Psyllid ID: psy1555

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
LSTKTITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQIVNPESKCATVEHIQGKDT
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHcccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHccccHHHHccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccHHHcccccccEEEEEEEccccccccEEEEEcccccEccccHHHHHHHHHEEccccccEcccccccccHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccc
Coil and Loop (DISEMBL)
lstktitkstsalffKPEVQELLLKLTRIDLSKVFRkqkygqelkppeykfltTEEVEKLKEEAYNRAIKkmqmppivparddsklevlsndkellghdvckyvftditfgisdakRIIVvrepdgllreantnerhrmnniyfsrpgatykhpdmfeEENLKALCDRKEYVFILDRaatqyepddqlyHNILNTTFthihenngfdhlrstrhfGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQIvnpeskcatvehiqgkdt
Flexible Loop (DISEMBL)
lstktitkstsalffkpevQELLLKLtridlskvfrkqkygqelkppeykfltteEVEKLKEEAYNRaikkmqmppivparddSKLEVLSNdkellghdVCKYVFTDitfgisdakriivvrepdgllreantnerhrmnniyfsrpgatyKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQIVNPeskcatvehiqgkdt
Low Complexity Region (SEG)
LSTKTITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFltteeveklkeeAYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFlannniidnlllqnlHCNMIEDAVWLIKVYQIVNPESKCATVEHIQGKDT
Disordered region (IsUnstruct)
***********ALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELK**EYKFLTT*********************************VLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREAN****HRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQIVNPESKCATV********
Disordered Region (DISOPRED)
**********SALFFKPEVQELLLKLTRIDLSKVFRKQK*****KPPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQIVNPESK************
Disordered Region (DISEMBL)
LSTKTITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQIVNPESKCA**********
Disordered Region (DISPRO)
**********SALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQIVNPESKC*T*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSTKTITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQIVNPESKCATVEHIQGKDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
P82649	359	28S ribosomal protein S22	yes	N/A	0.904	0.682	0.383	3e-46
P82650	360	28S ribosomal protein S22	yes	N/A	0.889	0.669	0.384	6e-46
Q9CXW2	359	28S ribosomal protein S22	yes	N/A	0.904	0.682	0.370	2e-43

>sp|P82649|RT22_BOVIN 28S ribosomal protein S22, mitochondrial OS=Bos taurus GN=MRPS22 PE=1 SV=2

 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 149/248 (60%), Gaps = 3/248 (1%)

Query: 14  FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQ 73
           F   EVQ +L+K+T +DL K+F+     QE KPP YK +T  ++E+   +A   A  +++
Sbjct: 69  FMDEEVQSILIKMTGLDLLKIFKPAV--QETKPPTYKLMTQAQLEEATRQAIEAAKVRLK 126

Query: 74  MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
           MPP++  R     +VL+ DK L G +  KYVFTDI++ I   +R IVVREP G LR+A+ 
Sbjct: 127 MPPVLEERTPIN-DVLAEDKILEGTETGKYVFTDISYSIPHRERFIVVREPSGTLRKASW 185

Query: 134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
            ER RM  IYF + G     P +F EENL+ +  +  +V +L+    Q+EPD   Y  + 
Sbjct: 186 EERDRMIQIYFPKEGRRVLTPVIFREENLQTMYSQDRHVDVLNLCVAQFEPDSADYIKVH 245

Query: 194 NTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQI 253
           + T+  I +   +D LRSTRHFG + ++  N   ID LL+  +  ++++DA  L+++Y I
Sbjct: 246 HQTYEDIDKYGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDAASLVQLYHI 305

Query: 254 VNPESKCA 261
           ++P+ + A
Sbjct: 306 LHPDGQSA 313

Bos taurus (taxid: 9913)

>sp|P82650|RT22_HUMAN 28S ribosomal protein S22, mitochondrial OS=Homo sapiens GN=MRPS22 PE=1 SV=1

 Score =  184 bits (467), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 151/252 (59%), Gaps = 11/252 (4%)

Query: 14  FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQ 73
           F   EVQ +L K+T ++L K F+     QELKPP YK +T  ++E+   +A   A  +++
Sbjct: 70  FMDEEVQSILTKMTGLNLQKTFKPAI--QELKPPTYKLMTQAQLEEATRQAVEAAKVRLK 127

Query: 74  MPPI----VPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLR 129
           MPP+    VP  D     VL+ DK L G +  KYVFTDI++ I   +R IVVREP G LR
Sbjct: 128 MPPVLEERVPIND-----VLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLR 182

Query: 130 EANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLY 189
           +A+  ER RM  +YF + G     P +F+EENL+ +  +  +V +L+    Q+EPD   Y
Sbjct: 183 KASWEERDRMIQVYFPKEGRKILTPIIFKEENLRTMYSQDRHVDVLNLCFAQFEPDSTEY 242

Query: 190 HNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIK 249
             + + T+  I +   +D LRSTR+FG +V++  NN  ID LL+  +  ++I+DA  L++
Sbjct: 243 IKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDATNLVQ 302

Query: 250 VYQIVNPESKCA 261
           +Y +++P+ + A
Sbjct: 303 LYHVLHPDGQSA 314

Homo sapiens (taxid: 9606)

>sp|Q9CXW2|RT22_MOUSE 28S ribosomal protein S22, mitochondrial OS=Mus musculus GN=Mrps22 PE=2 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 146/248 (58%), Gaps = 3/248 (1%)

Query: 14  FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQ 73
           F   EVQ +L K+T +DL K FR     Q LKPP YK +T  ++E+    A   A  +++
Sbjct: 69  FMDEEVQRILTKITGLDLQKTFRPAI--QPLKPPTYKLMTQAQLEEATRLAVEAAKVRLK 126

Query: 74  MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
           MPP++  R     +VL+ DK L G +  KYVFTDI++ I   +R IVVREP G LR+A+ 
Sbjct: 127 MPPVLEERKPIN-DVLAEDKILEGTETNKYVFTDISYNIPHRERFIVVREPSGTLRKASW 185

Query: 134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
            ER R+  IYF + G     P +F++ENLK +  +  +  +L+    Q+EPD   Y  + 
Sbjct: 186 EERDRVIQIYFPKEGRRVLPPVIFKDENLKTMYSQDRHADVLNLCVAQFEPDSAEYIKVH 245

Query: 194 NTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQI 253
           + T+  I  +  ++ LRSTRHFG + ++  N   ID LL+  +  ++++DA  L+++Y +
Sbjct: 246 HQTYEDIDRHGKYELLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDATSLVQLYHM 305

Query: 254 VNPESKCA 261
           ++P+ + A
Sbjct: 306 LHPDGQSA 313

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
239791210	339	ACYPI001532 [Acyrthosiphon pisum]	0.926	0.740	0.492	3e-62
193659923	339	PREDICTED: 28S ribosomal protein S22, mi	0.926	0.740	0.492	3e-62
332018418	349	28S ribosomal protein S22, mitochondrial	0.988	0.767	0.466	2e-60
156555282	346	PREDICTED: 28S ribosomal protein S22, mi	0.929	0.728	0.466	2e-58
307177533	358	28S ribosomal protein S22, mitochondrial	0.926	0.701	0.480	2e-58
380020699	352	PREDICTED: LOW QUALITY PROTEIN: 28S ribo	0.981	0.755	0.451	3e-58
328784738	344	PREDICTED: 28S ribosomal protein S22, mi	0.944	0.744	0.439	7e-54
350403402	344	PREDICTED: 28S ribosomal protein S22, mi	0.944	0.744	0.443	1e-53
91083975	344	PREDICTED: similar to AGAP007519-PA [Tri	0.944	0.744	0.424	4e-53
383851429	351	PREDICTED: 28S ribosomal protein S22, mi	0.933	0.720	0.425	2e-52

>gi|239791210|dbj|BAH72103.1| ACYPI001532 [Acyrthosiphon pisum]

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/252 (49%), Positives = 168/252 (66%), Gaps = 1/252 (0%)

Query: 4   KTITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEE 63
           + ITK  S  FF   VQ LL KLT +D+ K FRK+  G+    P YKF+TT EVEK++ E
Sbjct: 39  REITKELSNKFFAEPVQNLLFKLTHVDVQKAFRKRFIGENPDTPIYKFMTTAEVEKMQAE 98

Query: 64  AYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVRE 123
              +A +K+QMPPIVP R D   +VL  +K+++G D  K+VFTDITFG+SD +RI+VVRE
Sbjct: 99  VKLKAKEKVQMPPIVPLRTDLG-QVLEVNKDIIGFDSSKFVFTDITFGVSDKRRIVVVRE 157

Query: 124 PDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYE 183
           PDG LR+AN +ERH +N IYF + G   KHP MF++ NLK L +  +Y FILDRA  Q+E
Sbjct: 158 PDGTLRKANEDERHAVNQIYFPQSGRELKHPVMFDDTNLKPLLENGDYEFILDRACCQFE 217

Query: 184 PDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIED 243
           PDD+ YH ++ +T+ H+ E+  +  L STRH G L+F+LA N   DN LL  L     +D
Sbjct: 218 PDDKNYHRVVFSTYKHVDESKNYHILESTRHLGPLLFYLAFNKKPDNFLLYCLQTERFDD 277

Query: 244 AVWLIKVYQIVN 255
            +  I++Y  +N
Sbjct: 278 IILFIQLYTKLN 289

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193659923|ref|XP_001952240.1| PREDICTED: 28S ribosomal protein S22, mitochondrial-like [Acyrthosiphon pisum]

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/252 (49%), Positives = 168/252 (66%), Gaps = 1/252 (0%)

Query: 4   KTITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEE 63
           + ITK  S  FF   VQ LL KLT +D+ K FRK+  G+    P YKF+TT EVEK++ E
Sbjct: 39  REITKELSNKFFAEPVQNLLFKLTHVDVQKAFRKRFIGENPDTPIYKFMTTAEVEKMQAE 98

Query: 64  AYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVRE 123
              +A +K+QMPPIVP R D   +VL  +K+++G D  K+VFTDITFG+SD +RI+VVRE
Sbjct: 99  VKLKAKEKVQMPPIVPLRTDLG-QVLEVNKDIIGFDSSKFVFTDITFGVSDKRRIVVVRE 157

Query: 124 PDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYE 183
           PDG LR+AN +ERH +N IYF + G   KHP MF++ NLK L +  +Y FILDRA  Q+E
Sbjct: 158 PDGTLRKANEDERHAVNQIYFPQSGRELKHPVMFDDTNLKPLLENGDYEFILDRACCQFE 217

Query: 184 PDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIED 243
           PDD+ YH ++ +T+ H+ E+  +  L STRH G L+F+LA N   DN LL  L     +D
Sbjct: 218 PDDKNYHRVVFSTYKHVDESKNYHILESTRHLGPLLFYLAFNKKPDNFLLYCLQTERFDD 277

Query: 244 AVWLIKVYQIVN 255
            +  I++Y  +N
Sbjct: 278 IILFIQLYTKLN 289

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018418|gb|EGI59012.1| 28S ribosomal protein S22, mitochondrial [Acromyrmex echinatior]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 126/270 (46%), Positives = 170/270 (62%), Gaps = 2/270 (0%)

Query: 1   LSTKTITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKL 60
           + T    +  +  FF  E+QE L  LT +D +KVFR +K G +L+PP++KFLT E++E+ 
Sbjct: 29  VETDPTERDPTPFFFNKEIQECLQTLTTLDYNKVFRTRKDGHKLEPPQFKFLTDEQLEEA 88

Query: 61  KEEAYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIV 120
           ++ A  RA + +QMPP+V  R +   E L  D  L  HD  KYVFTD+T+G+ D +R IV
Sbjct: 89  RKAAECRAKEYLQMPPVVKQRLEPS-EPLCEDPALQNHDTAKYVFTDVTYGLKDKQRSIV 147

Query: 121 VREPDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAAT 180
           VREPDG LR A+  ER RM  I+  +P    + P MFE E LK L +R EY FILDRA T
Sbjct: 148 VREPDGTLRHASWKERDRMIQIFLPKPERELQKPKMFEGEYLKDLLNRNEYEFILDRACT 207

Query: 181 QYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNM 240
           Q+EPDD  Y  +    + HI+  N FD LRSTRHFG +VF L   + IDNLL + +  N 
Sbjct: 208 QFEPDDLDYQAVTQEVYEHINAENHFDVLRSTRHFGPMVFHLVWTSNIDNLLYEMIETNR 267

Query: 241 IEDAVWLIKVYQIVNPESKCATVEHIQGKD 270
           I+DA  LI++Y +V+P +K A VE  +  D
Sbjct: 268 IKDAALLIRLYHMVHPTTKSA-VEQCEHTD 296

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555282|ref|XP_001604948.1| PREDICTED: 28S ribosomal protein S22, mitochondrial-like [Nasonia vitripennis]

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/253 (46%), Positives = 162/253 (64%), Gaps = 1/253 (0%)

Query: 8   KSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNR 67
           K  +  FF  E+Q +L  +TR    KVFR+Q   + L  PEYKF+T +E+E  + +A   
Sbjct: 34  KDPAPYFFNEEIQTILKTVTRPSTEKVFRRQLNSENLVEPEYKFMTDQELEDARRQANQL 93

Query: 68  AIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGL 127
             +++QMPP+V  R++    VLS D  L G    K+V TDITFGIS+  RII VRE DG 
Sbjct: 94  MWERLQMPPVVKVREEDG-RVLSKDPALQGFSDAKFVVTDITFGISNKDRIIAVRELDGT 152

Query: 128 LREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQ 187
           LR+A  +E+ R+N +YF  PG     P MF+EE L+A+ DRK+Y FIL+RA  Q+EPD +
Sbjct: 153 LRKAFNHEKDRLNQVYFPIPGREVFMPKMFQEEYLQAVLDRKDYEFILNRACIQFEPDSE 212

Query: 188 LYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWL 247
            +H +   T+  I++   FDHLRSTRHFG +VF+LA N  IDNLL++N+    IEDA  +
Sbjct: 213 DFHRVTRVTYDCIYDKMHFDHLRSTRHFGPMVFYLAWNKKIDNLLIENIQTERIEDAALV 272

Query: 248 IKVYQIVNPESKC 260
           IK+Y  +NP  K 
Sbjct: 273 IKLYYKLNPSEKA 285

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177533|gb|EFN66644.1| 28S ribosomal protein S22, mitochondrial [Camponotus floridanus]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 121/252 (48%), Positives = 156/252 (61%), Gaps = 1/252 (0%)

Query: 8   KSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNR 67
           ++ +  FF   VQ  L +LT +D +K+FR +K G  LK PEYKFLT EE+++  E A  R
Sbjct: 36  RNPAPYFFNRNVQSYLKRLTTVDYAKIFRTRKDGHRLKAPEYKFLTDEELQEATEAAKRR 95

Query: 68  AIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGL 127
           A K +QMPP+V  R D  + +L  D  L GHD  KYVFTDIT+ ++D +R IVVREP+G 
Sbjct: 96  AHKYLQMPPVVKKRVDPSV-LLCEDPALKGHDTAKYVFTDITYDLNDKERPIVVREPEGT 154

Query: 128 LREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQ 187
           LR A   ER R+  IYF +P    + P MFE E LK L DR EY+FILDRA  Q+EPDD 
Sbjct: 155 LRHATWQERDRIIQIYFPKPAREIEKPKMFEAEYLKDLLDRNEYIFILDRACVQFEPDDP 214

Query: 188 LYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWL 247
            Y  +    + HI+    FD LRSTRHFG +VF LA    IDNLL + +    IE A  L
Sbjct: 215 DYQAVTREVYEHINREKHFDILRSTRHFGPMVFHLAWTRNIDNLLCEMIETGRIEHAAIL 274

Query: 248 IKVYQIVNPESK 259
           I++  ++ P  K
Sbjct: 275 IRLVHLIYPSMK 286

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020699|ref|XP_003694217.1| PREDICTED: LOW QUALITY PROTEIN: 28S ribosomal protein S22, mitochondrial-like [Apis florea]

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 121/268 (45%), Positives = 171/268 (63%), Gaps = 2/268 (0%)

Query: 1   LSTKTITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKL 60
           +S  T  +  + LFF   +QELL  LTRI+  K+F  +K G+ L+ P++KF+T +E+EK 
Sbjct: 27  VSPTTDDRDPAPLFFDQHIQELLFTLTRINYEKIFSTRKDGKPLEIPQFKFMTDKELEKA 86

Query: 61  KEEAYNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIV 120
           + E   +A  ++QMPP+V  R D K E+LS D  L G++   ++FTDI+FG ++ KR+IV
Sbjct: 87  RSEIIIKAKNRIQMPPVVKMRSD-KCEILSKDSALQGYETSNFIFTDISFGSNNRKRLIV 145

Query: 121 VREPDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAAT 180
           VR+ +G LR AN NERHRMN IY    G     P MF    L  L DR+E+ FILDRA  
Sbjct: 146 VRDTNGTLRHANINERHRMNQIYXPIKGREIHTPKMFNNPYLNDLLDREEFEFILDRACL 205

Query: 181 QYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNM 240
           Q+EPDD  YH I    ++++++   FD LRSTRHFG L F+L  NN I  LL+  +    
Sbjct: 206 QFEPDDPEYHRITKEVYSYVNKLKKFDALRSTRHFGPLAFYLVWNNDIHILLMDTIESGN 265

Query: 241 IEDAVWLIKVYQIVNPESKCA-TVEHIQ 267
           IE+A  LI++Y +V PE+K A ++E I+
Sbjct: 266 IEEASALIRLYHLVYPETKSAESIEPIE 293

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784738|ref|XP_001121781.2| PREDICTED: 28S ribosomal protein S22, mitochondrial [Apis mellifera]

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 113/257 (43%), Positives = 162/257 (63%), Gaps = 1/257 (0%)

Query: 5   TITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEA 64
           T  +  + LFF   VQELL  LTRI+  K+F K   G+ LK  +YKF+T +E+++ + + 
Sbjct: 34  TDDRDPAPLFFDQHVQELLFTLTRINYEKIFSKHIDGKPLKNAQYKFMTDKELQEARSQI 93

Query: 65  YNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREP 124
             +A  ++QMPP++  R D K E+LS D  L G +   ++FTDI+FG ++ KR+IVVR+ 
Sbjct: 94  IVKAKNRIQMPPVIKMRVD-KCEILSKDPALQGFETSNFIFTDISFGTNNRKRLIVVRDT 152

Query: 125 DGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEP 184
           +G LR AN +ERHRMN IYF   G     P+MF    L  L DRKE+ F+LDRA  Q+E 
Sbjct: 153 NGTLRHANNDERHRMNQIYFPIEGREIHTPEMFNNPYLSDLLDRKEFEFVLDRACLQFEL 212

Query: 185 DDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDA 244
           DD  YH +    +++I++   FD LRSTRHFG L F+L  N+ I +LL+  +    IE+A
Sbjct: 213 DDPNYHRVTKDVYSYINKFKKFDALRSTRHFGPLAFYLVWNDDIHSLLMDVIESGNIEEA 272

Query: 245 VWLIKVYQIVNPESKCA 261
             LI++Y +V PE + A
Sbjct: 273 GALIRLYHLVYPEIESA 289

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403402|ref|XP_003486793.1| PREDICTED: 28S ribosomal protein S22, mitochondrial-like [Bombus impatiens]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/257 (44%), Positives = 162/257 (63%), Gaps = 1/257 (0%)

Query: 5   TITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEA 64
           T  +  +  FF   VQELL  LTR++  KVF  ++ G  L+ P+Y F+T EE++K + + 
Sbjct: 31  TDERDPAPFFFDRHVQELLTTLTRVNYEKVFAIRRDGTPLEVPQYSFMTDEELQKARAQI 90

Query: 65  YNRAIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREP 124
             +A +++QMPP+V  + D ++EVL  + EL G +    VFTDI+FG ++  R+IV+REP
Sbjct: 91  GAKAKRRIQMPPVVKIKSD-EVEVLVKEPELQGCEQHNLVFTDISFGKNNRSRLIVIREP 149

Query: 125 DGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEP 184
           +G LR+A  NERHRMN IYF   G     P MF    L  L DR E+ FILDRA  Q+EP
Sbjct: 150 NGTLRQATCNERHRMNQIYFPINGREIHTPQMFFHPYLSDLLDRGEFEFILDRACVQFEP 209

Query: 185 DDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDA 244
           DD  YH +    ++++++ N  D LRSTRHFG LVF LA  N ID LLL+ +    IE+A
Sbjct: 210 DDPEYHRVTKEVYSYVYKLNKLDALRSTRHFGPLVFQLAWENNIDKLLLELIDTENIEEA 269

Query: 245 VWLIKVYQIVNPESKCA 261
             L+++Y  ++P+ K A
Sbjct: 270 GALVRLYHALHPDVKSA 286

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083975|ref|XP_975160.1| PREDICTED: similar to AGAP007519-PA [Tribolium castaneum] gi|270007984|gb|EFA04432.1| hypothetical protein TcasGA2_TC014733 [Tribolium castaneum]

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/259 (42%), Positives = 170/259 (65%), Gaps = 3/259 (1%)

Query: 13  LFFKPEVQELLLKLTRIDLSKVFRKQKYG-QELKPPEYKFLTTEEVEKLKEEAYNRAIKK 71
           +F K EVQ LL  LTR+DL+KV+RK+K G ++L+ P YKF+T E++++  +EA  +  + 
Sbjct: 51  IFIKKEVQTLLTTLTRVDLAKVYRKRKLGGRQLEQPVYKFMTDEQLQEALDEAKRKVDEI 110

Query: 72  MQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREA 131
           +Q+PP+V  R   + +V+S D  L G D   Y+FTDI++G+ D++RII+VR+ +G LR+A
Sbjct: 111 LQIPPVVAVRK-PRDKVVSRDPALQGLDSSNYIFTDISYGVPDSERIILVRDTEGTLRDA 169

Query: 132 NTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHN 191
           +   R R+N +YF         P MFE++ L  L  R EY FILDRA  Q+EP+D+ Y  
Sbjct: 170 DWATRDRINQMYFPVARRQVTPPKMFEDDKLDDLLKRGEYNFILDRACLQFEPNDEFYQK 229

Query: 192 ILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVY 251
           + + T+ HI+ENN F+ +RSTRHFG   FF+A + +IDNLLL  +    I++A  L+++Y
Sbjct: 230 VCSVTYQHINENNKFEDIRSTRHFGSFAFFIAWHKMIDNLLLDLIESEHIDEANALVELY 289

Query: 252 QIVNPES-KCATVEHIQGK 269
             ++ E  +  ++E   GK
Sbjct: 290 AQLHGEKFRGNSIEEYIGK 308

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851429|ref|XP_003701235.1| PREDICTED: 28S ribosomal protein S22, mitochondrial-like [Megachile rotundata]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/254 (42%), Positives = 155/254 (61%), Gaps = 1/254 (0%)

Query: 8   KSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNR 67
           +  + +FF   +Q+LL+ LTRID  KVF  +K G     PE +F+T EE++  +     +
Sbjct: 38  RDPAPIFFDERIQDLLVILTRIDYEKVFAPRKEGVRFSTPECRFMTDEELKAAQAAMEKK 97

Query: 68  AIKKMQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGL 127
           A  ++QMPP+V  R D+  +VLS D  + G      VFTDI+FG ++  R+IVVREP G+
Sbjct: 98  ARGRLQMPPVVKPRVDAN-QVLSKDFGIQGFSDTNIVFTDISFGGTNRHRLIVVREPSGI 156

Query: 128 LREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQ 187
           LR ANT ERHRMN +YF         P MF +   K L +R+E+VFILDRA  Q+EPDD 
Sbjct: 157 LRHANTKERHRMNQVYFPIKDREIHTPKMFSDPYFKDLLEREEFVFILDRACLQFEPDDS 216

Query: 188 LYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWL 247
            Y  I  T ++ +++   FD LRSTRHFG + F+L     ID+LL   +    IE+A  L
Sbjct: 217 DYQKITQTVYSTVNQWKKFDALRSTRHFGPMAFYLTWEKKIDDLLQDVIKNEKIEEAAAL 276

Query: 248 IKVYQIVNPESKCA 261
           I++Y +V+P+++  
Sbjct: 277 IRLYHLVHPDARSG 290

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
UNIPROTKB|F1SL55	360	MRPS22 "Uncharacterized protei	0.937	0.705	0.357	4.8e-39
ZFIN|ZDB-GENE-070615-31	340	mrps22 "mitochondrial ribosoma	0.926	0.738	0.367	7.8e-39
UNIPROTKB|G3N3U9	359	MRPS22 "28S ribosomal protein	0.904	0.682	0.354	7e-38
UNIPROTKB|P82649	359	MRPS22 "28S ribosomal protein	0.904	0.682	0.354	1.5e-37
UNIPROTKB|F1NXX2	293	MRPS22 "Uncharacterized protei	0.929	0.860	0.351	6.3e-37
UNIPROTKB|G5E9V5	359	MRPS22 "Mitochondrial ribosoma	0.904	0.682	0.350	6.3e-37
UNIPROTKB|G5E9W7	319	MRPS22 "28S ribosomal protein	0.904	0.768	0.350	6.3e-37
UNIPROTKB|P82650	360	MRPS22 "28S ribosomal protein	0.904	0.680	0.350	6.3e-37
MGI|MGI:1928137	359	Mrps22 "mitochondrial ribosoma	0.904	0.682	0.342	3.5e-36
WB|WBGene00007564	418	mrps-22 [Caenorhabditis elegan	0.896	0.581	0.337	9.5e-34

UNIPROTKB|F1SL55 MRPS22 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 92/257 (35%), Positives = 139/257 (54%)

Query:    14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFXXXXXXXXXXXXAYNRAIKKMQ 73
             F   EVQ +L+K+T +DL K+F+     QELKPP YK             A   A  +++
Sbjct:    69 FMDEEVQNILIKMTGLDLQKIFKPAL--QELKPPTYKLMTQAQLEEATKQAVEAAKVRLK 126

Query:    74 MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
             MPP++  R     +VL+ DK L G +  KYVFTDI++ I   +R IVVREP G LR+A+ 
Sbjct:   127 MPPVLEERAPIN-DVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTLRKASW 185

Query:   134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
              ER RM  +YF R G     P +F+EENL+ +  + ++V +L+    Q+EPD   Y  I 
Sbjct:   186 EERDRMIQVYFPREGRRILTPVIFKEENLQTMYSQDQHVDVLNLCVAQFEPDSAEYIKIH 245

Query:   194 NTTFTHIHENNGFDHLRSTRHFGCLVFFXXXXXXXXXXXXXXXHCNMIEDAVWLIKVYQI 253
             + T+  I +   +D LRSTRHFG + ++                 +++ DA  L+ +Y I
Sbjct:   246 HHTYEDIDKCGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVSDATSLVHLYHI 305

Query:   254 VNPESKCATVEHIQGKD 270
             ++P+ + A     QG +
Sbjct:   306 LHPDGQSAQEAKKQGAE 322

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-070615-31 mrps22 "mitochondrial ribosomal protein S22" [Danio rerio (taxid:7955)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 94/256 (36%), Positives = 142/256 (55%)

Query:    12 ALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFXXXXXXXXXXXXAYNRAIKK 71
             A F   EVQ++L K+T + L KVFR     Q+L PP+YK             A   A   
Sbjct:    50 AQFTDKEVQDILTKITGLKLDKVFRP--IIQQLTPPKYKLLTDTELEEAVHKAEEHAKHL 107

Query:    72 MQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREA 131
             ++MPPI+P R     +VL+ D+ L G D  KYVFTDI F I   +R IVVREP G LR+A
Sbjct:   108 LEMPPILPERKPID-DVLAEDRILEGMDTAKYVFTDINFNIPHRERFIVVREPSGTLRKA 166

Query:   132 NTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHN 191
             + NER R+  IYF + G     P +F+EENL+ + ++  +  +L++   Q+EPD   ++ 
Sbjct:   167 SWNERDRIIQIYFPKEGRKVTPPPVFKEENLRLVFEQDRHEDVLNQCVVQFEPDSAEFNK 226

Query:   192 ILNTTFTHIHENNGFDHLRSTRHFGCLVFFXXXXXXXXXXXXXXXHCNMIEDAVWLIKVY 251
             +   T+  I ++  +D LRSTR FG L +                  ++++DAV L++++
Sbjct:   227 VFMLTYEDIDKHGKYDLLRSTRFFGGLAWHMVNERRIDGLLVEMLQRDLMQDAVKLVRLF 286

Query:   252 QIVNPESKCATVEHIQ 267
              +V+P+S+ A  EH Q
Sbjct:   287 NLVHPQSESA--EHAQ 300

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G3N3U9 MRPS22 "28S ribosomal protein S22, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 88/248 (35%), Positives = 135/248 (54%)

Query:    14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFXXXXXXXXXXXXAYNRAIKKMQ 73
             F   EVQ +L+K+T +DL K+F+     QE KPP YK             A   A  +++
Sbjct:    69 FMDEEVQSILIKMTGLDLLKIFKPAV--QETKPPTYKLMTQAQLEEATRQAIEAAKVRLK 126

Query:    74 MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
             MPP++  R     +VL+ DK L G +  KYVFTDI++ I   +R IVVREP G LR+A+ 
Sbjct:   127 MPPVLEERTPIN-DVLAEDKILEGTETAKYVFTDISYSIPHRERFIVVREPSGTLRKASW 185

Query:   134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
              ER RM  IYF + G     P +F EENL+ +  +  +V +L+    Q+EPD   Y  + 
Sbjct:   186 EERDRMIQIYFPKEGRRVLTPVIFREENLQTMYSQDRHVDVLNLCVAQFEPDSADYIKVH 245

Query:   194 NTTFTHIHENNGFDHLRSTRHFGCLVFFXXXXXXXXXXXXXXXHCNMIEDAVWLIKVYQI 253
             + T+  I +   +D LRSTRHFG + ++                 ++++DA  L+++Y I
Sbjct:   246 HQTYEDIDKYGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDAASLVQLYHI 305

Query:   254 VNPESKCA 261
             ++P+ + A
Sbjct:   306 LHPDGQSA 313

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P82649 MRPS22 "28S ribosomal protein S22, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 88/248 (35%), Positives = 135/248 (54%)

Query:    14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFXXXXXXXXXXXXAYNRAIKKMQ 73
             F   EVQ +L+K+T +DL K+F+     QE KPP YK             A   A  +++
Sbjct:    69 FMDEEVQSILIKMTGLDLLKIFKPAV--QETKPPTYKLMTQAQLEEATRQAIEAAKVRLK 126

Query:    74 MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
             MPP++  R     +VL+ DK L G +  KYVFTDI++ I   +R IVVREP G LR+A+ 
Sbjct:   127 MPPVLEERTPIN-DVLAEDKILEGTETGKYVFTDISYSIPHRERFIVVREPSGTLRKASW 185

Query:   134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
              ER RM  IYF + G     P +F EENL+ +  +  +V +L+    Q+EPD   Y  + 
Sbjct:   186 EERDRMIQIYFPKEGRRVLTPVIFREENLQTMYSQDRHVDVLNLCVAQFEPDSADYIKVH 245

Query:   194 NTTFTHIHENNGFDHLRSTRHFGCLVFFXXXXXXXXXXXXXXXHCNMIEDAVWLIKVYQI 253
             + T+  I +   +D LRSTRHFG + ++                 ++++DA  L+++Y I
Sbjct:   246 HQTYEDIDKYGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDAASLVQLYHI 305

Query:   254 VNPESKCA 261
             ++P+ + A
Sbjct:   306 LHPDGQSA 313

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1NXX2 MRPS22 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 90/256 (35%), Positives = 144/256 (56%)

Query:    14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFXXXXXXXXXXXXAYNRAIKKMQ 73
             F    VQ+LL ++T ++L KVFR  +  QELKPP+Y+             A   A +K++
Sbjct:     4 FTDEAVQDLLYRMTGLNLQKVFRPVR--QELKPPKYQLLTEAQLQEATRKAVVEAKEKLR 61

Query:    74 MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
             MPP++  R+    +VL++DK L G +  KYVFTD+T+     +R IVVREP+G+LR+A  
Sbjct:    62 MPPVLDEREPID-DVLADDKVLEGTETAKYVFTDLTYATPHRERFIVVREPNGVLRKATW 120

Query:   134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
              ER RM  I+F + G     P +F++E+L  +  +  +  IL+    Q+EPD   Y  + 
Sbjct:   121 EERDRMIQIFFPKEGRRVIPPVLFKDEHLGTVFQQDRHEDILNMCIAQFEPDSADYIRVH 180

Query:   194 NTTFTHIHENNGFDHLRSTRHFGCLVFFXXXXXXXXXXXXXXXHCNMIEDAVWLIKVYQI 253
             + T+  I ++  +D LRSTRHFG +V++                 ++++DA  LI +Y +
Sbjct:   181 HRTYDDIEKHAKYDLLRSTRHFGGMVWYLVNRKRTDGLLIDMISRDLLDDATCLITLYHM 240

Query:   254 VNPESKCATVEHIQGK 269
             ++PE + A  E  +GK
Sbjct:   241 LHPECQSAK-EAEEGK 255

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

UNIPROTKB|G5E9V5 MRPS22 "Mitochondrial ribosomal protein S22, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 87/248 (35%), Positives = 136/248 (54%)

Query:    14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFXXXXXXXXXXXXAYNRAIKKMQ 73
             F   EVQ +L K+T ++L K F+     QELKPP YK             A   A  +++
Sbjct:    69 FMDEEVQSILTKMTGLNLQKTFKPAI--QELKPPTYKLMTQAQLEEATRQAVEAAKVRLK 126

Query:    74 MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
             MPP++  R     +VL+ DK L G +  KYVFTDI++ I   +R IVVREP G LR+A+ 
Sbjct:   127 MPPVLEERVPIN-DVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRKASW 185

Query:   134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
              ER RM  +YF + G     P +F+EENL+ +  +  +V +L+    Q+EPD   Y  + 
Sbjct:   186 EERDRMIQVYFPKEGRKILTPIIFKEENLRTMYSQDRHVDVLNLCFAQFEPDSTEYIKVH 245

Query:   194 NTTFTHIHENNGFDHLRSTRHFGCLVFFXXXXXXXXXXXXXXXHCNMIEDAVWLIKVYQI 253
             + T+  I +   +D LRSTR+FG +V++                 ++I+DA  L+++Y +
Sbjct:   246 HKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDATNLVQLYHV 305

Query:   254 VNPESKCA 261
             ++P+ + A
Sbjct:   306 LHPDGQSA 313

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|G5E9W7 MRPS22 "28S ribosomal protein S22, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 87/248 (35%), Positives = 136/248 (54%)

Query:    14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFXXXXXXXXXXXXAYNRAIKKMQ 73
             F   EVQ +L K+T ++L K F+     QELKPP YK             A   A  +++
Sbjct:    29 FMDEEVQSILTKMTGLNLQKTFKPAI--QELKPPTYKLMTQAQLEEATRQAVEAAKVRLK 86

Query:    74 MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
             MPP++  R     +VL+ DK L G +  KYVFTDI++ I   +R IVVREP G LR+A+ 
Sbjct:    87 MPPVLEERVPIN-DVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRKASW 145

Query:   134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
              ER RM  +YF + G     P +F+EENL+ +  +  +V +L+    Q+EPD   Y  + 
Sbjct:   146 EERDRMIQVYFPKEGRKILTPIIFKEENLRTMYSQDRHVDVLNLCFAQFEPDSTEYIKVH 205

Query:   194 NTTFTHIHENNGFDHLRSTRHFGCLVFFXXXXXXXXXXXXXXXHCNMIEDAVWLIKVYQI 253
             + T+  I +   +D LRSTR+FG +V++                 ++I+DA  L+++Y +
Sbjct:   206 HKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDATNLVQLYHV 265

Query:   254 VNPESKCA 261
             ++P+ + A
Sbjct:   266 LHPDGQSA 273

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P82650 MRPS22 "28S ribosomal protein S22, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 87/248 (35%), Positives = 136/248 (54%)

Query:    14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFXXXXXXXXXXXXAYNRAIKKMQ 73
             F   EVQ +L K+T ++L K F+     QELKPP YK             A   A  +++
Sbjct:    70 FMDEEVQSILTKMTGLNLQKTFKPAI--QELKPPTYKLMTQAQLEEATRQAVEAAKVRLK 127

Query:    74 MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
             MPP++  R     +VL+ DK L G +  KYVFTDI++ I   +R IVVREP G LR+A+ 
Sbjct:   128 MPPVLEERVPIN-DVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRKASW 186

Query:   134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
              ER RM  +YF + G     P +F+EENL+ +  +  +V +L+    Q+EPD   Y  + 
Sbjct:   187 EERDRMIQVYFPKEGRKILTPIIFKEENLRTMYSQDRHVDVLNLCFAQFEPDSTEYIKVH 246

Query:   194 NTTFTHIHENNGFDHLRSTRHFGCLVFFXXXXXXXXXXXXXXXHCNMIEDAVWLIKVYQI 253
             + T+  I +   +D LRSTR+FG +V++                 ++I+DA  L+++Y +
Sbjct:   247 HKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDATNLVQLYHV 306

Query:   254 VNPESKCA 261
             ++P+ + A
Sbjct:   307 LHPDGQSA 314

GO:0005761 "mitochondrial ribosome" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1928137 Mrps22 "mitochondrial ribosomal protein S22" [Mus musculus (taxid:10090)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 85/248 (34%), Positives = 133/248 (53%)

Query:    14 FFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFXXXXXXXXXXXXAYNRAIKKMQ 73
             F   EVQ +L K+T +DL K FR     Q LKPP YK             A   A  +++
Sbjct:    69 FMDEEVQRILTKITGLDLQKTFRPAI--QPLKPPTYKLMTQAQLEEATRLAVEAAKVRLK 126

Query:    74 MPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANT 133
             MPP++  R     +VL+ DK L G +  KYVFTDI++ I   +R IVVREP G LR+A+ 
Sbjct:   127 MPPVLEERKPIN-DVLAEDKILEGTETNKYVFTDISYNIPHRERFIVVREPSGTLRKASW 185

Query:   134 NERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNIL 193
              ER R+  IYF + G     P +F++ENLK +  +  +  +L+    Q+EPD   Y  + 
Sbjct:   186 EERDRVIQIYFPKEGRRVLPPVIFKDENLKTMYSQDRHADVLNLCVAQFEPDSAEYIKVH 245

Query:   194 NTTFTHIHENNGFDHLRSTRHFGCLVFFXXXXXXXXXXXXXXXHCNMIEDAVWLIKVYQI 253
             + T+  I  +  ++ LRSTRHFG + ++                 ++++DA  L+++Y +
Sbjct:   246 HQTYEDIDRHGKYELLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDATSLVQLYHM 305

Query:   254 VNPESKCA 261
             ++P+ + A
Sbjct:   306 LHPDGQSA 313

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

WB|WBGene00007564 mrps-22 [Caenorhabditis elegans (taxid:6239)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 83/246 (33%), Positives = 123/246 (50%)

Query:    13 LFFKPEVQELLLKLTRIDLS-KVFRKQKYGQELKPPEYKFXXXXXXXXXXXXAYNRAIKK 71
             LF + EVQ+LL  LT IDL  KVFR ++   + +   +                  A + 
Sbjct:    41 LFVEKEVQKLLTDLTEIDLEHKVFRPRRTSIQQRS-HFALMTEERLEKTRERMREEARRF 99

Query:    72 MQMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREA 131
             +Q  P+   R++S +++L+ D EL   D  K+VFTDITF  +D  R +VVREPDG LR A
Sbjct:   100 LQFVPVKEPREES-VQILAKDLELKDFDTSKFVFTDITFDATDQDRTVVVREPDGTLRTA 158

Query:   132 NTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHN 191
             N  E  RMN  Y+ +P  +   P +F + NL+   D+ ++ F+LD A   YEPDD  Y  
Sbjct:   159 NPEEHDRMNRTYYQKPNRSVNPPPLFSDPNLQNALDKNDHEFVLDWACWFYEPDDPAYVR 218

Query:   192 ILNTTFTHIHENNGFDHLRSTRHFGCLVFFXXXXXXXXXXXXXXXHCNMIEDAVWLIKVY 251
             +    F  I+E+  F  + STRHFG   F+                   + D   L+++ 
Sbjct:   219 LSQLVFDRINESGKFHVVTSTRHFGPFTFYLALNDNIQKLLNYFGGLGRLSDCANLVRLQ 278

Query:   252 QIVNPE 257
             + V P+
Sbjct:   279 KAVRPD 284

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82650	RT22_HUMAN	No assigned EC number	0.3849	0.8892	0.6694	yes	N/A
Q9CXW2	RT22_MOUSE	No assigned EC number	0.3709	0.9040	0.6824	yes	N/A
P82649	RT22_BOVIN	No assigned EC number	0.3830	0.9040	0.6824	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	271
pfam10245	243	pfam10245, MRP-S22, Mitochondrial 28S ribosomal pr	5e-85

>gnl|CDD|150854 pfam10245, MRP-S22, Mitochondrial 28S ribosomal protein S22

 Score =  253 bits (649), Expect = 5e-85
 Identities = 116/244 (47%), Positives = 160/244 (65%), Gaps = 3/244 (1%)

Query: 13  LFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKM 72
           LF   EVQ+LL  +TR+DL KVFRK+         EYK +T E++E+ K ++   A + +
Sbjct: 3   LFVDEEVQKLLTSMTRLDLDKVFRKRS--VRDNRSEYKLMTDEQLEREKLQSIEFAKQML 60

Query: 73  QMPPIVPARDDSKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREAN 132
           QMPP+V  R +S  +VL+ D  L G    KYVFTDITFG+  ++R IVVREPDG LREAN
Sbjct: 61  QMPPVVEPRQES-NDVLAKDLALKGFSTSKYVFTDITFGLPHSERTIVVREPDGTLREAN 119

Query: 133 TNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKEYVFILDRAATQYEPDDQLYHNI 192
             ER RMN IYF   G     P MFE+ENLK L ++ +Y F+LDRA  Q+EPD+  YH +
Sbjct: 120 YEERDRMNQIYFPLEGRKVFPPPMFEDENLKKLLEQGKYEFVLDRACVQFEPDEPEYHRL 179

Query: 193 LNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKVYQ 252
               + HI+E+  FD LRSTRHFG + F+LA + +ID+LL   +  + +++AV LI++  
Sbjct: 180 SARVYEHINESGKFDKLRSTRHFGPMAFYLAWHKLIDDLLYDMIKRDYLDNAVELIRLTC 239

Query: 253 IVNP 256
           I++P
Sbjct: 240 ILHP 243

This is the conserved N-terminus and central portion of the mitochondrial small subunit 28S ribosomal protein S22. Mammalian mitochondria carry out the synthesis of 13 polypeptides that are essential for oxidative phosphorylation and, hence, for the synthesis of the majority of the ATP used by eukaryotic organisms. The number of proteins produced by prokaryotes is smaller, reflected in the lower number of ribosomal proteins present in them. Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
PF10245	243	MRP-S22: Mitochondrial 28S ribosomal protein S22;	100.0
KOG3890|consensus	391		100.0

>PF10245 MRP-S22: Mitochondrial 28S ribosomal protein S22; InterPro: IPR019374 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.4e-124  Score=847.37  Aligned_cols=243  Identities=50%  Similarity=0.820  Sum_probs=241.0

Q ss_pred             CCCCCcHHHHHHHHHhhCCCchhhccccccCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcCCCCcccccCCccccccc
Q psy1555          11 SALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDDSKLEVLS   90 (271)
Q Consensus        11 ~p~F~~~~VQ~LL~~lTgldl~KVFr~r~~g~~~~~p~yklMTdeql~~~~~~~~~~A~~~LqMPPVl~~R~~~~~~Vls   90 (271)
                      +|+|+|++||+||++|||+||+||||+| + +++++|+|||||||||++++++|+++|+++|||||||++|+| +++|||
T Consensus         1 ~p~F~~~~VQ~lL~~lT~~dl~KVFr~r-~-~~~~~p~yklMTdeql~~~~~~~~~~a~~~LqMPPVl~~r~~-~~~Vls   77 (243)
T PF10245_consen    1 QPLFTDEEVQNLLKKLTGLDLDKVFRPR-K-QELKPPTYKLMTDEQLEEALEKAIEKAKKLLQMPPVLEEREP-IDEVLS   77 (243)
T ss_pred             CCCCccHHHHHHHHHHhCcCHHHhcccc-c-cCCCCCeeEeCCHHHHHHHHHHHHHHHHHhcCCCCCCCcccC-cccccc
Confidence            6999999999999999999999999999 4 688999999999999999999999999999999999999999 999999


Q ss_pred             cCccccCCCccceEEEeccCCCCCCeeeEEEECCCCccccCChhHhhhhhhhccCCCCCccCCCCCCChhhHHHHHcchh
Q psy1555          91 NDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLKALCDRKE  170 (271)
Q Consensus        91 ~D~~L~g~d~sk~VFTDIs~g~~~~eR~IVVREpdGtLR~A~~eERdRmnQiYFP~~gR~v~~P~mF~~e~L~~~l~~~~  170 (271)
                      +||+|+|||+|||||||||||++|++|+|||||||||||+|||||||||||||||++||++++|+||+++||+++|++|+
T Consensus        78 ~D~~l~g~d~sk~VFTDIs~g~~~~eR~IVVREpdGtLR~At~eERdRm~QiYfP~~gR~v~~P~mF~~e~L~~~l~~~~  157 (243)
T PF10245_consen   78 EDPALKGFDTSKYVFTDISYGIPHRERFIVVREPDGTLRKATWEERDRMNQIYFPKEGRKVRPPPMFEDENLQNLLDRDR  157 (243)
T ss_pred             cCccccCCCcceEEEEecccCCCCccceEEEECCCCCcccCCHHHHHhHHhhccCCCCCccCCCCccCcHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhcCCCchhhhHHHHHHhhhhhhhcCccccccCCCchhHHHHHHHcCChhHHHHHHHhhchHHhHHHHHHH
Q psy1555         171 YVFILDRAATQYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIEDAVWLIKV  250 (271)
Q Consensus       171 ~e~iLD~ac~QfEPdd~~Y~rv~~~vYe~i~~~~~fd~LrSTRHFG~mafyL~~~~~id~LL~d~i~~~~l~dA~~Li~L  250 (271)
                      |||||||||+|||||||+||+||++||+|||++|+||+||||||||||||||||+++|||||++||++++|+||++||+|
T Consensus       158 ~e~iLD~ac~QfEPdd~~y~rv~~~vYe~i~~~~~yd~LrSTRHfG~m~fyL~~~~~id~LL~dmi~~~~l~dA~~Li~L  237 (243)
T PF10245_consen  158 HEFILDRACVQFEPDDPDYIRVHHRVYEHINEHKKYDLLRSTRHFGPMAFYLVWNKKIDGLLYDMIQRDRLDDAVNLIRL  237 (243)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccHHHhccCccchhHHHHHHccCcHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcC
Q psy1555         251 YQIVNP  256 (271)
Q Consensus       251 ~~~lhp  256 (271)
                      ||+|||
T Consensus       238 ~~~lhP  243 (243)
T PF10245_consen  238 YHMLHP  243 (243)
T ss_pred             hhhcCC
Confidence            999999

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is the conserved N terminus and central portion of the mitochondrial small subunit 28S ribosomal protein S22. Mammalian mitochondria carry out the synthesis of 13 polypeptides that are essential for oxidative phosphorylation and, hence, for the synthesis of the majority of the ATP used by eukaryotic organisms. The number of proteins produced by prokaryotes is smaller, reflected in the lower number of ribosomal proteins present in them [].

>KOG3890|consensus

Probab=100.00  E-value=1.4e-115  Score=813.20  Aligned_cols=258  Identities=41%  Similarity=0.625  Sum_probs=253.6

Q ss_pred             cccCCCCCCCCCcHHHHHHHHHhhCCCchhhccccccCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcCCCCcccccCC
Q psy1555           4 KTITKSTSALFFKPEVQELLLKLTRIDLSKVFRKQKYGQELKPPEYKFLTTEEVEKLKEEAYNRAIKKMQMPPIVPARDD   83 (271)
Q Consensus         4 ~~~~~d~~p~F~~~~VQ~LL~~lTgldl~KVFr~r~~g~~~~~p~yklMTdeql~~~~~~~~~~A~~~LqMPPVl~~R~~   83 (271)
                      -+|+.||+|+|+|+|||+||++|||+||+|||||| + +++++|+|||||.|||+++.+++.++|+++||||||+++|+|
T Consensus        32 ~~~~~~~~plF~d~EvQ~lLt~mT~lnL~Kvfrpr-~-~~~~~~~~klMt~eqLe~~~~~~ve~A~~~LqmpPV~e~r~~  109 (391)
T KOG3890|consen   32 LQYERDPQPLFTDAEVQRLLTSMTQLNLDKVFRPR-T-VPDNSSETKLMTNEQLENEFQNLVERAQQILQMPPVVEIRKD  109 (391)
T ss_pred             cCCCCCccccchHHHHHHHHHHhhhccHHhhcccc-c-ccCCCchhhhhhHHHHHHHHHHHHHHHHHHhcCCCcccccch
Confidence            47899999999999999999999999999999999 6 799999999999999999999999999999999999999999


Q ss_pred             ccccccccCccccCCCccceEEEeccCCCCCCeeeEEEECCCCccccCChhHhhhhhhhccCCCCCccCCCCCCChhhHH
Q psy1555          84 SKLEVLSNDKELLGHDVCKYVFTDITFGISDAKRIIVVREPDGLLREANTNERHRMNNIYFSRPGATYKHPDMFEEENLK  163 (271)
Q Consensus        84 ~~~~Vls~D~~L~g~d~sk~VFTDIs~g~~~~eR~IVVREpdGtLR~A~~eERdRmnQiYFP~~gR~v~~P~mF~~e~L~  163 (271)
                       +++|||+|.+|+||+||||||||||||+++++|+|||||||||||+|||||+|||||+|||++||++++|+||.||||+
T Consensus       110 -v~~vlAkD~~Lkdf~tsKfVFTDItf~~~~~eR~VVVRepdGTLr~A~~ee~dRMnq~YfpkegR~~~tP~~F~eenL~  188 (391)
T KOG3890|consen  110 -VERVLAKDTALKDFATSKFVFTDITFGRRQSERKVVVREPDGTLRYATLEETDRMNQLYFPKEGRQSYTPRMFAEENLA  188 (391)
T ss_pred             -HHHHHhhhhhhccccccceEEEeecccCccccceEEEECCCCccccCCHHHhhhhhhhcccCCCCccCCCccccchHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcchhhHHHHHHHHhhcCCCchhhhHHHHHHhhhhhhhcCccccccCCCchhHHHHHHHcCChhHHHHHHHhhchHHh
Q psy1555         164 ALCDRKEYVFILDRAATQYEPDDQLYHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANNNIIDNLLLQNLHCNMIED  243 (271)
Q Consensus       164 ~~l~~~~~e~iLD~ac~QfEPdd~~Y~rv~~~vYe~i~~~~~fd~LrSTRHFG~mafyL~~~~~id~LL~d~i~~~~l~d  243 (271)
                      +||++++|||||||||||||||||+||+|+++||||||++|+||+||||||||||+||+|||+|||+||+|||++|+|+|
T Consensus       189 ~~l~~~~hefVLd~~~~qyEPd~pey~~is~~vfe~inesgkfdllrSTRhFGpm~fy~a~n~~Id~LL~d~i~rd~l~d  268 (391)
T KOG3890|consen  189 KCLAEHKHEFVLDRLLVQYEPDEPEYHNISARVFEHINESGKFDLLRSTRHFGPMAFYYAWNRCIDDLLYDMIRRDYLHD  268 (391)
T ss_pred             HHHhhcchHHHHHHHHHhcCCCChHHhhhHHHHHHhhccccceeeEeeccccCceeeeeehhhhHHHHHHHHhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCch--hhHh
Q psy1555         244 AVWLIKVYQIVNPESKC--ATVE  264 (271)
Q Consensus       244 A~~Li~L~~~lhp~~~~--a~~~  264 (271)
                      |++||+|||.+||++.+  |+-+
T Consensus       269 a~nLV~L~~~lhpd~~~~~Aqg~  291 (391)
T KOG3890|consen  269 AVNLVALSYKLHPDPVEYQAQGT  291 (391)
T ss_pred             HHHHHHHHHHhCCcchhhhhccc
Confidence            99999999999999998  5444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 38/284 (13%), Positives = 75/284 (26%), Gaps = 88/284 (30%)

Query: 1   LSTKTITKSTSALFFKPEVQELLLKLTRID-LSKVF----RKQKYG-----QELKPPEYK 50
              K +     ++  K E+  +++    +    ++F     KQ+       +E+    YK
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 51  FLT----TEEVEK-LKEEAYNRAIKKMQ--MPPIVP---ARDDSKLEV---LSND----- 92
           FL     TE+ +  +    Y     ++            +R    L++   L        
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 93  ----------KELLGHDVCK-YVFTD--------ITFGISDAKRIIVVREPDGLLREANT 133
                     K  +  DVC  Y            +               P+ +L     
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK--------NCNSPETVLEMLQ- 203

Query: 134 NERHRMNNIYFSRPGATYKHPDMFEE--ENLKALCDRKEYV---FILDRAATQYEPDDQL 188
              ++++  + SR   +             L+ L   K Y     +L             
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL------------ 251

Query: 189 YHNILNTTFTHIHENNGFDHLRSTRHFGCLVFFLANN-NIIDNL 231
             N+ N         N F+         C +        + D L
Sbjct: 252 --NVQNA--KAW---NAFN-------LSCKILLTTRFKQVTDFL 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00