Psyllid ID: psy15518


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
MTLVSVVFQVLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHYLRGWFIIDLVAAIPFDLLIFGSETEETLDSRELPLSMSIEMHFKLLTSVMTKWIGLKRLTLPFLYDMLY
ccccHHHHHHHcccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccEEEEEcccEEEEEEEEEEEEEEEEEEcccEEEEcHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccHHHHHHHHHccccccHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccEHEEEcccccHcccccccccccccHHHHHHHHHHHHHHHHEEEccEEEEcccccEEccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHc
MTLVSVVFQVLSLgadvlpeyklqtprihkwtilhyspfKAVWDWLILILVVYTAIFTPYVAAFLlnepdftnrtrnirrysdpiVFVDLIVDVTFIVDIAINFRttyvnandevvsnpglialhYLRGWFIIDLVAaipfdllifgseteetldsrelplsMSIEMHFKLLTSVMTKWiglkrltlpflydmly
MTLVSVVFQVLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHYLRGWFIIDLVAAIPFDLLIFGSETEETLDSRELPLSMSIEMHFKLLTSVMTkwiglkrltlpflydmly
MTLVSVVFQVLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHYLRGWFIIDLVAAIPFDLLIFGSETEETLDSRELPLSMSIEMHFKLLTSVMTKWIGLKRLTLPFLYDMLY
**LVSVVFQVLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHYLRGWFIIDLVAAIPFDLLIFGSETEETLDSRELPLSMSIEMHFKLLTSVMTKWIGLKRLTLPFLYDML*
***************************IHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHYLRGWFIIDLVAAIPFDLLIFGSETEETLDSRELPLSMSIEMHFKLLTSVMTKWIGLKRLTLPFLYDMLY
MTLVSVVFQVLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHYLRGWFIIDLVAAIPFDLLIFGSETEETLDSRELPLSMSIEMHFKLLTSVMTKWIGLKRLTLPFLYDMLY
***VSVVFQVLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHYLRGWFIIDLVAAIPFDLLIFGSETEETLDSRELPLSMSIEMHFKLLTSVMTKWIGLKRLTLPFLYDMLY
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTLVSVVFQVLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHYLRGWFIIDLVAAIPFDLLIFGSETEETLDSRELPLSMSIEMHFKLLTSVMTKWIGLKRLTLPFLYDMLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
O35219 1162 Potassium voltage-gated c yes N/A 0.758 0.127 0.722 8e-62
O08962 1163 Potassium voltage-gated c yes N/A 0.758 0.127 0.716 2e-61
Q12809 1159 Potassium voltage-gated c yes N/A 0.758 0.127 0.722 8e-61
Q8WNY2 1161 Potassium voltage-gated c yes N/A 0.758 0.127 0.722 1e-60
Q9TSZ3 1158 Potassium voltage-gated c yes N/A 0.758 0.127 0.716 2e-60
Q9PT84 526 Potassium voltage-gated c no N/A 0.753 0.279 0.734 2e-59
O54852 1195 Potassium voltage-gated c no N/A 0.748 0.122 0.727 2e-59
Q9ER47 1195 Potassium voltage-gated c no N/A 0.748 0.122 0.727 2e-59
Q9NS40 1196 Potassium voltage-gated c no N/A 0.748 0.122 0.727 3e-59
Q9H252 994 Potassium voltage-gated c no N/A 0.748 0.146 0.714 2e-58
>sp|O35219|KCNH2_MOUSE Potassium voltage-gated channel subfamily H member 2 OS=Mus musculus GN=Kcnh2 PE=2 SV=2 Back     alignment and function desciption
 Score =  236 bits (602), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 107/148 (72%), Positives = 125/148 (84%)

Query: 7   VFQVLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLL 66
           V QVLSLGADVLPEYKLQ PRIH+WTILHYSPFKAVWDWLIL+LV+YTA+FTPY AAFLL
Sbjct: 376 VTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLL 435

Query: 67  NEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHY 126
            E +  ++  +      P+  VDLIVD+ FIVDI INFRTTYVNAN+EVVS+PG IA+HY
Sbjct: 436 KETEDGSQAPDCGYACQPLAVVDLIVDIMFIVDILINFRTTYVNANEEVVSHPGRIAVHY 495

Query: 127 LRGWFIIDLVAAIPFDLLIFGSETEETL 154
            +GWF+ID+VAAIPFDLLIFGS +EE +
Sbjct: 496 FKGWFLIDMVAAIPFDLLIFGSGSEELI 523




Pore-forming (alpha) subunit of voltage-gated inwardly rectifying potassium channel. Channel properties are modulated by cAMP and subunit assembly. Mediates the rapidly activating component of the delayed rectifying potassium current in heart (IKr).
Mus musculus (taxid: 10090)
>sp|O08962|KCNH2_RAT Potassium voltage-gated channel subfamily H member 2 OS=Rattus norvegicus GN=Kcnh2 PE=1 SV=1 Back     alignment and function description
>sp|Q12809|KCNH2_HUMAN Potassium voltage-gated channel subfamily H member 2 OS=Homo sapiens GN=KCNH2 PE=1 SV=1 Back     alignment and function description
>sp|Q8WNY2|KCNH2_RABIT Potassium voltage-gated channel subfamily H member 2 OS=Oryctolagus cuniculus GN=KCNH2 PE=2 SV=3 Back     alignment and function description
>sp|Q9TSZ3|KCNH2_CANFA Potassium voltage-gated channel subfamily H member 2 OS=Canis familiaris GN=KCNH2 PE=2 SV=1 Back     alignment and function description
>sp|Q9PT84|KCNH2_CHICK Potassium voltage-gated channel subfamily H member 2 (Fragment) OS=Gallus gallus GN=KCNH2 PE=2 SV=1 Back     alignment and function description
>sp|O54852|KCNH7_RAT Potassium voltage-gated channel subfamily H member 7 OS=Rattus norvegicus GN=Kcnh7 PE=1 SV=1 Back     alignment and function description
>sp|Q9ER47|KCNH7_MOUSE Potassium voltage-gated channel subfamily H member 7 OS=Mus musculus GN=Kcnh7 PE=2 SV=2 Back     alignment and function description
>sp|Q9NS40|KCNH7_HUMAN Potassium voltage-gated channel subfamily H member 7 OS=Homo sapiens GN=KCNH7 PE=2 SV=2 Back     alignment and function description
>sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily H member 6 OS=Homo sapiens GN=KCNH6 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
307180612 973 Potassium voltage-gated channel subfamil 0.733 0.146 0.784 2e-64
270008891 914 hypothetical protein TcasGA2_TC015503 [T 0.728 0.155 0.784 4e-63
189238251 937 PREDICTED: similar to AGAP007709-PA [Tri 0.728 0.151 0.784 4e-63
291237039 1288 PREDICTED: voltage-gated channel, putati 0.743 0.112 0.729 2e-62
328782740 1054 PREDICTED: hypothetical protein LOC41049 0.738 0.136 0.751 3e-62
340724576 1053 PREDICTED: potassium voltage-gated chann 0.738 0.136 0.751 4e-62
241159420 1041 voltage-gated channel, putative [Ixodes 0.738 0.138 0.772 6e-62
340724578 981 PREDICTED: potassium voltage-gated chann 0.748 0.148 0.748 7e-62
328700860 1210 PREDICTED: potassium voltage-gated chann 0.784 0.126 0.726 2e-61
328700858 1349 PREDICTED: potassium voltage-gated chann 0.784 0.113 0.726 2e-61
>gi|307180612|gb|EFN68567.1| Potassium voltage-gated channel subfamily H member 7 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 113/144 (78%), Positives = 133/144 (92%), Gaps = 1/144 (0%)

Query: 10  VLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEP 69
           VLSLGADVLPEYKLQ+PRIHKWTILHYSPFKAVWDW+IL+LV+YTAIFTPYVAAF+L++P
Sbjct: 1   VLSLGADVLPEYKLQSPRIHKWTILHYSPFKAVWDWIILLLVMYTAIFTPYVAAFVLSDP 60

Query: 70  DFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHYLRG 129
           D+ +R +N +   DPIV +D IVDVTFIVDI INFRTT+VN+NDEVVS+PG IA+HYL+G
Sbjct: 61  DYNSR-KNKKYSDDPIVIIDFIVDVTFIVDIIINFRTTFVNSNDEVVSHPGKIAVHYLKG 119

Query: 130 WFIIDLVAAIPFDLLIFGSETEET 153
           WFIIDLVAAIPFDLL+ GS+T+ET
Sbjct: 120 WFIIDLVAAIPFDLLLVGSDTDET 143




Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008891|gb|EFA05339.1| hypothetical protein TcasGA2_TC015503 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189238251|ref|XP_973853.2| PREDICTED: similar to AGAP007709-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|291237039|ref|XP_002738449.1| PREDICTED: voltage-gated channel, putative-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|328782740|ref|XP_393977.4| PREDICTED: hypothetical protein LOC410498 [Apis mellifera] Back     alignment and taxonomy information
>gi|340724576|ref|XP_003400657.1| PREDICTED: potassium voltage-gated channel subfamily H member 7-like isoform 1 [Bombus terrestris] gi|350397867|ref|XP_003485015.1| PREDICTED: potassium voltage-gated channel subfamily H member 7-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|241159420|ref|XP_002408563.1| voltage-gated channel, putative [Ixodes scapularis] gi|215494354|gb|EEC03995.1| voltage-gated channel, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|340724578|ref|XP_003400658.1| PREDICTED: potassium voltage-gated channel subfamily H member 7-like isoform 2 [Bombus terrestris] gi|350397870|ref|XP_003485016.1| PREDICTED: potassium voltage-gated channel subfamily H member 7-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|328700860|ref|XP_001947207.2| PREDICTED: potassium voltage-gated channel subfamily H member 2-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328700858|ref|XP_003241406.1| PREDICTED: potassium voltage-gated channel subfamily H member 2-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
UNIPROTKB|G1K2Y3 522 Gga.55796 "Uncharacterized pro 0.753 0.281 0.734 5.3e-56
UNIPROTKB|Q9PT84 526 KCNH2 "Potassium voltage-gated 0.753 0.279 0.734 5.3e-56
UNIPROTKB|F1NBY6 878 Gga.55796 "Uncharacterized pro 0.753 0.167 0.734 1.5e-55
MGI|MGI:1341722 1162 Kcnh2 "potassium voltage-gated 0.758 0.127 0.722 2.1e-54
UNIPROTKB|G5E9I0 888 KCNH2 "Potassium voltage-gated 0.758 0.166 0.722 2.8e-54
RGD|621414 1163 Kcnh2 "potassium voltage-gated 0.758 0.127 0.716 3.4e-54
UNIPROTKB|F1LN86 1163 Kcnh2 "Potassium voltage-gated 0.758 0.127 0.716 3.4e-54
UNIPROTKB|F1MCI9 1096 Bt.103515 "Uncharacterized pro 0.758 0.135 0.722 4.7e-54
UNIPROTKB|C4PFH9 1063 KCNH2 "Voltage-gated potassium 0.758 0.139 0.722 6.9e-54
UNIPROTKB|Q12809 1159 KCNH2 "Potassium voltage-gated 0.758 0.127 0.722 9.1e-54
UNIPROTKB|G1K2Y3 Gga.55796 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 108/147 (73%), Positives = 123/147 (83%)

Query:     7 VFQVLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLL 66
             V QVLSLGADVLPEYKLQ PRIH+WTILHYSPFKAVWDWLIL+LV+YTA+FTPY AAFLL
Sbjct:    70 VTQVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLL 129

Query:    67 NEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHY 126
             NE     +  N     DP+  +DLIVD+ FIVDI INFRTTYVN NDEVVS+PG IA+HY
Sbjct:   130 NEEQGEEKHWNCSYSCDPLNIIDLIVDIMFIVDIVINFRTTYVNINDEVVSHPGKIAIHY 189

Query:   127 LRGWFIIDLVAAIPFDLLIFGSETEET 153
              +GWF+ID+VAAIPFDLLIF S ++ET
Sbjct:   190 FKGWFLIDMVAAIPFDLLIFRSGSDET 216




GO:0005249 "voltage-gated potassium channel activity" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
UNIPROTKB|Q9PT84 KCNH2 "Potassium voltage-gated channel subfamily H member 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBY6 Gga.55796 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1341722 Kcnh2 "potassium voltage-gated channel, subfamily H (eag-related), member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G5E9I0 KCNH2 "Potassium voltage-gated channel subfamily H member 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621414 Kcnh2 "potassium voltage-gated channel, subfamily H (eag-related), member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LN86 Kcnh2 "Potassium voltage-gated channel subfamily H member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MCI9 Bt.103515 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|C4PFH9 KCNH2 "Voltage-gated potassium channel subfamily H isoform 3.1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q12809 KCNH2 "Potassium voltage-gated channel subfamily H member 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O08962KCNH2_RATNo assigned EC number0.71620.75890.1272yesN/A
Q8WNY2KCNH2_RABITNo assigned EC number0.72290.75890.1274yesN/A
Q12809KCNH2_HUMANNo assigned EC number0.72290.75890.1276yesN/A
Q9TSZ3KCNH2_CANFANo assigned EC number0.71620.75890.1278yesN/A
O35219KCNH2_MOUSENo assigned EC number0.72290.75890.1273yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 2e-11
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information
 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 19/130 (14%)

Query: 19  PEYKLQTPRIHKWTILHYSPFKA---VWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRT 75
           P Y         W I   SP  +    W+ L+++LV Y+A   P+  AFL   P    R 
Sbjct: 40  PSYNQNHIGSDGWII---SPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASP---KRG 93

Query: 76  RNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEV-VSNPGLIALHYLRGWFIID 134
             I          D +VD+ F VDI + F   Y++   ++ V +   IA+ YL  WF++D
Sbjct: 94  LEI---------ADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWFLMD 144

Query: 135 LVAAIPFDLL 144
           + + IPF  L
Sbjct: 145 VASTIPFQAL 154


Length = 823

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
KOG0501|consensus 971 99.94
KOG0498|consensus 727 99.93
PLN03192 823 Voltage-dependent potassium channel; Provisional 99.89
KOG0500|consensus 536 99.73
KOG0499|consensus 815 99.72
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 98.88
PF00520 200 Ion_trans: Ion transport protein calcium channel s 97.68
KOG3713|consensus 477 92.45
KOG1545|consensus 507 89.93
KOG2302|consensus 1956 81.72
>KOG0501|consensus Back     alignment and domain information
Probab=99.94  E-value=2e-27  Score=215.50  Aligned_cols=171  Identities=38%  Similarity=0.715  Sum_probs=151.4

Q ss_pred             hhhhHHHhcCCCCCcccccccCCCCcCeEEccCChHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCccccccccCCCc
Q psy15518          4 VSVVFQVLSLGADVLPEYKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSD   83 (195)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~P~s~~~~~Wd~i~~~~~~~~~~~iP~~iaF~~~~~~~~~~~~~~~~~~~   83 (195)
                      -|+.-|+..||+|.|||+.-+.|+.++.+|..++.|+-.||.++++..+|+++++||.++|.....+.           .
T Consensus       181 hS~la~vm~Lg~DilPQYrQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~-----------v  249 (971)
T KOG0501|consen  181 HSNLAEVMQLGSDILPQYRQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNN-----------V  249 (971)
T ss_pred             chhHHHHHHhccccchhhhhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCc-----------e
Confidence            37888999999999999999999999999999999999999999999999999999999999876531           4


Q ss_pred             hHHHHHHHHHHHHHHHHhHHhceeEEecCCeEEecHHHHHHHcchhhhHhhhhhhccHHHHHhhcCCcc----ccccchh
Q psy15518         84 PIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLIALHYLRGWFIIDLVAAIPFDLLIFGSETEE----TLDSREL  159 (195)
Q Consensus        84 ~~~~i~~i~dv~f~iDIil~f~t~y~d~~G~~V~d~~~Ia~~Ylk~~F~~Dlis~lPl~~i~~~~~~~~----~l~~~rl  159 (195)
                      .|.++|.++|++|++||+++|+|.|..+.|++|.||+.|+.||+|+||++|++|++|+|++..+-...+    .....|+
T Consensus       250 s~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKV  329 (971)
T KOG0501|consen  250 SWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKV  329 (971)
T ss_pred             eEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHH
Confidence            577889999999999999999999999889999999999999999999999999999999986654333    2456799


Q ss_pred             hhHhhHHHHHHHHHHHHHhhhhhhhhHH
Q psy15518        160 PLSMSIEMHFKLLTSVMTKWIGLKRLTL  187 (195)
Q Consensus       160 ~rllk~~rlf~~l~~~~~k~~~~~r~~~  187 (195)
                      +|++|+-|.-.++++-.+  +|+.=..+
T Consensus       330 VRLLRLGRVaRKLD~YlE--YGAA~LvL  355 (971)
T KOG0501|consen  330 VRLLRLGRVARKLDHYLE--YGAAVLVL  355 (971)
T ss_pred             HHHHHHHHHHHHHHHHHH--hhHHHHHH
Confidence            999999999999988665  46654443



>KOG0498|consensus Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>KOG2302|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 98.78
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 97.95
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 97.85
1ors_C132 Potassium channel; voltage-dependent, voltage sens 97.81
3rvy_A 285 ION transport protein; tetrameric ION channel, vol 96.71
3beh_A 355 MLL3241 protein; transmembrane protein, membrane p 96.27
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 95.77
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
Probab=98.78  E-value=1.2e-08  Score=82.71  Aligned_cols=104  Identities=15%  Similarity=0.163  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccCCCCCccccccccCCCchHHHHHHHHHHHHHHHHhHHhceeEEecCCeEEecHHH
Q psy15518         42 VWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGL  121 (195)
Q Consensus        42 ~Wd~i~~~~~~~~~~~iP~~iaF~~~~~~~~~~~~~~~~~~~~~~~i~~i~dv~f~iDIil~f~t~y~d~~G~~V~d~~~  121 (195)
                      .||..++++.+++...+........+..           +...+..+|.+++++|.+|+++++.++.         +   
T Consensus         9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~-----------~~~~l~~~d~~~~~iF~~e~~lr~~~~~---------~---   65 (223)
T 1orq_C            9 LVELGVSYAALLSVIVVVVECTMQLSGE-----------YLVRLYLVDLILVIILWADYAYRAYKSG---------D---   65 (223)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHTTC-----------TTTHHHHHHHHHHHHHHHHHHHHHHTTS---------C---
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccChh-----------hhhHHHHHHHHHHHHHHHHHHHHHcccc---------c---
Confidence            5899999999999998887753322221           1256788999999999999999999862         2   


Q ss_pred             HHHHcchhhhHhhhhhhccHHHHHhh-cCC--ccccccchhhhHhhHHHHHH
Q psy15518        122 IALHYLRGWFIIDLVAAIPFDLLIFG-SET--EETLDSRELPLSMSIEMHFK  170 (195)
Q Consensus       122 Ia~~Ylk~~F~~Dlis~lPl~~i~~~-~~~--~~~l~~~rl~rllk~~rlf~  170 (195)
                       .++|+|+ +++|++|++|++..... .+.  ...++..|++|++|+.|+++
T Consensus        66 -~~~y~~~-~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~  115 (223)
T 1orq_C           66 -PAGYVKK-TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIIS  115 (223)
T ss_dssp             -HHHHHHH-HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHH-hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence             3689988 99999999999876531 111  12344444444444444444



>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 97.72
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.72  E-value=6.7e-05  Score=54.58  Aligned_cols=108  Identities=15%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccCCCCCccccccccCCCchHHHHHHHHHHHHHHHHhHHhceeEEecCCeEEecHHH
Q psy15518         42 VWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGL  121 (195)
Q Consensus        42 ~Wd~i~~~~~~~~~~~iP~~iaF~~~~~~~~~~~~~~~~~~~~~~~i~~i~dv~f~iDIil~f~t~y~d~~G~~V~d~~~  121 (195)
                      ..|..+.++++.+...+-.+-- ++...+          +...+..+|.++-++|.+|.++++-.+     |    ++  
T Consensus         7 ~~e~~i~~lillnvi~~~let~-~~~~~~----------~~~~l~~~e~v~~~iF~~E~~lrl~~~-----~----~~--   64 (132)
T d1orsc_           7 LVELGVSYAALLSVIVVVVEYT-MQLSGE----------YLVRLYLVDLILVIILWADYAYRAYKS-----G----DP--   64 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-SCCCSH----------HHHHHHHHHHHHHHHHHHHHHHHHHHT-----T----ST--
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-cccchh----------hhHHHHHHHHHHHHHHHHHHHHHHHhC-----C----cc--
Confidence            4677888888888887766642 221111          124568899999999999999998743     1    11  


Q ss_pred             HHHHcchhhhHhhhhhhccHHHHHhhcCCccccccchhhhHhhHHHHHHHHHH
Q psy15518        122 IALHYLRGWFIIDLVAAIPFDLLIFGSETEETLDSRELPLSMSIEMHFKLLTS  174 (195)
Q Consensus       122 Ia~~Ylk~~F~~Dlis~lPl~~i~~~~~~~~~l~~~rl~rllk~~rlf~~l~~  174 (195)
                        .+|.+ |-++|+++++|........+....++..|+.|++|+.|+.+..++
T Consensus        65 --~~~~~-~~~iDl~ai~p~~~~~~~~~~~~~lr~lR~~R~~R~lrl~~~~~~  114 (132)
T d1orsc_          65 --AGYVK-KTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISR  114 (132)
T ss_dssp             --TTTTT-TCGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             --ceeCC-cchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              12443 357999999998765544332234555555555555555554433