Psyllid ID: psy15601

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLSGQTYLCTNVLCDTKTISDRFGWLMMPNSSRDGTSPVADQGSMTLFLHLSTYRTYLSILLILINLKSNQG
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHcccccccccccHHHHHHHccccccccEEEccccccEEEEccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccEEEcccccccEEEEccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
siiespdkqlTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYkrrpqrmlsgqtylctnvlcdtktisdrfgwlmmpnssrdgtspvadqgsmTLFLHLSTYRTYLSILLILINLKSNQG
Flexible Loop (DISEMBL)
siiespdkqlTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKrrpqrmlsgqtylctNVLCDTKTISDRFGWLMMPNSSRDGTSPVADQGSMTLFLHLSTYRTYLSILLILINLKSNQG
Low Complexity Region (SEG)
SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLSGQTYLCTNVLCDTKTISDRFGWLMMPNSSRDGTSPVADQGSMTLFLHLSTYRTYlsillilinlksnQG
Disordered region (IsUnstruct)
*********LTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLSGQTYLCTNVLCDTKTISDRFGWLMM***************SMTLFLHLSTYRTYLSILLILINL*****
Disordered Region (DISOPRED)
******DKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDE**********************************************************************************
Disordered Region (DISEMBL)
SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLSGQTYLCTNVLCDTKTISDRFGWLMMPNSSRDGTSPVADQGSMTLFLHLSTYRTYLSILLILINLKSNQG
Disordered Region (DISPRO)
*****PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKR*******************************************************STYRTYLSILLILINLK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLSGQTYLCTNVLCDTKTISDRFGWLMMPNSSRDGTSPVADQGSMTLFLHLSTYRTYLSILLILINLKSNQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q498D1	711	Forkhead box protein P1 O	yes	N/A	0.576	0.116	0.785	2e-35
P58462	705	Forkhead box protein P1 O	yes	N/A	0.576	0.117	0.785	3e-35
Q9H334	677	Forkhead box protein P1 O	yes	N/A	0.576	0.122	0.785	4e-35
A4IFD2	674	Forkhead box protein P1 O	yes	N/A	0.576	0.123	0.785	6e-35
Q2LE08	659	Forkhead box protein P1-B	yes	N/A	0.576	0.125	0.773	6e-35
Q5W1J5	578	Forkhead box protein P1 O	N/A	N/A	0.569	0.141	0.783	1e-34
Q58NQ4	686	Forkhead box protein P1 O	yes	N/A	0.576	0.120	0.773	3e-34
Q4VYR7	641	Forkhead box protein P4 O	N/A	N/A	0.583	0.131	0.717	2e-33
Q9DBY0	795	Forkhead box protein P4 O	no	N/A	0.583	0.105	0.717	2e-33
Q8IVH2	680	Forkhead box protein P4 O	no	N/A	0.583	0.123	0.717	2e-33

>sp|Q498D1|FOXP1_RAT Forkhead box protein P1 OS=Rattus norvegicus GN=Foxp1 PE=2 SV=1

 Score =  147 bits (370), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/84 (78%), Positives = 73/84 (86%), Gaps = 1/84 (1%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 511 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 570

Query: 61  DEVEFYKRRPQRMLSGQTYLCTNV 84
           DEVEF KRRPQ+ +SG   L  N+
Sbjct: 571 DEVEFQKRRPQK-ISGNPSLIKNM 593

Transcriptional repressor that plays an important role in the specification and differentiation of lung epithelium. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential. Essential transcriptional regulator of B-cell development.
Rattus norvegicus (taxid: 10116)

>sp|P58462|FOXP1_MOUSE Forkhead box protein P1 OS=Mus musculus GN=Foxp1 PE=1 SV=1

 Score =  147 bits (370), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/84 (78%), Positives = 73/84 (86%), Gaps = 1/84 (1%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 505 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 564

Query: 61  DEVEFYKRRPQRMLSGQTYLCTNV 84
           DEVEF KRRPQ+ +SG   L  N+
Sbjct: 565 DEVEFQKRRPQK-ISGNPSLIKNM 587

Transcriptional repressor that plays an important role in the specification and differentiation of lung epithelium. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential. Essential transcriptional regulator of B-cell development.

Mus musculus (taxid: 10090)

>sp|Q9H334|FOXP1_HUMAN Forkhead box protein P1 OS=Homo sapiens GN=FOXP1 PE=1 SV=1

 Score =  146 bits (369), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/84 (78%), Positives = 73/84 (86%), Gaps = 1/84 (1%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 477 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 536

Query: 61  DEVEFYKRRPQRMLSGQTYLCTNV 84
           DEVEF KRRPQ+ +SG   L  N+
Sbjct: 537 DEVEFQKRRPQK-ISGNPSLIKNM 559

Transcriptional repressor. It plays an important role in the specification and differentiation of lung epithelium. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential. Essential transcriptional regulator of B-cell development.

Homo sapiens (taxid: 9606)

>sp|A4IFD2|FOXP1_BOVIN Forkhead box protein P1 OS=Bos taurus GN=FOXP1 PE=2 SV=1

 Score =  145 bits (367), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 66/84 (78%), Positives = 73/84 (86%), Gaps = 1/84 (1%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 474 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 533

Query: 61  DEVEFYKRRPQRMLSGQTYLCTNV 84
           DEVEF KRRPQ+ +SG   L  N+
Sbjct: 534 DEVEFQKRRPQK-ISGNPSLIKNM 556

Transcriptional repressor that plays an important role in the specification and differentiation of lung epithelium. Can act with CTBP1 to synergistically repress transcription but CTPBP1 is not essential. Essential transcriptional regulator of B-cell development.

Bos taurus (taxid: 9913)

>sp|Q2LE08|FXP1B_DANRE Forkhead box protein P1-B OS=Danio rerio GN=foxp1b PE=2 SV=1

 Score =  145 bits (367), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/84 (77%), Positives = 73/84 (86%), Gaps = 1/84 (1%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 460 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 519

Query: 61  DEVEFYKRRPQRMLSGQTYLCTNV 84
           DE+EF KRRPQ+ +SG   L  N+
Sbjct: 520 DELEFQKRRPQK-ISGSPALVKNI 542

Transcriptional repressor.

Danio rerio (taxid: 7955)

>sp|Q5W1J5|FOXP1_XENLA Forkhead box protein P1 OS=Xenopus laevis GN=foxp1 PE=1 SV=1

 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 72/83 (86%), Gaps = 1/83 (1%)

Query: 2   IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVD 61
           I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTVD
Sbjct: 379 ILESPEKQLTLNEIYNWFTRQFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVD 438

Query: 62  EVEFYKRRPQRMLSGQTYLCTNV 84
           E+EF KRRPQ+ +SG   L  N+
Sbjct: 439 EMEFQKRRPQK-ISGSPTLIKNI 460

Transcriptional repressor.

Xenopus laevis (taxid: 8355)

>sp|Q58NQ4|FOXP1_CHICK Forkhead box protein P1 OS=Gallus gallus GN=FOXP1 PE=2 SV=1

 Score =  143 bits (361), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/84 (77%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 486 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 545

Query: 61  DEVEFYKRRPQRMLSGQTYLCTNV 84
           DE EF KRRPQ+ +SG   L  N+
Sbjct: 546 DEQEFQKRRPQK-ISGNPSLIKNI 568

Transcriptional repressor.

Gallus gallus (taxid: 9031)

>sp|Q4VYR7|FOXP4_XENLA Forkhead box protein P4 OS=Xenopus laevis GN=foxp4 PE=2 SV=1

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 72/85 (84%), Gaps = 1/85 (1%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +I+E+PD+QLTLNEIYNWF   F YFRRN ATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 448 AILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTV 507

Query: 61  DEVEFYKRRPQRMLSGQTYLCTNVL 85
           DE+E+ KRRP +M +G   L  N++
Sbjct: 508 DELEYQKRRPPKM-TGSPTLVKNMI 531

Transcriptional repressor.

Xenopus laevis (taxid: 8355)

>sp|Q9DBY0|FOXP4_MOUSE Forkhead box protein P4 OS=Mus musculus GN=Foxp4 PE=1 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/85 (71%), Positives = 71/85 (83%), Gaps = 1/85 (1%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +I+E+PD+QLTLNEIYNWF   F YFRRN ATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 471 AILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTV 530

Query: 61  DEVEFYKRRPQRMLSGQTYLCTNVL 85
           DE E+ KRRP +M +G   L  N++
Sbjct: 531 DEREYQKRRPPKM-TGSPTLVKNMI 554

Transcriptional repressor that represses lung-specific expression.

Mus musculus (taxid: 10090)

>sp|Q8IVH2|FOXP4_HUMAN Forkhead box protein P4 OS=Homo sapiens GN=FOXP4 PE=1 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/85 (71%), Positives = 71/85 (83%), Gaps = 1/85 (1%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +I+E+PD+QLTLNEIYNWF   F YFRRN ATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 479 AILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTV 538

Query: 61  DEVEFYKRRPQRMLSGQTYLCTNVL 85
           DE E+ KRRP +M +G   L  N++
Sbjct: 539 DEREYQKRRPPKM-TGSPTLVKNMI 562

Transcriptional repressor that represses lung-specific expression.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
157279729	735	FoxP protein [Apis mellifera] gi|1561512	0.520	0.102	0.973	9e-40
345487155	904	PREDICTED: hypothetical protein LOC10011	0.520	0.082	0.973	3e-39
427788833	765	hypothetical protein [Rhipicephalus pulc	0.506	0.095	0.958	3e-39
427788831	765	hypothetical protein [Rhipicephalus pulc	0.506	0.095	0.958	3e-39
345487153	910	PREDICTED: hypothetical protein LOC10011	0.520	0.082	0.973	3e-39
345487157	915	PREDICTED: hypothetical protein LOC10011	0.520	0.081	0.973	3e-39
383857439	727	PREDICTED: forkhead box protein P2-like	0.520	0.103	0.96	3e-39
340723397	736	PREDICTED: hypothetical protein LOC10065	0.520	0.101	0.96	3e-39
189233871	901	PREDICTED: similar to FoxP protein [Trib	0.527	0.084	0.973	3e-39
307212692	726	Forkhead box protein P4 [Harpegnathos sa	0.520	0.103	0.96	4e-39

>gi|157279729|ref|NP_001098419.1| FoxP protein [Apis mellifera] gi|156151280|dbj|BAF75928.1| FoxP protein [Apis mellifera]

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/75 (97%), Positives = 73/75 (97%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct: 516 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 575

Query: 61  DEVEFYKRRPQRMLS 75
           DEVEFYKRRPQR  S
Sbjct: 576 DEVEFYKRRPQRACS 590

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487155|ref|XP_003425635.1| PREDICTED: hypothetical protein LOC100115252 isoform 2 [Nasonia vitripennis]

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/75 (97%), Positives = 73/75 (97%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct: 651 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 710

Query: 61  DEVEFYKRRPQRMLS 75
           DEVEFYKRRPQR  S
Sbjct: 711 DEVEFYKRRPQRACS 725

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427788833|gb|JAA59868.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/73 (95%), Positives = 73/73 (100%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct: 473 AIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 532

Query: 61  DEVEFYKRRPQRM 73
           DE+EFYKRRPQR+
Sbjct: 533 DEIEFYKRRPQRL 545

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427788831|gb|JAA59867.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/73 (95%), Positives = 73/73 (100%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           +IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct: 473 AIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 532

Query: 61  DEVEFYKRRPQRM 73
           DE+EFYKRRPQR+
Sbjct: 533 DEIEFYKRRPQRL 545

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487153|ref|XP_001600027.2| PREDICTED: hypothetical protein LOC100115252 isoform 1 [Nasonia vitripennis]

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/75 (97%), Positives = 73/75 (97%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct: 657 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 716

Query: 61  DEVEFYKRRPQRMLS 75
           DEVEFYKRRPQR  S
Sbjct: 717 DEVEFYKRRPQRACS 731

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487157|ref|XP_003425636.1| PREDICTED: hypothetical protein LOC100115252 isoform 3 [Nasonia vitripennis]

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/75 (97%), Positives = 73/75 (97%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct: 662 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 721

Query: 61  DEVEFYKRRPQRMLS 75
           DEVEFYKRRPQR  S
Sbjct: 722 DEVEFYKRRPQRACS 736

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857439|ref|XP_003704212.1| PREDICTED: forkhead box protein P2-like [Megachile rotundata]

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/75 (96%), Positives = 73/75 (97%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           SIIESP+KQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct: 508 SIIESPEKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 567

Query: 61  DEVEFYKRRPQRMLS 75
           DEVEFYKRRPQR  S
Sbjct: 568 DEVEFYKRRPQRACS 582

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723397|ref|XP_003400076.1| PREDICTED: hypothetical protein LOC100651096 [Bombus terrestris] gi|350405998|ref|XP_003487622.1| PREDICTED: hypothetical protein LOC100746295 [Bombus impatiens]

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/75 (96%), Positives = 73/75 (97%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           SIIESP+KQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct: 517 SIIESPEKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 576

Query: 61  DEVEFYKRRPQRMLS 75
           DEVEFYKRRPQR  S
Sbjct: 577 DEVEFYKRRPQRACS 591

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233871|ref|XP_969436.2| PREDICTED: similar to FoxP protein [Tribolium castaneum]

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 74/76 (97%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct: 685 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 744

Query: 61  DEVEFYKRRPQRMLSG 76
           DEVEFYKRRPQR  SG
Sbjct: 745 DEVEFYKRRPQRCSSG 760

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212692|gb|EFN88383.1| Forkhead box protein P4 [Harpegnathos saltator]

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/75 (96%), Positives = 73/75 (97%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
           SIIESP+KQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct: 508 SIIESPEKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 567

Query: 61  DEVEFYKRRPQRMLS 75
           DEVEFYKRRPQR  S
Sbjct: 568 DEVEFYKRRPQRACS 582

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
FB|FBgn0262477	442	FoxP "Forkhead box P" [Drosoph	0.5	0.162	0.958	3.5e-36
UNIPROTKB|I3LSV4	455	FOXP1 "Uncharacterized protein	0.576	0.182	0.785	1.8e-32
UNIPROTKB|H0Y882	573	FOXP1 "Forkhead box protein P1	0.576	0.144	0.785	4.8e-32
UNIPROTKB|Q5W1J5	578	foxp1 "Forkhead box protein P1	0.569	0.141	0.783	8.6e-32
UNIPROTKB|A4IFD2	674	FOXP1 "Forkhead box protein P1	0.576	0.123	0.785	1e-31
UNIPROTKB|G5E9V8	676	FOXP1 "Forkhead box P1, isofor	0.576	0.122	0.785	1e-31
UNIPROTKB|Q9H334	677	FOXP1 "Forkhead box protein P1	0.576	0.122	0.785	1e-31
UNIPROTKB|F1PY16	678	FOXP1 "Uncharacterized protein	0.576	0.122	0.785	1e-31
UNIPROTKB|E9PFD3	679	FOXP1 "Forkhead box protein P1	0.576	0.122	0.785	1e-31
MGI|MGI:1914004	705	Foxp1 "forkhead box P1" [Mus m	0.576	0.117	0.785	1.2e-31

FB|FBgn0262477 FoxP "Forkhead box P" [Drosophila melanogaster (taxid:7227)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 69/72 (95%), Positives = 72/72 (100%)

Query:     1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
             +II+SPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV
Sbjct:   340 AIIDSPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 399

Query:    61 DEVEFYKRRPQR 72
             DE+EFYKRRPQR
Sbjct:   400 DEIEFYKRRPQR 411

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|I3LSV4 FOXP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 66/84 (78%), Positives = 73/84 (86%)

Query:     1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
             +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct:   255 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 314

Query:    61 DEVEFYKRRPQRMLSGQTYLCTNV 84
             DEVEF KRRPQ+ +SG   L  N+
Sbjct:   315 DEVEFQKRRPQK-ISGNPSLIKNM 337

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|H0Y882 FOXP1 "Forkhead box protein P1" [Homo sapiens (taxid:9606)]

 Score = 355 (130.0 bits), Expect = 4.8e-32, P = 4.8e-32
 Identities = 66/84 (78%), Positives = 73/84 (86%)

Query:     1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
             +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct:   373 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 432

Query:    61 DEVEFYKRRPQRMLSGQTYLCTNV 84
             DEVEF KRRPQ+ +SG   L  N+
Sbjct:   433 DEVEFQKRRPQK-ISGNPSLIKNM 455

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q5W1J5 foxp1 "Forkhead box protein P1" [Xenopus laevis (taxid:8355)]

 Score = 353 (129.3 bits), Expect = 8.6e-32, P = 8.6e-32
 Identities = 65/83 (78%), Positives = 72/83 (86%)

Query:     2 IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVD 61
             I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTVD
Sbjct:   379 ILESPEKQLTLNEIYNWFTRQFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVD 438

Query:    62 EVEFYKRRPQRMLSGQTYLCTNV 84
             E+EF KRRPQ+ +SG   L  N+
Sbjct:   439 EMEFQKRRPQK-ISGSPTLIKNI 460

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=NAS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

UNIPROTKB|A4IFD2 FOXP1 "Forkhead box protein P1" [Bos taurus (taxid:9913)]

 Score = 355 (130.0 bits), Expect = 1.0e-31, P = 1.0e-31
 Identities = 66/84 (78%), Positives = 73/84 (86%)

Query:     1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
             +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct:   474 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 533

Query:    61 DEVEFYKRRPQRMLSGQTYLCTNV 84
             DEVEF KRRPQ+ +SG   L  N+
Sbjct:   534 DEVEFQKRRPQK-ISGNPSLIKNM 556

GO:0060501 "positive regulation of epithelial cell proliferation involved in lung morphogenesis" evidence=IBA

GO:0055007 "cardiac muscle cell differentiation" evidence=IBA

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0048745 "smooth muscle tissue development" evidence=IBA

GO:0046982 "protein heterodimerization activity" evidence=IBA

GO:0042803 "protein homodimerization activity" evidence=IBA

GO:0033152 "immunoglobulin V(D)J recombination" evidence=IBA

GO:0009790 "embryo development" evidence=IBA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0008134 "transcription factor binding" evidence=IBA

GO:0007519 "skeletal muscle tissue development" evidence=IBA

GO:0007389 "pattern specification process" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0003682 "chromatin binding" evidence=IBA

GO:0002639 "positive regulation of immunoglobulin production" evidence=IBA

GO:0002329 "pre-B cell differentiation" evidence=IBA

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IBA

GO:2000727 "positive regulation of cardiac muscle cell differentiation" evidence=IEA

GO:0060043 "regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G5E9V8 FOXP1 "Forkhead box P1, isoform CRA_d" [Homo sapiens (taxid:9606)]

 Score = 355 (130.0 bits), Expect = 1.0e-31, P = 1.0e-31
 Identities = 66/84 (78%), Positives = 73/84 (86%)

Query:     1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
             +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct:   476 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 535

Query:    61 DEVEFYKRRPQRMLSGQTYLCTNV 84
             DEVEF KRRPQ+ +SG   L  N+
Sbjct:   536 DEVEFQKRRPQK-ISGNPSLIKNM 558

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q9H334 FOXP1 "Forkhead box protein P1" [Homo sapiens (taxid:9606)]

 Score = 355 (130.0 bits), Expect = 1.0e-31, P = 1.0e-31
 Identities = 66/84 (78%), Positives = 73/84 (86%)

Query:     1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
             +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct:   477 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 536

Query:    61 DEVEFYKRRPQRMLSGQTYLCTNV 84
             DEVEF KRRPQ+ +SG   L  N+
Sbjct:   537 DEVEFQKRRPQK-ISGNPSLIKNM 559

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0060043 "regulation of cardiac muscle cell proliferation" evidence=IEA

GO:2000727 "positive regulation of cardiac muscle cell differentiation" evidence=IEA

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IBA

GO:0002329 "pre-B cell differentiation" evidence=IBA

GO:0002639 "positive regulation of immunoglobulin production" evidence=IBA

GO:0003682 "chromatin binding" evidence=IBA

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0007389 "pattern specification process" evidence=IBA

GO:0007519 "skeletal muscle tissue development" evidence=IBA

GO:0008134 "transcription factor binding" evidence=IBA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0009790 "embryo development" evidence=IBA

GO:0033152 "immunoglobulin V(D)J recombination" evidence=IBA

GO:0042803 "protein homodimerization activity" evidence=IBA

GO:0046982 "protein heterodimerization activity" evidence=IBA

GO:0048745 "smooth muscle tissue development" evidence=IBA

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0055007 "cardiac muscle cell differentiation" evidence=IBA

GO:0060501 "positive regulation of epithelial cell proliferation involved in lung morphogenesis" evidence=IBA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1PY16 FOXP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 355 (130.0 bits), Expect = 1.0e-31, P = 1.0e-31
 Identities = 66/84 (78%), Positives = 73/84 (86%)

Query:     1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
             +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct:   478 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 537

Query:    61 DEVEFYKRRPQRMLSGQTYLCTNV 84
             DEVEF KRRPQ+ +SG   L  N+
Sbjct:   538 DEVEFQKRRPQK-ISGNPSLIKNM 560

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E9PFD3 FOXP1 "Forkhead box protein P1" [Homo sapiens (taxid:9606)]

 Score = 355 (130.0 bits), Expect = 1.0e-31, P = 1.0e-31
 Identities = 66/84 (78%), Positives = 73/84 (86%)

Query:     1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
             +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct:   479 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 538

Query:    61 DEVEFYKRRPQRMLSGQTYLCTNV 84
             DEVEF KRRPQ+ +SG   L  N+
Sbjct:   539 DEVEFQKRRPQK-ISGNPSLIKNM 561

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1914004 Foxp1 "forkhead box P1" [Mus musculus (taxid:10090)]

 Score = 355 (130.0 bits), Expect = 1.2e-31, P = 1.2e-31
 Identities = 66/84 (78%), Positives = 73/84 (86%)

Query:     1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
             +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct:   505 AILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 564

Query:    61 DEVEFYKRRPQRMLSGQTYLCTNV 84
             DEVEF KRRPQ+ +SG   L  N+
Sbjct:   565 DEVEFQKRRPQK-ISGNPSLIKNM 587

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IGI;IBA;IDA

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IGI

GO:0002329 "pre-B cell differentiation" evidence=IMP

GO:0002639 "positive regulation of immunoglobulin production" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IGI;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IC;IDA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007389 "pattern specification process" evidence=IBA

GO:0007507 "heart development" evidence=IMP

GO:0007519 "skeletal muscle tissue development" evidence=IGI

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0008134 "transcription factor binding" evidence=IBA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0009790 "embryo development" evidence=IGI;IMP

GO:0030324 "lung development" evidence=IGI

GO:0033152 "immunoglobulin V(D)J recombination" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048745 "smooth muscle tissue development" evidence=IGI

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=IGI

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0055007 "cardiac muscle cell differentiation" evidence=IMP

GO:0060043 "regulation of cardiac muscle cell proliferation" evidence=IGI;IMP

GO:0060501 "positive regulation of epithelial cell proliferation involved in lung morphogenesis" evidence=IBA

GO:0072358 "cardiovascular system development" evidence=IGI;IMP

GO:2000727 "positive regulation of cardiac muscle cell differentiation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9H334	FOXP1_HUMAN	No assigned EC number	0.7857	0.5763	0.1225	yes	N/A
Q498D1	FOXP1_RAT	No assigned EC number	0.7857	0.5763	0.1167	yes	N/A
Q58NQ4	FOXP1_CHICK	No assigned EC number	0.7738	0.5763	0.1209	yes	N/A
A4IFD2	FOXP1_BOVIN	No assigned EC number	0.7857	0.5763	0.1231	yes	N/A
Q2LE08	FXP1B_DANRE	No assigned EC number	0.7738	0.5763	0.1259	yes	N/A
P58462	FOXP1_MOUSE	No assigned EC number	0.7857	0.5763	0.1177	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	144
cd00059	78	cd00059, FH, Forkhead (FH), also known as a "winge	3e-29
smart00339	89	smart00339, FH, FORKHEAD	2e-28
pfam00250	96	pfam00250, Fork_head, Fork head domain	1e-20
COG5025	610	COG5025, COG5025, Transcription factor of the Fork	1e-10
COG5025	610	COG5025, COG5025, Transcription factor of the Fork	3e-09

>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix"

 Score =  101 bits (254), Expect = 3e-29
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 5/65 (7%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGA 56
          I  SP+K+LTL+EIY W  + F YFR   A W+N++RHNLSL+KCF++V        KG+
Sbjct: 14 IQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFVKVPREPDEPGKGS 73

Query: 57 VWTVD 61
           WT+D
Sbjct: 74 YWTLD 78

FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix. Length = 78

>gnl|CDD|214627 smart00339, FH, FORKHEAD

 Score = 99.2 bits (248), Expect = 2e-28
 Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 5/65 (7%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGA 56
          I+ SPDK+LTL+EIY W ++ F Y+R N A W+N++RHNLSL+ CF++V        KG+
Sbjct: 14 ILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFVKVPREGDRPGKGS 73

Query: 57 VWTVD 61
           WT+D
Sbjct: 74 YWTLD 78

FORKHEAD, also known as a "winged helix". Length = 89

>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain

 Score = 80.0 bits (198), Expect = 1e-20
 Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 5/66 (7%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKGA 56
          I +SP+K LTL+EIY W  + F Y+R+N   W+N++RHNLSL+KCF++V     +  KG+
Sbjct: 14 IQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFIKVPRSPDKPGKGS 73

Query: 57 VWTVDE 62
           WT+D 
Sbjct: 74 YWTLDP 79

Length = 96

>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription]

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 9/82 (10%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKG 55
           +I+ SPDK LTL++IY W  NTF Y+ +  + W+N++RHNLSL+  F+++E      VKG
Sbjct: 98  AILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFIKIEGRNGAKVKG 157

Query: 56  AVWTVDEVEFYKRRPQRMLSGQ 77
             W++          Q + SG 
Sbjct: 158 HFWSIGPGHE----TQFLKSGL 175

Length = 610

>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription]

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)

Query: 2   IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KGA 56
           I+ SP  ++TL+EIY+W  +   Y+R     W+N++RHNLSL+K F +V        KG 
Sbjct: 350 ILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSIRHNLSLNKSFEKVPRSASQPGKGC 409

Query: 57  VWTVDEVEFYKRRPQR 72
            W +D    Y++  +R
Sbjct: 410 FWKIDYSYIYEKESKR 425

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
cd00059	78	FH Forkhead (FH), also known as a "winged helix".	99.97
PF00250	96	Fork_head: Fork head domain; InterPro: IPR001766 T	99.96
smart00339	89	FH FORKHEAD. FORKHEAD, also known as a "winged hel	99.96
KOG3563|consensus	454		99.94
KOG2294|consensus	454		99.92
KOG3562|consensus	277		99.92
KOG4385|consensus	581		99.87
COG5025	610	Transcription factor of the Forkhead/HNF3 family [	99.64
COG5025	610	Transcription factor of the Forkhead/HNF3 family [	99.15

>cd00059 FH Forkhead (FH), also known as a "winged helix"

Probab=99.97  E-value=6.8e-32  Score=188.96  Aligned_cols=61  Identities=54%  Similarity=1.087  Sum_probs=58.9

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEec
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVD   61 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~   61 (144)
                      ||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++     |||+||+||
T Consensus        13 Ai~~sp~~~lTL~eIy~~I~~~~pyyr~~~~gWknSIRHnLS~n~~F~kv~r~~~~~gkg~~W~i~   78 (78)
T cd00059          13 AIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFVKVPREPDEPGKGSYWTLD   78 (78)
T ss_pred             HHHhCCCCCeeHHHHHHHHHHhCCccccCCCCCccceeEecccccceEECCCCCCCCCCCCeeeeC
Confidence            7999999999999999999999999999999999999999999999999976     699999997

FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.

>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []

Probab=99.96  E-value=9.2e-31  Score=189.08  Aligned_cols=65  Identities=51%  Similarity=1.045  Sum_probs=60.8

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecchhh
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEVEF   65 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~~~   65 (144)
                      ||++||+++|||+|||+||+++||||+.+.++||||||||||+|+||+||++     |||++|+|+++..
T Consensus        13 Ai~~sp~~~Ltl~eIy~~i~~~~pyyr~~~~~WknSIRHnLS~~~~F~kv~~~~~~~gkg~~W~i~~~~~   82 (96)
T PF00250_consen   13 AILSSPDKRLTLSEIYEWIEENFPYYRDASKGWKNSIRHNLSLNKCFVKVPRDPSEPGKGSYWTIDPEAI   82 (96)
T ss_dssp             HHHTSTTSEBEHHHHHHHHHHHCGHHHCTHCHHHHHHHHHHHHSTTEEEESCCTSSSSSSEEEEE-CTHH
T ss_pred             HHHhCCCCCccHHHHHHHHHHhhccccccchhhhhHHhhhccccceeeecCcCCCCCCCceeEEeCHHHH
Confidence            7999999999999999999999999999999999999999999999999976     7999999998753

Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....

>smart00339 FH FORKHEAD

Probab=99.96  E-value=3e-30  Score=184.26  Aligned_cols=66  Identities=50%  Similarity=0.999  Sum_probs=62.2

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecchhhh
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEVEFY   66 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~~~~   66 (144)
                      ||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++     |||++|+|+++...
T Consensus        13 ai~~sp~~~ltl~~Iy~~I~~~~pyy~~~~~~WknSIRHnLS~n~~F~kv~~~~~~~gkg~~W~i~~~~~~   83 (89)
T smart00339       13 AILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFVKVPREGDRPGKGSYWTLDPDAEN   83 (89)
T ss_pred             HHHhCCCCCeeHHHHHHHHHHhCchhhcCccccccccccccchhhceeecCcCCCCCCCCCEEEECccHHH
Confidence            7899999999999999999999999999999999999999999999999975     79999999987643

FORKHEAD, also known as a "winged helix"

>KOG3563|consensus

Probab=99.94  E-value=3.9e-28  Score=209.69  Aligned_cols=78  Identities=40%  Similarity=0.854  Sum_probs=68.6

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecch-------hhhhc
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEV-------EFYKR   68 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~-------~~~~r   68 (144)
                      ||+.+|.++|||.|||+||++.|||||.+...|||||||.||+|+|||||+|     |||+||||.|.       .++-|
T Consensus       185 AIQ~~pskmLTLSEIYqwIMDLFPyYrqNQQRWQNSIRHSLSFNDCFVKVaRSPDKPGKGSfWTLHpdsGNMFENGCYLR  264 (454)
T KOG3563|consen  185 AIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSFWTLHPDSGNMFENGCYLR  264 (454)
T ss_pred             HHHhCCccceeHHHHHHHHHHhhhHhhhhHHHHHhhhhhhccccceeeeccCCCCCCCCccceeecCCcCcccccchheh
Confidence            7999999999999999999999999999999999999999999999999976     89999999864       45556


Q ss_pred             CccccCCCCc
Q psy15601         69 RPQRMLSGQT   78 (144)
Q Consensus        69 r~~r~~~~~~   78 (144)
                      |.+|.+..++
T Consensus       265 RQKRFK~ekk  274 (454)
T KOG3563|consen  265 RQKRFKCEKK  274 (454)
T ss_pred             hhhhhhhhhh
Confidence            6555554433

>KOG2294|consensus

Probab=99.92  E-value=9.9e-27  Score=199.90  Aligned_cols=63  Identities=48%  Similarity=0.839  Sum_probs=60.1

Q ss_pred             CCCCCCCCCcCHHHHHHHHHh-hcCCCcccc-ccccccchhhcccCccceeecc-----CCCceEEecch
Q psy15601          1 SIIESPDKQLTLNEIYNWFQN-TFCYFRRNA-ATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEV   63 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~-~fPyfr~~~-~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~   63 (144)
                      ||+.||+|+|||+|||+||.. +||||+.+. .|||||||||||+|+||+||+|     |||+||+||++
T Consensus       142 AI~~Sp~krLtLs~Iy~~i~~~~fpyyr~~~~~gWqNSIRHNLSLn~cF~Kvpr~~~~~gKg~~W~ldP~  211 (454)
T KOG2294|consen  142 AIRLSPGKRLTLGGIYFYILLEHFPYYRDANMPGWKNSIRHNLSLNKCFVKVPRERGRPGKGNYWTLDPD  211 (454)
T ss_pred             ccccCCCcceeecCeeEEEEeccccccccCCCccchhhcccccccccCccccCCcccCCCCCCccccCcc
Confidence            899999999999999999995 999999999 9999999999999999999975     79999999974

>KOG3562|consensus

Probab=99.92  E-value=2.2e-26  Score=188.86  Aligned_cols=63  Identities=38%  Similarity=0.898  Sum_probs=61.0

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecch
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEV   63 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~   63 (144)
                      ||.+||+|+|.|.|||.||+++|||||.+...||||+|||||+|+||+||+|     |||+||+|.+.
T Consensus        25 AI~~SpekmLPLseIYkfImDrFPfYRkNTQrWQNSLRHNLSFNDCFIKiPRr~drpGKGsyWalHP~   92 (277)
T KOG3562|consen   25 AIQSSPEKMLPLSEIYKFIMDRFPFYRKNTQRWQNSLRHNLSFNDCFIKIPRRPDRPGKGSYWALHPS   92 (277)
T ss_pred             HhhcChhhcCcHHHHHHHHHhhCchhhhchHHHHHHhhccccccceeeecCCCCCCCCCccceeeccc
Confidence            7999999999999999999999999999999999999999999999999986     89999999874

>KOG4385|consensus

Probab=99.87  E-value=6.2e-24  Score=188.57  Aligned_cols=75  Identities=84%  Similarity=1.377  Sum_probs=72.3

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeeccCCCceEEecchhhhhcCccccCC
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLS   75 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~rgkg~~W~i~~~~~~~rr~~r~~~   75 (144)
                      ||++|||++|||+|||.|+++.|.|||.+...|||+||||||+++||++|+.-||..|++|+.++.+||+.+...
T Consensus       380 AIlESpdkQLTLNEIY~WFTrtFAYFRRNaATWKnAVRHNLSLHKCF~RVEnvkgavwtvDe~e~~krr~~k~~g  454 (581)
T KOG4385|consen  380 AILESPDKQLTLNEIYNWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREFQKRRPQKITG  454 (581)
T ss_pred             HHhcCchhhccHHHHHHHHHHHHHHHhccchhHhHHHhhhhHHHHHHHHHHHHhcceeeeehhhhhhhcCccccC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999887653

>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]

Probab=99.64  E-value=4.5e-17  Score=148.75  Aligned_cols=66  Identities=41%  Similarity=0.893  Sum_probs=62.2

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecchhhh
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEVEFY   66 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~~~~   66 (144)
                      ||+.+|+++|+|.|||.||...||||+....+|+||||||||+|++|.||++     |||+||.++++..+
T Consensus       349 ail~s~~~kmsls~Iy~~i~s~~pyYr~~p~~w~nSiRhnlSlNksf~kvP~sa~~pGKg~fw~i~~s~~~  419 (610)
T COG5025         349 AILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSIRHNLSLNKSFEKVPRSASQPGKGCFWKIDYSYIY  419 (610)
T ss_pred             HhhcCcccccccccccccccccchhhccCCcccCchhhhhhhhccccccCCCCcCCCCCcccCccChhhhh
Confidence            6899999999999999999999999999999999999999999999999986     89999999986543

>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]

Probab=99.15  E-value=6.2e-12  Score=115.34  Aligned_cols=64  Identities=45%  Similarity=0.998  Sum_probs=60.3

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecchh
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEVE   64 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~~   64 (144)
                      ||+.+++++|||..||.||-..|.||.....+|+|||||||++++.|.|+++     ++|.+|.|.|..
T Consensus        98 ~il~s~~~~lt~s~~~~~~~~~~~~~~k~~~~~~~sIr~Nls~~~a~~~i~g~~g~~~~g~~~~igP~~  166 (610)
T COG5025          98 AILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFIKIEGRNGAKVKGHFWSIGPGH  166 (610)
T ss_pred             ccccCcccCCcccceeeeeeecccccccccchhhhhhhcccccCceEEEEeccCCccccceeeccCCCc
Confidence            6899999999999999999999999999999999999999999999999974     689999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
2kiu_A	87	Solution Structure And Backbone Dynamics Of The Dna		3e-32
2a07_F	93	Crystal Structure Of Foxp2 Bound Specifically To Dn		7e-32
3qrf_F	82	Structure Of A Domain-Swapped Foxp3 Dimer Length =		2e-25
2c6y_A	111	Crystal Structure Of Interleukin Enhancer-Binding F		9e-12
1jxs_A	98	Solution Structure Of The Dna-Binding Domain Of Int		2e-11
1d5v_A	94	Solution Structure Of The Forkhead Domain Of The Ad		3e-11
2uzk_A	97	Crystal Structure Of The Human Foxo3a-Dbd Bound To		1e-10
2k86_A	103	Solution Structure Of Foxo3a Forkhead Domain Length		1e-10
1vtn_C	102	Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Reco		2e-10
2hdc_A	97	Structure Of Transcription Factor GenesisDNA COMPLE		2e-10
2hfh_A	109	The Nmr Structures Of A Winged Helix Protein: Genes		2e-10
1e17_A	150	Solution Structure Of The Dna Binding Domain Of The		9e-10
3l2c_A	110	Crystal Structure Of The Dna Binding Domain Of Foxo		2e-09
3g73_A	142	Structure Of The Foxm1 Dna Binding Length = 142		2e-09
3co6_C	100	Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Le		2e-09
3co7_C	117	Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Le		3e-09
2a3s_A	101	Solution Structure And Dynamics Of Dna-Binding Doma		2e-08
1kq8_A	100	Solution Structure Of Winged Helix Protein Hfh-1 Le		3e-07

>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The Dna-Binding Domain Of Foxp1: Insight Into Its Domain Swapping Length = 87

Iteration: 1
 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 66/72 (91%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
          +I+ESP+KQLTLNEIYNWF   F YFRRNAATWKNAVRHNLSLHK F+RVENVKGAVWTV
Sbjct: 16 AILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKYFVRVENVKGAVWTV 75
Query: 61 DEVEFYKRRPQR 72
          DEVEF KRRPQ+
Sbjct: 76 DEVEFQKRRPQK 87

>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna. Length = 93

Iteration: 1
 Score =  132 bits (332), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 68/78 (87%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
          +I+ES D+QLTLNEIY+WF  TF YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 15 AIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 74
Query: 61 DEVEFYKRRPQRMLSGQT 78
          DEVE+ KRR Q++    T
Sbjct: 75 DEVEYQKRRSQKITGSPT 92

>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer Length = 82

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 60/69 (86%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
          +I+E+P+KQ TLNEIY+WF   F +FR + ATWKNA+RHNLSLHKCF+RVE+ KGAVWTV
Sbjct: 14 AILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWKNAIRHNLSLHKCFVRVESEKGAVWTV 73
Query: 61 DEVEFYKRR 69
          DE+EF K+R
Sbjct: 74 DELEFRKKR 82

>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1 Bound To Dna Length = 111

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
           +I  +PDKQLTLN IY      + Y+R     W+N++RHNLSL++ F++V     E  KG
Sbjct: 28  AITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKG 87
Query: 56  AVWTVD--------EVEFYKRRPQ 71
           + W +D        E  F KRRP+
Sbjct: 88  SFWRIDPASESKLIEQAFRKRRPR 111

>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Interleukin Enhancer Binding Factor Length = 98

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 13/84 (15%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
          +I  +PDKQLTLN IY      + Y+R     W+N++RHNLSL++ F++V     E  KG
Sbjct: 15 AITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKG 74
Query: 56 AVWTVD--------EVEFYKRRPQ 71
          + W +D        E  F KRRP+
Sbjct: 75 SFWRIDPASESKLIEQAFRKRRPR 98

>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 5/66 (7%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
          +I  +P+K++TLN IY +  + F ++R N   W+N++RHNLSL++CF++V     +  KG
Sbjct: 16 AIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKG 75
Query: 56 AVWTVD 61
          + WT+D
Sbjct: 76 SYWTLD 81

>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna Length = 97

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
          +I  SPDK+LTL++IY W      YF+      ++A WKN++RHNLSLH  FMRV+N
Sbjct: 13 AIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRFMRVQN 69

>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain Length = 103

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
          +I  SPDK+LTL++IY W      YF+      ++A WKN++RHNLSLH  FMRV+N
Sbjct: 21 AIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRFMRVQN 77

>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition Motif Resembles Histone H5 Length = 102

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KG 55
          +I ++P K LTL+EIY W  + F Y+R N   W+N++RH+LS + CF++V        KG
Sbjct: 15 AIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKG 74
Query: 56 AVWTV 60
          + W +
Sbjct: 75 SYWAL 79

>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX Length = 97

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KG 55
          +I++SP K+LTL+ I  +  N F Y+R     W+N++RHNLSL+ CF+++        KG
Sbjct: 14 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKG 73
Query: 56 AVWTVD 61
            WT+D
Sbjct: 74 NYWTLD 79

>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20 Structures Length = 109

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KG 55
          +I++SP K+LTL+ I  +  N F Y+R     W+N++RHNLSL+ CF+++        KG
Sbjct: 15 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKG 74
Query: 56 AVWTVD 61
            WT+D
Sbjct: 75 NYWTLD 80

>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound To Dna Length = 110

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
          +I  +P+K+LTL +IY W   T  YF+      ++A WKN++RHNLSLH  F++V N
Sbjct: 36 AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN 92

>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding Length = 142

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 8  KQLTLNEIYNWFQNTFCYFRRNAAT-WKNAVRHNLSLHKCFMRVENVKGAV--WTV 60
          K++TL +IY W ++ F YF+  A   WKN++RHNLSLH  F+R  +  G V  WT+
Sbjct: 37 KRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRETSANGKVSFWTI 92

>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Length = 100

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
          +I  S +K+LTL++IY W   +  YF+      ++A WKN++RHNLSLH  F+RV+N
Sbjct: 23 AIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQN 79

>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Length = 117

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVEN 52
          +I  S +K+LTL++IY W   +  YF+      ++A WKN++RHNLSLH  F+RV+N
Sbjct: 23 AIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQN 79

>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of Myocyte Nuclear Factor Length = 101

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 14/88 (15%)
Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
           +I  + D+QLTL+ IY      + Y+R     W+N++RHNLSL++ F++V     E  KG
Sbjct: 15  AISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKG 74
Query: 56  AVWTVD--------EVEFYKRRPQRMLS 75
           + W +D        E  F KRR QR +S
Sbjct: 75  SFWRIDPASEAKLVEQAFRKRR-QRGVS 101

>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1 Length = 100

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
          +I +S   +LTL EI  +    F +FR +   W+N+VRHNLSL+ CF++V       W  
Sbjct: 14 AIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGK 73
Query: 61 D 61
          D
Sbjct: 74 D 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
2a07_F	93	Forkhead box protein P2; double-helix, swapping, h	2e-42
2hfh_A	109	Genesis, HFH-2; HNF-3 homologues, winged helix pro	1e-25
1vtn_C	102	HNF-3/FORK head DNA-recognition motif; protein-DNA	1e-25
2hdc_A	97	Protein (transcription factor); structure, dyanami	1e-25
2c6y_A	111	Forkhead box protein K2; transcription regulation,	2e-25
3g73_A	142	Forkhead box protein M1; DNA-binding domain, forkh	5e-25
1kq8_A	100	HFH-1, hepatocyte nuclear factor 3 forkhead homolo	1e-24
3bpy_A	85	FORK head domain, forkhead transcription factor FO	2e-24
3l2c_A	110	Forkhead box protein O4; winged helix, transcripti	8e-24
1e17_A	150	AFX; DNA binding domain, winged helix; NMR {Homo s	2e-23
3coa_C	117	Forkhead box protein O1; winged helix, forkhead do	4e-23

>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93

 Score =  135 bits (341), Expect = 2e-42
 Identities = 59/73 (80%), Positives = 67/73 (91%)

Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTV 60
          +I+ES D+QLTLNEIY+WF  TF YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTV
Sbjct: 15 AIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTV 74

Query: 61 DEVEFYKRRPQRM 73
          DEVE+ KRR Q++
Sbjct: 75 DEVEYQKRRSQKI 87

>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109

 Score = 92.8 bits (231), Expect = 1e-25
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 12/85 (14%)

Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
          +I++SP K+LTL+ I  +  N F Y+R     W+N++RHNLSL+ CF+++        KG
Sbjct: 15 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKG 74

Query: 56 AVWTVD-------EVEFYKRRPQRM 73
            WT+D       +   + RR +R 
Sbjct: 75 NYWTLDPQSEDMFDNGSFLRRRKRF 99

>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102

 Score = 92.3 bits (230), Expect = 1e-25
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 12/84 (14%)

Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
          +I ++P K LTL+EIY W  + F Y+R N   W+N++RH+LS + CF++V     +  KG
Sbjct: 15 AIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKG 74

Query: 56 AVWTVD---EVEF----YKRRPQR 72
          + W +       F    Y RR +R
Sbjct: 75 SYWALHPSSGNMFENGCYLRRQKR 98

>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97

 Score = 91.9 bits (229), Expect = 1e-25
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 12/83 (14%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKGA 56
          I++SP K+LTL+ I  +  N F Y+R     W+N++RHNLSL+ CF+++        KG 
Sbjct: 15 ILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGN 74

Query: 57 VWTVD-------EVEFYKRRPQR 72
           WT+D       +   + RR +R
Sbjct: 75 YWTLDPQSEDMFDNGSFLRRRKR 97

>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111

 Score = 92.0 bits (229), Expect = 2e-25
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 12/84 (14%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKG 55
           +I  +PDKQLTLN IY      + Y+R     W+N++RHNLSL++ F++V     E  KG
Sbjct: 28  AITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKG 87

Query: 56  AVWTVD---EVEF----YKRRPQR 72
           + W +D   E +     +++R  R
Sbjct: 88  SFWRIDPASESKLIEQAFRKRRPR 111

>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142

 Score = 92.2 bits (229), Expect = 5e-25
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFRRNAAT-WKNAVRHNLSLHKCFMRV--ENVKGAV 57
           +I  +  K++TL +IY W ++ F YF+  A   WKN++RHNLSLH  F+R    N K + 
Sbjct: 30  AINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRETSANGKVSF 89

Query: 58  WTVD-------EVEFYKRRPQR 72
           WT+         ++   +    
Sbjct: 90  WTIHPSANRYLTLDQVFKPLDP 111

>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100

 Score = 90.0 bits (224), Expect = 1e-24
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVE------NVKG 55
          I +S   +LTL EI  +    F +FR +   W+N+VRHNLSL+ CF++V         K 
Sbjct: 15 IRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKD 74

Query: 56 AVWTVD---EVEF----YKRRPQR 72
            W ++   E  F    ++RR  R
Sbjct: 75 NYWMLNPNSEYTFADGVFRRRRYR 98

>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85

 Score = 88.9 bits (221), Expect = 2e-24
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 8/69 (11%)

Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVENV-- 53
          +I  +P+K+LTL +IY W   T  YF+      ++A WKN++RHNLSLH  F++V N   
Sbjct: 17 AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEAT 76

Query: 54 -KGAVWTVD 61
           K + W ++
Sbjct: 77 GKSSWWMLN 85

>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110

 Score = 87.9 bits (218), Expect = 8e-24
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 8/69 (11%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVENV-- 53
           +I  +P+K+LTL +IY W   T  YF+      ++A WKN++RHNLSLH  F++V N   
Sbjct: 36  AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEAT 95

Query: 54  -KGAVWTVD 61
            K + W ++
Sbjct: 96  GKSSWWMLN 104

>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117

 Score = 86.4 bits (214), Expect = 4e-23
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 13/86 (15%)

Query: 1   SIIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRVENV-- 53
           +I  S +K+LTL++IY W   +  YF+      ++A WKN++RHNLSLH  F+RV+N   
Sbjct: 23  AIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNEGT 82

Query: 54  -KGAVWTVD-----EVEFYKRRPQRM 73
            K + W ++       +  +RR   M
Sbjct: 83  GKSSWWMLNPEGGKSGKSPRRRAASM 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
2a07_F	93	Forkhead box protein P2; double-helix, swapping, h	100.0
1vtn_C	102	HNF-3/FORK head DNA-recognition motif; protein-DNA	99.97
1kq8_A	100	HFH-1, hepatocyte nuclear factor 3 forkhead homolo	99.97
2hdc_A	97	Protein (transcription factor); structure, dyanami	99.97
2c6y_A	111	Forkhead box protein K2; transcription regulation,	99.97
3coa_C	117	Forkhead box protein O1; winged helix, forkhead do	99.97
2hfh_A	109	Genesis, HFH-2; HNF-3 homologues, winged helix pro	99.97
3bpy_A	85	FORK head domain, forkhead transcription factor FO	99.97
3l2c_A	110	Forkhead box protein O4; winged helix, transcripti	99.96
1e17_A	150	AFX; DNA binding domain, winged helix; NMR {Homo s	99.96
3g73_A	142	Forkhead box protein M1; DNA-binding domain, forkh	99.95

>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F

Probab=100.00  E-value=4.5e-36  Score=215.52  Aligned_cols=75  Identities=79%  Similarity=1.312  Sum_probs=67.6

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeeccCCCceEEecchhhhhcCccccCC
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQRMLS   75 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~rgkg~~W~i~~~~~~~rr~~r~~~   75 (144)
                      ||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++|||+||+|||+++.++|.++...
T Consensus        15 AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~gkG~~W~l~~~~~~k~r~~~~~~   89 (93)
T 2a07_F           15 AIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQKRRSQKITG   89 (93)
T ss_dssp             HHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEECSSSEECCBCHHHHHHHC------
T ss_pred             HHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCCCCCCeeEEChHHhhccccccccC
Confidence            789999999999999999999999999999999999999999999999999999999999999999888776654

>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A

Probab=99.97  E-value=1.5e-33  Score=205.27  Aligned_cols=64  Identities=41%  Similarity=0.924  Sum_probs=61.2

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecchh
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEVE   64 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~~   64 (144)
                      ||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++     |||+||+|+|+.
T Consensus        15 AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~p~~   83 (102)
T 1vtn_C           15 AIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSS   83 (102)
T ss_dssp             HHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEECGGG
T ss_pred             HHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEECcCH
Confidence            7999999999999999999999999999999999999999999999999976     899999999863

>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14

Probab=99.97  E-value=1.5e-33  Score=204.53  Aligned_cols=63  Identities=38%  Similarity=0.730  Sum_probs=60.0

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc------CCCceEEecch
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN------VKGAVWTVDEV   63 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r------gkg~~W~i~~~   63 (144)
                      ||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++      |||+||+|||+
T Consensus        14 AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~p~   82 (100)
T 1kq8_A           14 AIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPN   82 (100)
T ss_dssp             HHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECCC-
T ss_pred             HHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEECcC
Confidence            7999999999999999999999999999999999999999999999999975      79999999975

>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14

Probab=99.97  E-value=1.2e-33  Score=204.04  Aligned_cols=63  Identities=43%  Similarity=0.908  Sum_probs=60.6

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecch
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEV   63 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~   63 (144)
                      ||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++     |||+||+|+++
T Consensus        14 AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p~   81 (97)
T 2hdc_A           14 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQ   81 (97)
T ss_dssp             HHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCTT
T ss_pred             HHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECcC
Confidence            7999999999999999999999999999999999999999999999999976     79999999985

>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A

Probab=99.97  E-value=4.3e-33  Score=205.56  Aligned_cols=63  Identities=43%  Similarity=0.860  Sum_probs=60.5

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecch
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEV   63 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~   63 (144)
                      ||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++     |||+||+|||+
T Consensus        28 AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p~   95 (111)
T 2c6y_A           28 AITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPA   95 (111)
T ss_dssp             HHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEECHH
T ss_pred             HHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceEEeChh
Confidence            7999999999999999999999999999999999999999999999999975     79999999985

>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A

Probab=99.97  E-value=7.1e-33  Score=206.07  Aligned_cols=73  Identities=40%  Similarity=0.727  Sum_probs=59.4

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCcccc-----ccccccchhhcccCccceeecc---CCCceEEecchhhhhcCccc
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNA-----ATWKNAVRHNLSLHKCFMRVEN---VKGAVWTVDEVEFYKRRPQR   72 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~-----~gWkNSIRHNLS~n~~F~Kv~r---gkg~~W~i~~~~~~~rr~~r   72 (144)
                      ||++||+++|||+|||+||+++||||+.+.     .|||||||||||+|+||+||++   |||+||+|||+....++.+|
T Consensus        23 AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~~~~GKg~~W~l~p~~~~~~~~~R  102 (117)
T 3coa_C           23 AIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNEGTGKSSWWMLNPEGGKSGKSPR  102 (117)
T ss_dssp             HHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECCSSTTCCCEEEECC----------
T ss_pred             HHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhcccccCCCCCcceEEECccccccCcccc
Confidence            799999999999999999999999999875     7999999999999999999986   79999999998654444333


Q ss_pred             c
Q psy15601         73 M   73 (144)
Q Consensus        73 ~   73 (144)
                      +
T Consensus       103 r  103 (117)
T 3coa_C          103 R  103 (117)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14

Probab=99.97  E-value=4.4e-33  Score=205.00  Aligned_cols=63  Identities=43%  Similarity=0.908  Sum_probs=60.7

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecch
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEV   63 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~   63 (144)
                      ||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++     |||+||+|+|+
T Consensus        15 AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p~   82 (109)
T 2hfh_A           15 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQ   82 (109)
T ss_dssp             HHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCTT
T ss_pred             HHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECcc
Confidence            7999999999999999999999999999999999999999999999999976     79999999975

>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}

Probab=99.97  E-value=3.6e-32  Score=192.15  Aligned_cols=61  Identities=46%  Similarity=0.914  Sum_probs=57.9

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccc-----cccccccchhhcccCccceeecc---CCCceEEec
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRN-----AATWKNAVRHNLSLHKCFMRVEN---VKGAVWTVD   61 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~-----~~gWkNSIRHNLS~n~~F~Kv~r---gkg~~W~i~   61 (144)
                      ||++||+++|||+|||+||+++||||+.+     ..|||||||||||+|+||+||++   |||+||+||
T Consensus        17 Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~~~GKg~~W~ld   85 (85)
T 3bpy_A           17 AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLN   85 (85)
T ss_dssp             HHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCCEEEEC
T ss_pred             HHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCCCCCCCCceecC
Confidence            78999999999999999999999999986     36999999999999999999987   899999997

>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*

Probab=99.96  E-value=1.3e-31  Score=197.20  Aligned_cols=64  Identities=44%  Similarity=0.855  Sum_probs=58.1

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccc-----cccccccchhhcccCccceeecc---CCCceEEecchh
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRN-----AATWKNAVRHNLSLHKCFMRVEN---VKGAVWTVDEVE   64 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~-----~~gWkNSIRHNLS~n~~F~Kv~r---gkg~~W~i~~~~   64 (144)
                      ||++||+++|||+|||+||+++||||+.+     ..|||||||||||+|+||+||++   |||+||+|||+.
T Consensus        36 AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~~~GKG~~W~l~p~~  107 (110)
T 3l2c_A           36 AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEG  107 (110)
T ss_dssp             HHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCCEEEEC---
T ss_pred             HHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCCCCCCCCceEEECccc
Confidence            79999999999999999999999999986     46999999999999999999986   799999999864

>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}

Probab=99.95  E-value=1.9e-29  Score=193.01  Aligned_cols=64  Identities=41%  Similarity=0.831  Sum_probs=60.6

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCcc-ccccccccchhhcccCccceeec--cCCCceEEecchh
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRR-NAATWKNAVRHNLSLHKCFMRVE--NVKGAVWTVDEVE   64 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~-~~~gWkNSIRHNLS~n~~F~Kv~--rgkg~~W~i~~~~   64 (144)
                      ||++||+++|||+|||+||+++||||+. +..|||||||||||+|+||+|++  .|||+||+||++.
T Consensus        30 AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~~~~GKg~~W~i~p~~   96 (142)
T 3g73_A           30 AINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRETSANGKVSFWTIHPSA   96 (142)
T ss_dssp             HHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEECTTSCCEEEEECTTT
T ss_pred             HHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecCCCCCCCceEEECccc
Confidence            7999999999999999999999999998 78999999999999999999985  4899999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d2a07f1	82	a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP	5e-28
d2c6ya1	98	a.4.5.14 (A:1-98) Interleukin enhancer binding fac	5e-22
d1kq8a_	75	a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra	5e-21
d2hdca_	97	a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta	6e-21
d1d5va_	94	a.4.5.14 (A:) Adipocyte-transcription factor FREAC	6e-20
d3bpya1	85	a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie	2e-19

>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Forkhead box protein P2, FOXP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (241), Expect = 5e-28
 Identities = 58/68 (85%), Positives = 63/68 (92%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVD 61
          I+ES D+QLTLNEIY+WF  TF YFRRNAATWKNAVRHNLSLHKCF+RVENVKGAVWTVD
Sbjct: 15 IMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVD 74

Query: 62 EVEFYKRR 69
          EVE+ KRR
Sbjct: 75 EVEYQKRR 82

>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Interleukin enhancer binding factor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (202), Expect = 5e-22
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 13/83 (15%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV-----ENVKGA 56
          I  +PDKQLTLN IY      + Y+R     W+N++RHNLSL++ F++V     E  KG+
Sbjct: 16 ITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGS 75

Query: 57 VWTVD--------EVEFYKRRPQ 71
           W +D        E  F KRRP+
Sbjct: 76 FWRIDPASESKLIEQAFRKRRPR 98

>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: HFH-1 (HNF-3 forkhead homolog-1)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.8 bits (194), Expect = 5e-21
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV------KG 55
          I +S   +LTL EI  +    F +FR +   W+N+VRHNLSL+ CF++V         K 
Sbjct: 9  IRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKD 68

Query: 56 AVWTVD 61
            W ++
Sbjct: 69 NYWMLN 74

>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.2 bits (195), Expect = 6e-21
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 12/84 (14%)

Query: 1  SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KG 55
          +I++SP K+LTL+ I  +  N F Y+R     W+N++RHNLSL+ CF+++        KG
Sbjct: 14 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKG 73

Query: 56 AVWTVD---EVEF----YKRRPQR 72
            WT+D   E  F    + RR +R
Sbjct: 74 NYWTLDPQSEDMFDNGSFLRRRKR 97

>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Adipocyte-transcription factor FREAC-11 (s12, fkh-14)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (188), Expect = 6e-20
 Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 5/66 (7%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENV-----KGA 56
          I  +P+K++TLN IY +  + F ++R N   W+N++RHNLSL++CF++V        KG+
Sbjct: 17 IQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGS 76

Query: 57 VWTVDE 62
           WT+D 
Sbjct: 77 YWTLDP 82

>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Afx (Foxo4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (184), Expect = 2e-19
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 8/68 (11%)

Query: 2  IIESPDKQLTLNEIYNWFQNTFCYFR-----RNAATWKNAVRHNLSLHKCFMRV---ENV 53
          I  +P+K+LTL +IY W   T  YF+      ++A WKN++RHNLSLH  F++V      
Sbjct: 18 IESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATG 77

Query: 54 KGAVWTVD 61
          K + W ++
Sbjct: 78 KSSWWMLN 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d2a07f1	82	Forkhead box protein P2, FOXP2 {Human (Homo sapien	99.98
d1kq8a_	75	HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv	99.97
d2c6ya1	98	Interleukin enhancer binding factor {Human (Homo s	99.97
d1d5va_	94	Adipocyte-transcription factor FREAC-11 (s12, fkh-	99.97
d2hdca_	97	Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d3bpya1	85	Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}	99.96

>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Forkhead box protein P2, FOXP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.3e-35  Score=203.59  Aligned_cols=69  Identities=84%  Similarity=1.390  Sum_probs=66.1

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeeccCCCceEEecchhhhhcC
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRR   69 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~rgkg~~W~i~~~~~~~rr   69 (144)
                      ||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++|||++|+|||+++.++|
T Consensus        14 Ai~~sp~~~LtL~eIy~~i~~~fpyyr~~~~gWkNSIRHnLS~n~~F~kv~~~kG~~W~i~~~~~~k~r   82 (82)
T d2a07f1          14 AIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQKRR   82 (82)
T ss_dssp             HHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEECSSSEECCBCHHHHHHHC
T ss_pred             HHHhCCCCCccHHHHHHHHHHhCcccccCCcccchhHhHhcccccceEeCCCCCCCEEEECHHHHhccC
Confidence            789999999999999999999999999999999999999999999999999999999999998877664

>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: HFH-1 (HNF-3 forkhead homolog-1)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=9.8e-34  Score=194.64  Aligned_cols=62  Identities=39%  Similarity=0.754  Sum_probs=59.6

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc------CCCceEEecc
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN------VKGAVWTVDE   62 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r------gkg~~W~i~~   62 (144)
                      ||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++      |||+||+|||
T Consensus         8 Ai~~sp~~~ltL~eIy~~i~~~fpy~r~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~~gKg~~W~l~P   75 (75)
T d1kq8a_           8 AIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNP   75 (75)
T ss_dssp             HHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECCC
T ss_pred             HHHhCCCCCccHHHHHHHHHHhCcccccCCccchhHhhecccccceeEecCCCCCCCCCCccEEEeCc
Confidence            7999999999999999999999999999999999999999999999999965      7899999986

>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Interleukin enhancer binding factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-32  Score=197.77  Aligned_cols=64  Identities=42%  Similarity=0.848  Sum_probs=60.7

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecchh
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEVE   64 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~~   64 (144)
                      ||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++     |||+||+|+|+.
T Consensus        15 Ai~~sp~~~ltL~eIy~~i~~~fpyfr~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~gKg~~W~l~p~~   83 (98)
T d2c6ya1          15 AITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPAS   83 (98)
T ss_dssp             HHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEECHHH
T ss_pred             HHHhCCCCCccHHHHHHHHHHhCcccccCCCCcchhhchhcccccceEeccCCCCCCCCCceEEECccH
Confidence            7899999999999999999999999999999999999999999999999965     799999999753

>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Adipocyte-transcription factor FREAC-11 (s12, fkh-14)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-32  Score=195.91  Aligned_cols=67  Identities=40%  Similarity=0.883  Sum_probs=62.5

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecchhhhh
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEVEFYK   67 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~~~~~   67 (144)
                      ||++||+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++     |||++|+|+|+....
T Consensus        16 AI~~sp~~~ltL~eIY~~i~~~fpyfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gkg~~W~l~p~~~~~   87 (94)
T d1d5va_          16 AIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNM   87 (94)
T ss_dssp             HHHTCSSSSBCHHHHHHHHHHHCTHHHHCCTTHHHHHHHHHHHCSSEEECCCCTTSCSCCCCEEECCSCSST
T ss_pred             HHHhCCCCCccHHHHHHHHHHHCCccCccccchHHHHHHHccccceEEEcCcCCCCCCCCceEEECccHHHH
Confidence            7899999999999999999999999999999999999999999999999964     789999999876543

>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.3e-32  Score=196.85  Aligned_cols=64  Identities=42%  Similarity=0.895  Sum_probs=60.8

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccccccccccchhhcccCccceeecc-----CCCceEEecchh
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVEN-----VKGAVWTVDEVE   64 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~~~gWkNSIRHNLS~n~~F~Kv~r-----gkg~~W~i~~~~   64 (144)
                      ||++||+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++     |||+||+|+|+.
T Consensus        14 Ai~~sp~~~ltL~eIY~~i~~~fpyfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gKg~~W~l~p~~   82 (97)
T d2hdca_          14 AILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQS   82 (97)
T ss_dssp             HHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCTTH
T ss_pred             HHHhCCCcCccHHHHHHHHHHhCccccCCCCCchhhhhhhcchhhhhcccCCCCCCCCCCcEEEECccH
Confidence            7899999999999999999999999999999999999999999999999975     789999999764

>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Afx (Foxo4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-31  Score=187.78  Aligned_cols=61  Identities=46%  Similarity=0.914  Sum_probs=57.0

Q ss_pred             CCCCCCCCCcCHHHHHHHHHhhcCCCccc-----cccccccchhhcccCccceeecc---CCCceEEec
Q psy15601          1 SIIESPDKQLTLNEIYNWFQNTFCYFRRN-----AATWKNAVRHNLSLHKCFMRVEN---VKGAVWTVD   61 (144)
Q Consensus         1 AI~~Sp~~~LTL~eIY~~I~~~fPyfr~~-----~~gWkNSIRHNLS~n~~F~Kv~r---gkg~~W~i~   61 (144)
                      ||++||+++|||+|||+||+++|||||..     ..|||||||||||+|+||+||++   |||+||+||
T Consensus        17 Ai~~sp~~~ltL~eIY~~i~~~fPyyr~~~~~~~~~gWkNSIRHnLSl~~~F~kv~r~~~gKg~~W~i~   85 (85)
T d3bpya1          17 AIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLN   85 (85)
T ss_dssp             HHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCCEEEEC
T ss_pred             HHHhCCCCCccHHHHHHHHHHhChhhhccCcccccccchhhHHHHhhHhhheeeCCCCCCCCCceeecC
Confidence            78999999999999999999999999954     46899999999999999999976   899999996