | 1158 | Potassium voltage-gated c | no | N/A | 0.739 | 0.301 | 0.689 | 1e-150 | |
| Q9H252 | 994 | Potassium voltage-gated c | no | N/A | 0.762 | 0.362 | 0.669 | 1e-149 |
| >sp|O54852|KCNH7_RAT Potassium voltage-gated channel subfamily H member 7 OS=Rattus norvegicus GN=Kcnh7 PE=1 SV=1 | Back alignment and function desciption |
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Score = 533 bits (1372), Expect = e-150, Method: Compositional matrix adjust.
Identities = 272/414 (65%), Positives = 310/414 (74%), Gaps = 45/414 (10%)
Query: 17 RTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAE 76
TTTLIGLLKTARLLRLVRVARK+DRYSEYGAAVL+LLM FALIAHWLACIWYAIGN E
Sbjct: 518 ETTTLIGLLKTARLLRLVRVARKLDRYSEYGAAVLMLLMCIFALIAHWLACIWYAIGNVE 577
Query: 77 KS----SVGWLDILANDTHQFY--INGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRY 130
+ +GWLD L + Y + + GPSIK + L
Sbjct: 578 RPYLTDKIGWLDSLGTQIGKRYNDSDSSSGPSIKDKYVTALY------------------ 619
Query: 131 SEYGAAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSA 190
F F L TSVGFGNV+PNT++EKIF+I VML+GSLMYASIFGNVSA
Sbjct: 620 ------------FTFSSL---TSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSA 664
Query: 191 IIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFP 250
IIQRLYSGTARYH QMLRV+EFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMN VLKGFP
Sbjct: 665 IIQRLYSGTARYHMQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNMVLKGFP 724
Query: 251 ECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYF 310
ECLQADICLHLN+ LL NC AF+GAS GCLRAL++KFKTTHAPPGDTLVH GDVLT+LYF
Sbjct: 725 ECLQADICLHLNQTLLQNCKAFRGASKGCLRALAMKFKTTHAPPGDTLVHCGDVLTALYF 784
Query: 311 ISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDV 370
+SRGSIEIL+DD+V+AILGK+DI+GE L++ GKS+++VRALTYCDLHKI R+DLL+V
Sbjct: 785 LSRGSIEILKDDIVVAILGKNDIFGEMVHLYAKPGKSNADVRALTYCDLHKIQREDLLEV 844
Query: 371 LDLYPEFYNSFTENLEITFYMRDE---EQAGVDPR---CGRHSRRRSGSSSNDR 418
LD+YPEF + F NLE+TF +R E Q+ D C RR S S D+
Sbjct: 845 LDMYPEFSDHFLTNLELTFNLRHESAKSQSINDSEGDTCKLRRRRLSFESEGDK 898
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Pore-forming (alpha) subunit of voltage-gated potassium channel. Channel properties may be modulated by cAMP and subunit assembly. Rattus norvegicus (taxid: 10116) |
| >sp|O54853|KCNH6_RAT Potassium voltage-gated channel subfamily H member 6 OS=Rattus norvegicus GN=Kcnh6 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9ER47|KCNH7_MOUSE Potassium voltage-gated channel subfamily H member 7 OS=Mus musculus GN=Kcnh7 PE=2 SV=2 | Back alignment and function description |
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| >sp|O08962|KCNH2_RAT Potassium voltage-gated channel subfamily H member 2 OS=Rattus norvegicus GN=Kcnh2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9NS40|KCNH7_HUMAN Potassium voltage-gated channel subfamily H member 7 OS=Homo sapiens GN=KCNH7 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8WNY2|KCNH2_RABIT Potassium voltage-gated channel subfamily H member 2 OS=Oryctolagus cuniculus GN=KCNH2 PE=2 SV=3 | Back alignment and function description |
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| >sp|O35219|KCNH2_MOUSE Potassium voltage-gated channel subfamily H member 2 OS=Mus musculus GN=Kcnh2 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q12809|KCNH2_HUMAN Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9TSZ3|KCNH2_CANFA Potassium voltage-gated channel subfamily H member 2 OS=Canis familiaris GN=KCNH2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily H member 6 OS=Homo sapiens GN=KCNH6 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 472 | ||||||
| 332028911 | 929 | Potassium voltage-gated channel subfamil | 0.802 | 0.407 | 0.756 | 0.0 | |
| 328700858 | 1349 | PREDICTED: potassium voltage-gated chann | 0.798 | 0.279 | 0.770 | 0.0 | |
| 328700860 | 1210 | PREDICTED: potassium voltage-gated chann | 0.798 | 0.311 | 0.770 | 0.0 | |
| 189238251 | 937 | PREDICTED: similar to AGAP007709-PA [Tri | 0.747 | 0.376 | 0.801 | 1e-177 | |
| 270008891 | 914 | hypothetical protein TcasGA2_TC015503 [T | 0.747 | 0.386 | 0.801 | 1e-177 | |
| 307180612 | 973 | Potassium voltage-gated channel subfamil | 0.788 | 0.382 | 0.76 | 1e-175 | |
| 242009126 | 444 | voltage-activated ion channel, putative | 0.733 | 0.779 | 0.804 | 1e-175 | |
| 307197082 | 962 | Potassium voltage-gated channel subfamil | 0.788 | 0.386 | 0.76 | 1e-173 | |
| 383854726 | 1055 | PREDICTED: uncharacterized protein LOC10 | 0.805 | 0.360 | 0.748 | 1e-173 | |
| 340724578 | 981 | PREDICTED: potassium voltage-gated chann | 0.805 | 0.387 | 0.736 | 1e-170 |
| >gi|332028911|gb|EGI68929.1| Potassium voltage-gated channel subfamily H member 7 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/432 (75%), Positives = 344/432 (79%), Gaps = 53/432 (12%)
Query: 18 TTTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAE- 76
TTTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHW+ACIWYAIGNAE
Sbjct: 101 TTTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWMACIWYAIGNAER 160
Query: 77 ---KSSVGWLDILANDTHQFYI-NGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSE 132
KS VGWLDILANDTHQFY N TGGPSIK+ + L
Sbjct: 161 PTLKSKVGWLDILANDTHQFYFHNNTGGPSIKSRYITALY-------------------- 200
Query: 133 YGAAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAII 192
F F L TSVGFGNVAPNTD EKIFTI+VML+GSLMYASIFGNVSAII
Sbjct: 201 ----------FTFSSL---TSVGFGNVAPNTDAEKIFTIIVMLIGSLMYASIFGNVSAII 247
Query: 193 QRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPEC 252
QRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPEC
Sbjct: 248 QRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPEC 307
Query: 253 LQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFIS 312
LQADICLHLNRNLLSNC AF+GAS GCLRALSLKFKTTHAPPGDTLVH+GDVLTSLYFIS
Sbjct: 308 LQADICLHLNRNLLSNCRAFEGASQGCLRALSLKFKTTHAPPGDTLVHRGDVLTSLYFIS 367
Query: 313 RGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLD 372
RGSIEIL++DVVMAILGKDDI+GENPC++ T+GKSS NVRALTYCDLHKIHRDDLLDVL
Sbjct: 368 RGSIEILKEDVVMAILGKDDIFGENPCIYPTVGKSSCNVRALTYCDLHKIHRDDLLDVLA 427
Query: 373 LYPEFYNSFTENLEITFYMRDEEQAGVDPRCGRHSRRRSGSSSNDRPTVDVGGGGGLEID 432
LYPEF N F++NLEITF MRDEEQAGVDP R V ++ID
Sbjct: 428 LYPEFSNHFSQNLEITFIMRDEEQAGVDPISAR---------------FPVSTPTDVDID 472
Query: 433 IRRFPSRPARTR 444
RRF RP R R
Sbjct: 473 ARRFAFRPPRYR 484
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Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328700858|ref|XP_003241406.1| PREDICTED: potassium voltage-gated channel subfamily H member 2-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|328700860|ref|XP_001947207.2| PREDICTED: potassium voltage-gated channel subfamily H member 2-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|189238251|ref|XP_973853.2| PREDICTED: similar to AGAP007709-PA [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|270008891|gb|EFA05339.1| hypothetical protein TcasGA2_TC015503 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|307180612|gb|EFN68567.1| Potassium voltage-gated channel subfamily H member 7 [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|242009126|ref|XP_002425343.1| voltage-activated ion channel, putative [Pediculus humanus corporis] gi|212509128|gb|EEB12605.1| voltage-activated ion channel, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|307197082|gb|EFN78450.1| Potassium voltage-gated channel subfamily H member 7 [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|383854726|ref|XP_003702871.1| PREDICTED: uncharacterized protein LOC100881087 [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|340724578|ref|XP_003400658.1| PREDICTED: potassium voltage-gated channel subfamily H member 7-like isoform 2 [Bombus terrestris] gi|350397870|ref|XP_003485016.1| PREDICTED: potassium voltage-gated channel subfamily H member 7-like isoform 2 [Bombus impatiens] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 472 | ||||||
| FB|FBgn0003353 | 855 | sei "seizure" [Drosophila mela | 0.538 | 0.297 | 0.806 | 5.2e-134 | |
| UNIPROTKB|E2RAQ7 | 957 | KCNH6 "Uncharacterized protein | 0.525 | 0.259 | 0.792 | 1e-127 | |
| WB|WBGene00006830 | 863 | unc-103 [Caenorhabditis elegan | 0.644 | 0.352 | 0.663 | 3e-127 | |
| UNIPROTKB|F1MCI9 | 1096 | Bt.103515 "Uncharacterized pro | 0.525 | 0.226 | 0.796 | 8e-127 | |
| UNIPROTKB|F1Q206 | 1164 | KCNH2 "Potassium voltage-gated | 0.525 | 0.213 | 0.796 | 8e-127 | |
| UNIPROTKB|F1Q208 | 1058 | KCNH2 "Potassium voltage-gated | 0.525 | 0.234 | 0.796 | 8e-127 | |
| UNIPROTKB|Q9TSZ3 | 1158 | KCNH2 "Potassium voltage-gated | 0.525 | 0.214 | 0.796 | 8e-127 | |
| UNIPROTKB|C4PFH9 | 1063 | KCNH2 "Voltage-gated potassium | 0.525 | 0.233 | 0.796 | 8e-127 | |
| UNIPROTKB|Q12809 | 1159 | KCNH2 "Potassium voltage-gated | 0.525 | 0.213 | 0.796 | 8e-127 | |
| MGI|MGI:1341722 | 1162 | Kcnh2 "potassium voltage-gated | 0.525 | 0.213 | 0.796 | 8e-127 |
| FB|FBgn0003353 sei "seizure" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 1093 (389.8 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
Identities = 208/258 (80%), Positives = 227/258 (87%)
Query: 143 FNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARY 202
F F L TSVGFGNVAPNTD EK FTI VMLVGSLMYASIFGNVSAIIQRLYSGTARY
Sbjct: 532 FTFTSL---TSVGFGNVAPNTDAEKAFTICVMLVGSLMYASIFGNVSAIIQRLYSGTARY 588
Query: 203 HTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQADICLHLN 262
HTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNS+LKGFPECLQADICLHLN
Sbjct: 589 HTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSLLKGFPECLQADICLHLN 648
Query: 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD 322
R LL+ C+AF ASPGCLRA SLKFKTTHAPPGD LVH+GDVLTSLYFI+RGSIEI R
Sbjct: 649 RKLLTTCAAFSEASPGCLRAFSLKFKTTHAPPGDILVHRGDVLTSLYFIARGSIEIQRAG 708
Query: 323 VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFT 382
++ +LGK+DI+GENPC++ T+GKS+ VRALTYCD+HK+HRDDLLDVLD YPEF SF
Sbjct: 709 NIV-VLGKNDIFGENPCIYPTVGKSNGVVRALTYCDIHKLHRDDLLDVLDSYPEFLESFV 767
Query: 383 ENLEITFYMRDEEQAGVD 400
NL IT+ MRD+E +GVD
Sbjct: 768 SNLVITYNMRDDEHSGVD 785
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| UNIPROTKB|E2RAQ7 KCNH6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| WB|WBGene00006830 unc-103 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MCI9 Bt.103515 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1Q206 KCNH2 "Potassium voltage-gated channel subfamily H member 2" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1Q208 KCNH2 "Potassium voltage-gated channel subfamily H member 2" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9TSZ3 KCNH2 "Potassium voltage-gated channel subfamily H member 2" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|C4PFH9 KCNH2 "Voltage-gated potassium channel subfamily H isoform 3.1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q12809 KCNH2 "Potassium voltage-gated channel subfamily H member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:1341722 Kcnh2 "potassium voltage-gated channel, subfamily H (eag-related), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O54852 | KCNH7_RAT | No assigned EC number | 0.6570 | 0.7817 | 0.3087 | yes | N/A |
| Q9NS40 | KCNH7_HUMAN | No assigned EC number | 0.6875 | 0.7309 | 0.2884 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 472 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 6e-21 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 8e-19 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 8e-14 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 6e-09 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 9e-08 | |
| PRK11753 | 211 | PRK11753, PRK11753, DNA-binding transcriptional du | 7e-06 | |
| pfam07885 | 74 | pfam07885, Ion_trans_2, Ion channel | 2e-04 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 6e-21
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 271 AFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVM 325
F G L L+ + P G+ ++ +GD SLY + GS+E+ + D ++
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60
Query: 326 AILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEF 377
LG D++GE L + S+ VRALT +L + R D +L YPE
Sbjct: 61 GFLGPGDLFGELALLGNG--PRSATVRALTDSELLVLPRSDFRRLLQEYPEL 110
|
In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
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| >gnl|CDD|236969 PRK11753, PRK11753, DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 472 | |||
| KOG0498|consensus | 727 | 100.0 | ||
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0500|consensus | 536 | 100.0 | ||
| KOG0501|consensus | 971 | 100.0 | ||
| KOG0499|consensus | 815 | 100.0 | ||
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.69 | |
| KOG3713|consensus | 477 | 99.62 | ||
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.6 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.55 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.54 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.51 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.51 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.49 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.48 | |
| KOG1113|consensus | 368 | 99.44 | ||
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.43 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.43 | |
| KOG0614|consensus | 732 | 99.38 | ||
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.36 | |
| KOG0614|consensus | 732 | 99.33 | ||
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.29 | |
| KOG1545|consensus | 507 | 99.28 | ||
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.28 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 99.17 | |
| KOG1113|consensus | 368 | 99.08 | ||
| KOG1419|consensus | 654 | 98.87 | ||
| KOG1420|consensus | 1103 | 98.86 | ||
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.77 | |
| KOG4390|consensus | 632 | 98.76 | ||
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 98.64 | |
| KOG2968|consensus | 1158 | 98.58 | ||
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 98.06 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.85 | |
| KOG2968|consensus | 1158 | 97.83 | ||
| KOG3684|consensus | 489 | 97.78 | ||
| KOG1418|consensus | 433 | 97.66 | ||
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.54 | |
| KOG3827|consensus | 400 | 97.31 | ||
| KOG4404|consensus | 350 | 96.96 | ||
| KOG4404|consensus | 350 | 96.92 | ||
| KOG3542|consensus | 1283 | 96.9 | ||
| KOG1418|consensus | 433 | 95.82 | ||
| KOG3542|consensus | 1283 | 95.29 | ||
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 94.53 | |
| KOG3193|consensus | 1087 | 93.53 | ||
| PF07883 | 71 | Cupin_2: Cupin domain; InterPro: IPR013096 This fa | 90.2 | |
| COG4709 | 195 | Predicted membrane protein [Function unknown] | 89.57 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 84.89 | |
| KOG3676|consensus | 782 | 84.24 | ||
| PF08006 | 181 | DUF1700: Protein of unknown function (DUF1700); In | 83.79 |
| >KOG0498|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-59 Score=481.70 Aligned_cols=349 Identities=34% Similarity=0.559 Sum_probs=305.1
Q ss_pred CcccccccchhhHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHH
Q psy15517 1 MSEYHEILSKDFFFL----------QRTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAV-------LLLLMATFALIAH 63 (472)
Q Consensus 1 ~~~~~~~~P~~~~~~----------~~~~~~~~llrl~rllrl~r~~~~i~~~~~~~~~~-------l~~l~~~~~~~~H 63 (472)
++|+.|.||++++.. .....+.+++.+.||+|++|+...++++++..... ..++++.+++++|
T Consensus 167 iiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH 246 (727)
T KOG0498|consen 167 LIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASH 246 (727)
T ss_pred HHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 368999999999765 23446889999999999999999999988754333 5589999999999
Q ss_pred HHHHHHHhhccccc---ccc-cccccccccccccccc--CCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCC
Q psy15517 64 WLACIWYAIGNAEK---SSV-GWLDILANDTHQFYIN--GTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAG 137 (472)
Q Consensus 64 ~~aC~~~~i~~~~~---~~~-~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~ 137 (472)
|+||+||+++..+. ... +|+..... ....+.. .-|+++ ++.+|+ +|
T Consensus 247 ~~gc~wYlia~~~~~~~~~~~tw~~~l~~-~~~~~~~~~~fg~~s-----------------------~~~kY~---~a- 298 (727)
T KOG0498|consen 247 WAGCIWYLIAIERPASCPRKATWLGSLGR-LLSCYNLSFTFGIYS-----------------------LALKYV---YA- 298 (727)
T ss_pred HHHHHHHHHHhcccccCcccccccccccc-ccccCcccccccchh-----------------------HHHHHH---HH-
Confidence 99999999997654 233 77764321 0000000 011111 123444 99
Q ss_pred CccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhCC
Q psy15517 138 KGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQ 217 (472)
Q Consensus 138 ~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~ 217 (472)
+||+++|| ||+||||++|.|..|++|+|++|++|.++||++||+|+.++++...+.++|+.++.++++||++++
T Consensus 299 ---Lyw~l~tL---stvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~ 372 (727)
T KOG0498|consen 299 ---LYWGLSTL---STVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQ 372 (727)
T ss_pred ---HHHHhhHh---hhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCE
Q psy15517 218 IPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDT 297 (472)
Q Consensus 218 i~~~L~~ri~~y~~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~ 297 (472)
+|++|++||++|++|.|..++|+|+++++++||++||.+|.++++.++++++|+|+++|+++++.|+.++++..|+|||+
T Consensus 373 LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~ 452 (727)
T KOG0498|consen 373 LPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEY 452 (727)
T ss_pred CCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcCeEEEEEeeeEEEEEcC----eEEEEeCCCCeec-ccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHh
Q psy15517 298 LVHKGDVLTSLYFISRGSIEILRDD----VVMAILGKDDIYG-ENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLD 372 (472)
Q Consensus 298 I~~~G~~~~~ly~I~~G~v~v~~~~----~~~~~l~~G~~fG-e~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~ 372 (472)
|++|||+.++||||.+|.+++...+ .....+++||+|| |+.... ...|.+.||+|.+.|+++.|++++|..+++
T Consensus 453 iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~-~~~p~t~TVralt~~el~~L~~~dL~~V~~ 531 (727)
T KOG0498|consen 453 IIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWC-LDLPQTRTVRALTYCELFRLSADDLKEVLQ 531 (727)
T ss_pred EEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHH-hcCCCCceeehhhhhhHHhccHHHHHHHHH
Confidence 9999999999999999999999877 8999999999999 655553 225779999999999999999999999999
Q ss_pred hCHHHHHHHHHH
Q psy15517 373 LYPEFYNSFTEN 384 (472)
Q Consensus 373 ~~p~~~~~~~~~ 384 (472)
.||.+...+.+.
T Consensus 532 ~f~~~~~~~l~~ 543 (727)
T KOG0498|consen 532 QFRRLGSKFLQH 543 (727)
T ss_pred HhHHHHHHHHHh
Confidence 999999888874
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0500|consensus | Back alignment and domain information |
|---|
| >KOG0501|consensus | Back alignment and domain information |
|---|
| >KOG0499|consensus | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >KOG3713|consensus | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >KOG1113|consensus | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614|consensus | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >KOG0614|consensus | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >KOG1545|consensus | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >KOG1113|consensus | Back alignment and domain information |
|---|
| >KOG1419|consensus | Back alignment and domain information |
|---|
| >KOG1420|consensus | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG4390|consensus | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >KOG2968|consensus | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG2968|consensus | Back alignment and domain information |
|---|
| >KOG3684|consensus | Back alignment and domain information |
|---|
| >KOG1418|consensus | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG3827|consensus | Back alignment and domain information |
|---|
| >KOG4404|consensus | Back alignment and domain information |
|---|
| >KOG4404|consensus | Back alignment and domain information |
|---|
| >KOG3542|consensus | Back alignment and domain information |
|---|
| >KOG1418|consensus | Back alignment and domain information |
|---|
| >KOG3542|consensus | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >KOG3193|consensus | Back alignment and domain information |
|---|
| >PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) | Back alignment and domain information |
|---|
| >COG4709 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG3676|consensus | Back alignment and domain information |
|---|
| >PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 472 | ||||
| 3ukn_A | 212 | Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN | 1e-48 | ||
| 4f8a_A | 160 | Cyclic Nucleotide Binding-Homology Domain From Mous | 4e-37 | ||
| 3u11_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 9e-18 | ||
| 3otf_A | 220 | Structural Basis For The Camp-Dependent Gating In H | 2e-17 | ||
| 3etq_A | 204 | X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 | 2e-17 | ||
| 4hbn_A | 205 | Crystal Structure Of The Human Hcn4 Channel C-termi | 3e-17 | ||
| 3ffq_A | 202 | Hcn2i 443-640 Apo-State Length = 202 | 3e-17 | ||
| 2q0a_A | 200 | Structure And Rearrangements In The Carboxy-Termina | 5e-17 | ||
| 1q3e_A | 207 | Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | 5e-17 | ||
| 3u10_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 6e-17 | ||
| 3bpz_A | 202 | Hcn2-I 443-460 E502k In The Presence Of Camp Length | 7e-17 | ||
| 1q43_A | 207 | Hcn2i 443-640 In The Presence Of Camp, Selenomethio | 4e-16 | ||
| 3u0z_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 8e-16 | ||
| 2ptm_A | 198 | Structure And Rearrangements In The Carboxy-Termina | 3e-11 | ||
| 3i54_A | 249 | Crystal Structure Of Mtbcrp In Complex With Camp Le | 4e-04 | ||
| 3h3u_A | 224 | Crystal Structure Of Crp (Camp Receptor Protein) Fr | 5e-04 | ||
| 3mzh_A | 225 | Crystal Structure Of Camp Receptor Protein From Myc | 5e-04 | ||
| 3d0s_A | 227 | Camp Receptor Protein From M.Tuberculosis, Camp-Fre | 5e-04 | ||
| 3fwe_A | 210 | Crystal Structure Of The Apo D138l Cap Mutant Lengt | 7e-04 | ||
| 1ruo_A | 209 | Catabolite Gene Activator Protein (Cap) MutantDNA C | 8e-04 | ||
| 1hw5_A | 210 | The CapCRP VARIANT T127LS128A Length = 210 | 8e-04 | ||
| 1run_A | 209 | Catabolite Gene Activator Protein (Cap)DNA COMPLEX | 8e-04 | ||
| 1o3q_A | 200 | Protein-Dna Recognition And Dna Deformation Reveale | 8e-04 | ||
| 2cgp_A | 210 | Catabolite Gene Activator ProteinDNA COMPLEX, ADENO | 8e-04 |
| >pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 | Back alignment and structure |
|
| >pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1 Potassium Channel Length = 160 | Back alignment and structure |
| >pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 | Back alignment and structure |
| >pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 | Back alignment and structure |
| >pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 | Back alignment and structure |
| >pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 | Back alignment and structure |
| >pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 | Back alignment and structure |
| >pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | Back alignment and structure |
| >pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 | Back alignment and structure |
| >pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207 | Back alignment and structure |
| >pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 | Back alignment and structure |
| >pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp Length = 249 | Back alignment and structure |
| >pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From Mycoba Tuberculosis Length = 224 | Back alignment and structure |
| >pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From Mycobacterium Tuberculosis In Complex With Camp And Its Dna Binding Element Length = 225 | Back alignment and structure |
| >pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form Length = 227 | Back alignment and structure |
| >pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant Length = 210 | Back alignment and structure |
| >pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX + Adenosine-3',5'-Cyclic-Monophosphate Length = 209 | Back alignment and structure |
| >pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A Length = 210 | Back alignment and structure |
| >pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX + Adenosine-3',5'-Cyclic-Monophosphate Length = 209 | Back alignment and structure |
| >pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In Crystal Structures Of Cap-Dna Complexes Length = 200 | Back alignment and structure |
| >pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX, ADENOSINE-3', 5'-Cyclic-Monophosphate Length = 210 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 5e-89
Identities = 92/212 (43%), Positives = 140/212 (66%), Gaps = 3/212 (1%)
Query: 190 AIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGF 249
A+ QR+YS + YHT+ +++FIR H++P L QR+ E FQ W+ NGID++ +LK F
Sbjct: 2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDF 61
Query: 250 PECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLY 309
P+ L+ADI +HLN+ LL F+ AS GCLR+LSL KT+ PG+ L+ +GD L ++Y
Sbjct: 62 PDELRADIAMHLNKELLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIY 120
Query: 310 FISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLD 369
F+ GS+E+L+D+ V+AILGK D+ G + + K+++NV+ALTYCDL I L +
Sbjct: 121 FVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLRE 180
Query: 370 VLDLYPEFYNSFTENLE--ITFYMRDEEQAGV 399
VL LYPE+ F ++ +T+ +R+ A +
Sbjct: 181 VLRLYPEYAQKFVSEIQHDLTYNLREGSGADL 212
|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >1ujl_A Potassium voltage-gated channel subfamily H member 2; two helices, amphiphatic helix, membrane protein; NMR {Synthetic} SCOP: j.12.1.1 Length = 42 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195 | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202 | Back alignment and structure |
|---|
| >2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 472 | |||
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 100.0 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 100.0 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 100.0 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 100.0 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.9 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.83 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.8 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.8 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.79 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.78 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.77 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.76 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.76 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.75 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.75 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.75 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.74 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.73 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.73 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.73 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.72 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.72 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.72 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.7 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.7 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.7 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.68 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.68 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.68 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.67 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.67 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.67 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.67 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.65 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.65 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.64 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.64 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.64 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.63 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.63 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.63 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.62 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.62 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.59 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.59 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.58 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.57 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.57 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.57 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.57 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.55 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.54 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.52 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.47 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.46 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.45 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.44 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.37 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.36 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.31 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.31 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 99.22 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.18 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 99.17 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.92 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.91 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.76 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.73 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.72 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.63 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.56 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.5 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 98.5 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.46 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.38 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 98.26 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 96.96 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 92.94 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 91.15 | |
| 3fjs_A | 114 | Uncharacterized protein with RMLC-like cupin fold; | 84.62 | |
| 2ozj_A | 114 | Cupin 2, conserved barrel; cupin superfamily prote | 82.09 | |
| 3rns_A | 227 | Cupin 2 conserved barrel domain protein; structura | 81.95 | |
| 3lwc_A | 119 | Uncharacterized protein; structural genomics, unkn | 80.09 |
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=265.49 Aligned_cols=200 Identities=45% Similarity=0.831 Sum_probs=180.0
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCcHhHHHHHHHHHhHHhhcc
Q psy15517 189 SAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQADICLHLNRNLLSN 268 (472)
Q Consensus 189 ~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~ 268 (472)
++++++++++..+|+++|..+++||+.+++|++|+.||++||+|.|..+++.+++++++.||++|+.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 457888999999999999999999999999999999999999999998889999999999999999999999998877 8
Q ss_pred CccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcce
Q psy15517 269 CSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSS 348 (472)
Q Consensus 269 ~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~ 348 (472)
+|+|++++++++..++..++++.|+|||+|+++||+++++|||.+|.|+++.++..+..+++|++|||.+++.+...+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~~~~~~~ 159 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTN 159 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEECSCCSSSSCCBBC
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCCcCcHHhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999965211899
Q ss_pred eEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15517 349 SNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITF 389 (472)
Q Consensus 349 ~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~ 389 (472)
++|+|.++|+++.|++++|.++++.+|++...+.+.+..++
T Consensus 160 ~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 160 ANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp SEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred eEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887654
|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
| >2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
| >3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} | Back alignment and structure |
|---|
| >3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 472 | ||||
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 1e-26 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 2e-13 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 2e-13 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 6e-13 | |
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 6e-11 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 7e-11 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 2e-10 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 2e-10 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 3e-10 | |
| d1i5za2 | 132 | b.82.3.2 (A:6-137) Catabolite gene activator prote | 6e-10 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 3e-09 | |
| d2oz6a2 | 134 | b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei | 8e-09 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 2e-08 | |
| d1zyba2 | 147 | b.82.3.2 (A:1-147) Probable transcription regulato | 4e-07 | |
| d1o5la1 | 129 | b.82.3.2 (A:1-129) CRP-like transcriptional regula | 4e-06 | |
| d1xl4a2 | 116 | f.14.1.1 (A:23-138) Inward rectifier potassium cha | 3e-04 | |
| d1r3jc_ | 103 | f.14.1.1 (C:) Potassium channel protein {Streptomy | 0.001 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Score = 104 bits (259), Expect = 1e-26
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 3/189 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQ++ +Y++H + D +S+L L+ +
Sbjct: 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREE 60
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + A+ K K PGD ++ +G + +YFI G +
Sbjct: 61 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 120
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 121 SVLTKGNKEMKLSDGSYFGE--ICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 178
Query: 377 FYNSFTENL 385
+F
Sbjct: 179 MRRAFETVA 187
|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147 | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 129 | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 472 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 100.0 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.84 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.82 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.82 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.8 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.8 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.8 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.78 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.78 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.77 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.75 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.72 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.71 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.67 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.66 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.65 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.49 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.4 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.27 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 99.23 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.89 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 96.45 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 93.38 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 92.74 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 90.88 | |
| d2b8ma1 | 108 | Hypothetical protein MJ0764 {Archaeon Methanococcu | 84.78 | |
| d1v70a_ | 105 | Hypothetical protein TTHA0104 {Thermus thermophilu | 83.27 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-33 Score=252.12 Aligned_cols=191 Identities=26% Similarity=0.489 Sum_probs=180.3
Q ss_pred chhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCcHhHHHHHHHHHhHHhhccCccccCC
Q psy15517 196 YSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQADICLHLNRNLLSNCSAFKGA 275 (472)
Q Consensus 196 ~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~ 275 (472)
|+..++|+++|..+++||+.+++|++|+.||++||+|.|.. ++.+++++++.||++|+.++..+++.++++++|+|+++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 45678999999999999999999999999999999999975 67788999999999999999999999999999999999
Q ss_pred CHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcc
Q psy15517 276 SPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALT 355 (472)
Q Consensus 276 ~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~ 355 (472)
++.++..|+..+++..|.|||+|+++|++++.+|||.+|.|++..++.....+++|++||+.+++.+ .+++++++|.+
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~--~~~~~~~~a~~ 157 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR--GRRTASVRADT 157 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCCEEEECTTCEECHHHHHHC--SBCSSEEEESS
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCcceeeeccceeeeeeeccCC--CcccccceecC
Confidence 9999999999999999999999999999999999999999999988877889999999999999965 78999999999
Q ss_pred eEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15517 356 YCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITF 389 (472)
Q Consensus 356 ~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~ 389 (472)
+|+++.|++++|.++++.+|++...+.+.+..++
T Consensus 158 ~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL 191 (193)
T d1q3ea_ 158 YCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRL 191 (193)
T ss_dssp CEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred ceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999988776554
|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
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| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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