Psyllid ID: psy15588

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MDFVRDATYHIVVLKLCSAKSFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLMHHVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLGRPLARQRFVVPQEGGTYLLF
ccEEEEEccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHccccccccccccccEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
ccEEEEEEEEcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHcHccccccccccccccEEEEEEEEcccEEEEccccccHHcEEEEccEEEEEcccccccccccHHHcccccccccHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHcEEEEEccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccEEEcc
MDFVRDATYHIVVLKLCsaksfqctfhmdssnhdkdfILSCKRSVVQFVFRWVSVIRHVvfddtgtmNFIQDLAsevesdstmwSGLTEEASLMHHVMTHMKRYQDERaasagqkwklppsgqpiiIFRVYCadhtfctlrfpvnatAEQIKTSAAEKLAEQIKTSAAEKlgllvspsdlLLVEVKStgervvfrdndlsiptalslngrifvspkdhldaltciseqetytegmdfdletFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLtwdklpskskkTYTELEALIDPSKNHRAYRQAVSklqspvipfmpLLLKDLafthdgnktVVDGLVNFEKMHMFAQTLRTLRYCRtrhlgrplarqrfvvpqeggtyllf
MDFVRDATYHIVVLKLCSAKSFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLMHHVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAeklgllvspsdLLLVEVKStgervvfrdndlsiptalslngrifvSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSltwdklpskskKTYTELEAlidpsknhRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHlgrplarqrfvvpqeggtyllf
MDFVRDATYHIVVLKLCSAKSFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLMHHVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKlgllvspsdlllvEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLGRPLARQRFVVPQEGGTYLLF
***VRDATYHIVVLKLCSAKSFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEV*****MWSGLT****LMHHVM**********************SGQPIIIFRVYCADHTFCTLRFPVNATAEQIKT*********IKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLP******YTELEALI*******AYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLGRPLARQRFVVPQEGGTY***
MDFVRDATYHIVVLKLCSAKS******************SCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASL******************************PIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAE*L**LVSPSDL**********************************************************LETFSAKELAFHMTLFDWDLFWSIHEYELVYHTV**********NLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHL*****************YLLF
MDFVRDATYHIVVLKLCSAKSFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLMHHVMTHMKRYQ**********WKLPPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLGRPLARQRFVVPQEGGTYLLF
MDFVRDATYHIVVLKLCSAKSFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLMHHVMTHMKRYQ*******G*KWKLPPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLGRP*A*****V*Q*****L**
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MDFVRDATYHIVVLKLCSAKSFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLMHHVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLGRPLARQRFVVPQEGGTYLLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query461 2.2.26 [Sep-21-2011]
Q8WZA21011 Rap guanine nucleotide ex no N/A 0.830 0.378 0.461 1e-111
Q9EQZ61011 Rap guanine nucleotide ex no N/A 0.830 0.378 0.461 1e-110
Q9Z1C7436 Rap guanine nucleotide ex no N/A 0.811 0.857 0.450 1e-105
Q8C0Q9814 Rap guanine nucleotide ex no N/A 0.882 0.5 0.383 2e-79
P83900580 Rap guanine nucleotide ex no N/A 0.891 0.708 0.38 2e-79
Q92565580 Rap guanine nucleotide ex no N/A 0.835 0.663 0.387 2e-77
Q9Z1C8926 Rap guanine nucleotide ex no N/A 0.859 0.427 0.381 4e-74
Q9UHV5662 Rap guanine nucleotide ex no N/A 0.852 0.593 0.346 4e-72
Q5R9B2456 Rap guanine nucleotide ex N/A N/A 0.852 0.861 0.346 5e-72
P345781038 Rap guanine nucleotide ex no N/A 0.854 0.379 0.392 2e-71
>sp|Q8WZA2|RPGF4_HUMAN Rap guanine nucleotide exchange factor 4 OS=Homo sapiens GN=RAPGEF4 PE=1 SV=1 Back     alignment and function desciption
 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/420 (46%), Positives = 280/420 (66%), Gaps = 37/420 (8%)

Query: 36  DFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLM- 94
           D+ L+ KR V++ V +W ++   ++ +D  +M F+++    V  D+ M + L E+   + 
Sbjct: 568 DYALNNKRRVIRLVLQWAAMYGDLLQEDDVSMAFLEEFYVSVSDDARMIAALKEQLPELE 627

Query: 95  ----------------HHVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFC 138
                           H V+       DERA       + P  G   ++F+VYC DHT+ 
Sbjct: 628 KIVKQISEDAKAPQKKHKVLLQQFNTGDERAQK-----RQPIRGSDEVLFKVYCMDHTYT 682

Query: 139 TLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDND 198
           T+R PV  + +++ ++ A+KL                S   L++V++ S GE+VV + ND
Sbjct: 683 TIRVPVATSVKEVISAVADKLG---------------SGEGLIIVKMSSGGEKVVLKPND 727

Query: 199 LSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDL 258
           +S+ T L++NGR+F  P++  D+LT + EQE  T G     E  S+K+LA+ MT++DW+L
Sbjct: 728 VSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTVGTVGTFELMSSKDLAYQMTIYDWEL 787

Query: 259 FWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKM 318
           F  +HE EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K 
Sbjct: 788 FNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKF 847

Query: 319 IKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHR 378
           IK+AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHR
Sbjct: 848 IKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHR 907

Query: 379 AYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTR 438
           AYR  V+KL+ P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++
Sbjct: 908 AYRLTVAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQ 967
Guanine nucleotide exchange factor (GEF) for RAP1A, RAP1B and RAP2A small GTPases that is activated by binding cAMP. Seems not to activate RAB3A. Involved in cAMP-dependent, PKA-independent exocytosis through interaction with RIMS2.
Homo sapiens (taxid: 9606)
>sp|Q9EQZ6|RPGF4_MOUSE Rap guanine nucleotide exchange factor 4 OS=Mus musculus GN=Rapgef4 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z1C7|RPGF4_RAT Rap guanine nucleotide exchange factor 4 (Fragment) OS=Rattus norvegicus GN=Rapgef4 PE=2 SV=1 Back     alignment and function description
>sp|Q8C0Q9|RPGF5_MOUSE Rap guanine nucleotide exchange factor 5 OS=Mus musculus GN=Rapgef5 PE=2 SV=2 Back     alignment and function description
>sp|P83900|RPGF5_RAT Rap guanine nucleotide exchange factor 5 OS=Rattus norvegicus GN=Rapgef5 PE=2 SV=1 Back     alignment and function description
>sp|Q92565|RPGF5_HUMAN Rap guanine nucleotide exchange factor 5 OS=Homo sapiens GN=RAPGEF5 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z1C8|RPGF3_RAT Rap guanine nucleotide exchange factor 3 OS=Rattus norvegicus GN=Rapgef3 PE=2 SV=2 Back     alignment and function description
>sp|Q9UHV5|RPGFL_HUMAN Rap guanine nucleotide exchange factor-like 1 OS=Homo sapiens GN=RAPGEFL1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R9B2|RPGFL_PONPY Rap guanine nucleotide exchange factor-like 1 OS=Pongo pygmaeus GN=RAPGEFL1 PE=2 SV=1 Back     alignment and function description
>sp|P34578|RPGF1_CAEEL Rap guanine nucleotide exchange factor 1 OS=Caenorhabditis elegans GN=epac-1 PE=4 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
189241119 1019 PREDICTED: similar to AGAP007307-PA [Tri 0.872 0.394 0.674 1e-176
157125916 1047 camp-dependent rap1 guanine-nucleotide e 0.867 0.382 0.614 1e-162
270013336 883 hypothetical protein TcasGA2_TC011926 [T 0.811 0.423 0.658 1e-161
158285893 998 AGAP007307-PA [Anopheles gambiae str. PE 0.856 0.395 0.627 1e-160
170065617 896 c-AMP-dependent rap1 guanine-nucleotide 0.856 0.440 0.616 1e-160
328717287 1004 PREDICTED: rap guanine nucleotide exchan 0.869 0.399 0.621 1e-160
194864014 946 GG10800 [Drosophila erecta] gi|190662594 0.902 0.439 0.590 1e-159
195331917 950 GM20851 [Drosophila sechellia] gi|194124 0.902 0.437 0.590 1e-159
442622530 935 epac, isoform F [Drosophila melanogaster 0.902 0.444 0.590 1e-158
24586077 861 epac, isoform D [Drosophila melanogaster 0.902 0.483 0.590 1e-158
>gi|189241119|ref|XP_972857.2| PREDICTED: similar to AGAP007307-PA [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/433 (67%), Positives = 347/433 (80%), Gaps = 31/433 (7%)

Query: 26  FHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWS 85
           + +DSSN DK+F+L+CKR V+QFV+RWV+ IRH VF+D   + F+ DLASE+ESD   W+
Sbjct: 559 YRIDSSNQDKEFVLACKRRVIQFVYRWVTTIRHPVFEDDVAVEFLDDLASELESDCIQWN 618

Query: 86  GLTEEASLMHHVMTHMKRYQDERAASAGQKWKLPPSGQPI------------------II 127
            L EEASLMHHVM+ ++RYQ++R A  GQKWKLPP GQPI                  II
Sbjct: 619 ALQEEASLMHHVMSQLRRYQEDRKAHEGQKWKLPPCGQPISLFSGNETNRTIIMPQDDII 678

Query: 128 FRVYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKS 187
           FRVYCADHT+CTLR PV+ TAE IK  AAEKL              + S  +LLLVEVKS
Sbjct: 679 FRVYCADHTYCTLRLPVDTTAETIKIVAAEKLK-------------MRSTDELLLVEVKS 725

Query: 188 TGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKEL 247
            GERV F+DND+SIPTALSLNGRIFVSPKDHLDALTC++EQE  T+G+D D+E FS KEL
Sbjct: 726 NGERVTFKDNDISIPTALSLNGRIFVSPKDHLDALTCLAEQEESTQGIDADIELFSTKEL 785

Query: 248 AFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTS 307
           A++MTLFDWDLFW +HEYEL+YHT GRH F QITANLDVFLRRFNEIQ+WV+TEI + TS
Sbjct: 786 AYYMTLFDWDLFWCVHEYELLYHTFGRHHFGQITANLDVFLRRFNEIQFWVVTEICMTTS 845

Query: 308 LNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTEL 367
           L+KRV +LRK IKLAAYCKEY+N+NA  A++MGLSNVAVSRLSLTW+KLPSK +K YTE 
Sbjct: 846 LSKRVALLRKFIKLAAYCKEYQNLNAFCAIVMGLSNVAVSRLSLTWEKLPSKFRKLYTEF 905

Query: 368 EALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQ 427
           E+LIDPS+NHRAYR +V KLQ PV+PFMPLLLKD+ FTH+GNKT +DGLVNFEKMHM AQ
Sbjct: 906 ESLIDPSRNHRAYRVSVGKLQPPVVPFMPLLLKDMTFTHEGNKTSLDGLVNFEKMHMLAQ 965

Query: 428 TLRTLRYCRTRHL 440
           T+RT+R+CR+RHL
Sbjct: 966 TMRTIRFCRSRHL 978

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157125916|ref|XP_001660814.1| camp-dependent rap1 guanine-nucleotide exchange factor [Aedes aegypti] gi|108873480|gb|EAT37705.1| AAEL010328-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|270013336|gb|EFA09784.1| hypothetical protein TcasGA2_TC011926 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|158285893|ref|XP_308514.4| AGAP007307-PA [Anopheles gambiae str. PEST] gi|157020208|gb|EAA45423.4| AGAP007307-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|170065617|ref|XP_001868014.1| c-AMP-dependent rap1 guanine-nucleotide exchange factor [Culex quinquefasciatus] gi|167862556|gb|EDS25939.1| c-AMP-dependent rap1 guanine-nucleotide exchange factor [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|328717287|ref|XP_001947549.2| PREDICTED: rap guanine nucleotide exchange factor 4-like, partial [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|194864014|ref|XP_001970727.1| GG10800 [Drosophila erecta] gi|190662594|gb|EDV59786.1| GG10800 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195331917|ref|XP_002032645.1| GM20851 [Drosophila sechellia] gi|194124615|gb|EDW46658.1| GM20851 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|442622530|ref|NP_001260736.1| epac, isoform F [Drosophila melanogaster] gi|440214121|gb|AGB93269.1| epac, isoform F [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|24586077|ref|NP_724498.1| epac, isoform D [Drosophila melanogaster] gi|442622532|ref|NP_001260737.1| epac, isoform G [Drosophila melanogaster] gi|16197777|gb|AAL13484.1| GH01501p [Drosophila melanogaster] gi|23240201|gb|AAM70831.2| epac, isoform D [Drosophila melanogaster] gi|220947072|gb|ACL86079.1| Epac-PD [synthetic construct] gi|440214122|gb|AGB93270.1| epac, isoform G [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
FB|FBgn0085421998 Epac "Exchange protein directl 0.919 0.424 0.575 7.2e-139
UNIPROTKB|E1BPX71012 RAPGEF4 "Uncharacterized prote 0.906 0.413 0.443 4.5e-98
UNIPROTKB|F1S067836 RAPGEF4 "Uncharacterized prote 0.911 0.502 0.448 4.5e-98
UNIPROTKB|E2RFC11011 RAPGEF4 "Uncharacterized prote 0.908 0.414 0.440 1.5e-97
UNIPROTKB|J9P4R7858 RAPGEF4 "Uncharacterized prote 0.908 0.488 0.440 1.5e-97
UNIPROTKB|F1LNE3836 Rapgef4 "Rap guanine nucleotid 0.911 0.502 0.440 2.5e-97
UNIPROTKB|B7Z278791 RAPGEF4 "cDNA FLJ50956, highly 0.906 0.528 0.439 6.6e-97
UNIPROTKB|B7Z283858 RAPGEF4 "cDNA, FLJ78971, highl 0.906 0.487 0.439 6.6e-97
UNIPROTKB|B7Z3T6840 RAPGEF4 "Rap guanine nucleotid 0.906 0.497 0.439 6.6e-97
UNIPROTKB|E7EVE51010 RAPGEF4 "Rap guanine nucleotid 0.906 0.413 0.439 6.6e-97
FB|FBgn0085421 Epac "Exchange protein directly activated by cAMP ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1359 (483.5 bits), Expect = 7.2e-139, P = 7.2e-139
 Identities = 266/462 (57%), Positives = 338/462 (73%)

Query:     2 DFVRDATYHIVVLKLCS--AKSFQCTFHMDSSN-HDKDFILSCKRSVVQFVFRWVSVIRH 58
             DF+      + V++L    A  F C  H D+    D+++I++ K+ V+QF+ +WV  +RH
Sbjct:   512 DFLLTHIVFMPVVQLVDELANYFHCDAHEDAQTPEDREYIINFKKRVIQFMQKWVMAVRH 571

Query:    59 VVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLMHHVMTHMKRYQDERAASAGQKWKL 118
               F++    +FI+DLA+EVE+D      L EE S++H+V+T M RYQ++R  +AGQKWKL
Sbjct:   572 AAFEEPSVCDFIEDLAAEVEADPD----LNEETSIVHNVLTQMARYQEDRNQNAGQKWKL 627

Query:   119 PPSGQPI-------------------IIFRVYCADHTFCTLRFPVNATAEQIKTSAAEKL 159
             PP+GQPI                   IIFRVYCADHT+CTLRFP++ TAE IK  AA+KL
Sbjct:   628 PPNGQPICLFSGNATPSKTVIRPDDDIIFRVYCADHTYCTLRFPMHTTAELIKACAADKL 687

Query:   160 AEQIKTSAAEKXXXXXXXXXXXXXEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHL 219
               Q+     +              EVKS GER VF+DND+SIPT LSLNGR+FVS KDHL
Sbjct:   688 --QLNRGPED----------LVLVEVKSNGERSVFKDNDVSIPTGLSLNGRLFVSVKDHL 735

Query:   220 DALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQ 279
             DALT + EQE  TEG+D DLE  S KELA+H+TLF+WDLFW++HEYEL+YHT GRH F +
Sbjct:   736 DALTQLQEQECPTEGVDIDLEILSTKELAYHITLFEWDLFWAVHEYELLYHTFGRHHFGK 795

Query:   280 ITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLM 339
             ITANLDVFLRRFNE+QYW++TE++   SL+KRV ++RK IKLAAYCKEY+N+NA FAV+M
Sbjct:   796 ITANLDVFLRRFNEVQYWIVTELVSTPSLSKRVGLVRKFIKLAAYCKEYQNLNAFFAVVM 855

Query:   340 GLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLL 399
             GLSN+AVSRL  TW+K+PSK +K + E EALIDPS+NHRAYR  V KLQ P+IPFMPLLL
Sbjct:   856 GLSNMAVSRLQQTWEKIPSKFRKIFQEFEALIDPSRNHRAYRVFVGKLQPPLIPFMPLLL 915

Query:   400 KDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLG 441
             KD+ F H+GNKT +DGLVNFEKMHM AQT+RT+R+CR+R LG
Sbjct:   916 KDMTFAHEGNKTSLDGLVNFEKMHMMAQTMRTIRFCRSRSLG 957
GO:0017132 "cyclic nucleotide-dependent guanyl-nucleotide exchange factor activity" evidence=ISS
GO:0017034 "Rap guanyl-nucleotide exchange factor activity" evidence=ISS
GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA
GO:0001932 "regulation of protein phosphorylation" evidence=IEA
GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA
GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA
UNIPROTKB|E1BPX7 RAPGEF4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S067 RAPGEF4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFC1 RAPGEF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P4R7 RAPGEF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNE3 Rapgef4 "Rap guanine nucleotide exchange factor 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z278 RAPGEF4 "cDNA FLJ50956, highly similar to Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z283 RAPGEF4 "cDNA, FLJ78971, highly similar to Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z3T6 RAPGEF4 "Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EVE5 RAPGEF4 "Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
smart00147242 smart00147, RasGEF, Guanine nucleotide exchange fa 5e-75
pfam00617185 pfam00617, RasGEF, RasGEF domain 2e-74
cd00155237 cd00155, RasGEF, Guanine nucleotide exchange facto 4e-68
>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information 
 Score =  234 bits (600), Expect = 5e-75
 Identities = 87/204 (42%), Positives = 126/204 (61%), Gaps = 3/204 (1%)

Query: 239 LETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQ-QITANLDVFLRRFNEIQYW 297
           L     KELA  +TL D++LF  I   EL+    G+   +     NL+ F+RRFNE+  W
Sbjct: 1   LLLLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSKKSPSPLNLEAFIRRFNEVSNW 60

Query: 298 VITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLP 357
           V TEIL  T+   R ++L K I++A +C+E  N N+L A++  LS+  +SRL  TW+KLP
Sbjct: 61  VATEILKQTTPKDRAELLSKFIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLP 120

Query: 358 SKSKKTYTELEALIDPSKNHRAYRQAVSKL-QSPVIPFMPLLLKDLAFTHDGNKTVV-DG 415
           SK KK + ELE L+ P +N++ YR+A+S     P IPF+ +LLKDL F  +GN   + +G
Sbjct: 121 SKYKKLFEELEELLSPERNYKNYREALSSCNLPPCIPFLGVLLKDLTFIDEGNPDFLENG 180

Query: 416 LVNFEKMHMFAQTLRTLRYCRTRH 439
           LVNFEK    A+ LR +R  +++ 
Sbjct: 181 LVNFEKRRQIAEILREIRQLQSQP 204

Length = 242
>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain Back     alignment and domain information
>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 461
KOG2378|consensus573 100.0
KOG3542|consensus 1283 100.0
cd00155237 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
smart00147242 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
PF00617188 RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro 100.0
KOG3629|consensus 728 99.96
KOG3541|consensus477 99.95
KOG3417|consensus 840 99.85
cd0178585 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PD 99.77
KOG3417|consensus840 99.58
smart0031490 RA Ras association (RalGDS/AF-6) domain. RasGTP ef 98.5
PF0078893 RA: Ras association (RalGDS/AF-6) domain; InterPro 98.43
cd0176887 RA RA (Ras-associating) ubiquitin domain. The RA ( 98.28
cd06224122 REM Guanine nucleotide exchange factor for Ras-lik 98.21
smart00229127 RasGEFN Guanine nucleotide exchange factor for Ras 98.2
PF00618104 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR00 97.65
cd01781100 AF6_RA_repeat2 Ubiquitin domain of AT-6, second re 97.2
cd0178397 DAGK_delta_RA Ubiquitin-like domain of Diacylgylce 97.0
cd0177597 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase 96.99
cd0178785 GRB7_RA RA (RAS-associated like) domain of Grb7. G 96.83
cd0178487 rasfadin_RA Ubiquitin-like domain of Rasfadin. ras 96.72
cd01779105 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb 96.66
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 95.31
cd0178093 PLC_epsilon_RA Ubiquitin-like domain of Phosphatid 94.66
cd0177896 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour s 94.08
cd01782112 AF6_RA_repeat1 Ubiquitin domain of AT-6, first rep 93.08
cd0181773 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS 89.32
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 89.1
KOG4239|consensus348 89.1
cd0177687 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin 88.96
cd0177787 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin 88.09
cd0176072 RBD Ubiquitin-like domain of RBD-like S/T kinases. 86.97
PF0219671 RBD: Raf-like Ras-binding domain; InterPro: IPR003 86.05
KOG1892|consensus 1629 84.74
smart0045570 RBD Raf-like Ras-binding domain. 84.33
KOG3751|consensus 622 82.87
>KOG2378|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.5e-113  Score=860.69  Aligned_cols=421  Identities=45%  Similarity=0.718  Sum_probs=406.8

Q ss_pred             hhhhh-hhhhHhHH---Hhhhhh--cCcccCCCCCCCCchhhhhhhhhhHHHHHHHHHHhhhcccccChhhhhHHHHHHH
Q psy15588          2 DFVRD-ATYHIVVL---KLCSAK--SFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLAS   75 (461)
Q Consensus         2 ~~~~~-~lth~vfm---~lc~~l--~y~~~~~~~~~~e~~~~~l~~KrrVl~lv~~W~~~~~~~~~~d~~~~~fl~~l~~   75 (461)
                      +|++| +|||.|||   |||+||  |||+++++|+|++..  +++|||||++||+||+++||++|++||++++|||+||+
T Consensus        97 t~l~DFilth~vFMp~~~lC~aL~~hy~~~p~~g~e~~~~--~~r~Kr~vl~lv~qw~aly~~~l~ed~va~~fl~~ly~  174 (573)
T KOG2378|consen   97 TFLEDFILTHDVFMPDNQLCNALLSHYHATPYQGTEQEIT--VVRCKRRVLRLVSQWCALYGDLLQEDPVANSFLEELYC  174 (573)
T ss_pred             HHHHHHHHHhhhccCcHHHHHHHHHHhccCcCCCchhhhh--hHhHHHHHHHHHHHHHHHHhhhcccChhHHHHHHHHHH
Confidence            69999 99999999   999999  999999999998885  99999999999999999999999999999999999999


Q ss_pred             HHhhcchhhhhhhHHHHHHHHHHHHhhhcchhhhhcccccccCCCC--------------CCCcEEEEEeecCCCeeeEe
Q psy15588         76 EVESDSTMWSGLTEEASLMHHVMTHMKRYQDERAASAGQKWKLPPS--------------GQPIIIFRVYCADHTFCTLR  141 (461)
Q Consensus        76 ~v~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~~vy~~d~~~~~~~  141 (461)
                      .|++|.++++ |+|++.++++.+++  +.+++.++|++++++|++|              ++|+++|+||++||||.|++
T Consensus       175 ~V~dD~~~~~-l~E~~l~~~~~i~~--~~~~~~~~pqkk~k~L~~~f~~~d~~~tr~~v~~sDev~~~vy~~Dhsy~tl~  251 (573)
T KOG2378|consen  175 LVIDDRRLYG-LREDILERIQSIRL--STRENNQSPQKKHKALFLQFGVLDEALTRCPVRGSDEVFCIVYLPDHSYVTLR  251 (573)
T ss_pred             HHhhhHHhhh-hhHHHHHHHHHHhc--cccccccChhhhcchHHHhccchhhccccCCccCCCeeeEEEEecCceEEEEE
Confidence            9999999999 99999999998876  6788888999999999877              89999999999999999999


Q ss_pred             ecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCCCCCCcccccccCcccccccCCcccc
Q psy15588        142 FPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLDA  221 (461)
Q Consensus       142 ~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~~~~~~~~~l~ln~r~~~~~~~~~~~  221 (461)
                      +++++||+||+.++++            |+|   .+++++||+|+|+||+++++|+|.+++|++++|||+|++++++.+.
T Consensus       252 ~~vs~svqEI~~~va~------------k~~---~seel~LV~v~s~GEkv~lqPnd~~v~tsL~ln~rLfv~~re~~~~  316 (573)
T KOG2378|consen  252 IRVSASVQEILEAVAE------------KLG---YSEELILVKVSSSGEKVILQPNDRAVFTSLGLNSRLFVVNREEIDL  316 (573)
T ss_pred             eechhHHHHHHHHHHH------------Hhc---cccceeEEEEccCCceeeecCCcceeeeeecccceEEEEchHhhhh
Confidence            9999999999999999            995   5778999999999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCccccCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhcc-CCCCCCcCccHHHHHHHhHHHHHHHHH
Q psy15588        222 LTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVG-RHRFQQITANLDVFLRRFNEIQYWVIT  300 (461)
Q Consensus       222 l~pl~~~~~~~~~~~~~L~~l~~~elA~QLTl~d~~LF~~I~~~Ell~~~~~-k~~~~~~tpnL~~~~~~fN~ls~WV~t  300 (461)
                      |+|+|+|++|+.| ...|..++++++|.|||.+||+||++||..|++++.++ .......+.|++.+.+|||+++.||++
T Consensus       317 LvP~peq~gpt~g-~~~l~lv~s~dlA~qLt~fdw~Lfnsih~~ElI~y~i~~q~~~~~~tanleLl~~R~neVq~wv~t  395 (573)
T KOG2378|consen  317 LVPLPEQEGPTPG-SSILHLVSSKDLAHQLTLFDWSLFNSIHENELIHYVIGGQIPCDRNTANLELLLRRFNEVQHWVAT  395 (573)
T ss_pred             cCCChhhcCCCCC-cceeeeccHHHHHHHHHHHHHHHHhhhhHhHhhHhhhcccCCCCccchhHHHHHHHHhhchhhhhc
Confidence            9999999999998 56788899999999999999999999999999999998 445556899999999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHHHHHHHhcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCCCcHHHH
Q psy15588        301 EILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAY  380 (461)
Q Consensus       301 eIL~~~~~~~Ra~li~kFIkIA~~c~~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s~N~~~Y  380 (461)
                      +||.|+.+.+|+++++||||||.+|++.+|.|++|||++||++.+|+||..||+++|.++++.|+++++++||++||+.|
T Consensus       396 ei~lc~ql~kr~qllkkfiKiaal~ke~~~l~sffAV~~GL~~~avSrl~~tweklP~k~kk~~s~~enl~dP~~nhr~y  475 (573)
T KOG2378|consen  396 EILLCQQLGKRCQLLKKFIKIAALCKEGENLNSFFAVVMGLSNRAVSRLDLTWEKLPYKFKKLFSELENLLDPCRNHRTY  475 (573)
T ss_pred             hhhhhcchhHHHHHHHHHHHHHHHHHhhccccchHHHhhcchhHHHHhhhcccccCchHHHhHHHHHHhcCCchhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCccccccchhhhhhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhhhcCCCCc
Q psy15588        381 RQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLGRP  443 (461)
Q Consensus       381 R~~l~~~~~P~IPflgl~LkDLtfi~egn~t~~dgLINf~K~r~ia~~i~~i~~~q~~~y~~~  443 (461)
                      |.++++++||.|||+|+++||+||+||||++++||+|||+||||||+++|++++|+++|+++.
T Consensus       476 R~l~~km~pp~ipf~PlllkD~tf~heGnkt~v~glVNfEKmhmiA~~~Rt~r~cRS~p~~~~  538 (573)
T KOG2378|consen  476 RLLSSKMSPPYIPFMPLLLKDLTFIHEGNKTFVDGLVNFEKMHMIAKTARTLRHCRSQPLNPG  538 (573)
T ss_pred             HHHHHhcCCCCCCccchhhhhceeeccchHHHHhcchhHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999974

>KOG3542|consensus Back     alignment and domain information
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] Back     alignment and domain information
>KOG3629|consensus Back     alignment and domain information
>KOG3541|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information
>smart00314 RA Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals [] Back     alignment and domain information
>cd01768 RA RA (Ras-associating) ubiquitin domain Back     alignment and domain information
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif) Back     alignment and domain information
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif Back     alignment and domain information
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved [] Back     alignment and domain information
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat Back     alignment and domain information
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK) Back     alignment and domain information
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase Back     alignment and domain information
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7 Back     alignment and domain information
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin Back     alignment and domain information
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase Back     alignment and domain information
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein Back     alignment and domain information
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat Back     alignment and domain information
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14 Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>KOG4239|consensus Back     alignment and domain information
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector Back     alignment and domain information
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27) Back     alignment and domain information
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases Back     alignment and domain information
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras Back     alignment and domain information
>KOG1892|consensus Back     alignment and domain information
>smart00455 RBD Raf-like Ras-binding domain Back     alignment and domain information
>KOG3751|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
3cf6_E694 Structure Of Epac2 In Complex With Cyclic-Amp And R 1e-109
4f7z_A999 Conformational Dynamics Of Exchange Protein Directl 1e-109
2byv_E999 Structure Of The Camp Responsive Exchange Factor Ep 1e-109
3qxl_A271 Crystal Structure Of The Cdc25 Domain From Ral-Spec 1e-20
2ije_S240 Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le 4e-17
3ksy_A1049 Crystal Structure Of The Histone Domain, Dh-Ph Unit 3e-15
1xd4_A852 Crystal Structure Of The Dh-Ph-Cat Module Of Son Of 3e-15
1xdv_A847 Experimentally Phased Structure Of Human The Son Of 3e-15
2ii0_A490 Crystal Structure Of Catalytic Domain Of Son Of Sev 3e-15
1xd2_C484 Crystal Structure Of A Ternary Ras:sos:ras*gdp Comp 4e-15
1nvu_S481 Structural Evidence For Feedback Activation By Rasg 4e-15
1bkd_S477 Complex Of Human H-Ras With Human Sos-1 Length = 47 4e-15
2dhz_A120 Solution Structure Of The Ra Domain In The Human Li 6e-06
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap Length = 694 Back     alignment and structure 
Iteration: 1

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/420 (45%), Positives = 273/420 (65%), Gaps = 37/420 (8%)
Query: 36  DFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDSTMWSGLTEEASLM- 94
           D+ L+ KR V++ V +W ++   ++ +D   M F+++    V  D+ M +   E+   + 
Sbjct: 251 DYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELE 310
Query: 95  ----------------HHVMTHMKRYQDERAASAGQKWKLPPSGQPIIIFRVYCADHTFC 138
                           H V+       DERA     + + P  G   ++F+VYC DHT+ 
Sbjct: 311 KIVKQISEDAKAPQKKHKVLLQQFNTGDERA-----QKRQPIRGSDEVLFKVYCIDHTYT 365
Query: 139 TLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKXXXXXXXXXXXXXEVKSTGERVVFRDND 198
           T+R PV A+ +++ ++ A+KL                        ++ S GE+VV + ND
Sbjct: 366 TIRVPVAASVKEVISAVADKLGS---------------GEGLIIVKMNSGGEKVVLKSND 410
Query: 199 LSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDL 258
           +S+ T L++NGR+F  P++  D+LT + EQE  T G     E  S+K+LA+ MT +DW+L
Sbjct: 411 VSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWEL 470
Query: 259 FWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKM 318
           F  +HE EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K 
Sbjct: 471 FNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKF 530
Query: 319 IKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHR 378
           IK+AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHR
Sbjct: 531 IKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHR 590
Query: 379 AYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTR 438
           AYR   +KL+ P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++
Sbjct: 591 AYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQ 650
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly Activated By Camp Length = 999 Back     alignment and structure
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In Its Auto-Inhibited State Length = 999 Back     alignment and structure
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific Guanine- Nucleotide Exchange Factor Ralgps1a Length = 271 Back     alignment and structure
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240 Back     alignment and structure
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049 Back     alignment and structure
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of Sevenless (Sos) Length = 852 Back     alignment and structure
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of Sevenless Protein At 4.1 Ang. Length = 847 Back     alignment and structure
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless (Rem-Cdc25) In The Absence Of Ras Length = 490 Back     alignment and structure
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex Length = 484 Back     alignment and structure
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-Specific Nucleotide Exchange Factor Sos Length = 481 Back     alignment and structure
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 Length = 477 Back     alignment and structure
>pdb|2DHZ|A Chain A, Solution Structure Of The Ra Domain In The Human Link Guanine Nucleotide Exchange Factor Ii (Link-Gefii) Length = 120 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 1e-109
2byv_E999 RAP guanine nucleotide exchange factor 4; EPAC2, C 1e-105
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 8e-80
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 8e-76
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 2e-66
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 4e-65
3t6g_A331 SH2 domain-containing protein 3C; CDC25-homology d 1e-46
3t6a_A333 Breast cancer anti-estrogen resistance protein 3; 5e-46
1wgy_A104 RAP guanine nucleotide exchange factor 5; ubiquiti 6e-36
2dhz_A120 RAP guanine nucleotide exchange factor (GEF)- like 6e-35
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 Back     alignment and structure
 Score =  337 bits (866), Expect = e-109
 Identities = 187/430 (43%), Positives = 277/430 (64%), Gaps = 27/430 (6%)

Query: 22  FQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLASEVESDS 81
           +       +     D+ L+ KR V++ V +W ++   ++ +D   M F+++    V  D+
Sbjct: 237 YHAQPSQGTEQERMDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDA 296

Query: 82  TMWSGLTEEASLMHHVMTHMKR------------YQDERAASAGQKWKLPPSGQPIIIFR 129
            M +   E+   +  ++  +               Q         + + P  G   ++F+
Sbjct: 297 RMMAAFKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFK 356

Query: 130 VYCADHTFCTLRFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTG 189
           VYC DHT+ T+R PV A+ +++ ++ A+KL                S   L++V++ S G
Sbjct: 357 VYCIDHTYTTIRVPVAASVKEVISAVADKLG---------------SGEGLIIVKMNSGG 401

Query: 190 ERVVFRDNDLSIPTALSLNGRIFVSPKDHLDALTCISEQETYTEGMDFDLETFSAKELAF 249
           E+VV + ND+S+ T L++NGR+F  P++  D+LT + EQE  T G     E  S+K+LA+
Sbjct: 402 EKVVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAY 461

Query: 250 HMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLN 309
            MT +DW+LF  +HE EL+YHT GRH F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+
Sbjct: 462 QMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLS 521

Query: 310 KRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEA 369
           KRVQ+L+K IK+AA+CKEY+N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+
Sbjct: 522 KRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFES 581

Query: 370 LIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTL 429
           L+DPS+NHRAYR   +KL+ P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T 
Sbjct: 582 LMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTA 641

Query: 430 RTLRYCRTRH 439
           RT+RY R++ 
Sbjct: 642 RTVRYYRSQP 651
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271 Back     alignment and structure
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Length = 331 Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Length = 333 Back     alignment and structure
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5 Length = 104 Back     alignment and structure
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens} Length = 120 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 100.0
4f7z_A999 RAP guanine nucleotide exchange factor 4; cyclic n 100.0
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 100.0
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 100.0
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 100.0
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 100.0
2dhz_A120 RAP guanine nucleotide exchange factor (GEF)- like 99.94
1wgy_A104 RAP guanine nucleotide exchange factor 5; ubiquiti 99.94
3t6g_A331 SH2 domain-containing protein 3C; CDC25-homology d 99.86
3t6a_A333 Breast cancer anti-estrogen resistance protein 3; 99.85
2c5l_C117 Phosphoinositide-specific phospholipase C PLC-epsi 97.58
1wxa_A116 Afadin, AF-6 protein; RAS-binding domain, ubiquiti 97.49
1wgr_A100 Growth factor receptor-bound protein 7; RA domain, 97.21
3hk0_A256 Growth factor receptor-bound protein 10; GRB10, RA 95.8
4gmv_A281 RAS-associated and pleckstrin homology domains-CO 95.62
2bye_A110 Phospholipase C, epsilon 1; RAS association domain 95.35
3ddc_B163 RAS association domain-containing family protein; 94.49
3tca_A291 Amyloid beta A4 precursor protein-binding family 1 92.44
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 91.3
3ec8_A166 Putative uncharacterized protein FLJ10324; beta ba 90.82
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 89.12
2al6_A375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 87.11
3au4_A555 Myosin-X; protein-protein complex, motor protein c 85.08
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 84.9
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 84.49
1lfd_A87 Ralgds; RAL, effector interaction; HET: GNP; 2.10A 82.41
1rax_A115 Protein (RA-domain of RAL guanosine dissociation s 81.69
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=1.6e-97  Score=820.50  Aligned_cols=435  Identities=45%  Similarity=0.814  Sum_probs=397.6

Q ss_pred             hhhhh-hhhhHhHH---Hhhhhh--cCcccCCCCCCCCchhhhhhhhhhHHHHHHHHHHhhhcccccChhhhhHHHHHHH
Q psy15588          2 DFVRD-ATYHIVVL---KLCSAK--SFQCTFHMDSSNHDKDFILSCKRSVVQFVFRWVSVIRHVVFDDTGTMNFIQDLAS   75 (461)
Q Consensus         2 ~~~~~-~lth~vfm---~lc~~l--~y~~~~~~~~~~e~~~~~l~~KrrVl~lv~~W~~~~~~~~~~d~~~~~fl~~l~~   75 (461)
                      .|+.| +|||++||   ++|++|  +|++++++|+++|+.+|++++|+||+++|++|+++|++.|++||++++|||+||+
T Consensus       211 ~~~~dflLTh~~fm~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~  290 (694)
T 3cf6_E          211 SVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQGTEQERMDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYV  290 (694)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGCHHHHHHHHHHHH
T ss_pred             hhhhhhhheehhhcCcHHHHHHHHHHhccCccCCccccchhhhhhHHHHHHHHHHHHHHhcCCccccChHHHHHHHHHHH
Confidence            47888 99999999   999999  7788899999989999999999999999999999999999999999999999999


Q ss_pred             HHhhcchhhhhhhHHHHHHHHHHHHhhhcchhhhhcccccccCCCC---------------CCCcEEEEEeecCCCeeeE
Q psy15588         76 EVESDSTMWSGLTEEASLMHHVMTHMKRYQDERAASAGQKWKLPPS---------------GQPIIIFRVYCADHTFCTL  140 (461)
Q Consensus        76 ~v~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~vy~~d~~~~~~  140 (461)
                      .|++|.+++++|++++.+++++++   ++..++.+|+.+.+.++++               ++||++||||++||||+|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~d~~~~~~  367 (694)
T 3cf6_E          291 SVSDDARMMAAFKEQLPELEKIVK---QISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTI  367 (694)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHC---------------------------------CCCCCTTSEEEEEEECTTSCEEEE
T ss_pred             HHHhhHHhhHHHHHHHHHHHHHHh---hcCCcccCccccccccccccCCCCcccccCCCCCCCCceeEEEEccCCceeEE
Confidence            999999999999999999998875   4667777777777766533               8899999999999999999


Q ss_pred             eecccCCHHHHHHHHHHHHHHHHhhhhhhhhcCcCCCCCeEEEEeeecCcceecCCCCCCcccccccCcccccccCCccc
Q psy15588        141 RFPVNATAEQIKTSAAEKLAEQIKTSAAEKLGLLVSPSDLLLVEVKSTGERVVFRDNDLSIPTALSLNGRIFVSPKDHLD  220 (461)
Q Consensus       141 ~~~~~~t~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~v~~~~e~~~~~~~~~~~~~~l~ln~r~~~~~~~~~~  220 (461)
                      ++++++||+|||+.|++            |+|   ..++++||+|+++||+++++|+|.++++++++|||+|++++++.+
T Consensus       368 ~~~~~~~~~~~~~~~~~------------~~~---~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  432 (694)
T 3cf6_E          368 RVPVAASVKEVISAVAD------------KLG---SGEGLIIVKMNSGGEKVVLKSNDVSVFTTLTINGRLFACPREQFD  432 (694)
T ss_dssp             EEETTCBHHHHHHHHHH------------HHT---CCSCEEEEEECTTSCEEECCTTCBCCGGGSCTTCEEEEEEGGGGG
T ss_pred             EeeccccHHHHHHHHHH------------HhC---CcccceEEEEeecCcccccCccccccccccccccceecccccccc
Confidence            99999999999999999            996   467899999999999999999999999999999999999999999


Q ss_pred             cccCCccccccccCCccccCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCCCCCcCccHHHHHHHhHHHHHHHHH
Q psy15588        221 ALTCISEQETYTEGMDFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVIT  300 (461)
Q Consensus       221 ~l~pl~~~~~~~~~~~~~L~~l~~~elA~QLTl~d~~LF~~I~~~Ell~~~~~k~~~~~~tpnL~~~~~~fN~ls~WV~t  300 (461)
                      +++|+|++.+|..+...+|.+++|.+||+|||++|+++|++|+|.|++++.|++.+....+||+..++++||.+++||++
T Consensus       433 ~l~p~~~~~~p~~~~~~~l~~~~~~elA~QLTl~d~~lf~~I~~~E~l~~~~~~~~~~~~~pni~~~i~~fN~ls~wV~~  512 (694)
T 3cf6_E          433 SLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVT  512 (694)
T ss_dssp             GCCCCGGGSCCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHCGGGTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCChhhcCCCCCCCCchhcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            99999999999998878899999999999999999999999999999999999877667899999999999999999999


Q ss_pred             HHhccCChhHHHHHHHHHHHHHHHHHhcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCCCcHHHH
Q psy15588        301 EILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAY  380 (461)
Q Consensus       301 eIL~~~~~~~Ra~li~kFIkIA~~c~~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s~N~~~Y  380 (461)
                      +||.++++++|+++|++||+||.+|+++|||||++||++||++++|+||++||+.||+++++.|++|+.+++|++||++|
T Consensus       513 ~Il~~~~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~y  592 (694)
T 3cf6_E          513 EVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAY  592 (694)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCccccccchhhhhhhhhcCCCCCCCCcccHHHHHHHHHHHHHHHHhhhcCCCCch--------hhhhcccc
Q psy15588        381 RQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLGRPL--------ARQRFVVP  452 (461)
Q Consensus       381 R~~l~~~~~P~IPflgl~LkDLtfi~egn~t~~dgLINf~K~r~ia~~i~~i~~~q~~~y~~~~--------~~Q~~l~~  452 (461)
                      |.+++++++|||||+|+||+||+|++||||++++|+|||+|+|+++++|+.+++||+.||++.+        .+|.|+.+
T Consensus       593 R~~l~~~~~p~IPflg~~L~DL~fi~egn~~~~~~lINf~K~r~i~~ii~~i~~~q~~~y~~~~~~~~~~~~~i~~~l~~  672 (694)
T 3cf6_E          593 RLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSYVRQ  672 (694)
T ss_dssp             HHHHHHSCSSCBCCHHHHHHHHHHHHHHSCSEETTEEEHHHHHHHHHHHHHHHHHTSSCCC---------CHHHHHHHTS
T ss_pred             HHHHHhcCCCCcccHHHHHHHHHHHHcCCCchhccCcCHHHHHHHHHHHHHHHHHhhCCCCcCccccccchHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999998864        47788866


Q ss_pred             CC
Q psy15588        453 QE  454 (461)
Q Consensus       453 ~~  454 (461)
                      ..
T Consensus       673 l~  674 (694)
T 3cf6_E          673 LN  674 (694)
T ss_dssp             CC
T ss_pred             CC
Confidence            44
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Back     alignment and structure
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Back     alignment and structure
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A Back     alignment and structure
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5 Back     alignment and structure
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Back     alignment and structure
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A Back     alignment and structure
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus} Back     alignment and structure
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus} Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Back     alignment and structure
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens} Back     alignment and structure
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A Back     alignment and structure
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 461
d1nvus_481 a.117.1.1 (S:) Son of sevenless protein homolog 1 6e-53
d1wgya_104 d.15.1.5 (A:) Rap guanine nucleotide exchange fact 4e-40
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481 Back     information, alignment and structure

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  183 bits (464), Expect = 6e-53
 Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 6/203 (2%)

Query: 237 FDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQY 296
           FDL T    E+A  +TL + DL+ ++   ELV     +   +  + NL   +R    +  
Sbjct: 209 FDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTL 268

Query: 297 WVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKL 356
           W    I+   +L +RV ++ ++I++    +E  N N +  V+  +++  V RL  T++++
Sbjct: 269 WFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQI 328

Query: 357 PSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVV--- 413
           PS+ KK   E   L     +++ Y   +  +  P +PF  + L ++  T +GN  V+   
Sbjct: 329 PSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRH 386

Query: 414 -DGLVNFEKMHMFAQTLRTLRYC 435
              L+NF K    A+    ++  
Sbjct: 387 GKELINFSKRRKVAEITGEIQQY 409
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
d1nvus_481 Son of sevenless protein homolog 1 (sos-1) {Human 100.0
d1wgya_104 Rap guanine nucleotide exchange factor 5, RapGEF5 99.96
d1wxaa1103 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 97.79
d1wgra_100 Growth factor receptor-bound protein 7, GRB-7 {Hum 97.42
d2byea1109 Phospholipase C-epsilon-1 {Human (Homo sapiens) [T 96.84
d2c5lc1106 Phospholipase C-epsilon-1 {Human (Homo sapiens) [T 94.94
d1wxma173 A-Raf proto-oncogene serine/threonine-protein kina 92.17
d1c1yb_77 c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} 82.8
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-53  Score=445.13  Aligned_cols=217  Identities=24%  Similarity=0.414  Sum_probs=206.3

Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCCCCCcCccHHHHHHHhHHHHHHHHHHHhccCChhHHHHHH
Q psy15588        236 DFDLETFSAKELAFHMTLFDWDLFWSIHEYELVYHTVGRHRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQIL  315 (461)
Q Consensus       236 ~~~L~~l~~~elA~QLTl~d~~LF~~I~~~Ell~~~~~k~~~~~~tpnL~~~~~~fN~ls~WV~teIL~~~~~~~Ra~li  315 (461)
                      .+.|.+++|.+||+|||++|+++|++|++.|++++.|++.+....+|||..++++||.++.||+++||.++++++|+++|
T Consensus       208 ~~~l~~~~~~eiA~QLTl~~~~~f~~I~~~E~l~~~~~~~~~~~~~pni~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i  287 (481)
T d1nvus_         208 TFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVV  287 (481)
T ss_dssp             TCCTTTSCHHHHHHHHHHHHHHHHHTCCGGGTGGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHcccCCCCCCCcHHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35789999999999999999999999999999999999877666799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHhcccccccccchHhhccCChhhHHHHHHHHhccCCCCcHHHHHHHHhhCCCCccccc
Q psy15588        316 RKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFM  395 (461)
Q Consensus       316 ~kFIkIA~~c~~l~Nfns~~AI~~gL~~~aV~RL~~TWe~l~~k~kk~~~~L~~L~d~s~N~~~YR~~l~~~~~P~IPfl  395 (461)
                      ++||+||.+|+++|||||++||++||++++|.||++||+.++.+.++.|++|+.+++  +||++||..+.+.++|||||+
T Consensus       288 ~~fI~ia~~~~~l~Nf~s~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~--~n~~~yr~~l~~~~~p~IP~l  365 (481)
T d1nvus_         288 SRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSE--DHYKKYLAKLRSINPPCVPFF  365 (481)
T ss_dssp             HHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHSCSCCBCCS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHhcc--hhHHHHHHHHhcCCCCeEeee
Confidence            999999999999999999999999999999999999999999999999999999974  799999999999999999999


Q ss_pred             cchhhhhhhhhcCCCCCC----CCcccHHHHHHHHHHHHHHHHhhhcCCCCc--hhhhhccccCC
Q psy15588        396 PLLLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQTLRTLRYCRTRHLGRP--LARQRFVVPQE  454 (461)
Q Consensus       396 gl~LkDLtfi~egn~t~~----dgLINf~K~r~ia~~i~~i~~~q~~~y~~~--~~~Q~~l~~~~  454 (461)
                      |++|+||+|+++|||+++    +|+|||+|+++++++|..+.+||+.+|++.  +.+|.|+.+..
T Consensus       366 g~~l~Dl~~~~~gn~~~~~~~~~~lINf~K~~~i~~~i~~i~~~Q~~~y~~~~~~~i~~~l~~~~  430 (481)
T d1nvus_         366 GIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLN  430 (481)
T ss_dssp             HHHHHHHHHHHHSSCSEEEETTEEEEEHHHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHTCC
T ss_pred             ccHHHHHHHHHhcCCccccCCCCceEcHHHHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHhhh
Confidence            999999999999999987    589999999999999999999999998875  57889987654
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2byea1 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c5lc1 d.15.1.5 (C:2134-2239) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure